cran: randomForest | Projects | Ecosyste.ms: Papers

10.1186/1471-2105-11-297

A classification model for distinguishing copy number variants from cancer-related alterations
Cited by: 12
Author(s): Irina Ostrovnaya, Gouri J. Nanjangud, Adam B. Olshen
Software Mentions: 3
Published: over 14 years ago

10.3390/nu13061808

Short- and Branched-Chain Fatty Acids as Fecal Markers for Microbiota Activity in Vegans and Omnivores
Cited by: 24
Author(s): Iris Trefflich, Suzanne W. Dietrich, Annett Braune, Klaus Abraham, Cornelia Weikert
Software Mentions: 3
Published: over 3 years ago

10.3390/cancers13092044

Multiregional Sequencing of IDH-WT Glioblastoma Reveals High Genetic Heterogeneity and a Dynamic Evolutionary History
Cited by: 4
Author(s): Sara Franceschi, Prospero Civita, Francesco Pasqualetti, Francesca Lessi, Martina Modena, Serena Barachini, Maria Sole Morelli, Orazio Santonocito, Riccardo Vannozzi, Geoffrey J. Pilkington, Valerio Ortenzi, Antonio Giuseppe Naccarato, Paolo Aretini, Chiara Maria Mazzanti
Software Mentions: 3
Published: over 3 years ago

10.1128/mSystems.00293-19

A Microbiome-Based Index for Assessing Skin Health and Treatment Effects for Atopic Dermatitis in Children
Cited by: 20
Author(s): Zheng Sun, Shi Huang, Pengfei Zhu, Feng Yue, Helen Zhao, Ming Yang, Yinong Niu, Gongchao Jing, Xiaoquan Su, Huiying Li, Chris Callewaert, Rob Knight, Jiquan Liu, Ed Smith, Karl Wei, Jian Xu
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-015-1888-3

Putative synaptic genes defined from a Drosophila whole body developmental transcriptome by a machine learning approach
Cited by: 16
Author(s): Flavio Pazos Obregón, Cecilia Papalardo, Sebastián Castro, Gustavo Guerberoff, Rafael Cantera
Software Mentions: 3
Published: about 9 years ago

10.1038/s41598-020-68074-3

Tumor microenvironment characterization in head and neck cancer identifies prognostic and immunotherapeutically relevant gene signatures
Cited by: 25
Author(s): Mengqi Huo, Ying Zhang, Zhong Chen, Suxin Zhang, Yong-Rui Bao, Tianke Li
Software Mentions: 3
Published: over 4 years ago

10.1186/s12864-016-3290-1

ABO antigen and secretor statuses are not associated with gut microbiota composition in 1,500 twins
Cited by: 58
Author(s): Emily Davenport, Julia K. Goodrich, Jordana T. Bell, Tim D. Spector, Ruth E. Ley, Andrew G. Clark
Software Mentions: 3
Published: about 8 years ago

10.1111/eva.12599

Genomewide association analyses of fitness traits in captive‐reared Chinook salmon: Applications in evaluating conservation strategies
Cited by: 22
Author(s): Charles Waters, Jeffrey J. Hard, Marine S. O. Brieuc, David E. Fast, Kenneth I. Warheit, Curtis M. Knudsen, William J. Bosch, Kerry A. Naish
Software Mentions: 3
Published: over 6 years ago

10.2196/medinform.6690

Patient-Specific Predictive Modeling Using Random Forests: An Observational Study for the Critically Ill
Cited by: 28
Author(s): Joon Lee
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-020-67604-3

The major effects of health-related quality of life on 5-year survival prediction among lung cancer survivors: applications of machine learning
Cited by: 21
Author(s): Jin Ah Sim, Young Ae Kim, Ju Han Kim, Jong Mog Lee, Moon Soo Kim, Young Mog Shim, Jae Ill Zo, Young Ho Yun
Software Mentions: 3
Published: over 4 years ago

10.1128/mSystems.00004-19

Neutral Processes Drive Seasonal Assembly of the Skin Mycobiome
Cited by: 26
Author(s): Xinzhao Tong, Marcus H. Y. Leung, David E. Wilkins, Hedwig H. L. Cheung, Patrick K. H. Lee
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-67024-3

Forest aboveground biomass estimation using Landsat 8 and Sentinel-1A data with machine learning algorithms
Cited by: 124
Author(s): Yingchang Li, Mingyang Li, Chao Li, Zhenzhen Liu
Software Mentions: 3
Published: over 4 years ago

