cran: randomForest | Projects | Ecosyste.ms: Papers

10.1186/s13059-016-1045-6

Multiplexed, targeted profiling of single-cell proteomes and transcriptomes in a single reaction
Cited by: 135
Author(s): Alex S. Genshaft, Shuqiang Li, Caroline J. Gallant, Spyros Darmanis, Sanjay M. Prakadan, Carly G. K. Ziegler, Martin Lundberg, Fabrice Simon, Joyce Hong, Aviv Regev, Kenneth J. Livak, Ulf Landegren, Alex K. Shalek
Software Mentions: 2
Published: about 8 years ago

10.1186/s13059-020-02033-z

Approaches for integrating heterogeneous RNA-seq data reveal cross-talk between microbes and genes in asthmatic patients
Cited by: 4
Author(s): Daniel Spakowicz, Shaoke Lou, Brian Barron, José L. Gómez, Tianxiao Li, Qing Liu, Nicole Grant, Xiting Yan, Rebecca Hoyd, George M. Weinstock, Geoffrey Chupp, Mark Gerstein
Software Mentions: 2
Published: over 4 years ago

10.1186/s13021-020-00143-6

Variability and uncertainty in forest biomass estimates from the tree to landscape scale: the role of allometric equations
Cited by: 41
Author(s): Anthony G. Vorster, Paul Evangelista, Atticus Stovall, Seth Ex
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms20225743

Meta-iAVP: A Sequence-Based Meta-Predictor for Improving the Prediction of Antiviral Peptides Using Effective Feature Representation
Cited by: 69
Author(s): Nalini Schaduangrat, Chanin Nantasenamat, Virapong Prachayasittikul, Watshara Shoombuatong
Software Mentions: 2
Published: about 5 years ago

10.1186/s13073-016-0331-y

Dysbiosis, inflammation, and response to treatment: a longitudinal study of pediatric subjects with newly diagnosed inflammatory bowel disease
Cited by: 194
Author(s): Kelly A. Shaw, Madeline Bertha, Tatyana Hofmekler, Pankaj Chopra, Tommi Vatanen, Abhiram Srivatsa, Jarod Prince, Archana Kumar, Cary G. Sauer, Michael E. Zwick, Glen A. Satten, Aleksandar D. Kostic, Jennifer G. Mullé, Ramnik J. Xavier, Subra Kugathasan
Software Mentions: 2
Published: over 8 years ago

10.1002/cam4.3284

Gene signature‐based prediction of triple‐negative breast cancer patient response to Neoadjuvant chemotherapy
Cited by: 17
Author(s): Yanding Zhao, Evelien Schaafsma, Chao Cheng
Software Mentions: 2
Published: over 4 years ago

10.1002/cam4.2642

A network‐based predictive gene expression signature for recurrence risks in stage II colorectal cancer
Cited by: 14
Author(s): Wenjing Yang, Haibo Wang, Wen-da Wang, P Y Bai, Lu Hongxia, Chang‐He Sun, Zishen Liu, Ding‐Kun Guan, Guowang Yang, Gan‐Lin Zhang
Software Mentions: 2
Published: about 5 years ago

10.1177/1176935118782880

A Functional Spatial Analysis Platform for Discovery of Immunological Interactions Predictive of Low-Grade to High-Grade Transition of Pancreatic Intraductal Papillary Mucinous Neoplasms
Cited by: 26
Author(s): Souptik Barua, Luisa M. Solis, Edwin R. Parra, Naohiro Uraoka, Mei Jiang, Huamin Wang, Jaime Rodriguez‐Canales, Ignacio I. Wistuba, Anirban Maitra, Subrata Sen, Arvind Rao
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.gpb.2020.07.005

PM2RA: A Framework for Detecting and Quantifying Relationship Alterations in Microbial Community
Cited by: 4
Author(s): Zhi Li, Kai Mi, Zhenjiang Zech Xu, Qiankun Zhang, Xingyin Liu
Software Mentions: 2
Published: almost 4 years ago

10.1093/gigascience/gix036

Lipidomic profiling reveals distinct differences in plasma lipid composition in healthy, prediabetic, and type 2 diabetic individuals
Cited by: 34
Author(s): Zhong Huang, Chao Fang, Yanqun Fan, Yan Liu, Bo Wen, Huahui Ren, Guixue Hou, Fangming Yang, Hailiang Xie, Zhuye Jie, Ye Peng, Zhiqiang Ye, Jiegen Wu, Jian Zi, Guoqing Zhao, Jiayu Chen, Xiao Bao, Yihe Hu, Yan Gao, Jun Zhang, Huanming Yang, Jian Wang, Lise Madsen, Karsten Kristiansen, Chuanming Ni, Junhua Li, Siqi Liu
Software Mentions: 2
Published: over 7 years ago

10.1093/brain/awz313

RRM adjacent TARDBP mutations disrupt RNA binding and enhance TDP-43 proteinopathy
Cited by: 64
Author(s): Han-Jou Chen, Simon Topp, Ho Sang Hui, Elsa Zacco, Malvika Katarya, Conor McLoughlin, Andrew King, Bradley N. Smith, Claire Troakes, Annalisa Pastore, Christopher E. Shaw
Software Mentions: 2
Published: about 5 years ago

