cran: randomForest | Projects | Ecosyste.ms: Papers

10.3389/fpubh.2021.680054

The Optimal Machine Learning-Based Missing Data Imputation for the Cox Proportional Hazard Model
Cited by: 12
Author(s): Chao-Yu Guo, Ying-Chen Yang, Yi‐Hau Chen
Software Mentions: 4
Published: over 3 years ago

10.1002/ece3.4908

Climate and food diversity as drivers of mammal diversity in Inner Mongolia
Cited by: 8
Author(s): Gang Feng, Hui Yan, Xueting Yang
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-021-90690-w

Comprehensive machine learning based study of the chemical space of herbicides
Cited by: 15
Author(s): Davor Oršolić, Vesna Pehar, Tomislav Šmuc, Višnja Stepanić
Software Mentions: 4
Published: over 3 years ago

10.1186/s12864-019-6142-y

DNA methylation profiles capturing breast cancer heterogeneity
Cited by: 19
Author(s): Xiao Chen, Jianying Zhang, Xiaofeng Dai
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0132178

What Is a Mild Winter? Regional Differences in Within-Species Responses to Climate Change
Cited by: 105
Author(s): Sebastian Vetter, T. Ruf, Claudia Bieber, Walter Arnold
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0137171

Discovery of a Novel Immune Gene Signature with Profound Prognostic Value in Colorectal Cancer: A Model of Cooperativity Disorientation Created in the Process from Development to Cancer
Cited by: 22
Author(s): Ning An, Xiaoyu Shi, Yueming Zhang, Ning Lv, Feng Li, Di Xia, Ning Han, Guiqi Wang, Shujun Cheng, Kaitai Zhang
Software Mentions: 4
Published: about 9 years ago

10.1002/ece3.2507

Changing climate mediates sapsucker (Aves: <i>Sphyrapicus</i> ) hybrid zone movement
Cited by: 23
Author(s): Shawn M. Billerman, Melanie A. Murphy, Matthew D. Carling
Software Mentions: 4
Published: about 8 years ago

10.1100/2012/380495

Gene Expression Profiles for Predicting Metastasis in Breast Cancer: A Cross-Study Comparison of Classification Methods
Cited by: 15
Author(s): Mark Burton, Mads Thomassen, Qihua Tan, Torben A. Kruse
Software Mentions: 4
Published: almost 13 years ago

10.3389/fpls.2019.01570

Genetic Correlation, Genome-Wide Association and Genomic Prediction of Portable NIRS Predicted Carotenoids in Cassava Roots
Cited by: 18
Author(s): Ugochukwu N. Ikeogu, Deniz Akdemir, Wolfe, Uche Godfrey Okeke, Chinedozi Amaefula, Jean‐Luc Jannink, Chiedozie Egesi
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-021-86921-9

Systematic prediction of drug resistance caused by transporter genes in cancer cells
Cited by: 4
Author(s): Yao Shen, Zhipeng Yan
Software Mentions: 4
Published: over 3 years ago

10.1002/ece3.6488

Diet of a rare herbivore based on DNA metabarcoding of feces: Selection, seasonality, and survival
Cited by: 21
Author(s): Amanda R. Goldberg, Courtney J. Conway, David C. Tank, Kimberly R. Andrews, Digpal Singh Gour, Lisette P. Waits
Software Mentions: 4
Published: over 4 years ago

10.1186/s12859-020-03933-4

MegaR: an interactive R package for rapid sample classification and phenotype prediction using metagenome profiles and machine learning
Cited by: 7
Author(s): Eliza Dhungel, Yassin Mreyoud, Ho Jin Gwak, Ahmad Rajeh, Mina Rho, Tae-Hyuk Ahn
Software Mentions: 4
Published: almost 4 years ago

10.3389/fpls.2021.639253

A Machine Learning Approach to Prioritizing Functionally Active F-box Members in Arabidopsis thaliana
Cited by: 2
Author(s): Yang Li, Madhura M. Yapa, Zhihua Hua
Software Mentions: 4
Published: over 3 years ago

10.1002/ece3.1823

Modeling and predicting the growth of the mussel, <i>Mytilus edulis</i> : implications for planning of aquaculture and eutrophication mitigation
Cited by: 18
Author(s): Per Bergström, Susanne Lindegarth, Mats Lindegarth
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pone.0252086

Characterization of oral and cloacal microbial communities in cold-stunned Kemp’s ridley sea turtles (Lepidochelys kempii) during the time course of rehabilitation
Cited by: 9
Author(s): Kerry McNally, Charles J. Innis, Adam Kennedy, Jennifer L. Bowen
Software Mentions: 4
Published: over 3 years ago

