Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: randomForest

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/randomForest

Breiman and Cutler's Random Forests for Classification and Regression
59 versions
Latest release: over 2 years ago
351 dependent packages
92,890 downloads last month

Papers Mentioning randomForest 1,447

10.3390/s20102948
Speech Discrimination in Real-World Group Communication Using Audio-Motion Multimodal Sensing
Cited by: 0
Author(s): Takayuki Nozawa, Mizuki Uchiyama, Kazuhisa Honda, Tamio Nakano, Yoichi Miyake
Software Mentions: 1
Published: over 4 years ago
10.1128/mSystems.00594-19
Cutibacterium acnes (Propionibacterium acnes) 16S rRNA Genotyping of Microbial Samples from Possessions Contributes to Owner Identification
Cited by: 27
Author(s): Jiayue Yang, Tomoya Tsukimi, Mia Yoshikawa, Kenta Suzuki, Tomoki Takeda, Masaru Tomita, Shinji Fukuda
Software Mentions: 1
Published: almost 5 years ago
10.3390/s20164364
Machine Learning Models for Classifying Physical Activity in Free-Living Preschool Children
Cited by: 27
Author(s): Matthew Ahmadi, Toby Pavey, Stewart G. Trost
Software Mentions: 1
Published: over 4 years ago
10.1186/s12885-018-4104-4
Signaling protein signature predicts clinical outcome of non-small-cell lung cancer
Cited by: 7
Author(s): Boquan Jin, Fan Yang, Xiaomin Ying, Lin Gong, Shuofeng Hu, Qing Zhao, Yida Liao, Kezhong Chen, Teng Li, Yoshiaki Tai, Yuan Cao, Li Xiao, Yan Huang, Xiaoyan Zhan, Xuan-He Qin, Jin Wu, Shuai Chen, Shuang Guo, Yucheng Zhang, Jing Chen, Danhua Shen, Kunkun Sun, Lu Chen, Weihua Li, Ailing Li, Na Wang, Qing Xia, Jun Wang, Tao Zhou
Software Mentions: 1
Published: over 6 years ago
10.3390/cancers12103039
Radiomic Immunophenotyping of GSEA-Assessed Immunophenotypes of Glioblastoma and Its Implications for Prognosis: A Feasibility Study
Cited by: 17
Author(s): Justin Bo Kai Hsu, Gilbert Lee, Tzu Hao Chang, Shihping Kevin Huang, Nguyen Quoc Khanh Le, Yung Chieh Chen, Duen Pang Kuo, Yi-Tien Li, Cheng-Yu Chen
Software Mentions: 1
Published: about 4 years ago
10.3390/s21010063
Validating and Comparing Highly Resolved Commercial “Off the Shelf” PM Monitoring Sensors with Satellite Based Hybrid Models, for Improved Environmental Exposure Assessment
Cited by: 2
Author(s): Dan Lesser, Itzhak Katra, Michael Dorman, Homero Harari, Itai Kloog
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12885-020-07709-0
Application of Random Forest and data integration identifies three dysregulated genes and enrichment of Central Carbon Metabolism pathway in Oral Cancer
Cited by: 4
Author(s): Srija Mukhopadhyay, Sahana Ghosh, Debodipta Das, Pattatheyil Arun, Bidyut Roy, Nidhan K. Biswas, Arindam Maitra, Partha P. Majumder
Software Mentions: 1
Published: almost 4 years ago
10.1186/1471-2105-10-S14-S10
DNA barcode analysis: a comparison of phylogenetic and statistical classification methods
Cited by: 130
Author(s): Frédéric Austerlitz, Olivier David, Brigitte Schaeffer, Kevin Bleakley, Mădălina Olteanu, Raphaël Leblois, Michel Veuille, Catherine Larédo
Software Mentions: 1
Published: about 15 years ago
10.1371/journal.pntd.0006587
Mapping dengue risk in Singapore using Random Forest
Cited by: 56
Author(s): Janet Ong, Xu Liu, Jayanthi Rajarethinam, Suet Yheng Kok, Shaohong Liang, Choon Siang Tang, Alex R. Cook, Lee Ching Ng, Grace Yap
Software Mentions: 1
Published: over 6 years ago
10.1186/s12885-016-2361-7
Prediction of non-muscle invasive bladder cancer outcomes assessed by innovative multimarker prognostic models
Cited by: 8
Author(s): Evangelina López de Maturana, Antoni C. Picornell, A. Masson-Lecomte, Manolis Kogevinas, Mirari Márquez, Alfredo Carrato, Adonina Tardón, Josep Lloreta, Montserrat García‐Closas, Debra T. Silverman, Nathaniel Rothman, Stephen J. Chanock, Francisco X. Real, Michael E. Goddard, Núria Malats
Software Mentions: 1
Published: over 8 years ago
10.3390/metabo9090185
