cran: rrBLUP | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0207627

Description of grain weight distribution leading to genomic selection for grain-filling characteristics in rice
Cited by: 24
Author(s): Shiori Yabe, Hiroyuki Yoshida, Hiromi Kajiya‐Kanegae, Mariko Yamasaki, Hiroyoshi Iwata, Kaworu Ebana, Takeshi Hayashi, Hiroshi Nakagawa
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0179191

Leveraging genomic prediction to scan germplasm collection for crop improvement
Cited by: 28
Author(s): Leonardo de Azevedo Peixoto, Tara C. Moellers, Jiaoping Zhang, Aaron J. Lorenz, William D. Beavis, Asheesh K. Singh
Software Mentions: 3
Published: over 7 years ago

10.1007/s00122-019-03276-6

Training population selection and use of fixed effects to optimize genomic predictions in a historical USA winter wheat panel
Cited by: 70
Author(s): Jose Martin Sarinelli, J. Paul Murphy, Priyanka Tyagi, James B. Holland, J. W. Johnson, Maryati Mohamed, Richard E. Mason, Ali Babar, Stephen A. Harrison, Russell Sutton, Carl A. Griffey, Gina Brown-Guedira
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pgen.1009580

Genetics of white color and iridophoroma in “Lemon Frost” leopard geckos
Cited by: 10
Author(s): Longhua Guo, Joshua S. Bloom, Steve Sykes, Elaine Huang, Zain Kashif, Elise Pham, Katarina Ho, Ana Alcaraz, Xinshu Xiao, Sandra Duarte‐Vogel, Leonid Kruglyak
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-019-55338-w

Genome wide association study of 5 agronomic traits in olive (Olea europaea L.)
Cited by: 17
Author(s): Hilal Betül Kaya, Deniz Akdemir, Roberto Lozano, Öznur Çetin, Hulya Sozer Kaya, Mustafa Şahi̇n, Jenny L. Smith, Bahattin Tanyolaç, Jean‐Luc Jannink
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12864-016-3170-8

Numerous genetic loci identified for drought tolerance in the maize nested association mapping populations
Cited by: 52
Author(s): Chunhui Li, Bo Sun, Yongxiang Li, Cheng Liu, Xun Wu, Dengfeng Zhang, Yunsu Shi, Yi Song, Edward S. Buckler, Zhiwu Zhang, Tianyu Wang, Yu Liu
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-020-69381-5

Prospects of GWAS and predictive breeding for European winter wheat’s grain protein content, grain starch content, and grain hardness
Cited by: 37
Author(s): Quddoos H. Muqaddasi, Jonathan Brassac, Erhard Ebmeyer, Sonja Kollers, Viktor Korzun, O. Argillier, Gunther Stiewe, Jörg Plieske, Martin W. Ganal, Marion S. Röder
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0243666

Quantile regression in genomic selection for oligogenic traits in autogamous plants: A simulation study
Cited by: 4
Author(s): Gabriela França Oliveira, Ana Carolina Campana Nascimento, Moysés Nascimento, Isabela de Castro Sant’Anna, Juan Vicente Romero, Camila Ferreira Azevedo, Leonardo Lopes Bhering, Eveline Teixeira Caixeta Moura
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-021-82437-4

Population structure, genetic diversity and genomic selection signatures among a Brazilian common bean germplasm
Cited by: 38
Author(s): Jéssica Delfini, Vânia Moda-Cirino, José dos Santos Neto, Paulo Maurício Ruas, Gustavo César Sant’Ana, Paul Gepts, Leandro Simões Azeredo Gonçalves
Software Mentions: 3
Published: almost 4 years ago

10.3390/ijms22179311

Genetic Dissection of Phosphorus Use Efficiency in a Maize Association Population under Two P Levels in the Field
Cited by: 9
Author(s): Dongdong Li, Haoying Wang, Meng Wang, Guoliang Li, Zhe Chen, Willmar L. Leiser, Thea Mi Weiß, Xiaohuan Lu, Ming Wang, Shaojiang Chen, Fanjun Chen, Lixing Yuan, Tobias Würschum, Wenxin Liu
Software Mentions: 2
Published: about 3 years ago

10.1186/s12859-014-0398-7

solGS: a web-based tool for genomic selection
Cited by: 16
Author(s): Isaak Y. Tecle, Jeremy D. Edwards, Naama Menda, Chiedozie Egesi, Ismail Rabbi, Peter Kulakow, R. Kawuki, Jean‐Luc Jannink, Lukas A. Mueller
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12863-018-0613-z

Genomic prediction of crown rust resistance in Lolium perenne
Cited by: 24
Author(s): Sai Krishna Arojju, Patrick Conaghan, Susanne Barth, Dan Milbourne, Michael D. Casler, Trevor R. Hodkinson, Thibauld Michel, Stephen Byrne
Software Mentions: 2
Published: over 6 years ago

10.1186/s12863-019-0785-1

Accuracy of genomic selection for grain yield and agronomic traits in soft red winter wheat
Cited by: 52
Author(s): Dennis N. Lozada, Richard E. Mason, Jose Martin Sarinelli, Gina Brown-Guedira
Software Mentions: 2
Published: about 5 years ago

