cran: reshape2 | Projects | Ecosyste.ms: Papers

10.1186/s41606-021-00065-3

Palmitoylethanolamide for sleep disturbance. A double-blind, randomised, placebo-controlled interventional study
Cited by: 5
Author(s): Amanda Rao, Phillippa Ebelt, Alistair R. Mallard, David Briskey
Software Mentions: 5
Published: about 3 years ago

10.1186/s13104-017-2455-6

Gene expression differences between PAXgene and Tempus blood RNA tubes are highly reproducible between independent samples and biobanks
Cited by: 12
Author(s): Anne Heidi Skogholt, Einar Ryeng, Sten Even Erlandsen, Frank Skorpen, Svanhild Margrethe Arentz Schønberg, Pål Sætrom
Software Mentions: 5
Published: over 7 years ago

10.1186/s13104-018-3221-0

Proteome-wide comparison between the amino acid composition of domains and linkers
Cited by: 19
Author(s): Daniel C. Brune, Miguel A. Andrade‐Navarro, Pablo Mier
Software Mentions: 5
Published: almost 7 years ago

10.1186/s12920-019-0504-9

Systematic characterization of germline variants from the DiscovEHR study endometrial carcinoma population
Cited by: 2
Author(s): Jason E. Miller, Raghu Metpally, Thomas N. Person, Sarathbabu Krishnamurthy, Venkata Ramesh Dasari, Manu Shivakumar, Daniel R. Lavage, Adam Cook, David J. Carey, Marylyn D. Ritchie, Dokyoon Kim, Radhika Gogoi
Software Mentions: 5
Published: over 5 years ago

10.1186/s12859-021-04154-z

Tamock: simulation of habitat-specific benchmark data in metagenomics
Cited by: 0
Author(s): Samuel M. Gerner, Alexandra B. Graf, Thomas Rattei
Software Mentions: 5
Published: over 3 years ago

10.1002/ece3.7098

Complex postbreeding molt strategies in a songbird migrating along the East Asian Flyway, the Pallas’s Grasshopper Warbler <i>Locustella certhiola</i>
Cited by: 5
Author(s): Hans‐Jürgen Eilts, Nele Feuerbach, Philip D. Round, O. V. Bourski, John A Allcock, Paul J. Leader, Batmunkh Davaasuren, Tuvshinjargal Erdenechimeg, Jong‐Gil Park, Wieland Heim
Software Mentions: 5
Published: almost 4 years ago

10.1002/ece3.5580

Matrotrophic viviparity constrains microbiome acquisition during gestation in a live‐bearing cockroach, Diploptera punctata
Cited by: 6
Author(s): Emily C. Jennings, Matthew W. Korthauer, Trinity L. Hamilton, Joshua B. Benoit
Software Mentions: 5
Published: over 5 years ago

10.1002/ece3.2592

Size differences of Arctic marine protists between two climate periods—using the paleoecological record to assess the importance of within‐species trait variation
Cited by: 12
Author(s): Erik Askov Mousing, Sofia Ribeiro, Chelsea Chisholm, Antoon Kuijpers, Matthias Moros, Marianne Ellegaard
Software Mentions: 5
Published: almost 8 years ago

10.3389/fmicb.2019.00479

Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species
Cited by: 72
Author(s): Marko Verce, Luc De Vuyst, Stefan Weckx
Software Mentions: 4
Published: over 5 years ago

10.3389/fnins.2019.00050

Behavioral Paradigms to Probe Individual Mouse Differences in Value-Based Decision Making
Cited by: 9
Author(s): Opeyemi O. Alabi, Michael Fortunato, Marc V. Fuccillo
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12859-019-3201-y

Manhattan++: displaying genome-wide association summary statistics with multiple annotation layers
Cited by: 4
Author(s): Christopher Grace, Martin Farrall, Hugh Watkins, Anuj Goel
Software Mentions: 4
Published: almost 5 years ago

10.12688/wellcomeopenres.16164.2

The effectiveness of social bubbles as part of a Covid-19 lockdown exit strategy, a modelling study
Cited by: 28
Author(s): Trystan Leng, Connor White, Joe Hilton, Adam J. Kucharski, Lorenzo Pellis, Helena B. Stage, Nicholas Davies, Matthew James Keeling, Stefan Flasche
Software Mentions: 4
Published: over 3 years ago

10.3390/ijms21093187

Season Affects Yield and Metabolic Profiles of Rice (Oryza sativa) under High Night Temperature Stress in the Field
Cited by: 18
Author(s): Stephanie Schaarschmidt, Lovely Mae F Lawas, Ulrike Glaubitz, Xia Li, Alexander Erban, Joachim Kopka, S. V. Krishna Jagadish, Dirk K. Hincha, Ellen Zuther
Software Mentions: 4
Published: over 4 years ago

