Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: rstan
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/rstan
R Interface to Stan
29 versions
Latest release: about 1 year ago
195 dependent packages
66,392 downloads last month
Papers Mentioning rstan 133
10.1002/eap.1615
Roads to ruin: conservation threats to a sentinel species across an urban gradientCited by: 54
Author(s): Blake E. Feist, Eric R. Buhle, David H. Baldwin, Julann A. Spromberg, Steven Damm, J. W. Davis, Nathaniel L. Scholz
Software Mentions: 1
Published: about 7 years ago
10.1002/eap.1875
Estimating effects of arable land use intensity on farmland birds using joint species modelingCited by: 14
Author(s): Martin Stjernman, Ullrika Sahlin, Ola Olsson, Henrik G. Smith
Software Mentions: 1
Published: over 5 years ago
10.1002/ece3.2742
Incidence of<i>Wolbachia</i>in aquatic insectsCited by: 53
Author(s): Eric J. Sazama, Michael J. Bosch, Carmelita S. Shouldis, Scot P. Ouellette, Jeff S. Wesner
Software Mentions: 1
Published: almost 8 years ago
10.1002/ece3.1484
Spatial and temporal variation in harvest probabilities for American black duckCited by: 10
Author(s): Christian Roy, Steven G. Cumming, Eliot J. B. McIntire
Software Mentions: 1
Published: over 9 years ago
10.1002/ece3.4693
Using functional traits to predict species growth trajectories, and cross‐validation to evaluate these models for ecological predictionCited by: 5
Author(s): Freya Thomas, Jian D. L. Yen, Peter A. Vesk
Software Mentions: 1
Published: almost 6 years ago
10.1002/ece3.7142
Abundance of montane salamanders over an elevational gradientCited by: 3
Author(s): Daniel J. Hocking, John A. Crawford, William E. Peterman, Joseph R. Milanovich
Software Mentions: 1
Published: almost 4 years ago
10.1007/s11356-016-8119-6
Assessment of questionnaire-based PCB exposure focused on food frequency in birth cohorts in JapanCited by: 3
Author(s): Akifumi Eguchi, Masae Otake, Masamichi Hanazato, Norimichi Suzuki, Yoshiharu Matsuno, Hiroko Nakaoka, Emiko Todaka, Chisato Mori
Software Mentions: 1
Published: almost 8 years ago
10.4178/epih.e2020072
An analysis of the disparity in smoking prevalence between urban and non-urban areas in Japan (2004–2019)Cited by: 13
Author(s): Tasuku Okui
Software Mentions: 1
Published: almost 4 years ago
10.1021/acsestwater.1c00185
Wildfire-Derived Pyrogenic Carbon Modulates Riverine Organic Matter and Biofilm Enzyme Activities in an In Situ Flume ExperimentCited by: 7
Author(s): Lukas Thuile Bistarelli, Caroline Poyntner, Cristina Santín, Stefan H. Doerr, Matthew V. Talluto, Gabriel Singer, Gabriel Sigmund
Software Mentions: 1
Published: over 3 years ago
10.2807/1560-7917.ES.2020.25.5.2000062
Incubation period of 2019 novel coronavirus (2019-nCoV) infections among travellers from Wuhan, China, 20–28 January 2020Cited by: 1,180
Author(s): J.A. Backer, Don Klinkenberg, Jacco Wallinga
Software Mentions: 1
Published: almost 5 years ago
10.1093/emph/eoab009
Epidemiological transitions in human evolution and the richness of viruses, helminths, and protozoaCited by: 6
Author(s): Caroline R. Amoroso, Charles L. Nunn
Software Mentions: 1
Published: almost 4 years ago
10.3389/fgene.2020.616160
ChIAMM: A Mixture Model for Statistical Analysis of Long-Range Chromatin Interactions From ChIA-PET ExperimentsCited by: 3
Author(s): Yibeltal Arega, Hao Jiang, Shuangqi Wang, Jingwen Zhang, Xiaohui Niu, Guoliang Li
Software Mentions: 1
Published: almost 4 years ago
10.3389/fmicb.2019.02239
Describing Uncertainty in Salmonella Thermal Inactivation Using Bayesian Statistical ModelingCited by: 14
Author(s): Kento Koyama, Zafiro Aspridou, Shigenobu Koseki, Konstantinos Koutsoumanis
Software Mentions: 1
Published: about 5 years ago
10.3389/fonc.2020.575461
Metastatic Breast Cancer and Pre-Diagnostic Blood Gene Expression Profiles—The Norwegian Women and Cancer (NOWAC) Post-Genome CohortCited by: 7
Author(s): Einar Holsbø, Anja Olsen
Software Mentions: 1
Published: about 4 years ago