10.1186/s12864-020-07319-x

A review of deep learning applications for genomic selection
Cited by: 101
Author(s): Osval A. Montesinos-L֯ópez, Abelardo Montesinos‐López, Paulino Pérez‐Rodríguez, José Alberto Barrón-López, Johannes W. R. Martini, Silvia Fajardo-Flores, Laura S. Gaytán-Lugo, Pedro C. Santana-Mancilla, J. Crossa
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12864-016-3120-5

Ascertainment bias from imputation methods evaluation in wheat
Cited by: 5
Author(s): Sofía P. Brandariz, Agustín González Reymúndez, Bettina Lado, Marcos Malosetti, Antônio Augusto Franco Garcia, Martín Quincke, Jarislav von Zitzewitz, Marina Castro, Iván Matus, Alejandro del Pozo, Ariel J. Castro, Lucı́a Gutiérrez
Software Mentions: 2
Published: about 8 years ago

10.1186/s12864-020-6737-3

Effect of number of annual rings and tree ages on genomic predictive ability for solid wood properties of Norway spruce
Cited by: 11
Author(s): Linghua Zhou, Zhiqiang Chen, Lars E. Olsson, Thomas Grahn, Bo Karlsson, Harry X. Wu, Sven‐Olof Lundqvist, María Rosario García‐Gil
Software Mentions: 2
Published: over 4 years ago

10.1186/s12864-019-5920-x

Pea genomic selection for Italian environments
Cited by: 28
Author(s): Paolo Annicchiarico, Nelson Espinoza N., L. Pecetti, Massimo Romani, Luigi Russi
Software Mentions: 2
Published: over 5 years ago

10.3390/biology10080756

Evaluation of Genomic Prediction for Fusarium Head Blight Resistance with a Multi-Parental Population
Cited by: 7
Author(s): Wentao Zhang, Kerry Boyle, Anita L. Brûlé‐Babel, George Fedak, Peng Gao, Zeinab Robleh Djama, Brittany Polley, Richard D. Cuthbert, H. S. Randhawa, R. J. Graf, Fengying Jiang, François Eudes, Pierre R. Fobert
Software Mentions: 2
Published: over 3 years ago

10.1186/s40168-019-0699-1

Host genetics influence the rumen microbiota and heritable rumen microbial features associate with feed efficiency in cattle
Cited by: 189
Author(s): Fuyong Li, Changxi Li, Yanhong Chen, Junhong Liu, Chunyan Zhang, Barry Irving, Carolyn Fitzsimmons, Graham Plastow, Le Luo Guan
Software Mentions: 2
Published: over 5 years ago

10.1093/molbev/msx155

Natural Variation in the Distribution and Abundance of Transposable Elements Across the Caenorhabditis elegans Species
Cited by: 59
Author(s): Kristen M. Laricchia, Stefan Zdraljevic, Daniel E. Cook, Erik C. Andersen
Software Mentions: 2
Published: over 7 years ago

10.1093/molbev/msaa085

The Origin of Additive Genetic Variance Driven by Positive Selection
Cited by: 3
Author(s): Li Liu, Yayu Wang, Di Zhang, Zhuoxin Chen, Xiaoshu Chen, Zhijian Su, Xionglei He
Software Mentions: 2
Published: over 4 years ago

10.1007/s11032-018-0802-5

Genomic prediction applied to high-biomass sorghum for bioenergy production
Cited by: 25
Author(s): Amanda Avelar de Oliveira, Maria Marta Pastina, Vander Filipe de Souza, R. A. da C. Parrella, R. W. Noda, M. L. F. Simeone, R. E. Schaffert, J. V. de Magalhães, C. M. B. Damasceno, Gabriel Rodrigues Alves Margarido
Software Mentions: 2
Published: over 6 years ago

10.1007/s11032-016-0504-9

Potential of marker selection to increase prediction accuracy of genomic selection in soybean (Glycine max L.)
Cited by: 39
Author(s): Yue Ma, Jochen C. Reif, Yong Jiang, Wen Zhang, Dechun Wang, Zhangxiong Liu, Yong Guo, Shuhong Wei, Shuming Wang, Cheng‐Yao Yang, Huicai Wang, Chen Yang, Weiguo Lu, Ran Xu, Rong Zhou, Ruizhen Wang, Zheng Sun, Huaizhu Chen, Wanhai Zhang, Ji-an Wu, Guohua Hu, Chunyan Liu, Xin L, Ya-Shu Fu, Guo Tai, Tianfu Han, Mengchen Zhang, Bincheng Sun, Lei Zhang, Weiyuan Chen, Cunxiang Wu, Shi Sun, Baojun Yuan, Xinan Zhou, Dejun Han, Huihuang Yan, Wenbin Li, Lijuan Qiu
Software Mentions: 2
Published: over 8 years ago

