cran: randomForest | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0237063

Estimating small-area population density in Sri Lanka using surveys and Geo-spatial data
Cited by: 10
Author(s): Ryan Engstrom, David Newhouse, V. Soundararajan
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0184631

Unrevealing the leaf frogs Cerrado diversity: A new species of Pithecopus (Anura, Arboranae, Phyllomedusidae) from the Mato Grosso state, Brazil
Cited by: 12
Author(s): Isabelle Aquemi Haga, Felipe Silva de Andrade, Daniel Pacheco Bruschi, Shirlei Maria Recco‐Pimentel, Ariovaldo Antônio Giaretta
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0207624

Estimation of paddy rice leaf area index using machine learning methods based on hyperspectral data from multi-year experiments
Cited by: 31
Author(s): Li Wang, Qingrui Chang, Jing Yang, Xiaohua Zhang, Fenling Li
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0172663

Mapping the montane cloud forest of Taiwan using 12 year MODIS-derived ground fog frequency data
Cited by: 28
Author(s): Hans Martin Schulz, Ching‐Feng Li, Boris Thies, Shih‐Chieh Chang, Jörg Bendix
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0231995

Applying machine learning in motor activity time series of depressed bipolar and unipolar patients compared to healthy controls
Cited by: 35
Author(s): Petter Jakobsen, Enrique Garcia-Ceja, Michael Riegler, Lena Antonsen Stabell, Tine Nordgreen, Jim Tørresen, Ole Bernt Fasmer, Ketil J. Oedegaard
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0194725

Extending the paleontology–biogeography reciprocity with SDMs: Exploring models and data in reducing fossil taxonomic uncertainty
Cited by: 9
Author(s): Anderson A. Eduardo, P. Martínez, Sidney F. Gouveia, Franciely da Silva Santos, Wilcilene Santos de Aragão, Jennifer Morales‐Barbero, Leonardo Kerber, Alexandre Liparini
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2105-15-S16-S16

Supervised prediction of drug-induced nephrotoxicity based on interleukin-6 and -8 expression levels
Cited by: 32
Author(s): Ran Su, Yao Li, Daniele Zink, Lit‐Hsin Loo
Software Mentions: 2
Published: almost 12 years ago

10.1002/ece3.2661

Abundance distributions for tree species in Great Britain: A two-stage approach to modeling abundance using species distribution modeling and random forest
Cited by: 33
Author(s): Louise Hill, Andy Héctor, G. E. Hemery, Simon M. Smart, Matteo Tanadini, Nick Brown
Software Mentions: 2
Published: over 9 years ago

10.1002/ece3.2326

Factors influencing the survival of outmigrating juvenile salmonids through multiple dam passages: an individual‐based approach
Cited by: 4
Author(s): Timothy Elder, Christa M. Woodley, Mark A. Weiland, Angela L. Strecker
Software Mentions: 2
Published: about 10 years ago

10.1002/ece3.6097

Geographic patterns of insect diversity across China's nature reserves: The roles of niche conservatism and range overlapping
Cited by: 8
Author(s): Yueming Lyu, Xiangping Wang, Jing Luo
Software Mentions: 2
Published: over 6 years ago

10.1002/ece3.4621

Bush encroachment dynamics and rangeland management implications in southern Ethiopia
Cited by: 18
Author(s): Chuan Liao, Patrick E. Clark, Stephen D. DeGloria
Software Mentions: 2
Published: almost 8 years ago

10.1002/ece3.2544

Predicted rarity-weighted richness, a new tool to prioritize sites for species representation
Cited by: 13
Author(s): Fábio Suzart de Albuquerque, Paul Beier
Software Mentions: 2
Published: almost 10 years ago

10.1002/ece3.2696

Species distribution models predict temporal but not spatial variation in forest growth
Cited by: 31
Author(s): Ernst van der Maaten, Andreas Hamann, Marieke van der Maaten‐Theunissen, A.R. Bergsma, G.M. Hengeveld, R.J.A. van Lammeren, Frits Mohren, Gert‐Jan Nabuurs, R.L. Terhürne, Frank J. Sterck
Software Mentions: 2
Published: over 9 years ago