10.12688/f1000research.25501.1

MSclassifier: median-supplement model-based classification tool for automated knowledge discovery
Cited by: 0
Author(s): Emmanuel S. Adabor, George Acquaah‐Mensah, Gaston K. Mazandu
Software Mentions: 3
Published: about 4 years ago

10.1186/s12864-017-4340-z

Discovery of cell-type specific DNA motif grammar in cis-regulatory elements using random Forest
Cited by: 15
Author(s): Xin Wang, Peijie Lin, Joshua W. K. Ho
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-020-66613-6

Determining effects of water and nitrogen input on maize (Zea mays) yield, water- and nitrogen-use efficiency: A global synthesis
Cited by: 11
Author(s): Yuan Li, Song Cui, Zhixin Zhang, Kezhang Zhuang, Zhennan Wang, Qingping Zhang
Software Mentions: 3
Published: over 4 years ago

10.1093/cercor/bhz218

Learning in Visual Regions as Support for the Bias in Future Value-Driven Choice
Cited by: 5
Author(s): Sara Jahfari, Jan Theeuwes, Tomas Knapen
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-020-07003-0

Combined transcriptome and proteome profiling of the pancreatic β-cell response to palmitate unveils key pathways of β-cell lipotoxicity
Cited by: 28
Author(s): Maria Lytrivi, Kassem Ghaddar, Miguel Lopes, Victoria Rosengren, Anthony Piron, Xiaoyan Yi, Henrik J. Johansson, Janne Lehtiö, Mariana Igoillo-Esteve, Daniel Andrade Da Cunha, Lorella Marselli, Piero Marchetti, Henrik Ortsäter, Décio L. Eizirik, Miriam Cnop
Software Mentions: 3
Published: about 4 years ago

10.1002/2211-5463.12694

Alterations in the human gut microbiome associated with <i>Helicobacter pylori</i> infection
Cited by: 29
Author(s): Daoming Wang, Yan Li, Zhong Huang, Qiuxia Ding, Yuxiang Lin, Shanmei Tang, Yang Zong, Qi Wang, Xiuqing Zhang, Huanming Yang, Rong Wang, Xiao Liu
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-63607-2

Regulatory relationship between quality variation and environment of Cistanche deserticola in three ecotypes based on soil microbiome analysis
Cited by: 17
Author(s): Xiao Sun, Li Zhang, Jin Pei, Linfang Huang
Software Mentions: 3
Published: over 4 years ago

10.1093/femsle/fny082

Fermentation products in the cystic fibrosis airways induce aggregation and dormancy-associated expression profiles in a CF clinical isolate of Pseudomonas aeruginosa
Cited by: 18
Author(s): Joann Phan, Tara Gallagher, Andrew Oliver, Whitney England, Katrine Whiteson
Software Mentions: 3
Published: over 6 years ago

10.1186/1752-153X-2-21

Simultaneous feature selection and parameter optimisation using an artificial ant colony: case study of melting point prediction
Cited by: 28
Author(s): Noel M. O’Boyle, David Scott Palmer, Florian Nigsch, John B. O. Mitchell
Software Mentions: 3
Published: about 16 years ago

10.1038/s41598-020-61688-7

Prognostic implications of EGFR protein expression in sporadic colorectal tumors: Correlation with copy number status, mRNA levels and miRNA regulation
Cited by: 15
Author(s): Sofía Del Carmen, Luis A. Corchete, Ruth Gervás, A Barrio Rodriguez, María José García, José A. Sánchez Alcázar, José María Sánchez García, Óscar Bengoechea, Luís Muñoz-Bellvis, José María Sayagués, Mónica Viñarás Abad
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0063308

Biological Networks for Predicting Chemical Hepatocarcinogenicity Using Gene Expression Data from Treated Mice and Relevance across Human and Rat Species
Cited by: 17
Author(s): Reuben Thomas, Russell S. Thomas, Scott S. Auerbach, Christopher J. Portier
Software Mentions: 3
Published: over 11 years ago

10.1007/s00497-020-00398-6

Quantitative methods in microscopy to assess pollen viability in different plant taxa
Cited by: 9
Author(s): Lorenzo Ascari, Cristina Novara, Virginia Dusio, Ludovica Oddi, Consolata Siniscalco
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0211503

Warming seas increase cold-stunning events for Kemp’s ridley sea turtles in the northwest Atlantic
Cited by: 31
Author(s): Lucas P. Griffin, Curtice R. Griffin, John T. Finn, Robert Prescott, Mark Faherty, Brett Still, Andy J. Danylchuk
Software Mentions: 3
Published: almost 6 years ago