10.1016/j.xplc.2019.100005

Enhancing Genetic Gain through Genomic Selection: From Livestock to Plants
Cited by: 126
Author(s): Yunbi Xu, Xiaogang Liu, Junjie Fu, Hongwu Wang, Jiankang Wang, Changling Huang, B. M. Prasanna, Michael Olsen, Guoying Wang, Aimin Zhang
Software Mentions: 2
Published: almost 5 years ago

10.1186/s13007-019-0419-7

Accuracy assessment of plant height using an unmanned aerial vehicle for quantitative genomic analysis in bread wheat
Cited by: 69
Author(s): Muhammad Adeel Hassan, Mengjiao Yang, Luping Fu, Awais Rasheed, Bangyou Zheng, Xianchun Xia, Yonggui Xiao, Zhonghu He
Software Mentions: 2
Published: over 5 years ago

10.3390/plants10091845

Regional Heritability Mapping of Quantitative Trait Loci Controlling Traits Related to Growth and Productivity in Popcorn (Zea mays L.)
Cited by: 3
Author(s): Gabrielle Sousa Mafra, Janeo Eustáquio de Almeida Filho, Antônio Teixeira do Amaral, Carlos Maldonado, Samuel Henrique Kamphorst, Valter Jário de Lima, Divino Rosa dos Santos, Jhean Torres Leite, Pedro Henrique Araújo Diniz Santos, Talles de Oliveira Santos, Rosimeire Barboza Bispo, Uéliton Alves de Oliveira, Vitor Batista Pinto, Caio Cézar Guedes Corrêa, Sunny Ahmar, Freddy Mora‐Poblete
Software Mentions: 2
Published: about 3 years ago

10.3390/plants9010099

Genomic Predictions Using Low-Density SNP Markers, Pedigree and GWAS Information: A Case Study with the Non-Model Species Eucalyptus cladocalyx
Cited by: 19
Author(s): Paulina Ballesta, David R. Bush, Fabyano Fonseca e Silva, Freddy Mora
Software Mentions: 2
Published: almost 5 years ago

10.3390/plants10050895

Genome-Wide Association and Prediction of Male and Female Floral Hybrid Potential Traits in Elite Spring Bread Wheat Genotypes
Cited by: 3
Author(s): Samira El Hanafi, S. Cherkaoui, Zakaria Kehel, Ayed Al‐Abdallat, Wuletaw Tadesse
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pgen.1006891

Natural variation in a single amino acid substitution underlies physiological responses to topoisomerase II poisons
Cited by: 68
Author(s): Stefan Zdraljevic, Christine Strand, Hannah S. Seidel, Daniel E. Cook, John G. Doench, Erik C. Andersen
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0102715

Marker-Based Estimation of Genetic Parameters in Genomics
Cited by: 6
Author(s): Zhiqiu Hu, Rong‐Cai Yang
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0205629

Training set optimization of genomic prediction by means of EthAcc
Cited by: 24
Author(s): Brigitte Mangin, Renaud Rincent, Charles-Elie Rabier, Laurence Moreau, Ellen Goudemand-Dugué
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0138903

Variable-Selection Emerges on Top in Empirical Comparison of Whole-Genome Complex-Trait Prediction Methods
Cited by: 18
Author(s): David Haws, Irina Rish, Simon Teyssèdre, Dan He, Aurélie Lozano, Prabhanjan Kambadur, Zivan Karaman, Laxmi Parida
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0136594

Accuracy of Genomic Selection in a Rice Synthetic Population Developed for Recurrent Selection Breeding
Cited by: 80
Author(s): Cécile Grenier, Tuong-Vi Cao, Yolima Ospina, Constanza Quintero, Marc Châtel, Joe Tohmé, B. Courtois, Nourollah Ahmadi
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0162860

Breeding Value of Primary Synthetic Wheat Genotypes for Grain Yield
Cited by: 44
Author(s): Jafar Jafarzadeh, David Bonnett, Jean‐Luc Jannink, Deniz Akdemir, Susanne Dreisigacker, Mark E. Sorrells
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0192116

Genome-wide association study to identify candidate loci and genes for Mn toxicity tolerance in rice
Cited by: 17
Author(s): Asis Shrestha, Ambrose Kwaku Dziwornu, Yoshiaki Ueda, Lijia Wu, Boby Mathew, Michael Frei
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0240059

High density genotype storage for plant breeding in the Chado schema of Breedbase
Cited by: 5
Author(s): Nicolás Morales, Guillaume Bauchet, Titima Tantikanjana, Adrian F. Powell, Bryan Ellerbrock, Isaak Y. Tecle, Lukas A. Mueller
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0218747

Quantitative genetic parameters for growth and wood properties in Eucalyptus “urograndis” hybrid using near-infrared phenotyping and genome-wide SNP-based relationships
Cited by: 27
Author(s): Bruno Marco de Lima, Eduardo P. Cappa, Orzenil B. Silva‐Junior, Carla Costa Garcia, Shawn D. Mansfield, Dário Grattapaglia
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2020.567757