Neonatal Urine Metabolic Profiling and Development of Childhood Asthma
Cited by: 15
Author(s): Bo Chawes, Giuseppe Giordano, Paola Pirillo, Daniela Rago, Morten Arendt Rasmussen, Jakob Stokholm, Klaus Bønnelykke, Hans Bisgaard, Eugenio Baraldi
Software Mentions: 1
Published: about 5 years ago
10.1177/0962280213502437
A comparison of machine learning methods for classification using simulation with multiple real data examples from mental health studies
Cited by: 50
Author(s): Mizanur Khondoker, Richard Dobson, Caroline Skirrow, Andrew Simmons, Daniel Ståhl
Software Mentions: 1
Published: about 8 years ago
10.1186/gb-2012-13-7-r64
Staphylococcus epidermidis pan-genome sequence analysis reveals diversity of skin commensal and hospital infection-associated isolates
Cited by: 161
Author(s): Sean Conlan, Lilia A. Mijares, Jesse Becker, Robert W. Blakesley, Gerard G. Bouffard, Shelise Brooks, Holly Coleman, Jyoti Gupta, Natalie Gurson, Morgan Park, Brian Schmidt, Pamela J. Thomas, Michael Otto, Heidi H. Kong, Patrick R. Murray, Julia A. Segre
Software Mentions: 1
Published: almost 13 years ago
10.1016/j.medj.2021.03.014
Reduced blood-stage malaria growth and immune correlates in humans following RH5 vaccination
Cited by: 61
Author(s): Angela M. Minassian, Sarah E. Silk, Jordan R. Barrett, Carolyn M. Nielsen, Kazutoyo Miura, Ababacar Diouf, Carolin Loos, Jonathan K. Fallon, Ashlin Michell, Michael White, Nick J. Edwards, Ian Poulton, Celia H. Mitton, Ruth Payne, Michael Marks, Hector Maxwell-Scott, Antonio Querol-Rubiera, Karen Bisnauthsing, Rahul Batra, Tatiana Ogrina, Nathan J Brendish, Andreas C. Themistocleous, Thomas A. Rawlinson, Katherine J. Ellis, Doris Quinkert, Megan Baker, Raquel Lopez Ramon, Fernando Ramos Lopez, Lea Barfod, Pedro M. Folegatti, D Silman, Mehreen S. Datoo, Iona J. Taylor, Jing Jin, David Pulido, Alexander D. Douglas, Willem A. de Jongh, Robert Smith, Eleanor Berrie, Amy R. Noe, Carter L. Diggs, Lorraine Soisson, Rebecca Ashfield, Saul N Faust, Anna Goodman, Alison M. Lawrie, Fay L. Nugent, Galit Alter, Carole A. Long, Simon J. Draper
Software Mentions: 1
Published: over 3 years ago
10.1186/1476-072X-12-29
Modeling the spatial distribution of Chagas disease vectors using environmental variables and people´s knowledge
Cited by: 11
Author(s): Jaime Hernández, Ignacia Núñez, Antonella Bacigalupo, Pedro E. Cattan
Software Mentions: 1
Published: over 11 years ago
10.1186/s12885-017-3297-2
The E2F4 prognostic signature predicts pathological response to neoadjuvant chemotherapy in breast cancer patients
Cited by: 13
Author(s): Kenneth M. K. Mark, Frederick S. Varn, Matthew Ung, Qian Feng, Chao Cheng
Software Mentions: 1
Published: over 7 years ago
10.3390/ijms15057841
Alpha-Bulges in G Protein-Coupled Receptors
Cited by: 34
Author(s): Rob van der Kant, Gert Vriend
Software Mentions: 1
Published: over 10 years ago
10.3390/metabo9030054
Using Expert Driven Machine Learning to Enhance Dynamic Metabolomics Data Analysis
Cited by: 14
Author(s): Charlie Beirnaert, Laura Peeters, Pieter Meysman, Wout Bittremieux, Kenn Foubert, D. Custers, Anastasia Van der Auwera, Matthias Cuykx, Luc Pieters, Adrian Covaci, Kris Laukens
Software Mentions: 1
Published: over 5 years ago
10.3390/genes9060301
Decision Variants for the Automatic Determination of Optimal Feature Subset in RF-RFE
Cited by: 87
Author(s): Qi Chen, Zhaopeng Meng, Xinyi Liu, Qianguo Jin, Ran Su
Software Mentions: 1
Published: over 6 years ago
10.3390/metabo9080165
Microbial Transformations of Organically Fermented Foods
Cited by: 19
Author(s): Ruma Raghuvanshi, Allyssa G Grayson, Isabella Schena, Onyebuchi Amanze, Kezia Suwintono, Robert A. Quinn
Software Mentions: 1
Published: over 5 years ago
10.1186/s12933-015-0222-3
Sex influenced association of directly measured insulin sensitivity and serum transaminase levels: Why alanine aminotransferase only predicts cardiovascular risk in men?