10.1002/ece3.6398

Machine‐learning‐based detection of adaptive divergence of the stream mayfly Ephemera strigata populations
Cited by: 2
Author(s): Bin Li, Sakiko Yaegashi, Thaddeus M. Carvajal, Maribet Gamboa, Ming‐Chih Chiu, Zongming Ren, Kozo Watanabe
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pgen.1008146

Identification and validation of genetic variants predictive of gait in standardbred horses
Cited by: 11
Author(s): Annette M. McCoy, Samantha K. Beeson, Carl-Johan Rubin, Leif Andersson, Paul Caputo, Sigrid Lykkjen, Alison Moore, Richard J. Piercy, James R. Mickelson, Molly E. McCue
Software Mentions: 2
Published: over 7 years ago

10.1080/22221751.2020.1858176

Blood transcriptomics to characterize key biological pathways and identify biomarkers for predicting mortality in melioidosis
Cited by: 9
Author(s): Thatcha Yimthin, Jacqueline M. Cliff, Rungnapa Phunpang, Peeraya Ekchariyawat, Taniya Kaewarpai, Ji-Sook Lee, Clare Eckold, Megan Andrada, Ekkachai Thiansukhon, Kittisak Tanwisaid, Somchai Chuananont, Chumpol Morakot, Narongchai Sangsa, Wirayut Silakun, Sunee Chayangsu, Noppol Buasi, Nicholas P. J. Day, Ganjana Lertmemongkolchai, Wasun Chantratita, T. Eoin West, Narisara Chantratita
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pcbi.1008191

Classification of estrogenic compounds by coupling high content analysis and machine learning algorithms
Cited by: 11
Author(s): Rabindra Nath Mukherjee, Burcu Beykal, Adam T. Szafran, Melis Onel, Fabio Stossi, Maureen G. Mancini, Dillon Lloyd, Fred A. Wright, Lan Zhou, Michael A. Mancini, Efstratios N. Pistikopoulos
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pcbi.1007895

A systematic machine learning and data type comparison yields metagenomic predictors of infant age, sex, breastfeeding, antibiotic usage, country of origin, and delivery type
Cited by: 18
Author(s): Le Goallec A, Braden T. Tierney, Jacob M. Luber, Evan M. Cofer, Aleksandar D. Kostic, Chirag Patel
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pcbi.1004801

Early Transcriptome Signatures from Immunized Mouse Dendritic Cells Predict Late Vaccine-Induced T-Cell Responses
Cited by: 7
Author(s): Nicolas Dérian, Bertrand Bellier, Hang Phuong Pham, Eliza Tsitoura, Dorothea Kazazi, Christophe Huret, Penelope Mavromara, David Klatzmann, Adrien Six
Software Mentions: 2
Published: over 10 years ago

10.1186/s40793-019-0349-z

Performance evaluation of a new custom, multi-component DNA isolation method optimized for use in shotgun metagenomic sequencing-based aerosol microbiome research
Cited by: 25
Author(s): Kari Oline Bøifot, Jostein Gohli, Line Victoria Moen, Marius Dybwad
Software Mentions: 2
Published: over 6 years ago

10.1007/s10661-019-7317-3

Characterizing nonnative plants in wetlands across the conterminous United States
Cited by: 10
Author(s): Teresa K. Magee, Karen A. Blocksom, Alan T. Herlihy, Amanda M. Nahlik
Software Mentions: 2
Published: over 7 years ago

10.1186/s12859-019-3014-z

RF_Purify: a novel tool for comprehensive analysis of tumor-purity in methylation array data based on random forest regression
Cited by: 31
Author(s): Pascal Johann, Natalie Jäger, Stefan M. Pfister, Martin Sill
Software Mentions: 2
Published: about 7 years ago

10.1192/j.eurpsy.2021.2220

Predicting involuntary hospitalization in psychiatry: A machine learning investigation
Cited by: 7
Author(s): Benedetta Silva, Mehdi Gholam, Philippe Golay, Charles Bonsack, Stéphane Morandi
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2105-9-234

Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces
Cited by: 28
Author(s): Andrew J. Bordner, Andrey Gorin
Software Mentions: 2
Published: over 18 years ago

