Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: randomForestExplainer

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/randomForestExplainer

Explaining and Visualizing Random Forests in Terms of Variable Importance
3 versions
Latest release: over 4 years ago
1 dependent package
1,272 downloads last month

Papers Mentioning randomForestExplainer 20

10.3390/plants10020247

Machine Learning Applications and Optimization of Clustering Methods Improve the Selection of Descriptors in Blackberry Germplasm Banks
Cited by: 5
Author(s): Juan Camilo Henao-Rojas, María Gladis Rosero-Alpala, Carolina Ortiz-Muñoz, Carlos Enrique Velásquez-Arroyo, William A. León-Rueda, Joaquín Guillermo Ramírez‐Gil
Software Mentions: 19
Published: almost 4 years ago

10.1371/journal.pone.0247330

Prediction of femoral osteoporosis using machine-learning analysis with radiomics features and abdomen-pelvic CT: A retrospective single center preliminary study
Cited by: 18
Author(s): Hyun Lim, Hong Il Ha, Sun-Young Park, Junhee Han
Software Mentions: 9
Published: over 3 years ago

10.1038/s41598-020-74691-9

Integration of geoscience frameworks into digital pathology analysis permits quantification of microarchitectural relationships in histological landscapes
Cited by: 4
Author(s): Timothy J. Kendall, Catherine Mary Duff, A. D. Thomson, John P. Iredale
Software Mentions: 9
Published: about 4 years ago

10.1038/s41396-019-0383-2

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots
Cited by: 596
Author(s): Samiran Banerjee, Florian Walder, Lucie Büchi, Marion Meyer, Alain Held, Andreas Gattinger, Thomas Keller, Raphaël Charles, Marcel G. A. van der Heijden
Software Mentions: 8
Published: over 5 years ago

10.1186/s12911-019-0801-4

Predicting factors for survival of breast cancer patients using machine learning techniques
Cited by: 143
Author(s): Mogana Darshini Ganggayah, Nur Aishah Mohd Taib, Yip Cheng Har, Píetro Lió, Sarinder Kaur Dhillon
Software Mentions: 8
Published: over 5 years ago

10.3390/jpm11060496

Exploring the Metabolic Heterogeneity of Cancers: A Benchmark Study of Context-Specific Models
Cited by: 10
Author(s): Mahdi Jalili, Martin Scharm, Olaf Wolkenhauer, Mehdi Damaghi, Ali Salehzadeh‐Yazdi
Software Mentions: 7
Published: over 3 years ago

10.3390/s20041192

Geomorphometric Methods for Burial Mound Recognition and Extraction from High-Resolution LiDAR DEMs
Cited by: 14
Author(s): Mihai Niculiță
Software Mentions: 6
Published: over 4 years ago

10.7554/eLife.62236

Identification of human glucocorticoid response markers using integrated multi-omic analysis from a randomized crossover trial
Cited by: 21
Author(s): Dimitrios Chantzichristos, Peder Svensson, Terence Garner, Camilla A M Glad, Brian R. Walker, Ragnhildur Bergthorsdottir, Oskar Ragnarsson, Penelope Trimpou, Roland H Stimson, Stina Willemoes Borresen, Ulla Feldt‐Rasmussen, Per‐Anders Jansson, Stanko Skrtic, Adam Stevens, Gudmundur Johannsson
Software Mentions: 5
Published: over 3 years ago

10.3390/bs10030062

Random Forest Classification of Alcohol Use Disorder Using EEG Source Functional Connectivity, Neuropsychological Functioning, and Impulsivity Measures
Cited by: 15
Author(s): Chella Kamarajan, Babak A. Ardekani, Ashwini K. Pandey, David B. Chorlian, Sivan Kinreich, Gayathri Pandey, Jacquelyn L. Meyers, Jian Zhang, Weipeng Kuang, Arthur T. Stimus, Bernice Porjesz
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0236631

Citizen science for predicting spatio-temporal patterns in seabird abundance during migration
Cited by: 5
Author(s): Beatriz Martín, Alejandro Onrubia, Julio González-Arias, Juan Antonio Vicente-Virseda
Software Mentions: 5
Published: over 4 years ago