10.3390/v12010107

Virus Metagenomics in Farm Animals: A Systematic Review
Cited by: 42
Author(s): Ka‐li Kwok, David F. Nieuwenhuijse, My V. T. Phan, Marion Koopmans
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-018-20200-y

Cultural effects on computational metrics of spatial and temporal context
Cited by: 3
Author(s): Nicholas D. Wright, Jan Grohn, Chen Song, Geraint Rees, Rebecca Lawson
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-018-28939-0

Agulhas Current properties shape microbial community diversity and potential functionality
Cited by: 10
Author(s): Sandra Phoma, Surendra Vikram, Janet Jansson, Isabelle Ansorge, Don A. Cowan, Yves Van de Peer, Thulani P. Makhalanyane
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-018-32327-z

The allergic response mediated by fire ant venom proteins
Cited by: 13
Author(s): Daniel Zamith-Miranda, Eduardo Gonçalves Paterson Fox, Ana Paula Teixeira Monteiro, Diogo Gama, Luiz E. Poublan, Almair Ferreira de Araújo, Maria Fernanda Carvalho Araujo, Geórgia C. Atella, Ednildo A. Machado, Bruno L. Diaz
Software Mentions: 4
Published: about 6 years ago

10.3390/v11070675

Δccr5 Genotype Is Associated with Mild Form of Nephropathia Epidemica
Cited by: 2
Author(s): Konstantin Kletenkov, Ekaterina Martynova, Yuriy Davidyuk, Emmanuel Kabwe, А Ф Шамсутдинов, Ekaterina Garanina, Venera Shakirova, И. М. Хаертынова, В. А. Анохин, Rachael Tarlinton, Albert A. Rizvanov, Svetlana F. Khaiboullina, Sergey P. Morzunov
Software Mentions: 4
Published: over 5 years ago

10.3390/v11040377

Determining the Replication Kinetics and Cellular Tropism of Influenza D Virus on Primary Well-Differentiated Human Airway Epithelial Cells
Cited by: 32
Author(s): Melle Holwerda, Jenna N. Kelly, Laura Laloli, Isabel Stürmer, Jasmine Portmann, Hanspeter Stalder, Ronald Dijkman
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-45237-5

A sensitive and simple targeted proteomics approach to quantify transcription factor and membrane proteins of the unfolded protein response pathway in glioblastoma cells
Cited by: 23
Author(s): Chi Nguyen, Sebastian Malchow, Stefan Reich, Sascha Steltgens, Konstantin V. Shuvaev, Stefan Loroch, Christin Lorenz, Albert Sickmann, Christiane B. Knobbe-Thomsen, Björn Tews, Jan Medenbach, Robert Ahrends
Software Mentions: 4
Published: over 5 years ago

10.1128/AEM.01003-19

Genomic and Seasonal Variations among Aquatic Phages Infecting the Baltic Sea Gammaproteobacterium <i>Rheinheimera</i> sp. Strain BAL341
Cited by: 20
Author(s): Emelie Nilsson, K. Li, Jimmy Fridlund, Sigitas Šulčius, Carina Bunse, Christofer M. G. Karlsson, Markus V. Lindh, Daniel Lundin, Jarone Pinhassi, Karin Holmfeldt
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-019-50885-8

Improved gene co-expression network quality through expression dataset down-sampling and network aggregation
Cited by: 25
Author(s): Franziska Liesecke, Johan-Owen De Craene, Sébastien Besseau, Vincent Courdavault, Marc Clastre, Valentin Vergès, Nicolas Papon, Nathalie Giglioli-Guivarc’h, Gaëlle Glévarec, Olivier Pichon, Thomas Dugé de Bernonville
Software Mentions: 4
Published: about 5 years ago

10.1093/jxb/eru250

Soil coring at multiple field environments can directly quantify variation in deep root traits to select wheat genotypes for breeding
Cited by: 119
Author(s): Anton Wasson, G. J. Rebetzke, John A. Kirkegaard, Jack Christopher, R. A. Richards, Michelle Watt
Software Mentions: 4
Published: over 10 years ago

10.1186/s40168-020-00835-8

Metabarcoding reveals distinct microbiotypes in the giant clam Tridacna maxima
Cited by: 21
Author(s): Isis Guibert, Gaël Lecellier, Gergely Torda, Xavier Pochon, Véronique Berteaux‐Lecellier
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2018.00899

A Mosaic of Geothermal and Marine Features Shapes Microbial Community Structure on Deception Island Volcano, Antarctica
Cited by: 28
Author(s): Amanda Gonçalves Bendia, Camila Negrão Signori, Diego Castillo Franco, Rubens Tadeu Delgado Duarte, Brendan J. M. Bohannan, Vivian H. Pellizari
Software Mentions: 4
Published: over 6 years ago