10.1111/gcb.13153

Can carbon emissions from tropical deforestation drop by 50% in 5 years?
Cited by: 102
Author(s): Daniel J. Zarin, Nancy L. Harris, Alessandro Baccini, Dmitry Aksenov, Matthew C. Hansen, Claudia Azevedo‐Ramos, Tasso Azevedo, Belinda Arunarwati Margono, Ane Alencar, Chris Gabris, Adrienne Allegretti, Peter Potapov, Mary Farina, Wayne Walker, Varada S. Shevade, Tatiana V. Loboda, Svetlana Turubanova, Alexandra Tyukavina
Software Mentions: 2
Published: almost 9 years ago

10.1111/gcb.15010

Climate and human water use diminish wetland networks supporting continental waterbird migration
Cited by: 33
Author(s): John Donnelly, Sammy L. King, N. L. Silverman, Daniel P. Collins, Eduardo Carrera-González, Alberto Lafón‐Terrazas, Johnnie N. Moore
Software Mentions: 2
Published: almost 5 years ago

10.1016/j.heliyon.2020.e03311

Gut microbiome structure and adrenocortical activity in dogs with aggressive and phobic behavioral disorders
Cited by: 31
Author(s): Elisabetta Mondo, Monica Barone, Matteo Soverini, Federica D’Amico, Massimo Cocchi, Carmen Adele Petrulli, Michela Mattioli, Giovanna Marliani, Marco Candela, Pier Attilio Accorsi
Software Mentions: 2
Published: almost 5 years ago

10.1016/j.jag.2012.11.007

Mapping the distribution of the main host for plague in a complex landscape in Kazakhstan: An object-based approach using SPOT-5 XS, Landsat 7 ETM+, SRTM and multiple Random Forests
Cited by: 24
Author(s): Liesbeth Wilschut, E.A. Addink, J.A.P. Heesterbeek, V. M. Dubyanskiy, Stephen Davis, Anne Laudisoit, Michael Begon, L. A. Burdelov, Bakyt B. Atshabar, S.M. de Jong
Software Mentions: 2
Published: over 11 years ago

10.1001/jamanetworkopen.2018.6040

Feasibility of Reidentifying Individuals in Large National Physical Activity Data Sets From Which Protected Health Information Has Been Removed With Use of Machine Learning
Cited by: 85
Author(s): Liangyuan Na, Yang Cong, Chi Cheng Lo, Fangyuan Zhao, Yoshimi Fukuoka, Anil Aswani
Software Mentions: 2
Published: almost 6 years ago

10.1001/jamanetworkopen.2019.3721

Development and Validation of Machine Learning Models in Prediction of Remission in Patients With Moderate to Severe Crohn Disease
Cited by: 54
Author(s): Akbar K. Waljee, Beth Wallace, Shirley Cohen‐Mekelburg, Yumu Liu, Boang Liu, Kay Sauder, Ryan W. Stidham, Ji Zhu, Peter Higgins
Software Mentions: 2
Published: over 5 years ago

10.1155/2017/7560807

<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" id="M1"><mml:mrow><mml:mi>K</mml:mi></mml:mrow></mml:math> Important Neighbors: A Novel Approach to Binary Classification in High Dimensional Data
Cited by: 13
Author(s): Hadi Raeisi Shahraki, Saeedeh Pourahmad, Najaf Zare
Software Mentions: 2
Published: almost 8 years ago

10.1172/jci.insight.145823

Determinants of brain swelling in pediatric and adult cerebral malaria
Cited by: 17
Author(s): Praveen K. Sahu, Fergal J. Duffy, Selasi Dankwa, Maria Vishnyakova, Megharay Majhi, Lukas Pirpamer, В. И. Вигдорович, Jabamani Bage, Sameer Maharana, Wilson L. Mandala, Stephen J. Rogerson, Karl B. Seydel, Terrie E. Taylor, Kami Kim, D. Noah Sather, Akshaya Kumar Mohanty, Rashmi Ranjan Mohanty, Anita Mohanty, Rajyabardhan Pattnaik, John D. Aitchison, Angelika Hoffman, Sanjib Mohanty, Joseph D. Smith, Maria Bernabeu, Samuel C. Wassmer
Software Mentions: 2
Published: about 3 years ago

10.1186/1423-0127-16-62

HCV genotyping using statistical classification approach
Cited by: 15
Author(s): Ping Qiu, Xiaoyan Cai, Wei Ding, Qing Zhang, Ellie D. Norris, Jonathan Greene
Software Mentions: 2
Published: almost 16 years ago

10.1111/jcmm.15544

A three‐tiered integrative analysis of transcriptional data reveals the shared pathways related to heart failure from different aetiologies
Cited by: 6
Author(s): Zhenhong Jiang, Ninghong Guo, Kui Hong
Software Mentions: 2
Published: over 4 years ago

10.1186/s13321-017-0256-5

An automated framework for QSAR model building
Cited by: 53
Author(s): Samina Kausar, André O. Falcão
Software Mentions: 2
Published: almost 7 years ago