Approximate Genome-Based Kernel Models for Large Data Sets Including Main Effects and Interactions
Cited by: 14
Author(s): Jaime Cuevas, Osval A. Montesinos-L֯ópez, Johannes W. R. Martini, Paulino Pérez‐Rodríguez, Morten Lillemo, José Crossa
Software Mentions: 2
Published: about 4 years ago

10.3389/fpls.2021.703419

Reciprocal Recurrent Genomic Selection Is Impacted by Genotype-by-Environment Interactions
Cited by: 2
Author(s): Maximilian Rembe, Jochen C. Reif, Erhard Ebmeyer, Patrick Thorwarth, Viktor Korzun, Johannes Schacht, Philipp H. G. Boeven, Pierrick Varenne, Ebrahim Kazman, Norman Philipp, Sonja Kollers, Nina Pfeiffer, C. Friedrich H. Longin, Niklas Hartwig, Mario Gils, Yusheng Zhao
Software Mentions: 2
Published: about 3 years ago

10.3389/fpls.2019.00832

Proteomic Data Integration Highlights Central Actors Involved in Einkorn (Triticum monococcum ssp. monococcum) Grain Filling in Relation to Grain Storage Protein Composition
Cited by: 2
Author(s): Emmanuelle Bancel, Titouan Bonnot, Marlène Davanture, David Álvarez, Michel Zivy, Pierre Martre, Sébastien Dejean, Catherine Ravel
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2019.00566

Genetic Correlations Between Photosynthetic and Yield Performance in Maize Are Different Under Two Heat Scenarios During Flowering
Cited by: 18
Author(s): Vlatko Galić, Mario Franić, Antun Jambrović, Tatjana Ledenčan, Andrija Brkić, Zvonimir Zdunić, Domagoj Šimić
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2016.01061

Genome-Wide Association Mapping in the Global Diversity Set Reveals New QTL Controlling Root System and Related Shoot Variation in Barley
Cited by: 36
Author(s): Stephan Reinert, Annika Kortz, Jens Léon, Ali Ahmad Naz
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2021.624156

Genome-Wide Association Study and Genomic Prediction for Soybean Cyst Nematode Resistance in USDA Common Bean (Phaseolus vulgaris) Core Collection
Cited by: 17
Author(s): Ainong Shi, Paul Gepts, Qijian Song, Haizheng Xiong, Thomas E. Michaels, Senyu Chen
Software Mentions: 2
Published: over 3 years ago

10.3389/fpls.2017.01182

Searching for an Accurate Marker-Based Prediction of an Individual Quantitative Trait in Molecular Plant Breeding
Cited by: 22
Author(s): Yong‐Bi Fu, Mo-Hua Yang, Fangqin Zeng, Bill Biligetu
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2020.613325

Deep Learning for Predicting Complex Traits in Spring Wheat Breeding Program
Cited by: 60
Author(s): Karansher Singh Sandhu, Dennis N. Lozada, Zhiwu Zhang, Michael O. Pumphrey, Arron H. Carter
Software Mentions: 2
Published: almost 4 years ago

10.3389/fpls.2019.00394

High-Throughput Phenotyping Enabled Genetic Dissection of Crop Lodging in Wheat
Cited by: 98
Author(s): Daljit Singh, Xu Wang, Uttam Kumar, Liangliang Gao, Muhammad Noor, Muhammad Imtiaz, Ravi P. Singh, Jesse Poland
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2017.00886

Genome-Wide Association Study of Grain Architecture in Wild Wheat Aegilops tauschii
Cited by: 63
Author(s): Sanu Arora, Narinder Singh, Satinder Kaur, N. S. Bains, Cristóbal Uauy, Jesse Poland, Parveen Chhuneja
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2016.00133

Implementation of Genomic Prediction in Lolium perenne (L.) Breeding Populations
Cited by: 57
Author(s): Nastasiya F. Grinberg, Alan Lovatt, Matthew J. Hegarty, Andi Lovatt, Kirsten P. Skøt, Rhys Kelly, Tina Blackmore, Daniel Thorogood, Ross D. King, Ian Armstead, W. Powell, Leif Skøt
Software Mentions: 2
Published: almost 9 years ago

10.3389/fpls.2018.00366

Genomic Selection Outperforms Marker Assisted Selection for Grain Yield and Physiological Traits in a Maize Doubled Haploid Population Across Water Treatments
Cited by: 61
Author(s): Diego Cerrudo, Sen Cao, Yibing Yuan, Carlos Alberto Martínez, Edgar Antonio Suarez, Raman Babu, Xuecai Zhang, Samuel Trachsel
Software Mentions: 2
Published: over 6 years ago

10.1534/g3.112.005363

Imputation of Unordered Markers and the Impact on Genomic Selection Accuracy
Cited by: 143
Author(s): Jessica Rutkoski, Jesse Poland, Jean‐Luc Jannink, Mark E. Sorrells
Software Mentions: 2
Published: over 11 years ago