10.1186/s12859-018-2591-6

Real world scenarios in rare variant association analysis: the impact of imbalance and sample size on the power in silico
Cited by: 18
Author(s): Mengjie Zhang, Anna O. Basile, Sarah A. Pendergrass, Marylyn D. Ritchie
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12984-021-00820-8

Brain–computer interface robotics for hand rehabilitation after stroke: a systematic review
Cited by: 76
Author(s): Paul Dominick E. Baniqued, Emily C. Stanyer, Muhammad Awais, Ali Alazmani, Andrew Jackson, Mark Mon-Williams, Faisal Mushtaq, R. Glynn Holt
Software Mentions: 4
Published: almost 4 years ago

10.3390/metabo3020412

CASMI: And the Winner is . . .
Cited by: 30
Author(s): Emma L. Schymanski, Steffen Neumann
Software Mentions: 4
Published: over 11 years ago

10.1128/AEM.00415-18

Shewanella oneidensis MR-1 Utilizes both Sodium- and Proton-Pumping NADH Dehydrogenases during Aerobic Growth
Cited by: 20
Author(s): Kody L. Duhl, Nicholas M. Tefft, Michaela A. TerAvest
Software Mentions: 4
Published: over 6 years ago

10.1038/s41418-020-00733-4

Control of replication stress and mitosis in colorectal cancer stem cells through the interplay of PARP1, MRE11 and RAD51
Cited by: 18
Author(s): Gwenola Manic, Martina Musella, Francesca Corradi, Antonella Sistigu, Sara Vitale, Sara Soliman Abdel Rehim, Luca Mattiello, Eva Malacaria, Claudia Galassi, Michele Signore, Matteo Pallocca, Stefano Scalera, Frauke Goeman, Francesca De Nicola, Andrea Guarracino, Rosa Pennisi, Fabrizio Antonangeli, Francesca Sperati, Marta Baiocchi, Mauro Biffoni, Maurizio Fanciulli, Marcello Maugeri‐Saccà, Annapaola Franchitto, Pietro Pichierri, Ruggero De Maria, Ilio Vitale
Software Mentions: 4
Published: almost 4 years ago

10.15252/embj.201899559

Phosphoproteomic screening identifies physiological substrates of the <scp>CDKL</scp> 5 kinase
Cited by: 52
Author(s): Iván Muñoz, Michael Morgan, Julien Peltier, Florian Weiland, Mateusz Gregorczyk, Fiona Brown, Thomas Macartney, Rachel Toth, Matthias Trost, John Rouse
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2020.554105

Diverse Bacterial Communities From Qaidam Basin of the Qinghai–Tibet Plateau: Insights Into Variations in Bacterial Diversity Across Different Regions
Cited by: 6
Author(s): Wei Zhang, Ali Bahadur, Gaosen Zhang, Binglin Zhang, Xiukun Wu, Tuo Chen, Guangxiu Lu
Software Mentions: 4
Published: about 4 years ago

10.3389/fmicb.2017.02379

Responses of Microbial Community Composition to Temperature Gradient and Carbon Steel Corrosion in Production Water of Petroleum Reservoir
Cited by: 35
Author(s): Xiaoxiao Li, Tao Yang, Serge Maurice Mbadinga, Jinfeng Liu, Shi‐Zhong Yang, Ji‐Dong Gu, Bo‐Zhong Mu
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-021-98423-9

Non-invasive diagnostic tool for Parkinson’s disease by sebum RNA profile with machine learning
Cited by: 11
Author(s): Yuya Uehara, Shinichi Ueno, Haruka Amano-Takeshige, Shuji Suzuki, Yoko Imamichi, Mitsuhisa Fujimaki, Noriyasu Ota, Takatoshi Murase, Tsukasa Inoue, Sachio Saiki, Nobutaka Hattori
Software Mentions: 4
Published: about 3 years ago

10.1093/database/baaa110

Applying graph database technology for analyzing perturbed co-expression networks in cancer
Cited by: 1
Author(s): Claire M. Simpson, Florian Gnad
Software Mentions: 4
Published: almost 5 years ago

10.1186/s13048-021-00830-z

CACNA1C is a prognostic predictor for patients with ovarian cancer
Cited by: 14
Author(s): Xiaohan Chang, Yuanhua Dong
Software Mentions: 4
Published: over 3 years ago

10.1186/s12940-020-00608-8

Persistent organic pollutants, pre-pregnancy use of combined oral contraceptives, age, and time-to-pregnancy in the SELMA cohort
Cited by: 13
Author(s): Richelle D. Björvang, Chris Gennings, Ping Lin, Ghada Hussein, Hannu Kiviranta, Panu Rantakokko, Päivi Ruokojärvi, Christian Lindh, Pauliina Damdimopoulou, Carl‐Gustaf Bornehag
Software Mentions: 4
Published: over 4 years ago

