Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: rioja

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/rioja

Analysis of Quaternary Science Data
25 versions
Latest release: about 1 year ago
3 dependent packages
1,194 downloads last month

Papers Mentioning rioja 24

10.3389/fmicb.2021.643730
Particle Collection in Imhoff Sedimentation Cones Enriches Both Motile Chemotactic and Particle-Attached Bacteria
Cited by: 8
Author(s): Anneke Heins, Greta Reintjes, Rudolf Amann, Jens Harder
Software Mentions: 10
Published: over 3 years ago
10.1111/1462-2920.14631
Effect of long‐term organic and mineral fertilization strategies on rhizosphere microbiota assemblage and performance of lettuce
Cited by: 41
Author(s): Soumitra Paul Chowdhury, Doreen Babin, Martin Sandmann, Samuel Jacquiod, Loreen Sommermann, Søren J. Sørensen, Andreas Fließbach, Paul Mäder, Joerg Geistlinger, Kornelia Smalla, Michael Rothballer, Rita Grosch
Software Mentions: 9
Published: over 5 years ago
10.1128/AEM.02755-17
Microbial Diversity and Putative Opportunistic Pathogens in Dishwasher Biofilm Communities
Cited by: 45
Author(s): Prem K. Raghupathi, Jerneja Zupančič, Asker Brejnrod, Samuel Jacquiod, Kurt Houf, Mette Burmølle, Nina Gunde‐Cimerman, Søren J. Sørensen
Software Mentions: 8
Published: over 6 years ago
10.1371/journal.pone.0104705
Laurentian Great Lakes Phytoplankton and Their Water Quality Characteristics, Including a Diatom-Based Model for Paleoreconstruction of Phosphorus
Cited by: 37
Author(s): Euan D. Reavie, Adam J. Heathcote, Victoria L. Shaw Chraïbi
Software Mentions: 7
Published: over 10 years ago
10.1002/ece3.3242
Using digital soil maps to infer edaphic affinities of plant species in Amazonia: Problems and prospects
Cited by: 29
Author(s): Gabriel M. Moulatlet, Gabriela Zuquim, Fernando O. G. Figueiredo, Samuli Lehtonen, Thaíse Emilio, Kalle Ruokolainen, Hanna Tuomisto
Software Mentions: 7
Published: about 7 years ago
10.1186/s13015-019-0157-4
Adjacency-constrained hierarchical clustering of a band similarity matrix with application to genomics
Cited by: 17
Author(s): Christophe Ambroise, Alia Dehman, Pierre Neuvial, Guillem Rigaill, Nathalie Vialaneix
Software Mentions: 5
Published: about 5 years ago
10.1126/sciadv.abb6376
Nonlinear landscape and cultural response to sea-level rise
Cited by: 9
Author(s): Robert L. Barnett, Dan Charman, C. H. W. Johns, Sophie L. Ward, Andrew Bevan, Sarah Bradley, Kevin Camidge, Ralph Fyfe, W. Roland Gehrels, Maria J. Gehrels, Jackie Hatton, Nicole S. Khan, P. Marshall, S. Yoshi Maezumi, Stephen Mills, Jacqui Mulville, Manuel Rodríguez Pérez, Helen M. Roberts, James Scourse, Francis Shepherd, Todd O. Stevens
Software Mentions: 5
Published: about 4 years ago
10.1038/s41598-021-91057-x
Ancient DNA, lipid biomarkers and palaeoecological evidence reveals construction and life on early medieval lake settlements
Cited by: 10
Author(s): Antony G. Brown, Maarten van Hardenbroek, Thierry Fonville, Kimberley Davies, Helen M. M. Mackay, Emily Murray, Katie Head, Phil Barratt, Finbar McCormick, Gentile Francesco Ficetola, Ludovic Gielly, A. Henderson, Anne Crone, Graham Cavers, Peter G. Langdon, Nicki J. Whitehouse, Duncan Pirrie, Inger Greve Alsos
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pone.0200709
Highly diverse Bronze Age population dynamics in Central-Southern Europe and their response to regional climatic patterns
Cited by: 17
Author(s): Giacomo Capuzzo, Marco Zanon, Marta Dal Corso, Wiebke Kirleis, Juan Antonio Barceló
Software Mentions: 4
Published: over 6 years ago
10.1371/journal.pone.0188447
Testing the applicability of a benthic foraminiferal-based transfer function for the reconstruction of paleowater depth changes in Rhodes (Greece) during the early Pleistocene
Cited by: 13
Author(s): Yvonne Milker, Manuel F. G. Weinkauf, Jürgen Titschack, André Freiwald, Stefan Krüger, Frans Jorissen, Gerhard Schmiedl
Software Mentions: 4
Published: about 7 years ago
10.1038/s41598-017-16007-y
Warming, shading and a moth outbreak reduce tundra carbon sink strength dramatically by changing plant cover and soil microbial activity
Cited by: 31