10.1186/s13148-017-0430-7

Targeted bisulfite sequencing identified a panel of DNA methylation-based biomarkers for esophageal squamous cell carcinoma (ESCC)
Cited by: 53
Author(s): Weilin Pu, Chenji Wang, Sidi Chen, Dongdong Zhao, Yinghui Zhou, Yanyun Ma, Ying Wang, Caihua Li, Ziyin Huang, Li Jin, Shicheng Guo, Jiucun Wang, Minghua Wang
Software Mentions: 3
Published: almost 7 years ago

10.1186/s13148-014-0035-3

Identification and validation of the methylation biomarkers of non-small cell lung cancer (NSCLC)
Cited by: 59
Author(s): Shicheng Guo, Fengyang Yan, Jibin Xu, Yang Bao, Ji Zhu, Xiao-Tian Wang, Junjie Wu, Yang Li, Weilin Pu, Yan Liu, Zhengwen Jiang, Yanyun Ma, Xiaofeng Chen, Momiao Xiong, Li Jin, Jiucun Wang
Software Mentions: 3
Published: almost 10 years ago

10.1038/s41598-020-60122-2

Amphibian responses in the aftermath of extreme climate events
Cited by: 21
Author(s): Gary M. Bucciarelli, Morgan A Clark, Katy S. Delaney, Seth P. D. Riley, H. Bradley Shaffer, Robert N. Fisher, Rodney L. Honeycutt, Lee B. Kats
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0233229

Laboratory-based and free-living algorithms for energy expenditure estimation in preschool children: A free-living evaluation
Cited by: 11
Author(s): Matthew Ahmadi, Alok Kumar Chowdhury, Toby Pavey, Stewart G. Trost
Software Mentions: 3
Published: over 4 years ago

10.1186/s12879-018-3182-x

Screening swabs surpass traditional risk factors as predictors of MRSA bacteremia
Cited by: 8
Author(s): Guillaume Butler‐Laporte, Matthew P Cheng, Emily G. McDonald, Todd C. Lee
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0141006

Discrimination of Deciduous Tree Species from Time Series of Unmanned Aerial System Imagery
Cited by: 80
Author(s): Jonathan Lisein, Adrien Michez, Hugues Claessens, Philippe Lejeune
Software Mentions: 3
Published: almost 9 years ago

10.1038/s41598-019-53041-4

Fecal microbiome signatures of pancreatic cancer patients
Cited by: 69
Author(s): Elizabeth Half, Nirit Keren, Lea Reshef, Tatiana Dorfman, I. Lachter, Yoram Kluger, Naama Reshef, Hilla Knobler, Yasmin Maor, Assaf Stein, Fred M. Konikoff, Uri Gophna
Software Mentions: 3
Published: about 5 years ago

10.1186/s12859-020-03622-2

Conditional permutation importance revisited
Cited by: 55
Author(s): Dries Debeer, Carolin Strobl
Software Mentions: 3
Published: over 4 years ago

10.7717/peerj-cs.562

Robust proportional overlapping analysis for feature selection in binary classification within functional genomic experiments
Cited by: 9
Author(s): Muhammad Hamraz, Naz Gul, Mushtaq Raza, Dost Muhammad Khan, Umair Khalil, Seema Zubair, Zardad Khan
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-019-52250-1

Removal of deep-sea sponges by bottom trawling in the Flemish Cap area: conservation, ecology and economic assessment
Cited by: 36
Author(s): Christopher K. Pham, F. Javier Murillo, Camille Lirette, Manuel Maldonado, Ana Colaço, Daniela Ottaviani, Ellen Kenchington
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-019-50593-3

Metabolome and microbiome profiling of a stress-sensitive rat model of gut-brain axis dysfunction
Cited by: 18
Author(s): Shalome A. Bassett, Wayne Young, Karl Fraser, Julie E. Dalziel, Jim Webster, Leigh Ryan, Patrick Fitzgerald, Catherine Stanton, Timothy G. Dinan, John F. Cryan, Gerard Clarke, Niall P. Hyland, Nicole C. Roy
Software Mentions: 3
Published: about 5 years ago

10.14309/ctg.0000000000000403

Liquid Biopsy in Gastric Cancer: Analysis of Somatic Cancer Tissue Mutations in Plasma Cell-Free DNA for Predicting Disease State and Patient Survival
Cited by: 6
Author(s): Greta Varkalaitė, Michael Förster, André Franke, Juozas Kupčinskas, Jurgita Skiecevičienė
Software Mentions: 3
Published: about 3 years ago