10.1155/2019/9565794

A Pathway Analysis Based on Genome-Wide DNA Methylation of Chinese Patients with Graves’ Orbitopathy
Cited by: 10
Author(s): Xin Zhong, Lin Hua, Yilin Yang, Tingting Shi, Wei Liu, Xiu Tuo, Li Yu, Xi Cao, Fengying Yang
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-021-81205-8

Ranking of a wide multidomain set of predictor variables of children obesity by machine learning variable importance techniques
Cited by: 14
Author(s): Helena Marcos-Pasero, Gonzalo Colmenarejo, Elena Aguilar-Aguilar, Ana Ramı́rez de Molina, Guillermo Reglero, Viviana Loria-Kohen
Software Mentions: 4
Published: almost 4 years ago

10.3389/fpls.2016.01864

Phenotyping: Using Machine Learning for Improved Pairwise Genotype Classification Based on Root Traits
Cited by: 23
Author(s): Jiangsan Zhao, Gernot Bodner, Boris Rewald
Software Mentions: 4
Published: almost 8 years ago

10.3389/fpls.2020.603921

Prediction of Biomass and N Fixation of Legume–Grass Mixtures Using Sensor Fusion
Cited by: 17
Author(s): Esther Grüner, Thomas Astor, M. Wachendorf
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-020-79055-x

Simultaneous allergic traits in dogs and their owners are associated with living environment, lifestyle and microbial exposures
Cited by: 13
Author(s): Jenni Lehtimäki, Hanna Sinkko, Anna Hielm‐Björkman, Tiina Laatikainen, Lasse Ruokolainen, Hannes Lohi
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-021-87870-z

Selection of nitrogen responsive root architectural traits in spinach using machine learning and genetic correlations
Cited by: 15
Author(s): Henry O. Awika, Amit Kumar Mishra, Haramrit Gill, James DiPiazza, Carlos A. Avila, Vijay Joshi
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-020-75291-3

Assessing the susceptibility of schools to flood events in Iran
Cited by: 14
Author(s): Saleh Yousefi, Hamid Reza Pourghasemi, Sayed Naeim Emami, Omid Rahmati, Shahla Tavangar, Soheila Pouyan, John P. Tiefenbacher, Shahbaz Shamsoddini, Mohammad Nekoeimehr
Software Mentions: 4
Published: about 4 years ago

10.1002/ece3.5464

Cuticular hydrocarbons as potential mediators of cryptic species divergence in a mutualistic ant association
Cited by: 18
Author(s): Juliane Hartke, Philipp P. Sprenger, Jacqueline Sahm, Helena Winterberg, Jérôme Orivel, Hannes Baur, Till Beuerle, Thomas Schmitt, Barbara Feldmeyer, Florian Menzel
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0068322

Reduced Incidence of Prevotella and Other Fermenters in Intestinal Microflora of Autistic Children
Cited by: 660
Author(s): Dae Wook Kang, Jin Gyoon Park, Zehra Esra Ilhan, Garrick Wallstrom, Joshua LaBaer, James B. Adams, Rosa Krajmalnik‐Brown
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0188408

Leaf herbivory imposes fitness costs mediated by hummingbird and insect pollinators
Cited by: 17
Author(s): Alexander Chautá, Susan R. Whitehead, Marisol Amaya–Márquez, Katja Poveda
Software Mentions: 4
Published: almost 7 years ago

10.3389/fpls.2021.636915

Trait Diversity of Pulse Species Predicts Agroecosystem Properties Trade-Offs
Cited by: 0
Author(s): Julie Guiguitant, Denis Vile, Hélène Marrou
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pntd.0008056

Machine learning and dengue forecasting: Comparing random forests and artificial neural networks for predicting dengue burden at national and sub-national scales in Colombia
Cited by: 33
Author(s): Naizhuo Zhao, Katia Charland, Mabel Carabalí, Elaine O. Nsoesie, Mathieu Maheu‐Giroux, Erin E. Rees, Mengru Yuan, César García Balaguera, Gloria Jaramillo Ramirez, Kate Zinszer
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pntd.0009091

Progress towards onchocerciasis elimination in Côte d’Ivoire: A geospatial modelling study
Cited by: 4
Author(s): Obiora A. Eneanya, Benjamin G. Koudou, Aboulaye Meïté, Aba Ange Elvis, Yeo Souleymane, Marie-Madeleine Kouakou, Gary J. Weil, Peter Fischer
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-020-76161-8

Better understanding and prediction of antiviral peptides through primary and secondary structure feature importance
Cited by: 34
Author(s): Abu Sayed Chowdhury, Sarah Reehl, Kylene Kehn-Hall, Barney Bishop, Bobbie‐Jo Webb‐Robertson
Software Mentions: 4
Published: about 4 years ago

10.1093/tas/txaa098

Influence of three times weekly alfalfa supplementation on the behavior of beef cows grazing dormant Montana rangeland1
Cited by: 0
Author(s): Noah Davis, Samuel A Wyffels, Carla D Sanford, Timothy DelCurto
Software Mentions: 4
Published: almost 4 years ago