10.1534/g3.116.032888

Canopy Temperature and Vegetation Indices from High-Throughput Phenotyping Improve Accuracy of Pedigree and Genomic Selection for Grain Yield in Wheat
Cited by: 270
Author(s): Jessica Rutkoski, Jesse Poland, Suchismita Mondal, Enrique Autrique, Lorena González Pérez, José Crossa, M.P. Reynolds, Ravi P. Singh
Software Mentions: 2
Published: about 8 years ago

10.1534/g3.116.035220

Genomic Prediction of Resistance to Pasteurellosis in Gilthead Sea Bream (Sparus aurata) Using 2b-RAD Sequencing
Cited by: 86
Author(s): Christos Palaiokostas, Serena Ferraresso, Rafaella Franch, Ross D. Houston, Luca Bargelloni
Software Mentions: 2
Published: about 8 years ago

10.1534/g3.116.035162

Correlations of Genotype with Climate Parameters Suggest Caenorhabditis elegans Niche Adaptations
Cited by: 24
Author(s): Kathryn Evans, Yuehui Zhao, Shannon C. Brady, Lijiang Long, Patrick T. McGrath, Erik C. Andersen
Software Mentions: 2
Published: almost 8 years ago

10.1534/g3.118.200710

Training Population Optimization for Prediction of Cassava Brown Streak Disease Resistance in West African Clones
Cited by: 21
Author(s): Alfred Ozimati, Robert Kawuki, Williams Esuma, Siraj Ismail Kayondo, Marnin D. Wolfe, Roberto Lozano, Ismail Rabbi, Peter Kulakow, Jean‐Luc Jannink
Software Mentions: 2
Published: almost 6 years ago

10.1534/g3.118.200856

Hyperspectral Reflectance-Derived Relationship Matrices for Genomic Prediction of Grain Yield in Wheat
Cited by: 85
Author(s): Margaret Krause, Lorena González Pérez, José Crossa, Paulino Pérez‐Rodríguez, Osval A. Montesinos-L֯ópez, Ravi P. Singh, Susanne Dreisigacker, Jesse Poland, Jessica Rutkoski, Mark E. Sorrells, Michael A. Gore, Suchismita Mondal
Software Mentions: 2
Published: over 5 years ago

10.1534/g3.119.400073

Genome-Wide Association Study of Yield Component Traits in Intermediate Wheatgrass and Implications in Genomic Selection and Breeding
Cited by: 27
Author(s): Prabin Bajgain, Xiaofei Zhang, James A. Anderson
Software Mentions: 2
Published: over 5 years ago

10.1534/g3.119.400498

Benchmarking Parametric and Machine Learning Models for Genomic Prediction of Complex Traits
Cited by: 88
Author(s): Christina B. Azodi, Emily Bolger, Andrew McCarren, Mark Roantree, Gustavo de los Campos, Shin-Han Shiu
Software Mentions: 2
Published: about 5 years ago

10.1534/g3.119.400880

Genomic Predictive Ability for Foliar Nutritive Traits in Perennial Ryegrass
Cited by: 17
Author(s): Sai Krishna Arojju, Mingshu Cao, M. Z. Z. Jahufer, Brent Barrett, Marty J. Faville
Software Mentions: 2
Published: almost 5 years ago

10.1093/g3journal/jkab122

On the use of GBLUP and its extension for GWAS with additive and epistatic effects
Cited by: 8
Author(s): Jie Zhang, Fang Liu, Jochen C. Reif, Yong Jiang
Software Mentions: 2
Published: over 3 years ago

10.3390/genes12071013

Genome-Wide Association Study Reveals a Genomic Region Associated with Mite-Recruitment Phenotypes in the Domesticated Grapevine (Vitis vinifera)
Cited by: 3
Author(s): Erika LaPlante, Margaret B. Fleming, Zoë Migicovsky, Marjorie G. Weber
Software Mentions: 2
Published: over 3 years ago

10.1186/s12711-015-0148-y

A new SNP-based vision of the genetics of sex determination in European sea bass (Dicentrarchus labrax)
Cited by: 78
Author(s): Christos Palaiokostas, Michaël Bekaert, John B. Taggart, Karim Gharbi, Brendan McAndrew, Béatrice Chatain, David J. Penman, Marc Vandeputte
Software Mentions: 2
Published: about 9 years ago

10.1186/s13059-021-02481-1

Genomic basis underlying the metabolome-mediated drought adaptation of maize
Cited by: 32
Author(s): Fei Zhang, Jinfeng Wu, Nir Sade, Si Wu, Aiman Egbaria, Alisdair R. Fernie, Jianbing Yan, Feng Qin, Wei Chen, Yariv Brotman, Mingqiu Dai
Software Mentions: 2
Published: about 3 years ago

10.1186/s13059-021-02492-y

LightGBM: accelerated genomically designed crop breeding through ensemble learning
Cited by: 60
Author(s): Jun Yan, Yuetong Xu, Qian Cheng, Shuqin Jiang, Qian Wang, Yingjie Xiao, Chuang Ma, Jianbing Yan, Xiangfeng Wang
Software Mentions: 2
Published: about 3 years ago