10.1038/s41598-019-48521-6

Organic contaminants as an ecological tool to explore niche partitioning: a case study using three pelagic shark species
Cited by: 8
Author(s): Kady Lyons, Dovi Kacev, Antonella Preti, David J. Gillett, Heidi Dewar
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0149475

Diagnosis of Coronary Heart Diseases Using Gene Expression Profiling; Stable Coronary Artery Disease, Cardiac Ischemia with and without Myocardial Necrosis
Cited by: 10
Author(s): Nabila Kazmi, Tom R. Gaunt
Software Mentions: 3
Published: over 8 years ago

10.3390/ijerph110909776

Resampling Methods Improve the Predictive Power of Modeling in Class-Imbalanced Datasets
Cited by: 44
Author(s): Paul H. Lee
Software Mentions: 3
Published: about 10 years ago

10.3390/ijerph15102113

Spatiotemporal Variability of Soil Nitrogen in Relation to Environmental Factors in a Low Hilly Region of Southeastern China
Cited by: 6
Author(s): Shilin He, Hailun Zhu, Amir Reza Shahtahmassebi, Lefeng Qiu, Chen Wu, Zhangquan Shen, Ke Wang
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-019-47565-y

Artificial intelligence for morphology-based function prediction in neovascular age-related macular degeneration
Cited by: 36
Author(s): Leon von der Emde, Maximilian Pfau, Chantal Dysli, Sarah Thiele, Philipp T. Möller, Moritz Lindner, Matthias Schmid, Monika Fleckenstein, Frank G. Holz, Steffen Schmitz-Valckenberg
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0220096

Modelling vegetation understory cover using LiDAR metrics
Cited by: 21
Author(s): Lisa Venier, Tom Swystun, Marc J. Mazerolle, David P. Kreutzweiser, Kerrie L. Wainio-Keizer, Ken A. McIlwrick, Murray Woods, Xianli Wang
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0208400

Using a coupled dynamic factor – random forest analysis (DFRFA) to reveal drivers of spatiotemporal heterogeneity in the semi-arid regions of southern Africa
Cited by: 4
Author(s): Jane Southworth, Erin Bunting, Likai Zhu, Sadie J. Ryan, Hannah Victoria Herrero, Peter R. Waylen, Rafael Muñoz‐Carpena, Miguel Ángel Campo‐Bescós, D. A. Kaplan
Software Mentions: 3
Published: almost 6 years ago

10.7717/peerj.5365

More of the same: allopatric humpback whale populations share acoustic repertoire
Cited by: 14
Author(s): Michelle E. H. Fournet, Lauren Jacobsen, Christine M. Gabriele, David K. Mellinger, Holger Klinck
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-36587-7

Modelling the current fractional cover of an invasive alien plant and drivers of its invasion in a dryland ecosystem
Cited by: 47
Author(s): Hailu Shiferaw, Urs Schaffner, Woldeamlak Bewket, Tena Alamirew, Gete Zeleke, Demel Teketay, Sandra Eckert
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0208244

Biogeographical zonation of rocky intertidal communities along the coast of Peru (3.5–13.5° S Southeast Pacific)
Cited by: 25
Author(s): Bruno Ibanez‐Erquiaga, Aldo S. Pacheco, Marcelo M. Rivadeneira, Claudia L Tejada
Software Mentions: 3
Published: almost 6 years ago

10.7717/peerj.3219

CRF: detection of CRISPR arrays using random forest
Cited by: 8
Author(s): Kai Wang, Chun Liang
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0015216

Disordered Microbial Communities in the Upper Respiratory Tract of Cigarette Smokers
Cited by: 350
Author(s): Emily S. Charlson, Jun Chen, Rebecca Custers-Allen, Kyle Bittinger, Hongzhe Li, Rohini Sinha, Jennifer Hwang, Frederic D. Bushman, Ronald G. Collman
Software Mentions: 3
Published: almost 14 years ago

10.1371/journal.pone.0218149

RFQAmodel: Random Forest Quality Assessment to identify a predicted protein structure in the correct fold
Cited by: 3
Author(s): Clare E. West, Saulo H. P. de Oliveira, Charlotte Deane
Software Mentions: 3
Published: about 5 years ago

10.3390/ani11041153

A Pilot Study Using Accelerometers to Characterise the Licking Behaviour of Penned Cattle at a Mineral Block Supplement
Cited by: 7
Author(s): Gamaliel Simanungkalit, Jamie Barwick, Frances Cowley, Robin Dobos, Roger Hegarty
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0026798