10.3390/foods10081826

Bacterial Community of Grana Padano PDO Cheese and Generical Hard Cheeses: DNA Metabarcoding and DNA Metafingerprinting Analysis to Assess Similarities and Differences
Cited by: 6
Author(s): Miriam Zago, Lia Rossetti, Tommaso Bardelli, Domenico Carminati, Nelson Espinoza N., Giorgio Giraffa
Software Mentions: 4
Published: over 3 years ago

10.1186/s12918-018-0596-4

Single molecules can operate as primitive biological sensors, switches and oscillators
Cited by: 10
Author(s): Rosa D. Hernansaiz-Ballesteros, Luca Cardelli, Attila Csikász‐Nagy
Software Mentions: 4
Published: over 6 years ago

10.1016/j.celrep.2020.02.021

Interplay of Staphylococcal and Host Proteases Promotes Skin Barrier Disruption in Netherton Syndrome
Cited by: 49
Author(s): Michael R. Williams, Laura Cau, Yichen Wang, Drishti Kaul, James A. Sanford, Livia S. Zaramela, Shadi Khalil, A. Butcher, Karsten Zengler, Alexander R. Horswill, Christopher L. Dupont, Alain Hovnanian, Richard L. Gallo
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2015.00573

Revealing the unexplored fungal communities in deep groundwater of crystalline bedrock fracture zones in Olkiluoto, Finland
Cited by: 63
Author(s): Elina Sohlberg, Malin Bomberg, Hanna Miettinen, Mari Nyyssönen, Heikki Salavirta, Minna Vikman, Merja Itävaara
Software Mentions: 4
Published: over 9 years ago

10.1128/mSystems.01048-20

Essential Amino Acid Enrichment and Positive Selection Highlight Endosymbiont's Role in a Global Virus-Vectoring Pest
Cited by: 3
Author(s): Kaitlyn N. Myers, Daniel Conn, Amanda M. V. Brown
Software Mentions: 4
Published: over 3 years ago

10.1186/s12879-020-05600-8

Describing nearly two decades of Chagas disease in Germany and the lessons learned: a retrospective study on screening, detection, diagnosis, and treatment of Trypanosoma cruzi infection from 2000 – 2018
Cited by: 10
Author(s): Jessica Michelle Guggenbühl Noller, Günter Fröschl, Philip Eisermann, Johannes Jochum, Stefanie Theuring, Ingrid Reiter‐Owona, Alfred Lennart Bissinger, Michael Höelscher, Abhishek Bakuli, Franz-Josef Falkner von Sonnenburg, Camilla Rothe, Gisela Bretzel, Pedro Albajar-Viñas, Lise Grout, Michael Pritsch
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12864-021-07503-7

The molecular signatures of compatible and incompatible pollination in Arabidopsis
Cited by: 9
Author(s): Chie Kodera, Jérémy Just, Martine Da Rocha, Antoine Larrieu, Lucie Riglet, Jonathan Legrand, Frédérique Rozier, Thierry Gaude, Isabelle Fobis-Loisy
Software Mentions: 4
Published: over 3 years ago

10.3390/ijerph16244883

Characteristics of Bacterial Community and Function in Paddy Soil Profile around Antimony Mine and Its Response to Antimony and Arsenic Contamination
Cited by: 17
Author(s): Bocong Huang, Jian Long, Hongkai Liao, Lingfei Liu, Juan Li, Jumei Zhang, Yirong Li, Wang Xian, Rui Yang
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0184677

Simple yet effective: Historical proximity variables improve the species distribution models for invasive giant hogweed (Heracleum mantegazzianum s.l.) in Poland
Cited by: 7
Author(s): Piotr Mędrzycki, Ingeborga Jarzyna, Artur Obidziński, B. Tokarska-Guzik, Zofia Sotek, Piotr Pabjanek, Adam Pytlarczyk, Izabela Sachajdakiewicz
Software Mentions: 4
Published: about 7 years ago

10.1186/s12864-020-6483-6

Virus expression detection reveals RNA-sequencing contamination in TCGA
Cited by: 21
Author(s): Sara R. Selitsky, David Marron, Daniel P. Hollern, Lisle E. Mose, Katherine A. Hoadley, Corbin D. Jones, Joel S. Parker, Dirk P. Dittmer, Charles M. Perou
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12986-018-0309-4

Bariatric surgery reduces CD36-bearing microvesicles of endothelial and monocyte origin
Cited by: 9
Author(s): Jaco Botha, Mads Nielsen, Maja Høegh Christensen, Henrik Vestergaard, Aase Handberg
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0206531

The music that helps people sleep and the reasons they believe it works: A mixed methods analysis of online survey reports
Cited by: 42
Author(s): Tabitha Trahan, Simon J. Durrant, Daniel Müllensiefen, Victoria J. Williamson
Software Mentions: 4
Published: about 6 years ago