10.3389/fonc.2020.01638

Establishment of Decision Rules and Risk Assessment Model for Preoperative Prediction of Lymph Node Metastasis in Gastric Cancer
Cited by: 9
Author(s): Chao Huang, Cegui Hu, Jinfeng Zhu, Wenjun Zhang, Jun Huang, Zhengming Zhu
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pgen.1004982

Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and Statistical Model on Accuracy of Rice Genomic Selection in Elite, Tropical Rice Breeding Lines
Cited by: 378
Author(s): Jennifer Spindel, Hamida Begum, Deniz Akdemir, P. S. Virk, B. C. Y. Collard, Edilberto D. Redoña, G. N. Atlin, Jean‐Luc Jannink, Susan R. McCouch
Software Mentions: 4
Published: almost 10 years ago

10.3390/bioengineering5020047

Deep Artificial Neural Networks for the Diagnostic of Caries Using Socioeconomic and Nutritional Features as Determinants: Data from NHANES 2013–2014
Cited by: 26
Author(s): Laura A. Zanella-Calzada, Carlos E. Galván-Tejada, Nubia M. Chávez-Lamas, Jesús Rivas-Gutierrez, Rafael Magallanes‐Quintanar, José M. Celaya-Padilla, Jorge I. Galván-Tejada, Hamurabi Gamboa-Rosales
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-69157-x

Improving prediction of rare species’ distribution from community data
Cited by: 13
Author(s): Chongliang Zhang, Yong Chen, Binduo Xu, Ying Xue, Yiping Ren
Software Mentions: 4
Published: over 4 years ago

10.3389/fonc.2020.604266

Prediction of Pathological Upgrading at Radical Prostatectomy in Prostate Cancer Eligible for Active Surveillance: A Texture Features and Machine Learning-Based Analysis of Apparent Diffusion Coefficient Maps
Cited by: 10
Author(s): Jinke Xie, Basen Li, Xiangde Min, Peipei Zhang, Chanyuan Fan, Qiubai Li, Liang Wang
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pcbi.0020157

Selection of Target Sites for Mobile DNA Integration in the Human Genome
Cited by: 195
Author(s): Charles C. Berry, Sridhar Hannenhalli, Jeremy Leipzig, Frederic D. Bushman
Software Mentions: 4
Published: almost 19 years ago

10.1371/journal.pcbi.0030058

Structural Descriptors of gp120 V3 Loop for the Prediction of HIV-1 Coreceptor Usage
Cited by: 84
Author(s): Oliver Sander, Tobias Sing, Iris E. Sommer, Andrew Low, Peter K. Cheung, P. Richard Harrigan, Thomas Lengauer, Francisco S. Domingues
Software Mentions: 4
Published: over 17 years ago

10.1186/s13040-014-0028-y

Synthetic learning machines
Cited by: 22
Author(s): Hemant Ishwaran, James D. Malley
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pcbi.1007467

Evolution of the nonsense-mediated decay pathway is associated with decreased cytolytic immune infiltration
Cited by: 14
Author(s): Boyang Zhao, Justin R. Pritchard
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pcbi.1008837

Pandemic velocity: Forecasting COVID-19 in the US with a machine learning & Bayesian time series compartmental model
Cited by: 36
Author(s): Gregory L. Watson, Dayuan Xiong, Lu Zhang, Joseph A. Zoller, John Shamshoian, Phillip Sundin, Teresa Bufford, Anne W. Rimoin, Marc A. Suchard, Christina M. Ramirez
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.1009144

PEDF, a pleiotropic WTC-LI biomarker: Machine learning biomarker identification and validation
Cited by: 5
Author(s): George Crowley, James Kim, Sophia Kwon, Rachel Lam, David J. Prezant, Mengling Liu, Anna Nolan
Software Mentions: 4
Published: over 3 years ago

10.1186/1471-2105-13-S13-S11

The Genboree Microbiome Toolset and the analysis of 16S rRNA microbial sequences
Cited by: 37
Author(s): Kevin Riehle, Cristian Coarfa, Andrew Jackson, Jun Ma, Arpit Tandon, Sameer Paithankar, Sriram Raghuraman, Toni Ann Mistretta, Delphine M. Saulnier, Sabeen Raza, M.A. Valdovinos Díaz, Robert J. Shulman, Kjersti M. Aagaard, James Versalovic, Aleksandar Milosavljevic
Software Mentions: 4
Published: over 12 years ago

10.1038/s41424-018-0059-7

First Degree Relatives of Patients with Celiac Disease Harbour an Intestinal Transcriptomic Signature that Might Protect them from Enterocyte Damage
Cited by: 5
Author(s): Pragyan Acharya, Rintu Kutum, Rajesh Pandey, Abhishek Mishra, Ratan K. Saha, Akshay Munjal, Vineet Ahuja, Mitali Mukerji, Govind Makharia
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pbio.3000633