Host Centrality in Food Web Networks Determines Parasite Diversity
Cited by: 41
Author(s): Tavis K. Anderson, M. V. K. Sukhdeo
Software Mentions: 3
Published: about 13 years ago

10.1128/mSphere.00271-19

Plasticity in the Human Gut Microbiome Defies Evolutionary Constraints
Cited by: 36
Author(s): Andrés Gómez, Ashok Sharma, Elizabeth K. Mallott, Klára J. Petrželková, Carolyn A. Jost Robinson, Carl J. Yeoman, Franck Carbonero, Barbora Pafčo, Jessica M. Rothman, Alexander Ulanov, Klára Vlčková, Katherine R. Amato, Stephanie L. Schnorr, Nathaniel J. Dominy, David Modrý, Angelique Todd, Manolito Torralba, Karen E. Nelson, Michael B. Burns, Ran Blekhman, Melissa J. Remis, Rebecca M. Stumpf, Brenda A. Wilson, H. Rex Gaskins, Paul A. Garber, Bryan A. White, Steven R. Leigh
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0018174

Weight Trimming and Propensity Score Weighting
Cited by: 324
Author(s): Brian K. Lee, Justin Lessler, Elizabeth A. Stuart
Software Mentions: 3
Published: over 13 years ago

10.3389/fgene.2018.00422

Identification of miR-200c and miR141-Mediated lncRNA-mRNA Crosstalks in Muscle-Invasive Bladder Cancer Subtypes
Cited by: 17
Author(s): Guojun Liu, Zihao Chen, И. Г. Данилова, Mikhail A. Bolkov, Irina A. Tuzankina, Guoqing Liu
Software Mentions: 3
Published: about 6 years ago

10.7717/peerj.11716

ERpred: a web server for the prediction of subtype-specific estrogen receptor antagonists
Cited by: 2
Author(s): Nalini Schaduangrat, Aijaz Ahmad Malik, Chanin Nantasenamat
Software Mentions: 3
Published: over 3 years ago

10.7717/peerj.7936

Rethinking the lake trophic state index
Cited by: 15
Author(s): A Farnaz Nojavan, Betty J. Kreakie, Jeffrey W. Hollister, Song S. Qian
Software Mentions: 3
Published: about 5 years ago

10.1186/s13568-018-0726-9

Structure and predictive functional profiling of microbial communities in two biotrickling filters treated with continuous/discontinuous waste gases
Cited by: 7
Author(s): Rongfang Feng, Meiying Xu, Jianjun Li, Shaobin Huang, Gang Zhao, Xiang Tu, Guoping Sun, Jun Guo
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0229509

Comparing spatial regression to random forests for large environmental data sets
Cited by: 31
Author(s): Eric W. Fox, Jay M. Ver Hoef, A.R. Olsen
Software Mentions: 3
Published: over 4 years ago

10.3390/pathogens10060660

Applying Machine Learning to Predict the Exportome of Bovine and Canine Babesia Species That Cause Babesiosis
Cited by: 7
Author(s): Stephen J. Goodswen, Paul J. Kennedy, John Ellis
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0164649

Identification of an Efficient Gene Expression Panel for Glioblastoma Classification
Cited by: 10
Author(s): Thomas J. Crisman, Ivette Zelaya, Dan R. Laks, Yining Zhao, Riki Kawaguchi, Fuying Gao, Harley I. Kornblum, Giovanni Coppola
Software Mentions: 3
Published: about 8 years ago

10.3389/fgene.2021.716132

Predicting Protein Therapeutic Candidates for Bovine Babesiosis Using Secondary Structure Properties and Machine Learning
Cited by: 4
Author(s): Stephen J. Goodswen, Paul J. Kennedy, John Ellis
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0174098

Electricity forecasting on the individual household level enhanced based on activity patterns
Cited by: 74
Author(s): Krzysztof Gajowniczek, Tomasz Ząbkowski
Software Mentions: 3
Published: over 7 years ago

10.3389/fgene.2020.00071

Identification of Multigene Biomarker for Shrimp White Feces Syndrome by Full-Length Transcriptome Sequencing
Cited by: 17
Author(s): Shenzheng Zeng, Rui Zhou, Shicheng Bao, Xuanting Li, Zhao‐Peng Deng, Dongwei Hou, Shaoping Weng, Jianguo He, Zhijian Huang
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0198122

Lawsuit lead time prediction: Comparison of data mining techniques based on categorical response variable
Cited by: 8
Author(s): Lúcia Adriana dos Santos Gruginskie, Guilherme Luís Roehe Vaccaro
Software Mentions: 3
Published: over 6 years ago