Cited by: 21
Author(s): Barbara Buday, Péter Pach, Botond Literáti-Nagy, Márta Vitai, Györgyi Kovács, Zsuzsa Vecsei, László Korányi, Csaba Lengyel
Software Mentions: 1
Published: over 9 years ago
10.3390/toxins13080545
Comparative Analysis of Machine Learning Methods to Predict Growth of F. sporotrichioides and Production of T-2 and HT-2 Toxins in Treatments with Ethylene-Vinyl Alcohol Films Containing Pure Components of Essential Oils
Cited by: 3
Author(s): Eva M. Mateo, José V. Gómez, Andrea Tarazona, María Ángeles García-Esparza, Fernando Mateo
Software Mentions: 1
Published: over 3 years ago
10.1186/s13021-016-0058-5
Allometric models and aboveground biomass stocks of a West African Sudan Savannah watershed in Benin
Cited by: 15
Author(s): Adéyèmi Chabi, Sven Lautenbach, Vincent Orékan, Nicholas Kyei‐Baffour
Software Mentions: 1
Published: over 8 years ago
10.1186/s12967-016-0928-3
ProInflam: a webserver for the prediction of proinflammatory antigenicity of peptides and proteins
Cited by: 44
Author(s): Sudheer Gupta, Midhun K. Madhu, Ashok Sharma, Vineet K. Sharma
Software Mentions: 1
Published: over 8 years ago
10.3390/metabo11050317
Circulating Metabolites Associated with Body Fat and Lean Mass in Adults with Overweight/Obesity
Cited by: 10
Author(s): Christopher Papandreou, Jesús García‐Gavilán, Lucía Camacho-Barcia, Thorsten Hansen, Anders Sjödin, Joanne A. Harrold, Jason C.G. Halford, Mònica Bulló
Software Mentions: 1
Published: over 3 years ago
10.1002/cam4.1399
Liquid biopsy by <scp>NGS</scp>: differential presence of exons (<scp>DPE</scp>) in cell‐free <scp>DNA</scp> reveals different patterns in metastatic and nonmetastatic colorectal cancer
Cited by: 15
Author(s): Susana Olmedillas‐López, Dolores C. García‐Olmo, Mariano García‐Arranz, Ramón Peiró‐Pastor, Begoña Aguado, Damián Garcı́a-Olmo
Software Mentions: 1
Published: over 6 years ago
10.1038/tp.2017.8
Pathway-wide association study identifies five shared pathways associated with schizophrenia in three ancestral distinct populations
Cited by: 21
Author(s): C Liu, Chad Bousman, Christos Pantelis, Efstratios Skafidas, D Zhang, Weihua Yue, Ian Everall
Software Mentions: 1
Published: almost 8 years ago
10.1186/s13073-015-0213-8
DNA methylation loci associated with atopy and high serum IgE: a genome-wide application of recursive Random Forest feature selection
Cited by: 57
Author(s): Todd M. Everson, Genevieve Lyons, Hongmei Zhang, Nelís Soto‐Ramírez, Gabrielle A. Lockett, Veeresh Patil, Simon Kebede Merid, Cilla Sӧderhӓll, Erik Melén, John W. Holloway, Syed Hasan Arshad, Wilfried Karmaus
Software Mentions: 1
Published: over 9 years ago
10.1186/1471-2407-6-229
Translating microarray data for diagnostic testing in childhood leukaemia
Cited by: 39
Author(s): Katrin Hoffmann, Martin J Firth, Alex H. Beesley, Nicholas de Klerk, Ursula R. Kees
Software Mentions: 1
Published: about 18 years ago
10.1002/ece3.1391
Spatially variable coevolution between a haemosporidian parasite and the<scp>MHC</scp>of a widely distributed passerine
Cited by: 10
Author(s): Matthew R. Jones, Zachary A. Cheviron, Matthew D. Carling
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0043943
Land Cover Change in Colombia: Surprising Forest Recovery Trends between 2001 and 2010
Cited by: 220
Author(s): Ana María Sánchez-Cuervo, T. Mitchell Aide, Matthew L. Clark, Andrés Etter
Software Mentions: 1
Published: about 12 years ago
10.3389/fvets.2021.609348
Cecal Microbiota Modulates Fat Deposition in Muscovy Ducks
Cited by: 15
Author(s): Wentao Lyu, Xiuting Liu, Lizhi Liu, Bing Dai, Wang Wen, Hua Yang, Yingping Xiao
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pntd.0005885
Modeling the environmental suitability of anthrax in Ghana and estimating populations at risk: Implications for vaccination and control
Cited by: 42
Author(s): Ian Kracalik, Ernest Kenu, Evans Nsoh Ayamdooh, Emmanuel Allegye-Cudjoe, Paul Nokuma Polkuu, Joseph Asamoah Frimpong, Kofi Mensah Nyarko, William A. Bower, Rita M. Traxler, Jason K. Blackburn
Software Mentions: 1
Published: about 7 years ago
10.15252/emmm.201505790
Concise gene signature for point‐of‐care classification of tuberculosis
Cited by: 97
Author(s): Jeroen Maertzdorf, Gayle McEwen, January Weiner, Tian Song, Eric Lader, Ulrich Schriek, Harriet Mayanja‐Kizza, Martin O. C. Ota, John Kenneth, Stefan H. E. Kaufmann
Software Mentions: 1
Published: almost 9 years ago
10.1186/s13058-015-0557-4
Long non-coding RNA expression profiles predict metastasis in lymph node-negative breast cancer independently of traditional prognostic markers
