Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: samr

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/samr

SAM: Significance Analysis of Microarrays
10 versions
Latest release: about 6 years ago
3 dependent packages
661 downloads last month

Papers Mentioning samr 114

10.3390/cancers12113267
Myeloma Cells Deplete Bone Marrow Glutamine and Inhibit Osteoblast Differentiation Limiting Asparagine Availability
Cited by: 21
Author(s): Martina Chiu, Denise Toscani, Valentina Marchica, Giuseppe Taurino, Federica Costa, Massimiliano G. Bianchi, Roberta Andreoli, Valentina Franceschi, Paola Storti, Jessica Burroughs‐Garcia, Rosa Alba Eufemiese, Benedetta Dalla Palma, Nicoletta Campanini, Eugenia Martella, Cristina Mancini, Jixiu Shan, Michael S. Kilberg, Giovanna D’Amico, Erica Dander, Luca Agnelli, Giancarlo Pruneri, Gaetano Donofrío, Ovidio Bussolati, Nicola Giuliani
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0058163
Pitfalls in Experimental Designs for Characterizing the Transcriptional, Methylational and Copy Number Changes of Oncogenes and Tumor Suppressor Genes
Cited by: 1
Author(s): Yuannv Zhang, Jiguang Xia, Yujing Zhang, Qing Yao, Da Yang, Lishuang Qi, Wenyuan Zhao, Chenguang Wang, Zheng Guo
Software Mentions: 1
Published: over 11 years ago
10.1038/srep34841
Network diffusion-based analysis of high-throughput data for the detection of differentially enriched modules
Cited by: 29
Author(s): Matteo Bersanelli, Ettore Mosca, Daniel Remondini, Gastone Castellani, Luciano Milanesi
Software Mentions: 1
Published: about 8 years ago
10.1038/srep42421
Integrated Analysis of LncRNA-mRNA Co-Expression Profiles in Patients with Moyamoya Disease
Cited by: 20
Author(s): Wen Wang, Faliang Gao, Zheng Zhao, Haoyuan Wang, Lu Zhang, Dong Zhang, Yan Zhang, Qing Lan, Jiangfei Wang, Jizong Zhao
Software Mentions: 1
Published: almost 8 years ago
10.1038/srep45960
Prognostic significance of huntingtin interacting protein 1 expression on patients with acute myeloid leukemia
Cited by: 12
Author(s): Jinghan Wang, Mengxia Yu, Qi Guo, Qiuling Ma, Chao Hu, Zeyu Ma, Xiufeng Yin, Xia Li, Yungui Wang, Hanzhang Pan, Dongmei Wang, Jiansong Huang, Haitao Meng, Hongyan Tong, W. Qian, Jie Jin
Software Mentions: 1
Published: over 7 years ago
10.1186/2047-783X-19-15
RETRACTED ARTICLE: Analysis of protein-protein interaction network and functional modules on primary osteoporosis
Cited by: 4
Author(s): Gai‐Li Li, Xianhua Xu, Bing-Ang Wang, Yi-Min Yao, Qin Yang, Shan Bai, Jian Rong, Tao Deng, Yonghe Hu
Software Mentions: 1
Published: over 10 years ago
10.1038/s41408-019-0253-1
Transcriptome analysis reveals significant differences between primary plasma cell leukemia and multiple myeloma even when sharing a similar genetic background
Cited by: 16
Author(s): Elizabeta A. Rojas, Luis A. Corchete, María Victoria Mateos, Ramón García‐Sanz, Irena Misiewicz-Krzemińska, Norma C. Gutiérrez
Software Mentions: 1
Published: about 5 years ago
10.3389/fcell.2021.701247
Hypoxia-Inducible Factor 2-Alpha Mediated Gene Sets Differentiate Pulmonary Arterial Hypertension
Cited by: 4
Author(s): Jinsheng Zhu, Li Zhao, Yadan Hu, Guoqi Cui, Ang Luo, Changlei Bao, Ying Han, Tong Zhou, Wenju Lu, Jian Wang, Stephen M. Black, Haiyang Tang
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0044818
Peripheral Blood Gene Expression as a Novel Genomic Biomarker in Complicated Sarcoidosis
Cited by: 69
Author(s): Tong Zhou, Wei Zhang, Nadera J. Sweiss, Edward S. Chen, David R. Möller, Kenneth S. Knox, Shwu Fan, Michael S. Wade, Imre Noth, Roberto F. Machado, Joe G.N. Garcia
Software Mentions: 1
Published: about 12 years ago
10.1186/1471-2164-15-28
Alterations in hepatic miRNA expression during negative energy balance in postpartum dairy cattle
Cited by: 21
Author(s): Attia Fatima, Sinéad M. Waters, Padraic O'Boyle, Cathal Seoighe, Deborah Morris
Software Mentions: 1
Published: almost 11 years ago
10.1016/j.stemcr.2018.01.007
The Satellite Cell Niche Regulates the Balance between Myoblast Differentiation and Self-Renewal via p53
Cited by: 40
Author(s): Valentina Flamini, Rachel S. Ghadiali, Philipp Antczak, Amy Rothwell, Jeremy E. Turnbull, Addolorata Pisconti
Software Mentions: 1
Published: over 6 years ago
10.1093/bioinformatics/btt511
SAMstrt: statistical test for differential expression in single-cell transcriptome with spike-in normalization
Cited by: 97
Author(s): Shintaro Katayama, Virpi Töhönen, Sten Linnarsson, Juha Kere
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0062982
Age-Specific Signatures of Glioblastoma at the Genomic, Genetic, and Epigenetic Levels
Cited by: 48
Author(s): Serdar Bozdag, Aiguo Li, Gregory Riddick, Yuri Kotliarov, Mehmet Baysan, Fábio M. Iwamoto, Margaret C. Cam, Svetlana Kotliarova, Howard A. Fine
Software Mentions: 1
Published: over 11 years ago