10.3390/diagnostics10121013

Vaginal Microbiome-Based Bacterial Signatures for Predicting the Severity of Cervical Intraepithelial Neoplasia
Cited by: 10
Author(s): Yoon Hee Lee, Gi-Ung Kang, Se Young Jeon, Setu Bazie Tagele, Huy Quang Pham, Min-Sueng Kim, Sajjad Ahmad, Da-Ryung Jung, Yeong-Jun Park, Hyung Soo Han, Jae‐Ho Shin, Gun Oh Chong
Software Mentions: 3
Published: almost 4 years ago

10.3389/fgene.2018.00356

Identification of Hyper-Methylated Tumor Suppressor Genes-Based Diagnostic Panel for Esophageal Squamous Cell Carcinoma (ESCC) in a Chinese Han Population
Cited by: 21
Author(s): Chenji Wang, Weilin Pu, Dongdong Zhao, Yinghui Zhou, Ting Lu, Sidi Chen, Zhenglei He, Xulong Feng, Ying Wang, Caihua Li, Shilin Li, Li Jin, Shicheng Guo, Jiucun Wang, Minghua Wang
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0165513

The Structure and Distribution of Benthic Communities on a Shallow Seamount (Cobb Seamount, Northeast Pacific Ocean)
Cited by: 33
Author(s): Cherisse Du Preez, Janelle M. R. Curtis, M. Elizabeth Clarke
Software Mentions: 3
Published: about 8 years ago

10.3389/fgene.2019.00408

Identification of Hub Genes Associated With Progression and Prognosis in Patients With Bladder Cancer
Cited by: 18
Author(s): Xin Yan, Xiaoping Li, Zixin Guo, Tong-Zu Liu, Sheng Li
Software Mentions: 3
Published: over 5 years ago

10.1186/s12984-018-0456-x

Machine learning algorithms for activity recognition in ambulant children and adolescents with cerebral palsy
Cited by: 43
Author(s): Matthew Ahmadi, Margaret E. OʼNeil, Maria Fragala-Pinkham, Nancy Lennon, Stewart G. Trost
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-018-31527-x

Some things never change: multi-decadal stability in humpback whale calling repertoire on Southeast Alaskan foraging grounds
Cited by: 18
Author(s): Michelle E. H. Fournet, Christine M. Gabriele, David C. Culp, Fred Sharpe, David K. Mellinger, Holger Klinck
Software Mentions: 3
Published: about 6 years ago

10.3390/ijerph18063182

Evaluating the Relationships between Riparian Land Cover Characteristics and Biological Integrity of Streams Using Random Forest Algorithms
Cited by: 8
Author(s): Se-Rin Park, Su Yeon Kim, Sang‐Woo Lee
Software Mentions: 3
Published: over 3 years ago

10.3390/diagnostics10050263

The Influence of Methylating Mutations on Acute Myeloid Leukemia: Preliminary Analysis on 56 Patients
Cited by: 3
Author(s): Sergiu Pașca, Cristina Turcas, Ancuța Jurj, Patric Teodorescu, Sabina Iluta, Ionut Hotea, Anca Bojan, Cristina Selicean, Bogdan Fetică, Bobe Petrushev, Vlad Moisoiu, Alina-Andreea Zimța, Valentina Sas, Cătălin Constantinescu, Dumitru Zdrenghea, Delia Dima, Ciprian Tomuleasa
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0186742

Spatial relationships between above-ground biomass and bird species biodiversity in Palawan, Philippines
Cited by: 5
Author(s): Minerva Singh, Daniel A. Friess, Bruno Vilela, Jose Don T. De Alban, A. Monzón, Rizza Veridiano, Roven D. Tumaneng
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-018-29566-5

Novel 3D Structure Based Model for Activity Prediction and Design of Antimicrobial Peptides
Cited by: 34
Author(s): Shicai Liu, Jingxiao Bao, Xingzhen Lao, Heng Zheng
Software Mentions: 3
Published: over 6 years ago

10.1186/s40478-019-0741-3

High-throughput microscopy exposes a pharmacological window in which dual leucine zipper kinase inhibition preserves neuronal network connectivity
Cited by: 12
Author(s): Marlies Verschuuren, Peter Verstraelen, Gerardo Garcıa-Dıaz Barriga, Ines Cilissen, Emma Coninx, Mieke Verslegers, Peter H. Larsen, Rony Nuydens, Winnok H. De Vos
Software Mentions: 3
Published: over 5 years ago