Cited by: 50
Author(s): Kristina Pilekær Sørensen, Mads Thomassen, Qihua Tan, Martin Bak, Søren Cold, Mark Burton, Martin Jakob Larsen, Torben A. Kruse
Software Mentions: 1
Published: over 9 years ago
10.1128/mBio.00644-19
Diversification of Colonization Factors in a Multidrug-Resistant Escherichia coli Lineage Evolving under Negative Frequency-Dependent Selection
Cited by: 93
Author(s): Alan McNally, Teemu Kallonen, Christopher Connor, Khalil Abudahab, David M. Aanensen, Carolyne Horner, Sharon J. Peacock, Julian Parkhill, Nicholas J. Croucher, Jukka Corander
Software Mentions: 1
Published: over 5 years ago
10.1186/s13075-017-1295-z
Circulating DNA in rheumatoid arthritis: pathological changes and association with clinically used serological markers
Cited by: 50
Author(s): Elena Y. Rykova, A. Sizikov, Dirk Roggenbuck, О. В. Антоненко, L. O. Bryzgalov, Evgeny S. Morozkin, Ksenia Skvortsova, Valentin V. Vlassov, Pavel P. Laktionov, В. А. Козлов
Software Mentions: 1
Published: over 7 years ago
10.3389/fspor.2020.576655
Machine Learning to Predict Lower Extremity Musculoskeletal Injury Risk in Student Athletes
Cited by: 6
Author(s): Maria Henriquez, Jacob Sumner, Mallory Faherty, Timothy C. Sell, Brinnae Bent
Software Mentions: 1
Published: about 4 years ago
10.1002/brb3.1384
Individualized treatment response prediction of dialectical behavior therapy for borderline personality disorder using multimodal magnetic resonance imaging
Cited by: 26
Author(s): Mike M. Schmitgen, Inga Niedtfeld, Ruth Schmitt, Falk Mancke, Dorina Winter, Christian Schmahl, Sabine C. Herpertz
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0220174
Factors associated with the onset of Alzheimer's disease: Data mining in the French nationwide discharge summary database between 2008 and 2014
Cited by: 12
Author(s): Michaël Rochoy, Régis Bordet, Sophie Gautier, Emmanuel Chazard
Software Mentions: 1
Published: over 5 years ago
10.1038/s41416-019-0718-9
Improved early detection of ovarian cancer using longitudinal multimarker models
Cited by: 51
Author(s): Harry J. Whitwell, Jenny Worthington, Oleg Blyuss, Aleksandra Gentry‐Maharaj, Andy Ryan, Richard Gunu, Jatinderpal Kalsi, Usha Menon, Ian Jacobs, Alexey Zaikin, John F. Timms
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0191658
Oncologic emergencies in a cancer center emergency department and in general emergency departments countywide and nationwide
Cited by: 17
Author(s): Zhi Yang, Runxiang Yang, Min Ji Kwak, Aiham Qdaisat, Junzhong Lin, Charles E. Begley, Cielito C. Reyes–Gibby, Sai Ching Jim Yeung
Software Mentions: 1
Published: almost 7 years ago
10.1111/gcb.14996
Climate‐induced changes in the suitable habitat of cold‐water corals and commercially important deep‐sea fishes in the North Atlantic
Cited by: 94
Author(s): Telmo Morato, J.M. González-Irusta, Carlos Dominguez‐Carrió, Chih‐Lin Wei, Andrew J. Davies, Andrew K. Sweetman, Gerald H. Taranto, Lindsay Beazley, Ana García‐Alegre, Anthony Grehan, Pascal Laffargue, F. Javier Murillo, Mar Sacau, Sandrine Vaz, Ellen Kenchington, Sophie Arnaud‐Haond, Oisín Callery, Giovanni Chimienti, Erik E. Cordes, Hrönn Egilsdóttir, André Freiwald, Ryan Gasbarro, Cristina Gutiérrez‐Zárate, Matthew Gianni, Kent D. Gilkinson, Vonda E. Wareham Hayes, Dierk Hebbeln, Kevin J. Hedges, Lea‐Anne Henry, David E. Johnson, Mariano Koen‐Alonso, Cam Lirette, Francesco Mastrototaro, Lénaïck Menot, Tina N. Molodtsova, P. Durán-Muñoz, Covadonga Orejas, María Grazia Pennino, Patricia Puerta, Stefán Á. Ragnarsson, Berta Ramiro‐Sánchez, Jake Rice, Jesús Rivera, J. Murray Roberts, Steve W. Ross, José L. Rueda, Íris Sampaio, Paul V. R. Snelgrove, David Stirling, Margaret A. Treble, Javier Urra, Johanne Vad, Dick van Oevelen, Les Watling, Wojciech Walkusz, Claudia Wienberg, Mathieu Woillez, Lisa A. Levin, Marina Carreiro‐Silva
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0148181
Discovery of Novel Hepatitis C Virus NS5B Polymerase Inhibitors by Combining Random Forest, Multiple e-Pharmacophore Modeling and Docking
Cited by: 39
Author(s): Yu Wei, Jinlong Li, Jie Qing, Huang Minyuan, Ming Wu, Fenghua Gao, Dongmei Li, Zhangyong Hong, Lingbao Kong, Weiqiang Huang, Jianping Lin
Software Mentions: 1
Published: almost 9 years ago
10.1111/gcb.15360
Large‐scale early‐wilting response of Central European forests to the 2018 extreme drought
Cited by: 64
Author(s): Philipp Brun, Achilleas Psomas, Christian Ginzler, Wilfried Thuiller, Massimiliano Zappa, Niklaus E. Zimmermann
Software Mentions: 1
Published: about 4 years ago