10.1371/journal.pcbi.1001008

Deciphering the Code for Retroviral Integration Target Site Selection
Cited by: 44
Author(s): Federico Santoni, Oliver Hartley, Jeremy Luban
Software Mentions: 2
Published: almost 16 years ago

10.1186/s40854-020-00217-x

Forecasting and trading cryptocurrencies with machine learning under changing market conditions
Cited by: 69
Author(s): Hélder Sebastião, Pedro Godinho
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pcbi.1004418

Contribution of Sequence Motif, Chromatin State, and DNA Structure Features to Predictive Models of Transcription Factor Binding in Yeast
Cited by: 27
Author(s): Zing Tsung-Yeh Tsai, Shin-Han Shiu, Huai Kuang Tsai
Software Mentions: 2
Published: about 11 years ago

10.2196/26527

“Thought I’d Share First” and Other Conspiracy Theory Tweets from the COVID-19 Infodemic: Exploratory Study
Cited by: 46
Author(s): Dax Gerts, Courtney D Shelley, Nidhi Parikh, Travis Pitts, Chrysm Watson Ross, Geoffrey Fairchild, Nidia Yadria Vaquera Chavez, Ashlynn R. Daughton
Software Mentions: 2
Published: over 5 years ago

10.3389/frai.2021.672050

Reliable and Interpretable Mortality Prediction With Strong Foresight in COVID-19 Patients: An International Study From China and Germany
Cited by: 3
Author(s): Tao Bai, Xue Zhu, Xiang Zhou, Denise Grathwohl, Pengshuo Yang, Yuguo Zha, Jing Yu, H. Gin Chong, Qingyang Yu, Nora Isberner, Dongke Wang, Lei Zhang, K. Martin Kortüm, Jun Song, Leo Rasche, Hermann Einsele, Kang Ning, Xiaohua Hou
Software Mentions: 2
Published: about 5 years ago

10.3389/frai.2021.648543

Considering Performance in the Automated and Manual Coding of Sociolinguistic Variables: Lessons From Variable (ING)
Cited by: 5
Author(s): Tyler Kendall, Charlotte Vaughn, Charlie Farrington, Kaylynn Gunter, Jaidan McLean, Chloe Tacata, Shelby Arnson
Software Mentions: 2
Published: over 5 years ago

10.3389/fbioe.2021.673691

Alterations of Gut Microbiota in Patients With Intestinal Tuberculosis That Different From Crohn’s Disease
Cited by: 6
Author(s): Cong He, Huan Wang, Yu Chen, Chao Peng, Xu Shu, Wei Liao, Zhenhua Zhu
Software Mentions: 2
Published: about 5 years ago

10.14814/phy2.14208

Quantification of image texture in X‐ray phase‐contrast‐enhanced projection images of in vivo mouse lungs observed at varied inflation pressures
Cited by: 2
Author(s): Frank J. Brooks, Sean P. Gunsten, Sunil K. Vasireddi, Steven L. Brody, Mark A. Anastasio
Software Mentions: 2
Published: about 7 years ago

10.1002/ps.4718

Spectral separability and mapping potential of cassava leaf damage symptoms caused by whiteflies (Bemisia tabaci )
Cited by: 2
Author(s): Neil Sims, Paul De Barro, Glenn Newnham, Andrew Kalyebi, Sarina Macfadyen, Tim J. Malthus
Software Mentions: 2
Published: almost 9 years ago

10.3389/fcimb.2019.00028

Infectious Complications Are Associated With Alterations in the Gut Microbiome in Pediatric Patients With Acute Lymphoblastic Leukemia
Cited by: 43
Author(s): Jacob T. Nearing, Jessica Connors, Scott Whitehouse, Johan Van Limbergen, Tamara MacDonald, Ketan Kulkarni, Morgan G. I. Langille
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.3320

Changes in the spatial and temporal pattern of natural forest cover on Hainan Island from the 1950s to the 2010s: implications for natural forest conservation and management
Cited by: 21
Author(s): Siliang Lin, Yaozhu Jiang, Jiekun He, Guangzhi Ma, Xinghong Yang, Haisheng Jiang
Software Mentions: 2
Published: over 9 years ago