10.1016/j.vaccine.2021.07.076

The fecal microbiome and rotavirus vaccine immunogenicity in rural Zimbabwean infants
Cited by: 16
Author(s): Ruairi C. Robertson, James Church, Thaddeus J. Edens, Kuda Mutasa, Hyun Min Geum, Iman Baharmand, S K Gill, Robert Ntozini, Bernard Chasekwa, Lynnea Carr, Florence D Majo, Beth D. Kirkpatrick, Benjamin Lee, Lawrence H. Moulton, Jean H. Humphrey, Andrew J. Prendergast, Amee R. Manges, Shine Trial Team
Software Mentions: 3
Published: about 3 years ago

10.3390/diagnostics11040692

Gamma-Glutamyl Transferase (GGT) Is the Leading External Quality Assurance Predictor of ISO15189 Compliance for Pathology Laboratories
Cited by: 0
Author(s): Brett A. Lidbury, Gus Koerbin, Alice Richardson, Tony Badrick
Software Mentions: 3
Published: over 3 years ago

10.7150/jca.51141

6 Circulating miRNAs can be used as Non-invasive Biomarkers for the Detection of Cervical Lesions
Cited by: 6
Author(s): Ruoqi Ning, Silu Meng, Lin Wang, Yulin Jia, Fangxu Tang, Haiying Sun, Zhi Zhang, Chong Zhang, Xinran Fan, Bing Xiao, Chunhua Yang, Shuang Li
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0030142

Enhanced Migratory Waterfowl Distribution Modeling by Inclusion of Depth to Water Table Data
Cited by: 20
Author(s): Betty J. Kreakie, Ying Fan, Timothy H. Keitt
Software Mentions: 2
Published: almost 13 years ago

10.1186/s12967-016-1103-6

Prediction of anti-inflammatory proteins/peptides: an insilico approach
Cited by: 77
Author(s): Sudheer Gupta, Ashok Sharma, Vibhuti Shastri, Midhun K. Madhu, Vineet K. Sharma
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0107042

Disaggregating Census Data for Population Mapping Using Random Forests with Remotely-Sensed and Ancillary Data
Cited by: 614
Author(s): Forrest R. Stevens, Andrea A.E. Gaughan, Catherine Linard, Andrew J. Tatem
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0134465

HdhQ111 Mice Exhibit Tissue Specific Metabolite Profiles that Include Striatal Lipid Accumulation
Cited by: 20
Author(s): Jeffrey B. Carroll, Amy Deik, Elisa Fossale, Rory M. Weston, Jolene R. Guide, Jamshid Arjomand, Seung Kwak, Clary B. Clish, Marcy E. MacDonald
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0162500

Impacts of Climate Change on Native Landcover: Seeking Future Climatic Refuges
Cited by: 4
Author(s): Marina Zanin, Ana Luisa Albernaz
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0242878

A deep learning backcasting approach to the electrolyte, metabolite, and acid-base parameters that predict risk in ICU patients
Cited by: 1
Author(s): Albion Dervishi
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0224502

Deep-learning-based risk stratification for mortality of patients with acute myocardial infarction
Cited by: 50
Author(s): Joon Kwon, Ki‐Hyun Jeon, Hyue Mee Kim, Min Jeong Kim, Soo Min Lim, Kyung Hee Kim, Pil Sang Song, Jinsik Park, Rak Kyeong Choi, Byung Hee Oh
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0072283

A Comprehensive Quantitative Assessment of Bird Extinction Risk in Brazil
Cited by: 18
Author(s): Nathalia Ingrid Gomes Machado, Rafael Loyola
Software Mentions: 2
Published: over 11 years ago

10.1101/2021.03.03.21251639

SARS-CoV-2 antibody magnitude and detectability are driven by disease severity, timing, and assay
Cited by: 15
Author(s): Michael J. Peluso, Saki Takahashi, Jill Hakim, John D. Kelly, Leonel Torres, Nikita S. Iyer, Keirstinne Turcios, Owen Janson, Sadie E. Munter, Cassandra Thanh, Charles R. Nixon, Rebecca Hoh, Viva Tai, Emily A. Fehrman, Yanel Hernandez, Matthew A Spinelli, Monica Gandhi, Mary-Ann Palafox, Ana Vallari, Mary A. Rodgers, John Prostko, John Hackett, Lan Trinh, Terri Wrin, Christos J Petroplolous, Charles Y. Chiu, Philip J. Norris, Clara DiGermanio, Mars Stone, Michael P. Busch, Susanna K. Elledge, Xin Zhou, James A. Wells, Albert Shu, Theodore W. Kurtz, John E. Pak, Wesley Wu, Peter D. Burbelo, Jeffrey I. Cohen, Rachel L. Rutishauser, Jeffrey N. Martin, Steven G. Deeks, Timothy J. Henrich, Isabel Rodríguez-Barraquer, Bryan Greenhouse
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0142502