10.3389/fpubh.2021.499309
Staying Ahead of the Epidemiologic Curve: Evaluation of the British Columbia Asthma Prediction System (BCAPS) During the Unprecedented 2018 Wildfire Season
Cited by: 2
Author(s): Sarah B. Henderson, Kathryn Morrison, Kathleen McLean, Yuanyuan Ding, Jiayun Yao, Gavin Shaddick, David L. Buckeridge
Software Mentions: 1
Published: over 3 years ago
10.1186/s13075-019-2066-9
Protein profiling and network enrichment analysis in individuals before and after the onset of rheumatoid arthritis
Cited by: 8
Author(s): Mikael Brink, Anders Lundquist, Andrey Alexeyenko, Kristina Lejon, Solbritt Rantapää‐Dahlqvist
Software Mentions: 1
Published: almost 5 years ago
10.7554/eLife.12814
The yin–yang of kinase activation and unfolding explains the peculiarity of Val600 in the activation segment of BRAF
Cited by: 25
Author(s): Christina Kiel, Hannah Benisty, Verónica Lloréns‐Rico, Luís Serrano
Software Mentions: 1
Published: almost 9 years ago
10.3389/fpsyt.2020.00416
Prediction of Smoking Behavior From Single Nucleotide Polymorphisms With Machine Learning Approaches
Cited by: 8
Author(s): Yi Xu, Liyu Cao, Xinyi Zhao, Yinghao Yao, Qiang Liu, Bin Zhang, Yan Wang, Ying Mao, Yunlong Ma, Z. Jennie, Thomas J. Payne, Ming D. Li, Lanjuan Li
Software Mentions: 1
Published: over 4 years ago
10.3390/biomedicines8120597
Differential Role of Circulating microRNAs to Track Progression and Pre-Symptomatic Stage of Chronic Heart Failure: A Pilot Study
Cited by: 18
Author(s): Yuri D’Alessandra, Mattia Chiesa, Maria Cristina Carena, Antonio Paolo Beltrami, Paola Rizzo, Marta Buzzetti, Veronica Ricci, Roberto Ferrari, Alessandro Fucili, Ugolino Livi, Aneta Aleksova, Giulio Pompilio, Gualtiero I. Colombo
Software Mentions: 1
Published: almost 4 years ago
10.1128/mSphere.00001-15
Manipulation of the Gut Microbiota Reveals Role in Colon Tumorigenesis
Cited by: 87
Author(s): Joseph P. Zackular, Nielson T. Baxter, Grace Y. Chen, Patrick D. Schloss
Software Mentions: 1
Published: over 8 years ago
10.1007/s11306-019-1532-3
Addressing the pitfalls when designing intervention studies to discover and validate biomarkers of habitual dietary intake
Cited by: 14
Author(s): Amanda J. Lloyd, Naomi D. Willis, Thomas Wilson, Hassan Zubair, Edward S. Chambers, Isabel García-Pérez, Long Xie, Kathleen Tailliart, Manfred Beckmann, John C. Mathers, John Draper
Software Mentions: 1
Published: over 5 years ago
10.1155/2014/262850
Recognition of 27-Class Protein Folds by Adding the Interaction of Segments and Motif Information
Cited by: 8
Author(s): Zhenxing Feng, Xiuzhen Hu
Software Mentions: 1
Published: almost 11 years ago
10.1002/hbm.25423
Human immune deficiency virus‐related structural alterations in the brain are dependent on age
Cited by: 7
Author(s): Jing Zhao, Zhe Ma, Feng Chen, Li Li, Meiji Ren, Aixin Li, Bin Jing, Hongjun Li
Software Mentions: 1
Published: over 3 years ago
10.1186/s40249-021-00874-9
Identification of the high-risk area for schistosomiasis transmission in China based on information value and machine learning: a newly data-driven modeling attempt
Cited by: 15
Author(s): Yanfeng Gong, Ling-Qian Zhu, Yinlong Li, Lijuan Zhang, Jing-Bo Xue, Xianwen Shang, Shan Lv, Jing Xu, Shi-Zhu Li
Software Mentions: 1
Published: over 3 years ago
10.1128/mSphere.00351-17
High-Fat Diet Changes Fungal Microbiomes and Interkingdom Relationships in the Murine Gut
Cited by: 90
Author(s): Timothy Heisel, Emmanuel Montassier, Abigail Johnson, Gabriel A. Al‐Ghalith, Yi Lin, Wei Li, Dan Knights, Cheryl A. Gale
Software Mentions: 1
Published: about 7 years ago
10.1128/mSphereDirect.00536-17
A Dirichlet-Multinomial Bayes Classifier for Disease Diagnosis with Microbial Compositions
Cited by: 5
Author(s): Xiang Gao, Huaiying Lin, Qunfeng Dong
Software Mentions: 1
Published: almost 7 years ago
10.1001/jamanetworkopen.2018.6816
Comparison of US County-Level Public Health Performance Rankings With County Cluster and National Rankings
Cited by: 14
Author(s): Megan Wallace, Joshua M. Sharfstein, Joshua Kaminsky, Justin Lessler
Software Mentions: 1
Published: almost 6 years ago
10.1001/jamanetworkopen.2018.1405
Performance of Electronic Prediction Rules for Prevalent Delirium at Hospital Admission
Cited by: 20
Author(s): Christopher Halladay, Andrea Yevchak Sillner, James L. Rudolph
Software Mentions: 1
Published: over 6 years ago
10.3389/fpsyt.2019.00378
Baseline Serum Levels of Beclin-1, but Not Inflammatory Factors, May Predict Antidepressant Treatment Response in Chinese Han Patients With MDD: A Preliminary Study