10.1186/s13059-021-02488-8

Genomic insight into balancing high yield, good quality, and blast resistance of japonica rice
Cited by: 30
Author(s): Ning Xiao, Cunhong Pan, Yuhong Li, Yanyou Wu, Yingfan Cai, Yue Lu, Ruyi Wang, Ling Yu, Wei Shi, Houxiang Kang, Zhaobing Zhu, Niansheng Huang, Xiaoxiang Zhang, Zichun Chen, Jianju Liu, Zefeng Yang, Yuping Ning, Aihong Li
Software Mentions: 2
Published: about 3 years ago

10.1038/s41438-019-0190-y

Genome-wide association studies in apple reveal loci of large effect controlling apple polyphenols
Cited by: 44
Author(s): Kendra A. McClure, YuiHui Gong, Jun Song, Melinda Vinqvist‐Tymchuk, Leslie Campbell Palmer, Lihua Fan, Karen Burgher-MacLellan, Zhaoqi Zhang, Jean‐Marc Celton, Charles F. Forney, Zoë Migicovsky, Sean Myles
Software Mentions: 2
Published: about 5 years ago

10.1038/hortres.2017.35

Patterns of genomic and phenomic diversity in wine and table grapes
Cited by: 59
Author(s): Zoë Migicovsky, Jason Sawler, Kyle M. Gardner, Mallikarjuna K. Aradhya, Bernard Prins, Heidi Schwaninger, Carlos D. Bustamante, Edward S. Buckler, Gan Yuan Zhong, Patrick J. Brown, Sean Myles
Software Mentions: 2
Published: over 7 years ago

10.1093/jxb/erx339

Genetic relationships between spring emergence, canopy phenology, and biomass yield increase the accuracy of genomic prediction in Miscanthus
Cited by: 13
Author(s): Christopher L. Davey, P. R. H. Robson, Sarah Hawkins, Kerrie Farrar, John Clifton‐Brown, Iain S. Donnison, Gancho Slavov
Software Mentions: 2
Published: about 7 years ago

10.1186/s12284-019-0281-2

Exploring the genetic diversity within traditional Philippine pigmented Rice
Cited by: 12
Author(s): Edwige Gaby Nkouaya Mbanjo, Huw Jones, Xavier Greg Caguiat, S. Carandang, John Carlos I. Ignacio, Marilyn C. Ferrer, Lesley A. Boyd, Tobias Kretzschmar
Software Mentions: 2
Published: over 5 years ago

10.1186/s12284-019-0311-0

1k-RiCA (1K-Rice Custom Amplicon) a novel genotyping amplicon-based SNP assay for genetics and breeding applications in rice
Cited by: 37
Author(s): Juan David Arbelaez, Maria Stefanie Dwiyanti, Erwin Tandayu, Krizzel Jessica E Llantada, Annalhea Jarana, John Carlos I. Ignacio, John Damien Platten, Joshua N. Cobb, Jessica Rutkoski, Michael J. Thomson, Tobias Kretzschmar
Software Mentions: 2
Published: over 5 years ago

10.1038/srep19454

A simulation-based breeding design that uses whole-genome prediction in tomato
Cited by: 52
Author(s): Eiji Yamamoto, Hiroshi Matsunaga, Akio Onogi, Hiromi Kajiya‐Kanegae, Mai F. Minamikawa, Akira Suzuki, Kenta Shirasawa, Hideki Hirakawa, Toshiro Nunome, Haruhisa Yamaguchi, Koji Miyatake, Akio Ohyama, Hiroyoshi Iwata, Hiroyuki Fukuoka
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-02602-6

Genomic Selection in Commercial Perennial Crops: Applicability and Improvement in Oil Palm (Elaeis guineensis Jacq.)
Cited by: 40
Author(s): Qi Bin Kwong, Ai Ling Ong, Chee Keng Teh, Fook Tim Chew, Martti T. Tammi, Sean Mayes, Harikrishna Kulaveerasingam, Suat Hui Yeoh, Jennifer Ann Harikrishna, David R. Appleton
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-38081-6

Design of training populations for selective phenotyping in genomic prediction
Cited by: 63
Author(s): Deniz Akdemir, Julio Isidro-Sánchez
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-59004-4

Genome-wide and SNP network analyses reveal genetic control of spikelet sterility and yield-related traits in wheat
Cited by: 23
Author(s): Ahmad M. Alqudah, Jemanesh K. Haile, Dalia Z. Alomari, Curtis Pozniak, Borislav Kobiljski, Andreas Börner
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-76759-y

GMStool: GWAS-based marker selection tool for genomic prediction from genomic data
Cited by: 16
Author(s): Seongmun Jeong, Jaeyoon Kim, Namshin Kim
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-021-92537-w

Deterministic and stochastic modelling of impacts from genomic selection and phenomics on genetic gain for perennial ryegrass dry matter yield
Cited by: 3
Author(s): M. Z. Z. Jahufer, Sai Krishna Arojju, Marty J. Faville, Kioumars Ghamkhar, Dongwen Luo, Vivi N. Arief, Wen-Hsi Yang, Mingzhu Sun, I. H. DeLacy, Andrew G. Griffiths, Colin Eady, Will Clayton, Alan V. Stewart, Richard George, Valerio Hoyos‐Villegas, K. E. Basford, Brent Barrett
Software Mentions: 2
Published: over 3 years ago