10.7554/eLife.66186

Host-associated microbe PCR (hamPCR) enables convenient measurement of both microbial load and community composition
Cited by: 19
Author(s): Derek S. Lundberg, Pratchaya Pramoj Na Ayutthaya, Annett Strauß, Gautam Shirsekar, Wen‐Sui Lo, Thomas Lahaye, Detlef Weigel
Software Mentions: 4
Published: over 3 years ago

10.3390/plants10081596

Screening for Higher Grain Yield and Biomass among Sixty Bread Wheat Genotypes Grown under Elevated CO2 and High-Temperature Conditions
Cited by: 11
Author(s): Emilio L. Marcos-Barbero, Pilar Pérez Pérez, Rafael Martínez‐Carrasco, Juan B. Arellano, Rosa Morcuende
Software Mentions: 4
Published: over 3 years ago

10.7554/eLife.47612

Evolutionary pathways to antibiotic resistance are dependent upon environmental structure and bacterial lifestyle
Cited by: 107
Author(s): Alfonso Santos-López, C. W. Marshall, Michelle R. Scribner, Donald R. Snyder, Vaughn S. Cooper
Software Mentions: 4
Published: about 5 years ago

10.3389/fpls.2017.01465

Changes in Species Diversity Patterns and Spatial Heterogeneity during the Secondary Succession of Grassland Vegetation on the Loess Plateau, China
Cited by: 28
Author(s): Caili Sun, Zongzheng Chai, Guobin Liu, Sha Xue
Software Mentions: 4
Published: about 7 years ago

10.3389/fpls.2020.00912

More Filtering on SNP Calling Does Not Remove Evidence of Inter-Nucleus Recombination in Dikaryotic Arbuscular Mycorrhizal Fungi
Cited by: 6
Author(s): Eric C. Chen, Stephanie Mathieu, Anne Hoffrichter, Jeanne Ropars, Steven Dreißig, Joerg Fuchs, Andreas Brachmann, Nicolas Corradi
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0182585

Long-term taxonomic and functional divergence from donor bacterial strains following fecal microbiota transplantation in immunocompromised patients
Cited by: 55
Author(s): Eli L. Moss, Shannon B. Falconer, Е. И. Ткаченко, Mingjie Wang, Hannah Systrom, Jasmin Mahabamunuge, David A. Relman, Elizabeth Hohmann, Ami S. Bhatt
Software Mentions: 4
Published: over 7 years ago

10.1111/geb.13197

Simulating forest resilience: A review
Cited by: 41
Author(s): Katharina Albrich, Werner Rammer, Monica G. Turner, Zak Ratajczak, Kristin H. Braziunas, Winslow D. Hansen, Rupert Seidl
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0223524

Trends in NBA and Euroleague basketball: Analysis and comparison of statistical data from 2000 to 2017
Cited by: 24
Author(s): Radivoj Mandić, Saša Jakovljević, Frane Erčulj, Erik Štrumbelj
Software Mentions: 4
Published: about 5 years ago

10.1186/s12898-016-0106-8

Palaeoenvironmental drivers of vertebrate community composition in the Belly River Group (Campanian) of Alberta, Canada, with implications for dinosaur biogeography
Cited by: 22
Author(s): Thomas M. Cullen, David C. Evans
Software Mentions: 4
Published: about 8 years ago

10.1007/s00359-013-0795-9

Velarium control and visual steering in box jellyfish
Cited by: 6
Author(s): Ronald Petie, Anders Garm, Dan-Eric Nilsson
Software Mentions: 4
Published: almost 12 years ago

10.3389/fnhum.2015.00530

Longitudinal maturation of auditory cortical function during adolescence
Cited by: 12
Author(s): Ahren B. Fitzroy, Jennifer Krizman, Adam Tierney, Manto Agouridou, Nina Kraus
Software Mentions: 3
Published: about 9 years ago

10.1038/s41598-021-94019-5

Multi-omics integration of methyltransferase-like protein family reveals clinical outcomes and functional signatures in human cancer
Cited by: 26
Author(s): Ion J. Campeanu, Yuanyuan Jiang, Lanxin Liu, Maksymilian Pilecki, Alvina Najor, Era Cobani, Morenci Manning, Xiaohong Mary Zhang, Zeng-Quan Yang
Software Mentions: 3
Published: over 3 years ago

10.7717/peerj.6075

Freshwater carbon and nutrient cycles revealed through reconstructed population genomes
Cited by: 53
Author(s): Alexandra M. Linz, Shaomei He, Sarah Stevens, Karthik Anantharaman, Robin R Rohwer, Rex R. Malmstrom, Stefan Bertilsson, Katherine D. McMahon
Software Mentions: 3
Published: almost 6 years ago

10.3390/vaccines8040655

Immune Checkpoint Blockade Enhances Immune Activity of Therapeutic Lung Cancer Vaccine
Cited by: 3
Author(s): Pournima Kadam, Ram Pyare Singh, Michael Davoodi, Jay M. Lee, Maie St. John, Sherven Sharma
Software Mentions: 3
Published: about 4 years ago