10.1186/s13062-018-0222-9

Integration of multiple types of genetic markers for neuroblastoma may contribute to improved prediction of the overall survival
Cited by: 8
Author(s): Aneta Polewko-Klim, Wojciech Lesiński, Krzysztof Mnich, Radosław Piliszek, Witold R. Rudnicki
Software Mentions: 2
Published: almost 7 years ago

10.3390/jcm9072215

Plasma Metabolomic Profiling Associates Bicuspid Aortic Valve Disease and Ascending Aortic Dilation with a Decrease in Antioxidant Capacity
Cited by: 5
Author(s): Neus Martínez-Micaelo, Carmen Ligero, Borja Antequera-González, Alexandra Junza, Óscar Yanes, Josep M. Alegret
Software Mentions: 2
Published: over 4 years ago

10.1186/s13040-017-0142-8

EFS: an ensemble feature selection tool implemented as R-package and web-application
Cited by: 64
Author(s): Ursula Neumann, Nikita Genze, Dominik Heider
Software Mentions: 2
Published: over 7 years ago

10.1186/1756-0381-4-16

Interpol: An R package for preprocessing of protein sequences
Cited by: 19
Author(s): Dominik Heider, Daniel Hoffmann
Software Mentions: 2
Published: over 13 years ago

10.1186/1756-0381-7-14

A simple structure-based model for the prediction of HIV-1 co-receptor tropism
Cited by: 27
Author(s): Dominik Heider, J. Nikolaj Dybowski, Christoph Wilms, Daniel Hoffmann
Software Mentions: 2
Published: over 10 years ago

10.1111/1365-2745.13502

Do bark beetle outbreaks amplify or dampen future bark beetle disturbances in Central Europe?
Cited by: 44
Author(s): Andreas Sommerfeld, Werner Rammer, Marco Heurich, Torben Hilmers, Jörg Müller, Rupert Seidl
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.ppat.1002610

Induced Release of a Plant-Defense Volatile ‘Deceptively’ Attracts Insect Vectors to Plants Infected with a Bacterial Pathogen
Cited by: 225
Author(s): Rajinder S. Mann, Jared G. Ali, Sara L. Hermann, Siddharth Tiwari, Kirsten S. Pelz‐Stelinski, Hans T. Alborn, Lukasz L. Stelinski
Software Mentions: 2
Published: over 12 years ago

10.1186/s12889-016-3146-2

Comparing the effect of a leaflet and a movie in preventing tick bites and Lyme disease in The Netherlands
Cited by: 16
Author(s): Desirée Beaujean, Rik Crutzen, Fedor Gassner, Caroline Ameling, Albert Wong, J. E. van Steenbergen, Dirk Ruwaard
Software Mentions: 2
Published: over 8 years ago

10.1126/sciadv.abh3409

SARS-CoV-2 antibody magnitude and detectability are driven by disease severity, timing, and assay
Cited by: 101
Author(s): Michael J. Peluso, Saki Takahashi, Jill Hakim, John D. Kelly, Leonel Torres, Nikita S. Iyer, Keirstinne Turcios, Owen Janson, Sadie E. Munter, Cassandra Thanh, Joanna Donatelli, Charles R. Nixon, Rebecca Hoh, Viva Tai, Emily A. Fehrman, Yanel Hernandez, Matthew A Spinelli, Monica Gandhi, Mary-Ann Palafox, Ana Vallari, Mary A. Rodgers, John Prostko, John Hackett, Lan Trinh, Terri Wrin, Christos J. Petropoulos, Charles Y. Chiu, Philip J. Norris, Clara DiGermanio, Mars Stone, Michael P. Busch, Susanna K. Elledge, Xin Zhou, James A. Wells, Albert Shu, Theodore W. Kurtz, John E. Pak, Wesley Wu, Peter D. Burbelo, Jeffrey I. Cohen, Rachel L. Rutishauser, Jeffrey N. Martin, Steven G. Deeks, Timothy J. Henrich, Isabel Rodríguez-Barraquer, Bryan Greenhouse
Software Mentions: 2
Published: over 3 years ago

10.1128/AEM.00481-18

Molecular Epidemiology of Shiga Toxin-Producing Escherichia coli (STEC) on New Zealand Dairy Farms: Application of a Culture-Independent Assay and Whole-Genome Sequencing
Cited by: 28
Author(s): A. Springer Browne, Anne C. Midwinter, Helen Withers, Adrian L. Cookson, Patrick J. Biggs, Jonathan Marshall, Jackie Benschop, S.C. Hathaway, N. A. Haack, Rukhshana N. Akhter, Nigel P. French
Software Mentions: 2
Published: over 6 years ago

10.1038/s41597-020-00646-4

Mapping twenty years of corn and soybean across the US Midwest using the Landsat archive
Cited by: 46
Author(s): Sherrie Wang, Stefania Di Tommaso, Jillian M. Deines, David B. Lobell
Software Mentions: 2
Published: about 4 years ago