10.7717/peerj.8517

Microbial communities on fish eggs from Acanthopagrus schlegelii and Halichoeres nigrescens at the XuWen coral reef in the Gulf of Tonkin
Cited by: 4
Author(s): Shaoping Bai, Gang Hou
Software Mentions: 2
Published: over 6 years ago

10.3389/fcimb.2021.628327

Salivary Microbiome Variation in Early Childhood Caries of Children 3–6 Years of Age and Its Association With Iron Deficiency Anemia and Extrinsic Black Stain
Cited by: 3
Author(s): Renfang Han, Jin Yue, Haozhi Lin, Nan Du, Jinfeng Wang, Zhen Wang, Fanzhi Kong, Jiaying Wang, Wei Gao, Lei Ma, Shoushan Bu
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2021.652315

Risk Prediction in Patients With Heart Failure With Preserved Ejection Fraction Using Gene Expression Data and Machine Learning
Cited by: 8
Author(s): Liye Zhou, Zhifei Guo, Bijue Wang, Yongqing Wu, Zhi Li, Hongmei Yao, Ruiling Fang, Yang Huang, Hongyan Cao, Yuehua Cui
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.991

A near-infrared spectroscopy routine for unambiguous identification of cryptic ant species
Cited by: 21
Author(s): Martin‐Carl Kinzner, Herbert C. Wagner, Andrea Peskoller, Karl Moder, Floyd E. Dowell, Wolfgang Arthofer, Birgit C. Schlick-Steiner, Florian M. Steiner
Software Mentions: 2
Published: almost 11 years ago

10.7717/peerj.5008

Variable retention harvesting influences belowground plant-fungal interactions of Nothofagus pumilio seedlings in forests of southern Patagonia
Cited by: 8
Author(s): Rebecca E. Hewitt, D. Lee Taylor, Teresa N. Hollingsworth, Christopher B. Anderson, Guillermo Martínez Pastur
Software Mentions: 2
Published: about 8 years ago

10.7717/peerj.1334

Local-scale topoclimate effects on treeline elevations: a country-wide investigation of New Zealand’s southern beech treelines
Cited by: 13
Author(s): Bradley S. Case, Hannah L. Buckley
Software Mentions: 2
Published: almost 11 years ago

10.7717/peerj.4071

How many species of mammals are there in Brazil? New records of rare rodents (Rodentia: Cricetidae: Sigmodontinae) from Amazonia raise the current known diversity
Cited by: 15
Author(s): Alexandre Reis Percequillo, Jeronymo Dalapicolla, Edson Fiedler de Abreu-Júnior, Paulo Ricardo O. Roth, Kátia Maria Paschoaletto Micchi de Barros Ferraz, Elisandra de Almeida Chiquito
Software Mentions: 2
Published: over 8 years ago

10.7717/peerj.4382

High-resolution modeling of thermal thresholds and environmental influences on coral bleaching for local and regional reef management
Cited by: 31
Author(s): Naoki H. Kumagai, Hiroya Yamano
Software Mentions: 2
Published: over 8 years ago

10.7717/peerj.4274

Habitat use in south-west European skinks (genusChalcides)
Cited by: 4
Author(s): Daniel Escoriza, Guillem Pascual, Alberto Sánchez‐Vialas
Software Mentions: 2
Published: over 8 years ago

10.3389/fgene.2021.625797

Identification of m6A-Associated RNA Binding Proteins Using an Integrative Computational Framework
Cited by: 4
Author(s): Yiqian Zhang, Michiaki Hamada
Software Mentions: 2
Published: over 5 years ago

10.3390/pathogens10050593

Dysregulation of Glycerophosphocholines in the Cutaneous Lesion Caused by Leishmania major in Experimental Murine Models
Cited by: 4
Author(s): Adwaita R. Parab, Diane Thomas, Sharon Lostracco-Johnson, Jair L. Siqueira-Neto, James H. McKerrow, Pieter C. Dorrestein, Laura-Isobel McCall
Software Mentions: 2
Published: over 5 years ago

10.1186/1756-3305-6-9

Terrestrial vegetation and aquatic chemistry influence larval mosquito abundance in catch basins, Chicago, USA
Cited by: 44
Author(s): Allison Gardner, Tavis K. Anderson, Gabriel L. Hamer, Dana E. Johnson, Kate E Varela, Edward D. Walker, Marilyn O. Ruiz
Software Mentions: 2
Published: over 13 years ago