Author(s): Mathilde Borg Dahl, Anders Priemé, Asker Brejnrod, Peter Brusvang, Magnus Lund, Josephine Nymand, Magnus Kramshøj, H. Ro‐Poulsen, Merian Skouw Haugwitz
Software Mentions: 4
Published: about 7 years ago
10.3390/genes8100273
The History of Tree and Shrub Taxa on Bol'shoy Lyakhovsky Island (New Siberian Archipelago) since the Last Interglacial Uncovered by Sedimentary Ancient DNA and Pollen Data
Cited by: 35
Author(s): Heike Zimmermann, Elena Raschke, Laura S. Epp, Kathleen R. Stoof‐Leichsenring, Lutz Schirrmeister, Georg Schwamborn, Ulrike Herzschuh
Software Mentions: 4
Published: about 7 years ago
10.1371/journal.pone.0203962
Re-evaluating the occupation history of Koh Ker, Cambodia, during the Angkor period: A palaeo-ecological approach
Cited by: 8
Author(s): Tegan Hall, Dan Penny, Rebecca Hamilton
Software Mentions: 3
Published: about 6 years ago
10.3389/fmicb.2021.655903
Lead Drives Complex Dynamics of a Conjugative Plasmid in a Bacterial Community
Cited by: 3
Author(s): Valentine Cyriaque, Jonas Stenløkke Madsen, Laurence Fiévez, Baptiste Leroy, Lars Hansen, Fabrice Bureau, Søren J. Sørensen, Ruddy Wattiez
Software Mentions: 3
Published: over 3 years ago
10.3389/fpls.2018.00196
Long-Term Vegetation Dynamics in a Megadiverse Hotspot: The Ice-Age Record of a Pre-montane Forest of Central Ecuador
Cited by: 9
Author(s): Encarni Montoya, Hayley Frances Keen, Carmen Luzuriaga, William D. Gosling
Software Mentions: 3
Published: almost 7 years ago
10.1038/s41598-018-35550-w
Temporal and spatial patterns of mitochondrial haplotype and species distributions in Siberian larches inferred from ancient environmental DNA and modeling
Cited by: 23
Author(s): Laura S. Epp, Stefan Kruse, Nadja J. Kath, Kathleen R. Stoof‐Leichsenring, Ralph Tiedemann, Ludmila A Pestryakova, Ulrike Herzschuh
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pone.0207805
The impact of environmental change on Palaeolithic and Mesolithic plant use and the transition to agriculture at Franchthi Cave, Greece
Cited by: 28
Author(s): Eleni Asouti, María Ntinou, Ceren Kabukcu
Software Mentions: 2
Published: about 6 years ago
10.7717/peerj.4767
An examination of the impact of Olson’s extinction on tetrapods from Texas
Cited by: 8
Author(s): Neil Brocklehurst
Software Mentions: 2
Published: over 6 years ago
10.1038/s42003-021-01701-5
Impact of mid Eocene greenhouse warming on America’s southernmost floras
Cited by: 12
Author(s): Damián Andrés Fernández, Luis Palazzesi, M. Sol González Estebenet, Marı́a Cristina Tellerı́a, Viviana Barreda
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-021-98897-7
Constraining the chronology and ecology of Late Acheulean and Middle Palaeolithic occupations at the margins of the monsoon
Cited by: 4
Author(s): James Blinkhorn, Hema Achyuthan, Julie A. Durcan, Patrick Roberts, Jana Ilgner
Software Mentions: 1
Published: about 3 years ago
10.1371/journal.pone.0159937
Drivers of Change in a 7300-Year Holocene Diatom Record from the Hemi-Boreal Region of Ontario, Canada
Cited by: 4
Author(s): Kristen K. Beck, Andrew S. Medeiros, Sarah A. Finkelstein
Software Mentions: 1
Published: over 8 years ago
10.1002/ece3.7112
Long‐term dynamics of a cladoceran community from an early stage of lake formation in Lake Fukami‐ike, Japan
Cited by: 2
Author(s): Yurie Otake, Hajime Ohtsuki, Jotaro Urabe, Shigeko Kimura, Keita Yamada, Takehito Yoshida
Software Mentions: 1
Published: almost 4 years ago
10.7717/peerj.6269
Diatom ecological response to deposition of the 833-850 CE White River Ash (east lobe) ashfall in a small subarctic Canadian lake
Cited by: 5
Author(s): Scott J Hutchinson, Paul B. Hamilton, R. Timothy Patterson, Jennifer M. Galloway, Nawaf A. Nasser, Christopher Spence, Hendrik Falck
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0199872
Late Holocene climatic variability in Subarctic Canada: Insights from a high-resolution lake record from the central Northwest Territories
Cited by: 15
Author(s): Andrew Dalton, R. Timothy Patterson, Helen Roe, Andrew Macumber, Graeme T. Swindles, Jennifer M. Galloway, Jesse C. Vermaire, Carley Crann, Hendrik Falck
Software Mentions: 1
Published: over 6 years ago