10.3389/fpsyg.2020.608045
The Importance of Prior Sensitivity Analysis in Bayesian Statistics: Demonstrations Using an Interactive Shiny AppCited by: 39
Author(s): Sarah Depaoli, Sonja D. Winter, Marieke Visser
Software Mentions: 1
Published: almost 4 years ago
10.3389/fpsyg.2018.01921
Cultural Differences in Strength of Conformity Explained Through Pathogen Stress: A Statistical Test Using Hierarchical Bayesian EstimationCited by: 10
Author(s): Yutaka Horita, Masanori Takezawa
Software Mentions: 1
Published: about 6 years ago
10.1111/gcb.13361
Dry conditions disrupt terrestrial-aquatic linkages in northern catchmentsCited by: 13
Author(s): Erik J. S. Emilson, Brian W. Kielstra, Shelley E. Arnott, Shaun A. Watmough, John M. Gunn, Andrew J. Tanentzap
Software Mentions: 1
Published: over 8 years ago
10.1111/hiv.12829
Continuation of emtricitabine/lamivudine within combination antiretroviral therapy following detection of the M184V/I HIV‐1 resistance mutationCited by: 3
Author(s): Oliver Stirrup, David Asboe, Anton Pozniak, Caroline Sabin, Richard Gilson, NE Mackie, Anna Tostevin, Teresa Hill, D Dunn, David Chadwick, Duncan Churchill, Duncan A. Clark, Simon Collins, Valérie Delpech, Samuel Douthwaite, Esther Fearnhill, Kholoud Porter, Christophe Fraser, Anna Maria Geretti, Rory Gunson, Antony Hale, Stéphane Hué, Linda Lazarus, Andrew J. Leigh Brown, Tamyo Mbisa, Chloe Orkin, Eleni Nastouli, Deenan Pillay, Andrew Phillips, Erasmus Smit, Kate Templeton, Peter Tilston, Erik Volz, Ian Williams, Hongyi Zhang, Keith Fairbrother, Justine Dawkins, Siobhan O’Shea, Jane Mullen, Alison Cox, Richard D. Tandy, Tracy Fawcett, Mark Hopkins, Clare Booth, Ana Garcı́a-Dı́az, Lynne Renwick, Matthias Schmid, Brendan Payne, Jonathan Hubb, Simon Dustan, Stuart A. Kirk, Amanda Bradley‐Stewart, Jonathan Ainsworth, Sris Allan, Jane Anderson, Ade Apoola, I Fairley, Ashini Fox, Mark Gompels, Phillip Hay, Rajesh Hembrom, Margaret Johnson, Sophie José, Stephen Kegg, Clifford Leen, Dushyant Mital, Mark Nelson, Hajra Okhai, Adrian Palfreeman, Ashley B. Price, Frank A. Post, Jillian Pritchard, Achim Schwenk, Anjum Tariq, Roy Trevelion, Andy Ustianowski, John Walsh, Nadine Van Looy, Janet R. Lynch, James M. Hand, Stuart Tilbury, Elaney Youssef, Richard Daly, Sundhiya Mandalia, Sajid Munshi, Ade Adefisan, Chris Taylor, Zachary Gleisner, Fowzia Ibrahim, Lucy Campbell, Kirsty Baillie, Sheila Miller, Chris Wood, Mike Youle, Nicky Mackie, Alan Winston, Jonathan Weber, F Ramzan, Mark Carder, Andrew Kerr, David Wilks, Sheila Morris, Sue Allan, Adam Lewszuk, Victoria Ogunbiyi, Sue Mitchell, Christopher H. Hunt, Olanike Okolo, Benjamin Watts, Sarah Russell‐Sharpe, Olatunde Fagbayimu, Debra Brain, Liz Radford, Sarah Milgate, Shirley Cumming, Claire Atkinson, A Rose, Jeanette Smith, Cynthia Murphy, Ilise Gunder, Howard Gees, Gemma Squires, Laura Anderson, Serena Mansfield, L. Tomlinson, Christine LeHegerat, Roberta Box, Tom Hatton, Doreen Herbert, Ian McVittie, Victoria Murtha, Laura Shewan, Zak Connan, Luke M. Gregory, Kathleen Holding, Victoria Chester, Trusha Mistry, Catherine Gatford
Software Mentions: 1
Published: almost 5 years ago
10.1186/s40249-020-00785-1
COVID-19 case fatality risk by age and gender in a high testing setting in Latin America: Chile, March–August 2020Cited by: 67
Author(s): Eduardo A. Undurraga, Gerardo Chowell, Kenji Mizumoto
Software Mentions: 1
Published: almost 4 years ago
10.1111/irv.12453
Estimates of influenza and respiratory syncytial virus incidences with fraction modeling approach in Baguio City, the Philippines, 2012-2014Cited by: 5
Author(s): Taro Kamigaki, Portia P. Aldey, Edelwisa S. Mercado, Alvin G. Tan, Jenaline B. Javier, Socorro Lupisan, Hitoshi Oshitani, Veronica Tallo
Software Mentions: 1
Published: over 7 years ago
10.3390/jcm9061641
Estimating the Risk of COVID-19 Death during the Course of the Outbreak in Korea, February–May 2020Cited by: 32
Author(s): Eunha Shim, Kenji Mizumoto, Wongyeong Choi, Gerardo Chowell
Software Mentions: 1