10.1038/s41421-018-0032-3

SRSF3 maintains transcriptome integrity in oocytes by regulation of alternative splicing and transposable elements
Cited by: 36
Author(s): Dang Vinh, Bernhard Strauß, Engin Cukuroglu, Iain C. Macaulay, Keng Boon Wee, Xiaoming Hu, Igor Ruiz de los Mozos, Caroline Lee, Andrew Harrison, Richard J. Butler, Sabine Dietmann, Jernej Ule, John C. Marioni, Christopher W. Smith, Jonathan Göke, M. Azim Surani
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-019-45588-z

Enterotype-based Analysis of Gut Microbiota along the Conventional Adenoma-Carcinoma Colorectal Cancer Pathway
Cited by: 38
Author(s): Tzu Wei Yang, Wei Hsiang Lee, Siang Jyun Tu, Wei Huang, Huimei Chen, Ting Sun, Max Tsai, Chi‐Chih Wang, Hsuan‐Yi Chen, Chun‐Chia Huang, Bei Hao Shiu, Hsin Tzu Huang, Yu Pao Chou, Chih Hung Chou, Ya Huang, Yi Sun, Chao Liang, Feng Lin, Shinn-Ying Ho, Wen Liang Chen, Shun Fa Yang, Kwo Chang Ueng, Hsien Da Huang, Cheng‐Yi Huang, Yuh Jyh Jong, Chun Lin
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-017-3499-7

Visualization of consensus genome structure without using a reference genome
Cited by: 3
Author(s): Isao Tada, Yasuhiro Tanizawa, Masanori Arita
Software Mentions: 3
Published: over 7 years ago

10.1038/s41396-018-0213-y

Determining lineage-specific bacterial growth curves with a novel approach based on amplicon reads normalization using internal standard (ARNIS)
Cited by: 18
Author(s): Kasia Piwosz, Tanja Shabarova, Jürgen Tomasch, Karel Šimek, Karel Kopejtka, Silke Kahl, Dietmar H. Pieper, Michal Koblížek
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-019-52607-6

The effect of Pap smear screening on cervical cancer stage among southern Thai women
Cited by: 8
Author(s): Li Niu, Shama Virani, Surichai Bilheem, Hutcha Sriplung
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0113825

Run Charts Revisited: A Simulation Study of Run Chart Rules for Detection of Non-Random Variation in Health Care Processes
Cited by: 61
Author(s): Jacob Anhøj, Anne Vingaard Olesen
Software Mentions: 3
Published: almost 10 years ago

10.1038/s41598-019-57142-y

Targeting redox metabolism: the perfect storm induced by acrylamide poisoning in the brain
Cited by: 13
Author(s): Demetrio Raldúa, Marta Casado, Eva Prats, Melissa Faria, Francesc Puig‐Castellví, Yolanda Pérez, Ignacio Alfonso, Chuan-Yu Hsu, Mark A. Arick, Natàlia García-Reyero, Tamar Ziv, Shani Ben-Lulu, Arie Admon, Benjamı́n Piña
Software Mentions: 3
Published: almost 5 years ago

10.3390/microorganisms8060963

Multiplexed High-Throughput Serological Assay for Human Enteroviruses
Cited by: 5
Author(s): Niila V. V. Saarinen, Jussi Lehtonen, Riitta Veijola, Johanna Lempainen, Mikael Knip, Heikki Hyöty, Olli H. Laitinen, Vesa P. Hytönen
Software Mentions: 3
Published: over 4 years ago

10.7717/peerj.8144

Navigating oxygen deprivation: liver transcriptomic responses of the red eared slider turtle to environmental anoxia
Cited by: 10
Author(s): Kyle K. Biggar, Jing Zhang, Kenneth B. Storey
Software Mentions: 3
Published: almost 5 years ago

10.3389/fmicb.2018.03331

Fecal Microbiota of Toxigenic Clostridioides difficile-Associated Diarrhea
Cited by: 28
Author(s): Marta Hernández, Mónica de Frutos, David Rodrı́guez-Làzaro, Luis López-Urrutia, Narciso M. Quijada, José María Eiros
Software Mentions: 3
Published: almost 6 years ago

10.7150/ijbs.41293

Potential Crosstalk between Liver and Extra-liver Organs in Mouse Models of Acute Liver Injury
Cited by: 12
Author(s): Yufan Zheng, Baiping Cui, Wei Sun, Sining Wang, Xu Huang, Han Gao, Fei Gao, Cheng Qian, Limin Lü, Yanpeng An, Xiaobo Li, Ning Sun
Software Mentions: 3
Published: almost 5 years ago

10.3389/fmicb.2015.00109

Nitrogen addition, not initial phylogenetic diversity, increases litter decomposition by fungal communities
Cited by: 13
Author(s): Anthony S. Amend, Kristin L. Matulich, Jennifer B. H. Martiny
Software Mentions: 3
Published: almost 10 years ago