10.1038/srep19454

A simulation-based breeding design that uses whole-genome prediction in tomato
Cited by: 52
Author(s): Eiji Yamamoto, Hiroshi Matsunaga, Akio Onogi, Hiromi Kajiya‐Kanegae, Mai F. Minamikawa, Akira Suzuki, Kenta Shirasawa, Hideki Hirakawa, Toshiro Nunome, Haruhisa Yamaguchi, Koji Miyatake, Akio Ohyama, Hiroyoshi Iwata, Hiroyuki Fukuoka
Software Mentions: 2
Published: almost 9 years ago

10.1038/srep22806

Bacterial associations reveal spatial population dynamics in Anopheles gambiae mosquitoes
Cited by: 94
Author(s): Moritz Buck, Louise K. J. Nilsson, Carl Brunius, Roch K. Dabiré, Richard Hopkins, Olle Terenius
Software Mentions: 2
Published: over 8 years ago

10.1038/srep24883

Genotypic Prediction of Co-receptor Tropism of HIV-1 Subtypes A and C
Cited by: 27
Author(s): Mona Riemenschneider, Kieran Cashin, Bettina Budeus, Saleta Sierra, Elham Shirvani-Dastgerdi, Saeed Bayanolhagh, Rolf Kaiser, Paul R Gorry, Dominik Heider
Software Mentions: 2
Published: over 8 years ago

10.1186/s12888-015-0447-4

Predicting general criminal recidivism in mentally disordered offenders using a random forest approach
Cited by: 40
Author(s): Marlon O. Pflueger, Irina Franke, Marc Graf, Henning Hachtel
Software Mentions: 2
Published: over 9 years ago

10.1038/srep37324

YY1 binding association with sex-biased transcription revealed through X-linked transcript levels and allelic binding analyses
Cited by: 29
Author(s): Chih-Yu Chen, Wenqiang Shi, Bradley P. Balaton, Allison Matthews, Yifeng Li, David J. Arenillas, Anthony Mathelier, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Yoshihide Hayashizaki, Piero Carninci, Alistair R.R. Forrest, Carolyn J. Brown, Wyeth W. Wasserman
Software Mentions: 2
Published: about 8 years ago

10.1186/s12887-015-0471-z

Familial risk and protective factors in alcohol intoxicated adolescents: psychometric evaluation of the family domain of the Communities That Care Youth Survey (CTC) and a new short version of the Childhood Trauma Questionnaire (CTQ)
Cited by: 9
Author(s): Heidi Kuttler, Hanna Schwendemann, Eva Maria Bitzer
Software Mentions: 2
Published: about 9 years ago

10.1038/srep44182

Stress during pregnancy alters temporal and spatial dynamics of the maternal and offspring microbiome in a sex-specific manner
Cited by: 156
Author(s): Eldin Jašarević, Christopher D. Howard, Ana M. Misic, Daniel P. Beiting, Tracy L. Bale
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2415-15-10

Combining macula clinical signs and patient characteristics for age-related macular degeneration diagnosis: a machine learning approach
Cited by: 35
Author(s): Paolo Fraccaro, Massimo Nicolò, Monica Bonetto, Mauro Giacomini, Peter Weller, Carlo Enrico Traverso, Mattia Prosperi, Dympna O’Sullivan
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12866-019-1425-7

Letrozole treatment of adult female mice results in a similar reproductive phenotype but distinct changes in metabolism and the gut microbiome compared to pubertal mice
Cited by: 31
Author(s): Pedro J. Torres, Danalea V. Skarra, Brian Ho, Lillian Sau, Arya R. Anvar, Scott T. Kelley, Varykina G. Thackray
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-04871-7

Post-glacial biogeography of trembling aspen inferred from habitat models and genetic variance in quantitative traits
Cited by: 12
Author(s): Chen Ding, Stefan G. Schreiber, David R. Roberts, Andreas Hamann, Jean Sébastien Brouard
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-05001-z

MiR-320a as a Potential Novel Circulating Biomarker of Arrhythmogenic CardioMyopathy
Cited by: 36
Author(s): Elena Sommariva, Yuri D’Alessandra, Floriana Maria Farina, Michela Casella, Fabio Cattaneo, Valentina Catto, Mattia Chiesa, Ilaria Stadiotti, Silvia Brambilla, Antonio Dello Russo, Corrado Carbucicchio, Giulia Vettor, Daniela Riggio, Maria Teresa Sandri, Andrea Barbuti, Gianluca Vernillo, Manuela Muratori, Matteo Dal Ferro, Gianfranco Sinagra, Silvia Moimas, Mauro Giacca, Gualtiero I. Colombo, Giulio Pompilio, Claudio Tondo
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-08111-w

Varying sensitivity of mountainous streamwater base-flow $${\bf{N}}{{\bf{O}}}_{{\bf{3}}}^{-}$$concentrations to N deposition in the northern suburbs of Tokyo
Cited by: 20
Author(s): Kazuya Nishina, Mirai Watanabe, Masami Kanao Koshikawa, Takejiro Takamatsu, Yu Morino, Tatsuya Nagashima, Kunika Soma, Seiji Hayashi
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-07729-0

The chemical signatures underlying host plant discrimination by aphids
Cited by: 21
Author(s): David P. Hopkins, Duncan D. Cameron, Roger K. Butlin
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-11975-7