Published: over 4 years ago
10.1098/rsos.172159
Family ties: the multilevel effects of households and kinship on the networks of individualsCited by: 26
Author(s): Jeremy Koster
Software Mentions: 1
Published: over 6 years ago
10.1098/rsos.182189
Data-driven mathematical model of East-Asian facial attractiveness: the relative contributions of shape and reflectance to attractiveness judgementsCited by: 14
Author(s): Koyo Nakamura, Katsumi Watanabe
Software Mentions: 1
Published: over 5 years ago
10.1098/rsos.210450
Estimating the reproducibility of social learning research published between 1955 and 2018Cited by: 7
Author(s): Riana Minocher, Silke Atmaca, Claudia Bavero, Richard McElreath, Bret Beheim
Software Mentions: 1
Published: about 3 years ago
10.1038/s41598-017-01021-x
A joint analysis of influenza-associated hospitalizations and mortality in Hong Kong, 1998–2013Cited by: 49
Author(s): Peng Wu, Anne M. Presanis, Helen S. Bond, Eric H. Y. Lau, Vicky J. Fang, Benjamin J. Cowling
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-018-26789-4
Association between oral health and general health indicators in older adultsCited by: 20
Author(s): Trung Dung Tran, Stefanie Krausch‐Hofmann, Joke Duyck, Johanna De Almeida Mello, Jan De Lepeleire, Dominique Declerck, Anja Declercq, Emmanuel Lesaffre
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-020-70454-8
Empagliflozin improves post-infarction cardiac remodeling through GTP enzyme cyclohydrolase 1 and irrespective of diabetes statusCited by: 18
Author(s): M.C. Asensio-López, Antonio Lax, Ascensión Vicente, Elena Saura Guillen, Antonio Miguel Hernández-Martínez, María Josefa Fernández del Palacio, Antoni Bayés‐Genís, Domingo A. Pascual-Figal
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-021-94421-z
Psychedelic drug use and schizotypy in young adultsCited by: 6
Author(s): Alexander V. Lebedev, Kasim Acar, Benjamín Garzón, Rita Almeida, Jesper Raback, Anders Åberg, Sebastian Martinsson, Andreas Olsson, Anaïs Louzolo, Philip Pärnamets, Martin Lövdén, Lauren Y. Atlas, Martin Ingvar, Predrag Petrović
Software Mentions: 1
Published: over 3 years ago
10.2196/27342
On-site Dining in Tokyo During the COVID-19 Pandemic: Time Series Analysis Using Mobile Phone Location DataCited by: 17
Author(s): Miharu Nakanishi, Ryosuke Shibasaki, Syudo Yamasaki, Satoshi Miyazawa, Satoshi Usami, Hiroshi Nishiura, Atsushi Nishida
Software Mentions: 1
Published: over 3 years ago
10.1093/infdis/jix283
Genital Chlamydia trachomatis Infections Clear More Slowly in Men Than Women, but Are Less Likely to Become EstablishedCited by: 19
Author(s): Joanna Lewis, Malcolm J Price, Patrick J Horner, Peter J White
Software Mentions: 1
Published: over 7 years ago
10.7554/eLife.62448
Protective effect of Mediterranean-type glucose-6-phosphate dehydrogenase deficiency against Plasmodium vivax malariaCited by: 18
Author(s): Ghulam Rahim Awab, Fahima Aaram, Natsuda Jamornthanyawat, Kanokon Suwannasin, Watcharee Pagornrat, James A Watson, Charles J. Woodrow, Arjen M. Dondorp, Day Npj., Mallika Imwong, Nicholas J. White
Software Mentions: 1
Published: almost 4 years ago
10.1007/s10928-018-9613-x
Development of a nonlinear hierarchical model to describe the disposition of deuterium in mother–infant pairs to assess exclusive breastfeeding practiceCited by: 20
Author(s): Zheng Liu, Aly Diana, Christine Slater, Thomas C. Preston, Rosalind S. Gibson, Lisa A Houghton, Stephen B. Duffull
Software Mentions: 1
Published: about 6 years ago
10.1186/s13023-020-01409-5
Transbronchial lung biopsy for the diagnosis of lymphangioleiomyomatosis: the severity of cystic lung destruction assessed by the modified Goddard scoring system as a predictor for establishing the diagnosisCited by: 2
Author(s): Shouichi Okamoto, Kazutoshi Suzuki, Takuo Hayashi, Keiko Muraki, Tetsutaro Nagaoka, Koichi Nishino, Yasuhito Sekimoto, Shin‐ichi Sasaki, Kazuhisa Takahashi, Kuniaki Seyama
Software Mentions: 1
Published: over 4 years ago