Cited by: 8
Author(s): He Shen, Duan Zeng, Fang Xu, Jianping Zhang, Nan Zhao, Qiang Wang, Jiali Shi, Zhiyun Lin, Wenjuan Yu, Huafang Li
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0154515
Defining Disease Phenotypes in Primary Care Electronic Health Records by a Machine Learning Approach: A Case Study in Identifying Rheumatoid Arthritis
Cited by: 62
Author(s): Shang‐Ming Zhou, Fabiola Fernández‐Gutiérrez, Jonathan Kennedy, Roxanne Cooksey, Mark Atkinson, Spiros Denaxas, Stefan Siebert, William G Dixon, Terence W O’Neill, Ernest Choy, Cathie Sudlow, UK Biobank Follow-up, Sinéad Brophy
Software Mentions: 1
Published: over 8 years ago
10.1038/s41405-021-00057-6
Predicting all-cause 90-day hospital readmission for dental patients using machine learning methods
Cited by: 6
Author(s): Wei Li, Martin S. Lipsky, Eric S. Hon, Weicong Su, Sharon Su, Yao He, Richard Holubkov, Xiaoming Sheng, Man Hung
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0033663
Mirna Expression Profiles Identify Drivers in Colorectal and Pancreatic Cancers
Cited by: 133
Author(s): Ada Piepoli, Francesca Tavano, Massimiliano Copetti, Tommaso Mazza, Orazio Palumbo, Anna Panza, Fabio F. di Mola, Valerio Pazienza, Gianluigi Mazzoccoli, Giuseppe Biscaglia, Annamaria Gentile, Nicola Mastrodonato, Massimo Carella, Fabio Pellegrini, Pierluigi di Sebastiano, Angelo Andriulli
Software Mentions: 1
Published: over 12 years ago
10.1099/mgen.0.000251
Genomic correlates of extraintestinal infection are linked with changes in cell morphology in Campylobacter jejuni
Cited by: 4
Author(s): Nicole E. Wheeler, Timothy Blackmore, Angela Reynolds, Anne C. Midwinter, Jonathan Marshall, Nigel P. French, Matthew S. Savoian, Paul P. Gardner, Patrick J. Biggs
Software Mentions: 1
Published: almost 6 years ago
10.3389/fpls.2021.665471
The HADES Yield Prediction System – A Case Study on the Turkish Hazelnut Sector
Cited by: 9
Author(s): Simone Bregaglio, Kim Fischer, Fabrizio Ginaldi, Taynara Tuany Borges Valeriano, Laura Giustarini
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0016773
Blood Profile of Proteins and Steroid Hormones Predicts Weight Change after Weight Loss with Interactions of Dietary Protein Level and Glycemic Index
Cited by: 33
Author(s): Ping Wang, Claus Holst, Malene R. Andersen, Arne Astrup, Freek G. Bouwman, Sanne van Otterdijk, Will K. W. H. Wodzig, Marleen A. van Baak, Thomas Meinert Larsen, Susan A. Jebb, Anthony Kafatos, Andreas F. H. Pfeiffer, J. Alfredo Martínéz, Teodora Handjieva‐Darlenska, Marie Kunešová, Wim H. M. Saris, E.C.M. Mariman
Software Mentions: 1
Published: almost 14 years ago
10.1155/2021/9201235
Constructing a Predictive Model of Depression in Chemotherapy Patients with Non-Hodgkin’s Lymphoma to Improve Medical Staffs’ Psychiatric Care
Cited by: 10
Author(s): Cheng Hu, Qian Li, Ji Shou, FengXian Zhang, Xia Li, Min Wu, Menglei Xu, Li Xu
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0072093
Mapping Sub-Antarctic Cushion Plants Using Random Forests to Combine Very High Resolution Satellite Imagery and Terrain Modelling
Cited by: 27
Author(s): P. Bricher, Arko Lucieer, Justine Shaw, Aleks Terauds, Dana M. Bergstrom
Software Mentions: 1
Published: over 11 years ago
10.1186/s13326-015-0010-8
Development and validation of a classification approach for extracting severity automatically from electronic health records
Cited by: 16
Author(s): Mary Regina Boland, Nicholas P. Tatonetti, George Hripcsak
Software Mentions: 1
Published: over 9 years ago
10.1155/2021/6079163
Evaluation of Feature Selection Methods for Mammographic Breast Cancer Diagnosis in a Unified Framework
Cited by: 4
Author(s): Chun-Jiang Tian, Jian Lv, Xinhe Xu
Software Mentions: 1
Published: about 3 years ago
10.3389/fpls.2016.00390
Predicting Pre-planting Risk of Stagonospora nodorum blotch in Winter Wheat Using Machine Learning Models
Cited by: 41
Author(s): Lucky K. Mehra, Christina Cowger, Kevin Gross, P. S. Ojiambo
Software Mentions: 1
Published: over 8 years ago
10.3389/fpls.2019.00258
Ecometabolomic Analysis of Wild Populations of Pilocarpus pennatifolius (Rutaceae) Using Unimodal Analyses
Cited by: 13
Author(s): Daniella Allevato, Eduardo Kiyota, Paulo Mazzafera, Kevin C. Nixon
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0154581
Diatom Cooccurrence Shows Less Segregation than Predicted from Niche Modeling
Cited by: 22
Author(s): Marius Bottin, Janne Soininen, Didier Alard, Juliette Rosebery
Software Mentions: 1
Published: over 8 years ago
10.1186/s12938-017-0357-4