Differential Serum Cytokine Profiles in Patients with Chronic Hepatitis B, C, and Hepatocellular Carcinoma
Cited by: 37
Author(s): Jacqueline Estevez, Vincent Chen, Ondřej Podlaha, Biao Li, An K. Le, Philip Vutien, Ellen T. Chang, Yael Rosenberg-Hasson, Zhaoshi Jiang, Stefan Pflanz, Dongliang Ge, Anuj Gaggar, Mindie H. Nguyen
Software Mentions: 2
Published: about 7 years ago

10.1186/s12911-015-0203-1

Opinion versus practice regarding the use of rehabilitation services in home care: an investigation using machine learning algorithms
Cited by: 12
Author(s): Lu-Guang Cheng, Mu Zhu, Jeffrey W. Poss, John P. Hirdes, Christine Glenny, Paul Stolee
Software Mentions: 2
Published: about 9 years ago

10.1186/s12911-017-0522-5

Enhancement of hepatitis virus immunoassay outcome predictions in imbalanced routine pathology data by data balancing and feature selection before the application of support vector machines
Cited by: 15
Author(s): Alice Richardson, Brett A. Lidbury
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-23679-7

Response of Aquatic Bacterial Communities to Hydraulic Fracturing in Northwestern Pennsylvania: A Five-Year Study
Cited by: 21
Author(s): Nikea Ulrich, Veronica Kirchner, Rebecca Drucker, Justin Wright, Christopher J. McLimans, Terry C. Hazen, Maria Fernanda Campa, Christopher J. Grant, Regina Lamendella
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-24071-1

Distinguishing butchery cut marks from crocodile bite marks through machine learning methods
Cited by: 40
Author(s): Manuel Domı́nguez-Rodrigo, Enrique Baquedano
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-27569-w

Highly accurate model for prediction of lung nodule malignancy with CT scans
Cited by: 131
Author(s): Jason Causey, Junyu Zhang, Shiqian Ma, Bo Jiang, Jake Qualls, David G. Politte, Fred Prior, Shuzhong Zhang, Xiuzhen Huang
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-28000-0

Assessment of the effect of climate changes in the Late Pleistocene and Holocene on niche conservatism of an arvicolid specialist
Cited by: 8
Author(s): Elena Castellanos-Frías, Nuria Garcı́a, Emílio Virgós
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-28811-1

Marine forests of the Mediterranean-Atlantic Cystoseira tamariscifolia complex show a southern Iberian genetic hotspot and no reproductive isolation in parapatry
Cited by: 26
Author(s): Ricardo Bermejo, Rosa M. Chefaoui, Aschwin H. Engelen, Roberto Buonomo, João Neiva, Joana F. Costa, Gareth A. Pearson, Núria Marbà, Carlos M. Duarte, Laura Airoldi, Ignacio Hernández, Michael D. Guiry, Ester A. Serrão
Software Mentions: 2
Published: over 6 years ago

10.2196/jmir.7486

Subregional Nowcasts of Seasonal Influenza Using Search Trends
Cited by: 36
Author(s): Sasikiran Kandula, Daniel Hsu, Jeffrey Shaman
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-018-31543-x

Detection of high-risk carbapenem-resistant Klebsiella pneumoniae and Enterobacter cloacae isolates using volatile molecular profiles
Cited by: 15
Author(s): Christiaan A. Rees, Mavra Nasir, Agnieszka Smolinska, Alexa E. Lewis, Katherine R. Kane, Shannon Kossmann, Orkan Sezer, Paola C. Zucchi, Yohei Doi, Elizabeth B. Hirsch, Jane E. Hill
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-018-33786-0

Novel detection of provenance in the illegal wildlife trade using elemental data
Cited by: 15
Author(s): Kate J. Brandis, Phoebe Meagher, Lydia Tong, Michelle E. Shaw, Debashish Mazumder, Patricia Gadd, Daniel Ramp
Software Mentions: 2
Published: about 6 years ago

10.18632/oncotarget.15136

<i>PIGN</i> gene expression aberration is associated with genomic instability and leukemic progression in acute myeloid leukemia with myelodysplastic features
Cited by: 9
Author(s): Emmanuel K. Teye, Abigail Sido, Ping Xin, Niklas Finnberg, Prashanth Gokare, Yuka Imamura Kawasawa, Anna C. Salzberg, Sara Shimko, Michael G. Bayerl, W. Christopher Ehmann, David F. Claxton, Witold B. Rybka, Joseph J. Drabick, Hong Gang Wang, Thomas Abraham, Wafik S. El‐Deiry, Robert A. Brodsky, Raymond J. Hohl, Jeffrey J. Pu
Software Mentions: 2
Published: almost 8 years ago

10.3390/ani10050771

Possibility of Autonomous Estimation of Shiba Goat’s Estrus and Non-Estrus Behavior by Machine Learning Methods
Cited by: 0
Author(s): Toshiya Arakawa
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-019-53998-2