Mapping trends in insecticide resistance phenotypes in African malaria vectors
Cited by: 80
Author(s): Penelope A. Hancock, Chantal Hendriks, Julie Anne A. Tangena, Harry S. Gibson, Janet Hemingway, Michael Coleman, Peter W. Gething, Ewan Cameron, Samir Bhatt, Catherine L. Moyes
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pbio.2003862

Compositional shifts in root-associated bacterial and archaeal microbiota track the plant life cycle in field-grown rice
Cited by: 290
Author(s): Joseph Edwards, Christian Santos‐Medellín, Zachary Liechty, Bao‐Anh Thi Nguyen, Eugene Lurie, Shane Eason, Gregory C. Phillips, Venkatesan Sundaresan
Software Mentions: 4
Published: over 6 years ago

10.3389/fonc.2020.558162

Radiomic Features From Multi-Parameter MRI Combined With Clinical Parameters Predict Molecular Subgroups in Patients With Medulloblastoma
Cited by: 32
Author(s): Jing Yan, Lei Liu, Weiwei Wang, Yuanshen Zhao, Kay Ka‐Wai Li, Ké Li, Li Wang, Binke Yuan, Haiyang Geng, Shenghai Zhang, Zhen Liu, Wenchao Duan, Yunbo Zhan, Dongling Pei, Haibiao Zhao, Tongwen Sun, Chen Sun, Wenqing Wang, Xuanke Hong, Xiangxiang Wang, Yu Guo, Wencai Li, Jingliang Cheng, Xianzhi Liu, Ho‐Keung Ng, Zhicheng Li, Zhenyu Zhang
Software Mentions: 4
Published: about 4 years ago

10.1007/s11104-017-3418-3

Landscape-scale assessments of stable carbon isotopes in soil under diverse vegetation classes in East Africa: application of near-infrared spectroscopy
Cited by: 11
Author(s): Leigh A. Winowiecki, Tor-Gunnar Vågen, Pascal Boeckx, Jennifer A. J. Dungait
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-019-56485-w

Statistical Analysis of Dual-task Gait Characteristics for Cognitive Score Estimation
Cited by: 14
Author(s): Taku Matsuura, Kazuhiro Sakashita, Andrey Grushnikov, Fumio Okura, Ikuhisa Mitsugami, Yasushi Yagi
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12894-021-00849-w

Development and head-to-head comparison of machine-learning models to identify patients requiring prostate biopsy
Cited by: 4
Author(s): Shuanbao Yu, Tao Jin, Biao Dong, Yafeng Fan, Haopeng Du, Haotian Deng, Jinshan Cui, Guodong Hong, Xuepei Zhang
Software Mentions: 4
Published: over 3 years ago

10.1186/s13568-020-01119-y

Dissimilarity of microbial diversity of pond water, shrimp intestine and sediment in Aquamimicry system
Cited by: 23
Author(s): Shenzheng Zeng, Sukontorn Khoruamkid, Warinphorn Kongpakdee, Dongdong Wei, Lingfei Yu, Hao Wang, Zhao‐Peng Deng, Shaoping Weng, Zhijian Huang, Jianguo He, Kriengkrai Satapornvanit
Software Mentions: 4
Published: about 4 years ago

10.1186/1752-0509-7-70

Identification of yeast cell cycle regulated genes based on genomic features
Cited by: 8
Author(s): Chao Cheng, Yao Fu, Linsheng Shen, Mark Gerstein
Software Mentions: 4
Published: almost 12 years ago

10.1186/1752-0509-4-159

Deducing corticotropin-releasing hormone receptor type 1 signaling networks from gene expression data by usage of genetic algorithms and graphical Gaussian models
Cited by: 6
Author(s): Dietrich Trümbach, Cornelia Graf, Benno Pütz, Claudia Kühne, Marcus Panhuysen, Peter Weber, Florian Holsboer, Wolfgang Wurst, Gerhard Welzl, Jan M. Deussing
Software Mentions: 4
Published: about 14 years ago

10.7717/peerj.9087

Estimation of soil salt content by combining UAV-borne multispectral sensor and machine learning algorithms
Cited by: 19
Author(s): Guangfei Wei, Yu Liu, Zhitao Zhang, Yinwen Chen, Junying Chen, Zhihua Yao, Congcong Lao, Huifang Chen
Software Mentions: 4
Published: over 4 years ago

10.7717/peerj.4512

Playing by the rules? Phenotypic adaptation to temperate environments in an American marsupial
Cited by: 16
Author(s): Sergio Nigenda‐Morales, Ryan J. Harrigan, Robert K. Wayne
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-44547-y