Using random forests for assistance in the curation of G-protein coupled receptor databases
Cited by: 6
Author(s): Aleksei Shkurin, Alfredo Vellido
Software Mentions: 1
Published: over 7 years ago
10.1186/s40364-018-0143-x
Aptamer-based search for correlates of plasma and serum water T2: implications for early metabolic dysregulation and metabolic syndrome
Cited by: 11
Author(s): Vipulkumar Patel, Alok Dwivedi, Sneha Deodhar, Ina Mishra, David P. Cistola
Software Mentions: 1
Published: about 6 years ago
10.1186/1758-2946-5-34
A big data approach to the ultra-fast prediction of DFT-calculated bond energies
Cited by: 44
Author(s): Xiaohui Qu, Diogo A. R. S. Latino, João Aires-de-Sousa
Software Mentions: 1
Published: over 11 years ago
10.1186/1758-2946-5-42
Benchmarking of protein descriptor sets in proteochemometric modeling (part 2): modeling performance of 13 amino acid descriptor sets
Cited by: 63
Author(s): Gerard J. P. van Westen, Remco F. Swier, Isidro Cortés-Ciriano, Jörg K. Wegner, John P. Overington, Adriaan P. IJzerman, Herman van Vlijmen, Andreas Bender
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0101444
Non-Invasive Separation of Alcoholic and Non-Alcoholic Liver Disease with Predictive Modeling
Cited by: 41
Author(s): Jan-Peter Sowa, Özgür Atmaca, Alişan Kahraman, Martin Schlattjan, Marion Lindner, Svenja Sydor, Norbert Scherbaum, K Lackner, Guido Gerken, Dominik Heider, Gavin E. Arteel, Yeşim Erim, Ali Canbay
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0056684
Effects of Management Tactics on Meeting Conservation Objectives for Western North American Groundfish Fisheries
Cited by: 26
Author(s): Michael C. Melnychuk, Jeannette A. Banobi, Ray Hilborn
Software Mentions: 1
Published: over 11 years ago
10.7554/eLife.64827
Longitudinal proteomic profiling of dialysis patients with COVID-19 reveals markers of severity and predictors of death
Cited by: 51
Author(s): Jack Gisby, Candice Clarke, Nicholas Medjeral-Thomas, Talat H. Malik, Artemis Papadaki, Paige M Mortimer, Norzawani Buang, Shanice Lewis, Marie Pereira, Frédéric Toulza, Ester Fagnano, Marie‐Anne Mawhin, Emma E Dutton, Lunnathaya Tapeng, Alison F. Richard, Paul D. W. Kirk, Jacques Behmoaras, Eleanor Sandhu, Stephen P McAdoo, Maria Prendecki, Matthew C. Pickering, Marina Botto, Michelle Willicombe, David C. Thomas, James E. Peters
Software Mentions: 1
Published: over 3 years ago
10.1007/s10533-017-0310-4
Predicting the standing stock of organic carbon in surface sediments of the North–West European continental shelf
Cited by: 50
Author(s): Markus Diesing, Silke Kröger, Robert P. Parker, Christopher Jenkins, Claire Mason, Keith Weston
Software Mentions: 1
Published: almost 8 years ago
10.3390/jcm8081156
Outpatient Readmission in Rheumatology: A Machine Learning Predictive Model of Patient’s Return to the Clinic
Cited by: 11
Author(s): Alfredo Madrid, J. Font, Mario Vega-Barbas, Leticia León-Mateos, D. Freites, Cristina Lajas, Esperanza Pato, Juan A. Jover, Lydia Abasolo-Alcázar, Luis Rodríguez‐Rodríguez
Software Mentions: 1
Published: over 5 years ago
10.1186/s40168-016-0171-4
Reduced diversity and altered composition of the gut microbiome in individuals with myalgic encephalomyelitis/chronic fatigue syndrome
Cited by: 236
Author(s): Ludovic Giloteaux, Julia K. Goodrich, William A. Walters, Susan Levine, Ruth E. Ley, Maureen R. Hanson
Software Mentions: 1
Published: over 8 years ago
10.1186/2049-2618-2-44
The adult nasopharyngeal microbiome as a determinant of pneumococcal acquisition
Cited by: 62
Author(s): Amelieke J. H. Cremers, Aldert Zomer, Jenna F. Gritzfeld, Gerben Ferwerda, Sacha A. F. T. van Hijum, Daniela M. Ferreira, Joshua R. Shak, Keith P. Klugman, Jos Boekhorst, Harro M. Timmerman, Marien I. de Jonge, Stephen B. Gordon, Peter W. M. Hermans
Software Mentions: 1
Published: almost 10 years ago
10.1186/s13054-021-03694-3
Ceftolozane/tazobactam versus meropenem in patients with ventilated hospital-acquired bacterial pneumonia: subset analysis of the ASPECT-NP randomized, controlled phase 3 trial
Cited by: 16
Author(s): Jean François Timsit, Jennifer A. Huntington, Richard G. Wunderink, Nobuaki Shime, Marin H. Kollef, Ülo Kivistik, Martin Nováček, Álvaro Réa-Neto, Ignacio Martín‐Loeches, Brian Yu, Erin Jensen, Joan R. Butterton, Dominik J Wolf, Elizabeth G. Rhee, Christopher Bruno
Software Mentions: 1
Published: over 3 years ago
10.1186/1756-0381-7-2
Risk estimation using probability machines
Cited by: 14
Author(s): Abhijit Dasgupta, Silke Szymczak, Jason H. Moore, Joan E. Bailey-Wilson, James D. Malley