Towards Quantitative Spatial Models of Seabed Sediment Composition
Cited by: 50
Author(s): David Stephens, Markus Diesing
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0044486

Pseudoabsence Generation Strategies for Species Distribution Models
Cited by: 33
Author(s): Brice B. Hanberry, Hong S. He, Brian J. Palik
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0039932

Using Rule-Based Machine Learning for Candidate Disease Gene Prioritization and Sample Classification of Cancer Gene Expression Data
Cited by: 99
Author(s): Enrico Glaab, Jaume Bacardit, Jonathan M. Garibaldi, Natalio Krasnogor
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0213160

Role of pretreatment variables on plasma HIV RNA value at the sixth month of antiretroviral therapy including all first line drugs in HIV naïve patients: A path analysis approach
Cited by: 1
Author(s): Carlo Mengoli, Monica Basso, Samantha Andreis, Renzo Scaggiante, Mario Cruciani, Roberto Ferretto, Sandro Panese, Vinicio Manfrin, Daniela Francisci, Elisabetta Schiaroli, Gaetano Maffongelli, Loredana Sarmati, Massimo Andreoni, Franco Baldelli, Giorgio Palù, Saverio Giuseppe Parisi
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0153797

Lions as Bone Accumulators? Paleontological and Ecological Implications of a Modern Bone Assemblage from Olduvai Gorge
Cited by: 40
Author(s): Mari Carmen Arriaza, Manuel Domı́nguez-Rodrigo, José Yravedra, Enrique Baquedano
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0230319

Description and classification of echolocation clicks of Indian Ocean humpback (Sousa plumbea) and Indo-Pacific bottlenose (Tursiops aduncus) dolphins from Menai Bay, Zanzibar, East Africa
Cited by: 8
Author(s): Liangliang Yang, Matt Sharpe, Andrew J. Temple, Narriman Jiddawi, Xiaomei Xu, Per Berggren
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0066855

Discovery and Validation of a Prostate Cancer Genomic Classifier that Predicts Early Metastasis Following Radical Prostatectomy
Cited by: 510
Author(s): Nicholas Erho, Anamaria Crisan, Ismael A. Vergara, Anirban P. Mitra, Mercedeh Ghadessi, Christine Buerki, Eric J. Bergstralh, Thomas M. Kollmeyer, Stephanie Fink, Zaid Haddad, B. Zimmermann, Thomas Sierocinski, Karla V. Ballman, Timothy J. Triche, Peter C. Black, R. Jeffrey Karnes, George G. Klee, Elai Davicioni, Robert B. Jenkins
Software Mentions: 2
Published: over 11 years ago

10.1186/1471-2105-7-14

Local protein structure prediction using discriminative models
Cited by: 64
Author(s): Oliver Sander, Iris E. Sommer, Thomas Lengauer
Software Mentions: 2
Published: almost 19 years ago

10.1371/journal.pone.0205505

Predicted distribution of the glass sponge Vazella pourtalesi on the Scotian Shelf and its persistence in the face of climatic variability
Cited by: 33
Author(s): Lindsay Beazley, Zeliang Wang, Ellen Kenchington, Igor Yashayaev, Hans Tore Rapp, Joana R. Xavier, F. Javier Murillo, Derek Fenton, Susanna D. Fuller
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0041337

Regime Shifts and Weakened Environmental Gradients in Open Oak and Pine Ecosystems
Cited by: 44
Author(s): Brice B. Hanberry, Dan Dey, Hong S. He
Software Mentions: 2
Published: over 12 years ago

10.3390/cancers11020256

Reverse Engineering Cancer: Inferring Transcriptional Gene Signatures from Copy Number Aberrations with ICAro
Cited by: 1
Author(s): Davide Angeli, Maurizio Fanciulli, Matteo Pallocca
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0161620

Assessing Weather-Yield Relationships in Rice at Local Scale Using Data Mining Approaches
Cited by: 53
Author(s): Sylvain Delerce, Hugo Dorado, Alexandre Grillon, María Camila Rebolledo, Steven D. Prager, Victor Hugo Patiño, Gabriel Garcés Varón, Daniel Jiménez
Software Mentions: 2
Published: about 8 years ago

Projects: cran: randomForest

Papers Mentioning randomForest 1,447