Disrupted Maturation of the Microbiota and Metabolome among Extremely Preterm Infants with Postnatal Growth Failure
Cited by: 57
Author(s): Noelle Younge, Christopher B. Newgard, C. Michael Cotten, Ronald N. Goldberg, Michael J. Muehlbauer, James R. Bain, Robert Stevens, Thomas M. O’Connell, John F. Rawls, Patrick C. Seed, Patricia L. Ashley
Software Mentions: 4
Published: over 5 years ago

10.1186/s12014-021-09318-w

Circulating proteins associated with allergy development in infants—an exploratory analysis
Cited by: 5
Author(s): Marit Stockfelt, Mun‐Gwan Hong, Bill Hesselmar, Ingegerd Adlerberth, Agnes E. Wold, Jochen M. Schwenk, Anna‐Carin Lundell, Anna Rudin
Software Mentions: 4
Published: over 3 years ago

10.1186/s13059-020-02007-1

Influenza infection elicits an expansion of gut population of endogenous Bifidobacterium animalis which protects mice against infection
Cited by: 62
Author(s): Qiang Zhang, Jin Hu, Jia-Wu Feng, Xiaoru Hu, Wang Ting, Wenxiao Gong, Kun Huang, Yi-Xiong Guo, Zhong Zou, Xian Lin, Run Zhou, Yuqi Yuan, Anding Zhang, Hong Wei, Gang Cao, Chen Liu, Lingling Chen, Meilin Jin
Software Mentions: 4
Published: over 4 years ago

10.7717/peerj.5829

Ecological divergence of burying beetles into the forest canopy
Cited by: 7
Author(s): Jillian D. Wettlaufer, Kevin Burke, Adam Schizkoske, David Beresford, Paul R. Martin
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-019-39773-3

Environmental structure drives resistance to phages and antibiotics during phage therapy and to invading lysogens during colonisation
Cited by: 34
Author(s): Jorge Moura de Sousa, Eduardo P. C. Rocha
Software Mentions: 4
Published: over 5 years ago

10.18632/aging.203122

Do eye diseases increase the risk of arthritis in the elderly population?
Cited by: 7
Author(s): Wenyi Jin, Qian Yao, Zilin Liu, Weipeng Cao, Yubiao Zhang, Zhifei Che, Hao Peng
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-019-39450-5

Forecasting the response to global warming in a heat-sensitive species
Cited by: 32
Author(s): Francesca Brivio, Milena Zurmühl, Stefano Grignolio, Jost von Hardenberg, Marco Apollonio, Simone Ciuti
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-61288-5

Forecasting risk gene discovery in autism with machine learning and genome-scale data
Cited by: 21
Author(s): Leo Brueggeman, Tanner Koomar, Jacob J. Michaelson
Software Mentions: 4
Published: over 4 years ago

10.7717/peerj.703

A statistical assessment of population trends for data deficient Mexican amphibians
Cited by: 8
Author(s): Esther Quintero, Anne E. Thessen, Paulina Arias-Caballero, Bárbara Ayala-Orozco
Software Mentions: 4
Published: almost 10 years ago

10.7717/peerj.6190

Forest floor temperature and greenness link significantly to canopy attributes in South Africa’s fragmented coastal forests
Cited by: 10
Author(s): Marion Pfeifer, Michael J. W. Boyle, Stuart Dunning, Pieter I. Olivier
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-018-32966-2

Variable importance for sustaining macrophyte presence via random forests: data imputation and model settings
Cited by: 8
Author(s): Wout Van Echelpoel, Peter Goethals
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2021.609048

kernInt: A Kernel Framework for Integrating Supervised and Unsupervised Analyses in Spatio-Temporal Metagenomic Datasets
Cited by: 8
Author(s): Elies Ramon, Lluís A. Belanche-Muñoz, F. Molist, Raquel Quintanilla, Miguel Pérez‐Enciso, Yuliaxis Ramayo-Caldas
Software Mentions: 4
Published: almost 4 years ago

10.3389/fmicb.2020.00873

Long-Term Stochasticity Combines With Short-Term Variability in Assembly Processes to Underlie Rice Paddy Sustainability
Cited by: 7
Author(s): Wenjing Liu, Emily B. Graham, Linghao Zhong, Jianwei Zhang, Shijie Li, Xiangui Lin, Youzhi Feng
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-018-32930-0

Social and nutritional factors shape larval aggregation, foraging, and body mass in a polyphagous fly
Cited by: 17
Author(s): Juliano Morimoto, Binh Nguyen, Shabnam Tarahi Tabrizi, Fleur Ponton, Phillip W. Taylor
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-018-28550-3

Analysis of the Gut Microbiome of Rural and Urban Healthy Indians Living in Sea Level and High Altitude Areas
Cited by: 92
Author(s): Bhabatosh Das, Tarini Shankar Ghosh, Saurabh Kedia, Ritika Rampal, Shruti Saxena, Satyabrata Bag, Ridhima Mitra, Mayanka Dayal, Ojasvi Mehta, Adarsh Surendranath, Simon Travis, Prabhanshu Tripathi, G. Balakrish Nair, Vineet Ahuja
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-018-27783-6