10.1007/s00122-015-2622-x

Reparametrization-based estimation of genetic parameters in multi-trait animal model using Integrated Nested Laplace Approximation
Cited by: 14
Author(s): Boby Mathew, Anna Marie Holand, Petri Koistinen, Jens Léon, Mikko J. Sillanpää
Software Mentions: 2
Published: about 9 years ago

10.1007/s00122-017-2897-1

Genomic and pedigree-based prediction for leaf, stem, and stripe rust resistance in wheat
Cited by: 72
Author(s): Philomin Juliana, Ravi P. Singh, Pawan Kumar Singh, José Crossa, Julio Huerta Espino, Caixia Lan, Sridhar Bhavani, Jessica Rutkoski, Jesse Poland, Gary C. Bergstrom, Mark E. Sorrells
Software Mentions: 2
Published: over 7 years ago

10.1007/s00122-018-3065-y

Single and multiple phenotype QTL analyses of downy mildew resistance in interspecific grapevines
Cited by: 34
Author(s): Konstantin Divilov, Paola Barba, Lance Cadle‐Davidson, Bruce I. Reisch
Software Mentions: 2
Published: almost 7 years ago

10.1007/s00122-021-03909-9

From gene banks to farmer’s fields: using genomic selection to identify donors for a breeding program in rice to close the yield gap on smallholder farms
Cited by: 6
Author(s): Reisaku Tanaka, Sarah Tojo Mandaharisoa, Mbolatantely Rakotondramanana, Harisoa Nicole Ranaivo, Juan Pariasca‐Tanaka, Hiromi Kajiya‐Kanegae, Hiroyoshi Iwata, Matthias Wissuwa
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms21041342

Genomic Prediction for Grain Yield and Yield-Related Traits in Chinese Winter Wheat
Cited by: 26
Author(s): Mohsin Ali, Zhang Yong, Awais Rasheed, Jiankang Wang, Luyan Zhang
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms21072414

Development and Proof-of-Concept Application of Genome-Enabled Selection for Pea Grain Yield under Severe Terminal Drought
Cited by: 14
Author(s): Paolo Annicchiarico, Nelson Espinoza N., Meriem Laouar, Imane Thami-Alami, Massimo Romani, L. Pecetti
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-2229-14-49

Genetic and biochemical differences in populations bred for extremes in maize grain methionine concentration
Cited by: 10
Author(s): Mark A. Newell, Karla Elizabeth Vogel, Marie Adams, Nevzat Aydın, Anastasia L. Bodnar, Muhammad Ali, Adrienne N. Moran Lauter, M. Paul Scott
Software Mentions: 1
Published: almost 11 years ago

10.3389/fpls.2017.00421

High-Throughput Phenotyping of Sorghum Plant Height Using an Unmanned Aerial Vehicle and Its Application to Genomic Prediction Modeling
Cited by: 184
Author(s): Katsuaki Watanabe, Wei Guo, Keigo Arai, Hideki Takanashi, Hiromi Kajiya‐Kanegae, Mariko Kobayashi, Kentarô Yano, Tsuyoshi Tokunaga, Toru Fujiwara, Nobuhiro Tsutsumi, Hiroyoshi Iwata
Software Mentions: 1
Published: over 7 years ago

10.3389/fgene.2019.01224

GWAS-Assisted Genomic Prediction to Predict Resistance to Septoria Tritici Blotch in Nordic Winter Wheat at Seedling Stage
Cited by: 39
Author(s): Firuz Odilbekov, Rita Armonienė, Alexander Koc, Jan T. Svensson, Aakash Chawade
Software Mentions: 1
Published: almost 5 years ago

10.1007/s00122-017-3003-4

Comparison of GWAS models to identify non-additive genetic control of flowering time in sunflower hybrids
Cited by: 30
Author(s): Fanny Bonnafous, Ghislain Fievet, Nicolas Blanchet, Marie‐Claude Boniface, Sébastien Carrère, Jérôme Gouzy, Ludovic Legrand, Gwenola Marage, Emmanuelle Bret-Mestries, Stéphane Muños, Nicolas Pouilly, Patrick Vincourt, Nicolas Langlade, Brigitte Mangin
Software Mentions: 1
Published: about 7 years ago

10.1186/s12864-017-3991-0

Use of genotyping-by-sequencing to determine the genetic structure in the medicinal plant chamomile, and to identify flowering time and alpha-bisabolol associated SNP-loci by genome-wide association mapping
Cited by: 25
Author(s): Lars‐Gernot Otto, Prodyut Mondal, Jonathan Brassac, Susanne Preiß, Jörg Degenhardt, Sang He, Jochen C. Reif, Timothy F. Sharbel
Software Mentions: 1
Published: over 7 years ago