10.1186/s13071-019-3682-6

Mapping the baseline prevalence of lymphatic filariasis across Nigeria
Cited by: 10
Author(s): Obiora A. Eneanya, Claudio Fronterrè, Ifeoma Anagbogu, Chukwu Okoronkwo, Tini Garske, Jorge Cano, Christl A. Donnelly
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12957-021-02266-7

An MR-based radiomics model for differentiation between hepatocellular carcinoma and focal nodular hyperplasia in non-cirrhotic liver
Cited by: 11
Author(s): Zongren Ding, Kongying Lin, Jun Fu, Qizhen Huang, Guoxu Fang, Yanyan Tang, Wuyi You, Zhaowang Lin, Zhan Li, Xinliang Pan, Yongyi Zeng
Software Mentions: 2
Published: about 5 years ago

10.1007/s11273-016-9516-9

Patterns and drivers for wetland connections in the Prairie Pothole Region, United States
Cited by: 23
Author(s): Melanie K. Vanderhoof, Jay R. Christensen, Laurie C. Alexander
Software Mentions: 2
Published: almost 10 years ago

10.3389/fimmu.2020.01618

High-Throughput Sequencing-Based Analysis of T Cell Repertoire in Lupus Nephritis
Cited by: 12
Author(s): Xiaolan Ye, Zhe Wang, Qiang Ye, Jing Zhang, Ping Huang, Jingying Song, Yiwen Li, Hongjuan Zhang, Feifeng Song, Zixue Xuan, Kejian Wang
Software Mentions: 2
Published: about 6 years ago

10.3389/fimmu.2020.01527

Using Serum Metabolomics to Predict Development of Anti-drug Antibodies in Multiple Sclerosis Patients Treated With IFNβ
Cited by: 22
Author(s): Kirsty E. Waddington, Artemis Papadaki, Leda Coelewij, Marsilio Adriani, Petra Nytrová, Eva Havrdová, Anna Fogdell‐Hahn, Rachel Farrell, Pierre Dönnes, Inés Pineda-Torra, Elizabeth C. Jury
Software Mentions: 2
Published: about 6 years ago

10.3390/ijerph18063318

The Impact of Multiple Sclerosis Disease Status and Subtype on Hematological Profile
Cited by: 3
Author(s): Jeffrey G. Miller, Jeremy Beales, Matthew D. Montierth, Farren Briggs, Scott F Frodsham, Mary F. Davis
Software Mentions: 2
Published: over 5 years ago

10.1186/s40462-015-0048-3

Proximate cues to phases of movement in a highly dispersive waterfowl, Anas superciliosa
Cited by: 24
Author(s): John F. McEvoy, David A. Roshier, Raoul F. H. Ribot, Andrew T. D. Bennett
Software Mentions: 2
Published: about 11 years ago

10.1186/s40462-020-00204-y

The boon and bane of boldness: movement syndrome as saviour and sink for population genetic diversity
Cited by: 4
Author(s): Joe Premier, Jörns Fickel, Marco Heurich, Stephanie Kramer‐Schadt
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2018.02393

Rapid Detection of Heterogeneous Vancomycin-Intermediate Staphylococcus aureus Based on Matrix-Assisted Laser Desorption Ionization Time-of-Flight: Using a Machine Learning Approach and Unbiased Validation
Cited by: 29
Author(s): Hsin-Yao Wang, Chun‐Hsien Chen, Tzong-Yi Lee, Jorng-Tzong Horng, Tsui Ping Liu, Yi-Ju Tseng, Jang Jih Lu
Software Mentions: 2
Published: almost 8 years ago

10.1186/s40462-020-00228-4

Inferring an animal’s environment through biologging: quantifying the environmental influence on animal movement
Cited by: 4
Author(s): Jasper A.J. Eikelboom, Henrik J. de Knegt, Maayke Klaver, Frank van Langevelde, T. van der Wal, Herbert H. T. Prins
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2016.02123

Metagenomic Analysis of Hot Springs in Central India Reveals Hydrocarbon Degrading Thermophiles and Pathways Essential for Survival in Extreme Environments
Cited by: 81
Author(s): Rituja Saxena, Darshan B. Dhakan, Parul Mittal, Prashant Waiker, Anirban Chowdhury, Arundhuti Ghatak, Vineet K. Sharma
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2018.01082