10.1186/s42523-021-00106-3

Interrogating the bovine reproductive tract metagenomes using culture-independent approaches: a systematic review
Cited by: 17
Author(s): Chian Teng Ong, Conny Turni, G. Boe-Hansen, B. J. Hayes, A.E. Lew-Tabor
Software Mentions: 3
Published: over 3 years ago

10.3390/ijerph14020193

The Importance of Conditioned Stimuli in Cigarette and E-Cigarette Craving Reduction by E-Cigarettes
Cited by: 17
Author(s): Martijn Van Heel, Dinska Van Gucht, Koen Vanbrabant, Frank Baeyens
Software Mentions: 3
Published: almost 8 years ago

10.1002/hbm.25036

Dynamic functional connectivity between nucleus accumbens and the central executive network relates to chronic cannabis use
Cited by: 8
Author(s): Hye Bin Yoo, Blake Edward Moya, Francesca M. Filbey
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2020.01950

Discovery of an Abundance of Biosynthetic Gene Clusters in Shark Bay Microbial Mats
Cited by: 36
Author(s): Ray Chen, Hon Lun Wong, Gareth Kindler, Fraser Iain MacLeod, Nicole Benaud, Belinda C. Ferrari, Brendan P. Burns
Software Mentions: 3
Published: over 4 years ago

10.1155/2021/8533464

Identification of a Nomogram from Ferroptosis-Related Long Noncoding RNAs Signature to Analyze Overall Survival in Patients with Bladder Cancer
Cited by: 22
Author(s): Yuanshan Cui, Yumeng Chai, Xuanyan Che, Yong Zhang
Software Mentions: 3
Published: about 3 years ago

10.1371/journal.pone.0253340

Placental DNA methylation changes and the early prediction of autism in full-term newborns
Cited by: 11
Author(s): Ray O. Bahado‐Singh, Sangeetha Vishweswaraiah, Buket Aydas, Uppala Radhakrishna
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0158449

Selective Predation of a Stalking Predator on Ungulate Prey
Cited by: 19
Author(s): Marco Heurich, Klara Zeis, Helmut Küchenhoff, Jörg Müller, Elisa Belotti, Luděk Bufka, Benno Woelfing
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0104367

The Interplay between Natural Selection and Susceptibility to Melanoma on Allele 374F of SLC45A2 Gene in a South European Population
Cited by: 19
Author(s): Saioa López, Óscar García, Iñaki Yurrebaso, Carlos Flores, Marialbert Acosta‐Herrera, Hua Chen, Jesús Gardeazábal, Jesús María Careaga, María Dolores Boyano, Ana M. Sánchez, Juan Antonio Ratón-Nieto, Arrate Sevilla, Isabel Smith Zubiaga, Alicia García de Galdeano, Conrado Martínez-Cadenas, Neskuts Izagirre, Concepción de la Rúa, Santos Alonso
Software Mentions: 3
Published: over 10 years ago

10.3389/fpls.2018.00869

A Novel and Convenient Method for Early Warning of Algal Cell Density by Chlorophyll Fluorescence Parameters and Its Application in a Highland Lake
Cited by: 21
Author(s): Huan Wang, Rong Zhu, Jia Zhang, Leyi Ni, Hong Shen, Ping Xie
Software Mentions: 3
Published: over 6 years ago

10.7717/peerj.10194

Diversity of the gut microbiome in three grasshopper species using 16S rRNA and determination of cellulose digestibility
Cited by: 11
Author(s): Jianmei Wang, Jing Bai, Fang-Yuan Zheng, Lei Yao, Xiang Li, Jing Wang, Yong-Chao Zhi, Xin-Jiang Li
Software Mentions: 3
Published: about 4 years ago

10.1155/2016/8313272

Correlation-Based Network Generation, Visualization, and Analysis as a Powerful Tool in Biological Studies: A Case Study in Cancer Cell Metabolism
Cited by: 66
Author(s): Albert Batushansky, David Toubiana, Aaron Fait
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0234758

Lipidomic and metabolomic profiles of Coffea canephora L. beans cultivated in Southwestern Nigeria
Cited by: 7
Author(s): Chinyere F. Anagbogu, Jiaqi Zhou, Festus Olakunle Olasupo, Mohammed Baba Nitsa, Diane M. Beckles
Software Mentions: 3
Published: almost 4 years ago

10.3390/antibiotics10050491

New Sequence Type ST3449 in Multidrug-Resistant Pseudomonas aeruginosa Isolates from a Cystic Fibrosis Patient
Cited by: 4
Author(s): Catalina Díaz-Ríos, Marta Hernández, David Abad, Laura Álvarez-Montes, Athanasia Varsaki, David Iturbe-Fernández, Jorge Calvo, Alain A. Ocampo-Sosa
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2018.00183