Marine fish traits follow fast-slow continuum across oceans
Cited by: 26
Author(s): Esther Beukhof, Romain Frelat, Laurène Pécuchet, Aurore Maureaud, Tim Spaanheden Dencker, Jón Sólmundsson, Antonio Punzón, Raul Primicerio, Manuel Hidalgo, Christian Möllmann, Martin Lindegren
Software Mentions: 2
Published: almost 5 years ago

10.3390/ani8010012

Predicting Lameness in Sheep Activity Using Tri-Axial Acceleration Signals
Cited by: 53
Author(s): Jamie Barwick, David Lamb, Robin Dobos, Derek Schneider, Mitchell Welch, Mark Trotter
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-020-59535-w

A Microbial Signature Identifies Advanced Fibrosis in Patients with Chronic Liver Disease Mainly Due to NAFLD
Cited by: 34
Author(s): Tien S. Dong, William Katzka, Venu Lagishetty, Kayti Luu, Meg Hauer, Joseph R. Pisegna, Jonathan P. Jacobs
Software Mentions: 2
Published: almost 5 years ago

10.18632/oncotarget.24732

Identification of a serum biomarker panel for the differential diagnosis of cholangiocarcinoma and primary sclerosing cholangitis
Cited by: 21
Author(s): Joy Cuenco, Natascha Wehnert, Oleg Blyuss, А.В. Казарян, Harry J. Whitwell, Usha Menon, Anne Dawnay, Michael P. Manns, Stephen P. Pereira, John F. Timms
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-64980-8

A novel predicted model for hypertension based on a large cross-sectional study
Cited by: 10
Author(s): Zhigang Ren, Benchen Rao, Siqi Xie, Ang Li, Lijun Wang, Guangying Cui, Tiantian Li, Hang Yan, Zujiang Yu, Shuzhe Ding
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-68167-z

Multi-scale habitat modelling and predicting change in the distribution of tiger and leopard using random forest algorithm
Cited by: 38
Author(s): Tahir Ali Rather, Sharad Kumar, Jamal A. Khan
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-69790-6

Functional fine-mapping of noncoding risk variants in amyotrophic lateral sclerosis utilizing convolutional neural network
Cited by: 11
Author(s): Ali Yousefian-Jazi, Min Kyung Sung, Taeyeop Lee, Yoon Ho Hong, Jung Kyoon Choi, Jinwook Choi
Software Mentions: 2
Published: over 4 years ago

10.1186/s12864-020-6555-7

Genome-wide association studies of Shigella spp. and Enteroinvasive Escherichia coli isolates demonstrate an absence of genetic markers for prediction of disease severity
Cited by: 10
Author(s): Amber C. A. Hendriks, Frans A.G. Reubsaet, A.M.D. Kooistra-Smid, John W. A. Rossen, Bas E. Dutilh, Aldert Zomer, Maaike van den Beld
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12864-017-3565-1

Gene expression profiles associated with cigarette smoking and moist snuff consumption
Cited by: 30
Author(s): Subhashini Arimilli, Behrouz Madahian, Peter Chen, Kristin M. Marano, G.L. Prasad
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-020-76759-y

GMStool: GWAS-based marker selection tool for genomic prediction from genomic data
Cited by: 16
Author(s): Seongmun Jeong, Jaeyoon Kim, Namshin Kim
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-020-77059-1

Agriculture increases the bioavailability of silicon, a beneficial element for crop, in temperate soils
Cited by: 23
Author(s): Manon Caubet, Sophie Cornu, Nicolas Saby, Jean‐Dominique Meunier
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-020-76873-x

Deeper waters are changing less consistently than surface waters in a global analysis of 102 lakes
Cited by: 51
Author(s): Rachel M. Pilla, Craig E. Williamson, Б. В. Адамович, Rita Adrian, Orlane Anneville, Sudeep Chandra, William Colom-Montero, Shawn P. Devlin, Margaret Dix, Martin T. Dokulil, Evelyn E. Gaiser, Scott F. Girdner, K. David Hambright, David P. Hamilton, Karl E. Havens, Dag O. Hessen, Scott N. Higgins, Timo Huttula, Hannu Huuskonen, Peter D. F. Isles, Klaus Joehnk, Ian D. Jones, Wendel Keller, Lesley B. Knoll, Johanna Korhonen, Benjamin M. Kraemer, Peter R. Leavitt, Fabio Lepori, Martin Luger, Stephen C. Maberly, John M. Mélack, Stephanie J. Melles, Dörthe C. Müller-Navarra, Don Pierson, Helen V. Pislegina, Pierre Denis Plisnier, David C. Richardson, Alon Rimmer, Michela Rogora, James A. Rusak, Steven Sadro, Nico Salmaso, Jasmine E. Saros, Émilie Saulnier‐Talbot, Daniel E. Schindler, Martin Schmid, Svetlana V. Shimaraeva, Eugene A. Silow, Lewis Sitoki, Rubén Sommaruga, Dietmar Straile, Kristin E. Strock, Wim Thiery, Maxim A. Timofeyev, Piet Verburg, Rolf D. Vinebrooke, Gesa A. Weyhenmeyer, Egor Zadereev
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-020-78155-y