Dispersal-competition tradeoff in microbiomes in the quest for land colonization
Cited by: 13
Author(s): Francisco Dini‐Andreote, Jan Dirk van Elsas, Han Olff, Joana Falcão Salles
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-018-29992-5

Integrative analysis of the inter-tumoral heterogeneity of triple-negative breast cancer
Cited by: 35
Author(s): Alec Chiu, Mithun Mitra, Lari Boymoushakian, Hilary A. Coller
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2020.00364

Comparison of the Bacterial Gut Microbiome of North American Triatoma spp. With and Without Trypanosoma cruzi
Cited by: 20
Author(s): Allison E. Mann, Elizabeth A. Mitchell, Yan Zhang, Rachel Curtis‐Robles, Santosh Thapa, Sarah A. Hamer, Michael S. Allen
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-018-32361-x

Comparison of initial oral microbiomes of young adults with and without cavitated dentin caries lesions using an in situ biofilm model
Cited by: 12
Author(s): Stefan Rupf, Cédric Christian Laczny, Valentina Galata, Christina Backes, Andreas Keller, Natalia Umanskaya, Arzu Erol, Sascha Tierling, Christina Lo Porto, Jörn Walter, Jasmin Kirsch, Matthias Hannig, Christian Hannig
Software Mentions: 4
Published: about 6 years ago

10.1186/s13071-020-04053-x

Modelling the monthly abundance of Culicoides biting midges in nine European countries using Random Forests machine learning
Cited by: 15
Author(s): Ana Carolina Cuéllar, Lene Jung Kjær, Andreas Baum, Anders Stockmarr, Henrik Skovgård, Søren Achim Nielsen, Matilda Andersson, Anders Lindström, Jan Chirico, Renke Lühken, S. Steinke, Ellen Kiel, Jörn Gethmann, Franz Josef Conraths, Magdalena Larska, Marcin Smreczak, Anna Orłowska, Inger Sofie Hamnes, Ståle Sviland, Petter Hopp, Katharina Brugger, Franz Rubel, Thomas Balenghien, Claire Garros, Ignace Rakotoarivony, Xavier Allène, Jonathan Lhoir, David Chavernac, Jean-Claude Delécolle, Bruno Mathieu, Delphine Delécolle, Marie-Laure Setier-Rio, Bethsabée Scheid, Miguel Ángel Miranda, Carlos Barceló, Javier Lucientes, Rolando Estrada, Alexander Mathis, Roger Venail, Wesley Tack, René Bødker
Software Mentions: 4
Published: over 4 years ago

10.1186/s13071-018-3182-0

Monthly variation in the probability of presence of adult Culicoides populations in nine European countries and the implications for targeted surveillance
Cited by: 17
Author(s): Ana Carolina Cuéllar, Lene Jung Kjær, Andreas Baum, Anders Stockmarr, Henrik Skovgård, Søren Achim Nielsen, Matilda Andersson, Anders Lindström, Jan Chirico, Renke Lühken, S. Steinke, Ellen Kiel, Jörn Gethmann, Franz Josef Conraths, Magdalena Larska, Marcin Smreczak, Anna Orłowska, Inger Sofie Hamnes, Ståle Sviland, Petter Hopp, Katharina Brugger, Franz Rubel, Thomas Balenghien, Claire Garros, Ignace Rakotoarivony, Xavier Allène, Jonathan Lhoir, David Chavernac, Jean-Claude Delécolle, Bruno Mathieu, Delphine Delécolle, Marie-Laure Setier-Rio, Roger Venail, Bethsabée Scheid, Miguel Ángel Miranda Chueca, Carlos Barceló, Javier Lucientes, Rolando Estrada, Alexander Mathis, Wesley Tack, René Bødker
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-017-10324-y

Automated Classification of Benign and Malignant Proliferative Breast Lesions
Cited by: 18
Author(s): Evani Radiya-Dixit, David C. Zhu, Andrew H. Beck
Software Mentions: 4
Published: about 7 years ago

10.1186/s12859-015-0644-7

SuRankCo: supervised ranking of contigs in de novo assemblies
Cited by: 13
Author(s): Mathias Kuhring, Piotr Wojtek Dabrowski, Vitor C. Piro, Andreas Nitsche, Bernhard Y. Renard
Software Mentions: 4
Published: over 9 years ago

10.1186/s12866-017-1022-6

Influence of chronic azithromycin treatment on the composition of the oropharyngeal microbial community in patients with severe asthma
Cited by: 22
Author(s): Guido Lopes dos Santos Santiago, Guy Brusselle, Kenny Dauwe, Pieter Deschaght, Chris Verhofstede, Dries Vaneechoutte, Ellen Deschepper, Paul Jordens, Guy Joos, Mario Vaneechoutte
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2020.01363