Genome-Wide Analysis of Interchromosomal Interaction Probabilities Reveals Chained Translocations and Overrepresentation of Translocation Breakpoints in Genes in a Cutaneous T-Cell Lymphoma Cell Line
Cited by: 8
Author(s): Anne Steininger, Grit Ebert, B Becker, Chalid Assaf, Markus Möbs, Christian A. Schmidt, Piotr Grabarczyk, Lars Riff Jensen, Grzegorz K. Przybylski, Matthias Port, Andreas W. Kuß, Reinhard Ullmann
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0152370

Foraging Behavior of Subantarctic Fur Seals Supports Efficiency of a Marine Reserve’s Design
Cited by: 19
Author(s): Stephen P. Kirkman, Dawit Yemane, Tarron Lamont, Michael A. Meÿer, Pierre A. Pistorius
Software Mentions: 3
Published: over 8 years ago

10.1136/bmjopen-2013-004521

Impact of lifetime opioid exposure on arterial stiffness and vascular age: cross-sectional and longitudinal studies in men and women
Cited by: 40
Author(s): Albert Stuart Reece, Gary Kenneth Hulse
Software Mentions: 3
Published: over 10 years ago

10.12688/wellcomeopenres.11246.3

Robust long-read native DNA sequencing using the ONT CsgG Nanopore system
Cited by: 24
Author(s): Jean-Michel Carter, Shobbir Hussain
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-017-06773-0

Linking the morphological and metabolomic response of Lactuca sativa L exposed to emerging contaminants using GC × GC-MS and chemometric tools
Cited by: 50
Author(s): Carlos Hurtado, Hadi Parastar, Víctor Matamoros, Benjamı́n Piña, Romà Tauler, Josep M. Bayona
Software Mentions: 3
Published: over 7 years ago

10.1186/s13601-018-0201-3

Having concomitant asthma phenotypes is common and independently relates to poor lung function in NHANES 2007–2012
Cited by: 25
Author(s): Rita Amaral, João Fonseca, Tiago Jacinto, Ana Margarida Pereira, Andreï Malinovschi, Christer Janson, Kjell Alving
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-017-14487-6

New method for the identification of arbuscular mycorrhizal fungi by proteomic-based biotyping of spores using MALDI-TOF-MS
Cited by: 16
Author(s): Thomas Crossay, Cyril Antheaume, Dirk Redecker, Lucie Bon, Nicolas Chedri, Clément Richert, Linda Guentas, Yvon Cavaloc, Hamid Amir
Software Mentions: 3
Published: about 7 years ago

10.1186/s12903-021-01719-5

Core of the saliva microbiome: an analysis of the MG-RAST data
Cited by: 8
Author(s): Simone Santos Oliveira, Rafaela Rie Nishiyama, Claudio A C Trigo, Ana Luíza Mattos‐Guaraldi, Alberto M. R. Dávila, Rodrigo Desessards Jardim, Flávio Henrique Baggio Aguiar
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-018-27191-w

Vertical and horizontal biogeographic patterns and major factors affecting bacterial communities in the open South China Sea
Cited by: 19
Author(s): Yang Li, Liangdan Sun, Min Sun, Hai-Nan Su, Xiying Zhang, Bin-Bin Xie, Xiu-Lan Chen, Yuzhong Zhang, Qi‐Long Qin
Software Mentions: 3
Published: over 6 years ago

10.1016/j.heliyon.2019.e02316

An investigation into per- and polyfluoroalkyl substances (PFAS) in nineteen Australian wastewater treatment plants (WWTPs)
Cited by: 144
Author(s): Timothy L. Coggan, Damien Moodie, Adam Kolobaric, Drew Szabo, Jeff Shimeta, Nicholas D. Crosbie, Elliot Lee, Milena Fernandes, Bradley O. Clarke
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2020.577851

Integrating Optical Imaging Tools for Rapid and Non-invasive Characterization of Seed Quality: Tomato (Solanum lycopersicum L.) and Carrot (Daucus carota L.) as Study Cases
Cited by: 22
Author(s): Patrícia Aparecida Galletti, Marcia Eugenia Amaral Carvalho, Welinton Yoshio Hirai, Vivian Aparecida Brancaglioni, Valter Arthur, Clíssia Barboza da Silva
Software Mentions: 3
Published: almost 4 years ago

10.14814/phy2.13534

Human hair follicle transcriptome profiling: a minimally invasive tool to assess molecular adaptations upon low‐volume, high‐intensity interval training
Cited by: 7
Author(s): Jing Zhang, Sarah J. Wallace, Maria Y. Shiu, Ingrid Smith, Shawn G. Rhind, Valérie S. Langlois
Software Mentions: 3
Published: almost 7 years ago

Projects: cran: reshape2

Papers Mentioning reshape2 421