Classification of invasive bloodstream infections and Plasmodium falciparum malaria using autoantibodies as biomarkers
Cited by: 1
Author(s): Ralf Krumkamp, Nicole S. Struck, Eva Lorenz, Marlow Zimmermann, Kennedy Gyau Boahen, Nimako Sarpong, Ellis Owusu‐Dabo, Gi Deok Pak, Hyon Jin Jeon, Florian Marks, Thomas Jacobs, Jürgen May, Daniel Eibach
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-020-78961-4

Identification of metabolic markers predictive of prediabetes in a Korean population
Cited by: 4
Author(s): Heun‐Sik Lee, Tae Joo Park, Jeong‐Min Kim, Jun Ho Yun, Ho‐Yeong Yu, Yeon‐Jung Kim, Bong-Jo Kim
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12864-020-07109-5

A holistic view of mouse enhancer architectures reveals analogous pleiotropic effects and correlation with human disease
Cited by: 1
Author(s): Siddharth Sethi, Ilya E. Vorontsov, Ivan V. Kulakovskiy, Simon Greenaway, John A. Williams, Vsevolod J. Makeev, Steve Brown, Michelle Simon, Ann‐Marie Mallon
Software Mentions: 2
Published: about 4 years ago

10.1186/1471-2164-15-654

Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions
Cited by: 24
Author(s): Bas E. Dutilh, Cristiane C. Thompson, Ana Carolina Paulo Vicente, Michel Abanto, Clarence Lee, Genivaldo G. Z. Silva, Robert Schmieder, Bruno de Bezerril Andrade, Luciane A. Chimetto, Daniel A. Cuevas, Daniel Garza, Iruka N. Okeke, Aaron O. Aboderin, Jessica Spangler, Tristen Ross, Elizabeth A. Dinsdale, Fabiano L. Thompson, Timothy T. Harkins, Robert A. Edwards
Software Mentions: 2
Published: over 10 years ago

10.1186/s12863-021-00994-z

Development and validation of a 1 K sika deer (Cervus nippon) SNP Chip
Cited by: 4
Author(s): Huanhuan Fan, Tianjiao Wang, Li Yang, Huitao Liu, Yushen Dong, Ranran Zhang, Hongliang Wang, Liyuan Shang, Xiumei Xing
Software Mentions: 2
Published: about 3 years ago

10.1186/s12863-018-0710-z

funbarRF: DNA barcode-based fungal species prediction using multiclass Random Forest supervised learning model
Cited by: 14
Author(s): Prabina Kumar Meher, Tanmaya Kumar Sahu, Shachi Gahoi, Rukam S. Tomar, Atmakuri Ramakrishna Rao
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-97369-2

ROV assessment of mesophotic fish and associated habitats across the continental shelf of the Amathole region
Cited by: 2
Author(s): Rio Button, D. Stott Parker, Vivienne Coetzee, Toufiek Samaai, Ryan M. Palmer, Kerry Sink, Sven E. Kerwath
Software Mentions: 2
Published: about 3 years ago

10.1186/s12898-017-0135-y

What makes a successful species? Traits facilitating survival in altered tropical forests
Cited by: 5
Author(s): Mareike Hirschfeld, Mark‐Oliver Rödel
Software Mentions: 2
Published: over 7 years ago

10.3390/s151026726

Comparison of Different Classification Methods for Analyzing Electronic Nose Data to Characterize Sesame Oils and Blends
Cited by: 27
Author(s): Xinghua Shao, Hui Li, Nan Wang, Qiang Zhang
Software Mentions: 2
Published: about 9 years ago

10.3390/s16111918

Investigating the Utility of Oblique Tree-Based Ensembles for the Classification of Hyperspectral Data
Cited by: 15
Author(s): Nitesh Poona, Adriaan van Niekerk, Riyad Ismail
Software Mentions: 2
Published: about 8 years ago

10.3390/s17071679

Classification of Alzheimer’s Patients through Ubiquitous Computing
Cited by: 7
Author(s): Alicia Nieto-Reyes, Rafael Duque, José Luis Montaña, Carmen Lage
Software Mentions: 2
Published: over 7 years ago

10.3390/s18051428

Implementation of Cyber-Physical Production Systems for Quality Prediction and Operation Control in Metal Casting
Cited by: 93
Author(s): JuneHyuck Lee, Sang Do Noh, Hyun-Jung Kim, Yong-Shin Kang
Software Mentions: 2
Published: over 6 years ago

10.1186/s12898-020-00323-5

Floral traits are associated with the quality but not quantity of heterospecific stigmatic pollen loads
Cited by: 6
Author(s): Manon A. Peuker, Hannah Burger, Sabrina Krausch, Ulrich Neumüller, Manfred Ayasse, Jonas Kuppler
Software Mentions: 2
Published: about 4 years ago

10.3390/s20061692

A Systematic Methodology to Evaluate Prediction Models for Driving Style Classification
Cited by: 28
Author(s): Iván Silva, José Eugenio Naranjo
Software Mentions: 2
Published: over 4 years ago

10.3390/s20143976

Machine Learning to Quantify Physical Activity in Children with Cerebral Palsy: Comparison of Group, Group-Personalized, and Fully-Personalized Activity Classification Models
Cited by: 17
Author(s): Matthew Ahmadi, Margaret E. O’Neil, Emmah Baque, Roslyn N. Boyd, Stewart G. Trost
Software Mentions: 2
Published: over 4 years ago