Microbial Communities Associated With Long-Term Tillage and Fertility Treatments in a Corn-Soybean Cropping System
Cited by: 47
Author(s): Ali Srour, Hala A. Ammar, Arjun Subedi, Mirian F. Pimentel, Rachel L. Cook, Jason P. Bond, Ahmad M. Fakhoury
Software Mentions: 4
Published: over 4 years ago

10.1186/s12874-018-0644-1

Machine learning methodologies versus cardiovascular risk scores, in predicting disease risk
Cited by: 58
Author(s): Alexandros C. Dimopoulos, Μάρα Νικολαϊδου, Francisco Félix Caballero, Worrawat Engchuan, Albert Sánchez-Niubò, Holger Arndt, José Luís Ayuso-Mateos, Josep María Haro, Somnath Chatterji, Ekavi Georgousopoulou, Christos Pitsavos, Demosthenes B. Panagiotakos
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0124721

Wavelet Representation of the Corneal Pulse for Detecting Ocular Dicrotism
Cited by: 5
Author(s): Tomasz Melcer, Monika E. Danielewska, D. Robert Iskander
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0137654

The Role of the Immune Response in the Pathogenesis of Thyroid Eye Disease: A Reassessment
Cited by: 15
Author(s): James T. Rosenbaum, Dongseok Choi, Amanda Wong, David J. Wilson, Hans E. Grossniklaus, Christina A. Harrington, Roger A. Dailey, John D. Ng, Eric A. Steele, Craig N. Czyz, Jill A. Foster, David T. Tse, Chris Alabiad, Sander R. Dubovy, Prashant K. Parekh, Gerald J. Harris, Michael Kazim, Payal Patel, Valerie A. White, Peter J. Dolman, Deepak P. Edward, Hind M. Alkatan, Hailah Al Hussain, Dinesh Selva, R. Patrick Yeatts, Bobby S. Korn, Don O. Kikkawa, Patrick Stauffer
Software Mentions: 4
Published: about 9 years ago

10.1186/1471-2288-12-107

Refining developmental coordination disorder subtyping with multivariate statistical methods
Cited by: 20
Author(s): Christophe Lalanne, Bruno Falissard, Bernard Golse, Laurence Vaivre‐Douret
Software Mentions: 4
Published: over 12 years ago

10.1186/s12874-017-0364-y

Simulation of complex data structures for planning of studies with focus on biomarker comparison
Cited by: 4
Author(s): Andreas Schulz, Daniela Zöller, Stefan Nickels, Manfred E. Beutel, Maria Blettner, Philipp S. Wild, Harald Binder
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0006825

Re-Shuffling of Species with Climate Disruption: A No-Analog Future for California Birds?
Cited by: 185
Author(s): Diana Stralberg, Dennis Jongsomjit, Christine A. Howell, Mark A. Snyder, John D. Alexander, John A. Wiens, Terry L. Root
Software Mentions: 4
Published: about 15 years ago

10.1186/1471-2105-15-8

Robustness of Random Forest-based gene selection methods
Cited by: 206
Author(s): Miron B. Kursa
Software Mentions: 4
Published: almost 11 years ago

10.3389/fmed.2021.637652

Diagnosis of Fibrosis Using Blood Markers and Logistic Regression in Southeast Asian Patients With Non-alcoholic Fatty Liver Disease
Cited by: 6
Author(s): Chao Sang, Hongmei Yan, Wah Kheong Chan, Xiaopeng Zhu, Tao Sun, Xinxia Chang, Mingfeng Xia, Xiaoyang Sun, Xiaowen Hu, Xin Gao, Jia Wang, Hua Bian, Tianlu Chen, Guoxiang Xie
Software Mentions: 4
Published: over 3 years ago

10.3390/molecules24101973

ACPred: A Computational Tool for the Prediction and Analysis of Anticancer Peptides
Cited by: 109
Author(s): Nalini Schaduangrat, Chanin Nantasenamat, Virapong Prachayasittikul, Watshara Shoombuatong
Software Mentions: 4
Published: over 5 years ago

10.3389/fnint.2019.00010

White Matter Connectome Correlates of Auditory Over-Responsivity: Edge Density Imaging and Machine-Learning Classifiers
Cited by: 2
Author(s): Seyedmehdi Payabvash, Eva M. Palacios, Julia P. Owen, Maxwell Wang, Teresa Tavassoli, Molly Gerdes, Annie Brandes‐Aitken, Pratik Mukherjee, Elysa J. Marco
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2018.02318