10.1016/j.ebiom.2020.103147

Longitudinal plasma protein profiling of newly diagnosed type 2 diabetes
Cited by: 12
Author(s): Anders Gummesson, Elias Björnson, Linn Fagerberg, Wen Zhong, Abdellah Tebani, Fredrik Edfors, Caroline Schmidt, Annika Lundqvist, Martin Adiels, Fredrik Bäckhed, Jochen M. Schwenk, Per‐Anders Jansson, Mathias Uhlén, Göran Bergström
Software Mentions: 5
Published: almost 4 years ago

10.1002/ece3.6771

A brain and a head for a different habitat: Size variation in four morphs of Arctic charr ( <i>Salvelinus alpinus</i> (L.)) in a deep oligotrophic lake
Cited by: 8
Author(s): Ana-Maria Peris Tamayo, Olivier Devineau, Kim Præbel, Kimmo K. Kahilainen, Kjartan Østbye
Software Mentions: 5
Published: about 4 years ago

10.1002/jev2.12150

Stroma‐derived extracellular vesicle mRNA signatures inform histological nature of prostate cancer
Cited by: 6
Author(s): Alex P. Shephard, Peter Giles, Mariama Mbengue, Amr Alraies, Lisa K. Spary, Howard Kynaston, Mark Gurney, Juan Manuel Falcón‐Pérez, Félix Royo, Zsuzsanna Tabi, Dimitris Parthimos, Rachel J. Errington, Aled Clayton, Jason P. Webber
Software Mentions: 5
Published: about 3 years ago

10.1038/s41598-021-81329-x

Spatiotemporal clustering and Random Forest models to identify risk factors of African swine fever outbreak in Romania in 2018–2019
Cited by: 20
Author(s): Mathieu Andraud, Stéphanie Bougeard, Theodora Chesnoiu, Nicolas Rose
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-021-92112-3

Lipidomics study of plasma from patients suggest that ALS and PLS are part of a continuum of motor neuron disorders
Cited by: 23
Author(s): Estela Area‐Gómez, Delfina Larrea, Tack Su Yun, Yimeng Xu, Jonathan Hupf, Fereshteh Zandkarimi, Robin B. Chan, Hiroshi Mitsumoto
Software Mentions: 3
Published: over 3 years ago

10.1098/rsob.200196

The application of rapid evaporative ionization mass spectrometry in the analysis of <i>Drosophila</i> species—a potential new tool in entomology
Cited by: 5
Author(s): Iris Wagner, Natalie I Koch, Joscelyn Sarsby, Nicola White, Tom A. R. Price, Sam Jones, Jane L. Hurst, Robert J. Beynon
Software Mentions: 3
Published: about 4 years ago

10.3390/brainsci10020115

Random Forest Classification of Alcohol Use Disorder Using fMRI Functional Connectivity, Neuropsychological Functioning, and Impulsivity Measures
Cited by: 24
Author(s): Chella Kamarajan, Babak A. Ardekani, Ashwini K. Pandey, Sivan Kinreich, Gayathri Pandey, David B. Chorlian, Jacquelyn L. Meyers, Jian Zhang, Elaine Bermudez, Arthur T. Stimus, Bernice Porjesz
Software Mentions: 3
Published: almost 5 years ago

10.3390/biom10030421

Machine Learning-Guided Prediction of Antigen-Reactive In Silico Clonotypes Based on Changes in Clonal Abundance through Bio-Panning
Cited by: 6
Author(s): Duck Kyun Yoo, Seung Ryul Lee, Yushin Jung, Haejun Han, Hwa Kyoung Lee, Jerome Han, Soohyun Kim, Jisu Chae, Taehoon Ryu, Junho Chung
Software Mentions: 3
Published: over 4 years ago

10.1186/s12915-019-0686-9

Rapid identification of species, sex and maturity by mass spectrometric analysis of animal faeces
Cited by: 6
Author(s): Nicola B. Davidson, Natalie I Koch, Joscelyn Sarsby, Emrys A. Jones, Jane L. Hurst, Robert J. Beynon
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-56310-4

Comparing DNA methylation profiles across different tissues associated with the diagnosis of pediatric asthma
Cited by: 21
Author(s): Ping‐I Lin, Huan Shu, Tesfaye B. Mersha
Software Mentions: 1
Published: almost 5 years ago