10.3390/s20236737

Foot Strike Angle Prediction and Pattern Classification Using LoadsolTM Wearable Sensors: A Comparison of Machine Learning Techniques
Cited by: 8
Author(s): Stephanie R. Moore, Christina Kranzinger, Julian Fritz, Thomas Stöggl, Josef Kröll, Hermann Schwameder
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12915-015-0197-2

Sperm competition risk drives plasticity in seminal fluid composition
Cited by: 66
Author(s): Steven A. Ramm, Dominic A. Edward, Amy J. Claydon, Dean E. Hammond, Philip Brownridge, Jane L. Hurst, Robert J. Beynon, Paula Stockley
Software Mentions: 2
Published: about 9 years ago

10.1128/mBio.01777-21

Signatures of COVID-19 Severity and Immune Response in the Respiratory Tract Microbiome
Cited by: 66
Author(s): Carter Merenstein, Guanxiang Liang, Samantha A. Whiteside, Ana G Cobián-Güemes, Madeline S Merlino, Louis J. Taylor, Abigail Glascock, Kyle Bittinger, Ceylan Tanes, Jevon Graham-Wooten, Layla A. Khatib, Ayannah S. Fitzgerald, Shantan Reddy, Amy E. Baxter, Josephine R. Giles, Derek A. Oldridge, Nuala J. Meyer, E. John Wherry, John E. McGinniss, Frederic D. Bushman, Ronald G. Collman
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pone.0117380

PON-P2: Prediction Method for Fast and Reliable Identification of Harmful Variants
Cited by: 169
Author(s): Abhishek Niroula, Siddhaling Urolagin, Mauno Vihinen
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0115745

Enhancing In Silico Protein-Based Vaccine Discovery for Eukaryotic Pathogens Using Predicted Peptide-MHC Binding and Peptide Conservation Scores
Cited by: 23
Author(s): Stephen J. Goodswen, Paul J. Kennedy, John Ellis
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0114522

Inferring Behavioral States of Grazing Livestock from High-Frequency Position Data Alone
Cited by: 29
Author(s): Hermel Homburger, Manuel K. Schneider, Sandra Hilfiker, Andreas Lüscher
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0059688

SNP-SNP Interaction Network in Angiogenesis Genes Associated with Prostate Cancer Aggressiveness
Cited by: 40
Author(s): Hui‐Yi Lin, Ernest K. Amankwah, Tung-Sung Tseng, Xiaotao Qu, Dung Tsa Chen, Jong Y. Park
Software Mentions: 2
Published: over 11 years ago

10.1128/mSphereDirect.00698-18

The Gut Microbiota Is Associated with Clearance of Clostridium difficile Infection Independent of Adaptive Immunity
Cited by: 26
Author(s): Jhansi L. Leslie, Kimberly C. Vendrov, Matthew L. Jenior, Vincent B. Young
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0012334

Identification of Methylated Genes Associated with Aggressive Bladder Cancer
Cited by: 81
Author(s): Carmen J. Marsit, E. Andrés Houseman, Brock C. Christensen, Luc Gagne, Margaret Wrensch, Heather H. Nelson, Joseph L. Wiemels, Shichun Zheng, John K. Wiencke, Angeline S. Andrew, Alan R. Schned, Margaret R. Karagas, Karl T. Kelsey
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0056564

Metabolic Signatures of Extreme Longevity in Northern Italian Centenarians Reveal a Complex Remodeling of Lipids, Amino Acids, and Gut Microbiota Metabolism
Cited by: 181
Author(s): Sebastiano Collino, Ivan Montoliu, François‐Pierre J. Martin, Max Scherer, Daniela Mari, Stefano Salvioli, Laura Bucci, Rita Ostan, Daniela Monti, Elena Biagi, Patrizia Brigidi, Claudio Franceschi, Serge Rezzi
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0088761

The Social Nestwork: Tree Structure Determines Nest Placement in Kenyan Weaverbird Colonies
Cited by: 7
Author(s): María Ángela Echeverry‐Galvis, Jennifer K. Peterson, Rajmonda Sulo-Caceres
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0236011

Prediction of five-year mortality after COPD diagnosis using primary care records
Cited by: 6
Author(s): Steven Kiddle, Hannah Whittaker, Shaun R. Seaman, Jennifer K Quint
Software Mentions: 2
Published: over 4 years ago

10.1186/s12859-020-3442-9

Machine learning prediction of oncology drug targets based on protein and network properties
Cited by: 30
Author(s): Zoltán Dezső, Michele Ceccarelli
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0151131

A Comparative Assessment of the Influences of Human Impacts on Soil Cd Concentrations Based on Stepwise Linear Regression, Classification and Regression Tree, and Random Forest Models
Cited by: 30
Author(s): Lefeng Qiu, Kai Wang, Weiding Long, Ke Wang, Wei Hu, Gabriel S. Amable
Software Mentions: 2
Published: over 8 years ago

Projects: cran: randomForest

Papers Mentioning randomForest 1,447