Commensal Escherichia coli Strains Can Promote Intestinal Inflammation via Differential Interleukin-6 Production
Cited by: 53
Author(s): Hatem Kittana, João Carlos Gomes-Neto, Kari Heck, Abby L. Geis, Rafael R. Segura Muñoz, Liz A. Cody, Robert Schmaltz, Laure B. Bindels, Rohita Sinha, Jesse M. Hostetter, Andrew K. Benson, Amanda E. Ramer‐Tait
Software Mentions: 4
Published: about 6 years ago

10.3390/molecules24142562

Assessing Geographical Origin of Gentiana Rigescens Using Untargeted Chromatographic Fingerprint, Data Fusion and Chemometrics
Cited by: 13
Author(s): Tao Shen, Hong Yu, Yuanzhong Wang
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0184321

A detailed comparison of analysis processes for MCC-IMS data in disease classification—Automated methods can replace manual peak annotations
Cited by: 7
Author(s): Salome Horsch, Dominik Kopczynski, Elias Kuthe, Jan Baumbach, Sven Rahmann, Jörg Rahnenführer
Software Mentions: 4
Published: about 7 years ago

10.3389/fnhum.2017.00555

Predicting Long-Term Cognitive Outcome Following Breast Cancer with Pre-Treatment Resting State fMRI and Random Forest Machine Learning
Cited by: 57
Author(s): Shelli R. Kesler, Arvind Rao, Douglas W. Blayney, Ingrid Oakley-Girvan, Meghan Sri Karuturi, Oxana Palesh
Software Mentions: 4
Published: about 7 years ago

10.3389/fnhum.2021.622224

Predicting Student Performance Using Machine Learning in fNIRS Data
Cited by: 10
Author(s): Amanda Yumi Ambriola Oku, João Ricardo Sato
Software Mentions: 4
Published: almost 4 years ago

10.1186/s13229-021-00450-w

Genetic and morphological estimates of androgen exposure predict social deficits in multiple neurodevelopmental disorder cohorts
Cited by: 4
Author(s): Brooke G. McKenna, Yongchao Huang, Kévin Vervier, Dabney Hofammann, Mary Cafferata, Seima Al-Momani, Florencia Lowenthal, Angela Zhang, Joanna Koh, Savantha Thenuwara, Leo Brueggeman, Ethan Bahl, Tanner Koomar, Natalie R. Pottschmidt, Taylor Kalmus, Lucas Casten, Taylor Thomas, Jacob J. Michaelson
Software Mentions: 4
Published: over 3 years ago

10.1038/srep08397

Diversity in gut bacterial community of school-age children in Asia
Cited by: 189
Author(s): Jiro Nakayama, Koichi Watanabe, Jiahui Jiang, Kazunori Matsuda, Shiou Huei Chao, Pri Haryono, Orawan La-ongkham, Martinus Agus Sarwoko, I Nengah Sujaya, Liang Zhao, Kang Ting Chen, Yen Po Chen, Hsueh Hui Chiu, Tomoko Hidaka, Na Huang, Chikako Kiyohara, Takashi Kurakawa, Naoshige Sakamoto, Kenji Sonomoto, Kousuke Tashiro, Hirokazu Tsuji, Ming Ju Chen, Vichai Leelavatcharamas, Chii Cherng Liao, Sunee Nitisinprasert, Endang Sri Rahayu, Fa Zheng Ren, Yao‐Chou Tsai, Yuan Kun Lee
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0134250

Short-Term Space-Use Patterns of Translocated Mojave Desert Tortoise in Southern California
Cited by: 20
Author(s): Matthew L. Farnsworth, Brett G. Dickson, Luke J. Zachmann, Ericka E. Hegeman, Amanda R. Cangelosi, T. G. Jackson, Amanda F. Scheib
Software Mentions: 4
Published: about 9 years ago

10.1038/s41598-018-36292-5

Metabolic phenotype of breast-fed infants, and infants fed standard formula or bovine MFGM supplemented formula: a randomized controlled trial
Cited by: 39
Author(s): Xuan He, Mariana Parenti, Tove Grip, Magnus Domellöf, Bo Lönnerdal, Olle Hernell, Niklas Timby, Carolyn M. Slupsky
Software Mentions: 4
Published: almost 6 years ago

10.3390/microorganisms8122043

Identification of Nitrogen Fixation Genes in Lactococcus Isolated from Maize Using Population Genomics and Machine Learning
Cited by: 10
Author(s): Shawn M. Higdon, Bihua C. Huang, A. B. Bennett, Bart C. Weimer
Software Mentions: 4
Published: almost 4 years ago

10.3390/microorganisms9081595

Habitats Are More Important Than Seasons in Shaping Soil Bacterial Communities on the Qinghai-Tibetan Plateau
Cited by: 7
Author(s): Rui Wang, Wei Miao, Jing Wang, Yongjun Lin
Software Mentions: 4
Published: over 3 years ago

Projects: cran: randomForest

Papers Mentioning randomForest 1,447