10.1186/s12711-018-0401-2

Genome-wide association and genomic prediction of resistance to viral nervous necrosis in European sea bass (Dicentrarchus labrax) using RAD sequencing
Cited by: 79
Author(s): Christos Palaiokostas, Sophie Cariou, Anastasia Bestin, Jean-Sébastien Bruant, Pierrick Haffray, Thierry Morin, Jean-Yves Cabon, François Allal, Marc Vandeputte, Ross D. Houston
Software Mentions: 1
Published: over 6 years ago

10.1534/genetics.119.302286

A Novel Gene Underlies Bleomycin-Response Variation in Caenorhabditis elegans
Cited by: 41
Author(s): Shannon C. Brady, Stefan Zdraljevic, Karol W. Bisaga, Robyn E. Tanny, Daniel E. Cook, Daehan Lee, Ye Wang, Erik C. Andersen
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2019.00543

Optimizing Genomic Prediction of Host Resistance to Koi Herpesvirus Disease in Carp
Cited by: 39
Author(s): Christos Palaiokostas, Tomáš Veselý, Martin Kocour, Martin Prchal, Dagmar Pokorová, Veronika Piačková, Ľubomír Pojezdal, Ross D. Houston
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.661742

Genome-Wide Association Analysis and Genomic Prediction for Adult-Plant Resistance to Septoria Tritici Blotch and Powdery Mildew in Winter Wheat
Cited by: 26
Author(s): Admas Alemu, Gintaras Brazauskas, David Sewordor Gaikpa, Tina Henriksson, Bulat Islamov, Lise Nistrup Jørgensen, Mati Koppel, Reine Koppel, Žilvinas Liatukas, Jan T. Svensson, Aakash Chawade
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2019.00030

Comparison of F-tests for Univariate and Multivariate Mixed-Effect Models in Genome-Wide Association Mapping
Cited by: 4
Author(s): Akio Onogi
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2019.00677

Epistasis Detection and Modeling for Genomic Selection in Cowpea (Vigna unguiculata L. Walp.)
Cited by: 17
Author(s): Marcus O. Olatoye, Zhenbin Hu, Peter O. Aikpokpodion
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2018.00282

The State of “Omics” Research for Farmed Penaeids: Advances in Research and Impediments to Industry Utilization
Cited by: 22
Author(s): Jarrod L. Guppy, David B. Jones, Dean R. Jerry, Nicholas M. Wade, Herman W. Raadsma, Roger Huerlimann, Kyall R. Zenger
Software Mentions: 1
Published: over 6 years ago

10.1093/dnares/dsaa012

Genome-wide study on the polysomic genetic factors conferring plasticity of flower sexuality in hexaploid persimmon
Cited by: 8
Author(s): Kanae Masuda, Eiji Yamamoto, Kenta Shirasawa, Noriyuki Onoue, Atsushi Kono, Koichiro Ushijima, Yasutaka Kubo, Ryutaro Tao, Isabelle Henry, Takashi Akagi
Software Mentions: 1
Published: over 4 years ago

10.1007/s00122-017-3033-y

Efficiency of multi-trait, indirect, and trait-assisted genomic selection for improvement of biomass sorghum
Cited by: 113
Author(s): Samuel B. Fernandes, Kaio O. G. Dias, Daniel Furtado Ferreira, Patrick J. Brown
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12859-016-1127-1

Does encoding matter? A novel view on the quantitative genetic trait prediction problem
Cited by: 12
Author(s): Dan He, Laxmi Parida
Software Mentions: 1
Published: over 8 years ago

10.1007/s00122-018-3086-6

Genome-wide association mapping for resistance to leaf rust, stripe rust and tan spot in wheat reveals potential candidate genes
Cited by: 83
Author(s): Philomin Juliana, Ravi P. Singh, Pawan Kumar Singh, Jesse Poland, G. C. Bergstrom, Julio Huerta Espino, Sridhar Bhavani, José Crossa, Mark E. Sorrells
Software Mentions: 1
Published: over 6 years ago

10.1007/s00018-021-03844-4

Characterization of effects of genetic variants via genome-scale metabolic modelling
Cited by: 9
Author(s): Hao Tong, Anika Küken, Zahra Razaghi-Moghadam, Zoran Nikoloski
Software Mentions: 1
Published: over 3 years ago

10.1038/hdy.2015.113

Genome-wide prediction models that incorporate de novo GWAS are a powerful new tool for tropical rice improvement
Cited by: 231
Author(s): Spindel Je, Hamida Begum, Deniz Akdemir, B. C. Y. Collard, Edilberto D. Redoña, Jean‐Luc Jannink, Susan R. McCouch
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41437-018-0119-5

Efficiency of genomic prediction across two Eucalyptus nitens seed orchards with different selection histories
Cited by: 37
Author(s): Mari Suontama, Jaroslav Klápště, Emily Telfer, Natalie Graham, Toby Stovold, C. B. Low, Russell B. McKinley, Heidi S. Dungey
Software Mentions: 1
Published: over 6 years ago

Projects: cran: rrBLUP

Papers Mentioning rrBLUP 263