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0116106
16S Classifier: A Tool for Fast and Accurate Taxonomic Classification of 16S rRNA Hypervariable Regions in Metagenomic Datasets
Cited by: 69
Author(s): Nikhil Chaudhary, Ashok Sharma, P. C. Agarwal, Ankit Gupta, Vineet K. Sharma
Software Mentions: 1
Published: almost 10 years ago
10.1186/s40168-018-0520-6
A metagenomic study of the gut microbiome in Behcet’s disease
Cited by: 154
Author(s): Zi Ye, Ni Zhang, Chunyan Wu, Mengjie Zhang, Qingfeng Wang, Xinyue Huang, Liping Du, Qingfeng Cao, Jihong Tang, Chunjiang Zhou, Shengping Hou, Yue He, Qian Xu, Xiong Xiao, Aize Kijlstra, Nan Qin, Peizeng Yang
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0058695
Identifying Areas of the Visual Field Important for Quality of Life in Patients with Glaucoma
Cited by: 86
Author(s): Hiroshi Murata, Hiroyo Hirasawa, Yuka Aoyama, Kenji Sugisaki, Makoto Araie, Chihiro Mayama, Makoto Aihara, Ryo Asaoka
Software Mentions: 1
Published: over 11 years ago
10.1186/1471-2105-12-165
Identification of microRNA precursors based on random forest with network-level representation method of stem-loop structure
Cited by: 36
Author(s): Jiamin Xiao, Xiaojing Tang, Yizhou Li, Zheng Fang, Dandan Ma, Yangzhige He, Menglong Li
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0160591
Highly Multiplexed Imaging Uncovers Changes in Compositional Noise within Assembling Focal Adhesions
Cited by: 5
Author(s): Jana Harizanova, Yessica Fermin, Rahuman S. Malik Sheriff, Jakob Wieczorek, Katja Ickstadt, Hernán E. Grecco, Eli Zamir
Software Mentions: 1
Published: over 8 years ago
10.1007/s10822-013-9688-9
A structure-guided approach for protein pocket modeling and affinity prediction
Cited by: 8
Author(s): Rocco Varela, Ann E. Cleves, Russell Spitzer, Ajay N. Jain
Software Mentions: 1
Published: about 11 years ago
10.1186/1756-0381-4-26
Improved Bevirimat resistance prediction by combination of structural and sequence-based classifiers
Cited by: 20
Author(s): J. Nikolaj Dybowski, Mona Riemenschneider, Sascha Hauke, Martin Pyka, Jens Verheyen, Daniel Hoffmann, Dominik Heider
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0064735
Diagnostic Value of the Impairment of Olfaction in Parkinson's Disease
Cited by: 36
Author(s): Swaantje Casjens, Angelika Eckert, Dirk Woitalla, Gisa Ellrichmann, Michael Turewicz, Christian Stephan, Martin Eisenacher, Caroline May, Helmut E. Meyer, Thomas Brüning, Beate Pesch
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0254928
Surface soil metal elements variability affected by environmental and soil properties
Cited by: 3
Author(s): Wei Wu, Yu Li, Ming-Shu Yan, Yang Lechao, Juan Lei, Hongbin Liu
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.ppat.1007888
Bacteriophages benefit from generalized transduction
Cited by: 62
Author(s): Alfred Fillol-Salom, Ahlam Alsaadi, Jorge Moura de Sousa, Li Zhong, Kevin R. Foster, Eduardo P. C. Rocha, José R. Penadés, Hanne Ingmer, Jakob Haaber
Software Mentions: 1
Published: over 5 years ago
10.3389/fneur.2019.00976
Associating Cognition With Amyloid Status Using Partially Ordered Set Analysis
Cited by: 3
Author(s): Sarah Carr, Judith Jaeger, Shijia Bian, Ping He, Nancy N. Maserejian, Wenting Wang, Paul Maruff, Ahmed Enayetallah, Yanming Wang, Zhengyi Chen, Alan J. Lerner, Curtis Tatsuoka
Software Mentions: 1
Published: about 5 years ago
10.3390/microorganisms8101465
Association of Virulence and Antibiotic Resistance in Salmonella—Statistical and Computational Insights into a Selected Set of Clinical Isolates
Cited by: 10
Author(s): Daleniece Higgins, Nabanita Mukherjee, Chandan Pal, Irshad M. Sulaiman, Yu Jiang, Simon Hanna, John R. Dunn, Wilfried Karmaus, Pratik Banerjee
Software Mentions: 1
Published: about 4 years ago
10.3389/fmolb.2016.00030
Feature Selection Methods for Early Predictive Biomarker Discovery Using Untargeted Metabolomic Data
Cited by: 71
Author(s): Dhouha Grissa, Mélanie Pétéra, Marion Brandolini, Amedeo Napoli, Blandine Comte, Estelle Pujos‐Guillot
Software Mentions: 1
Published: over 8 years ago
10.1038/s41378-021-00243-4
A monolithic single-chip point-of-care platform for metabolomic prostate cancer detection
Cited by: 13
Author(s): Valerio F. Annese, S. H. Patil, Chunxiao Hu, Christos Giagkoulovits, Mohammed A. Al-Rawhani, James P. Grant, Marion Macleod, David J. Clayton, Liam M. Heaney, Rónán Daly, Claudio Accarino, Yash D. Shah, Boon Chong Cheah, James Beeley, T.R. Jeffry Evans, Robert J. Jones, Michael P. Barrett, David R. S. Cumming
Software Mentions: 1
Published: over 3 years ago