The Staphylococcus aureus Two-Component System AgrAC Displays Four Distinct Genomic Arrangements That Delineate Genomic Virulence Factor Signatures
Cited by: 21
Author(s): Kumari Sonal Choudhary, Nathan Mih, Jonathan M. Monk, Erol Kavvas, James T. Yurkovich, George Sakoulas
Software Mentions: 2
Published: over 8 years ago

10.3390/molecules23020251

Predicting the Effect of Single and Multiple Mutations on Protein Structural Stability
Cited by: 29
Author(s): Ramin Dehghanpoor, Evan Ricks, Katie Hursh, Sarah Gunderson, Roshanak Farhoodi, Nurit Haspel, Brian Hutchinson, Filip Jagodzinski
Software Mentions: 2
Published: over 8 years ago

10.3390/ijerph18094713

Understanding the Differential Impact of Vegetation Measures on Modeling the Association between Vegetation and Psychotic and Non-Psychotic Disorders in Toronto, Canada
Cited by: 2
Author(s): Abu Yousuf Md Abdullah, Jane Law, Zahid A Butt, Christopher M. Perlman
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.609950

Metagenomic Analysis of the Microbial Communities and Resistomes of Veal Calf Feces
Cited by: 8
Author(s): Debabrata Biswas, Seon Woo Kim, Ernest Hovingh, Jo Ann S. Van Kessel, Bradd J. Haley
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2015.00171

Biomarker-based classification of bacterial and fungal whole-blood infections in a genome-wide expression study
Cited by: 24
Author(s): Andreas Dix, Kerstin Hünniger, Michael Weber, Reinhard Guthke, Oliver Kurzai, Jörg Linde
Software Mentions: 2
Published: over 11 years ago

10.3389/fmicb.2018.02755

Microbial Biomarkers of Intestinal Barrier Maturation in Preterm Infants
Cited by: 38
Author(s): Bing Ma, Elias McComb, Pawel Gajer, Hongqiu Yang, Mike Humphrys, Adora C. Okogbule-Wonodi, Alessio Fasano, Jacques Ravel, Rose M. Viscardi
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2020.01861

Comparison of the Total, Diazotrophic and Ammonia-Oxidizing Bacterial Communities Between Under Organic and Conventional Greenhouse Farming
Cited by: 4
Author(s): Chen Chen, Hui Han, Ting Xu, Yuanda Lv, Kelin Hu, Xue Xian Li, Yuhui Qiao, Guo-Chun Ding, Ji Li
Software Mentions: 2
Published: about 6 years ago

10.3390/molecules24213837

Metabolomic Approach for Discrimination of Cultivation Age and Ripening Stage in Ginseng Berry Using Gas Chromatography-Mass Spectrometry
Cited by: 11
Author(s): Seong-Eun Park, Seung-Ho Seo, Eunju Kim, Dae-Hun Park, Kyung-Mok Park, Seung‐Sik Cho, Hong-Seok Son
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2018.02803

Nematodes and Microorganisms Interactively Stimulate Soil Organic Carbon Turnover in the Macroaggregates
Cited by: 40
Author(s): Yuji Jiang, Hu Zhou, Lijun Chen, Y. Yuan, Huan Fang, Lu Luan, Yan Chen, Xiaoyue Wang, Manqiang Liu, Huixin Li, Xinhua Peng, Bo Sun
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2016.01615

Classification of a Hypervirulent Aeromonas hydrophila Pathotype Responsible for Epidemic Outbreaks in Warm-Water Fishes
Cited by: 66
Author(s): Cody Rasmussen-Ivey, M. Jahangir Hossain, Sara Odom, Jeffery S. Terhune, William G. Hemstreet, Craig A. Shoemaker, Dunhua Zhang, De‐Hai Xu, Matt J. Griffin, Yongjie Liu, María José Figueras, Scott R. Santos, Joseph C. Newton, Mark R. Liles
Software Mentions: 2
Published: almost 10 years ago

10.3389/fmicb.2021.710940

Mucosa-Associated Microbial Profile Is Altered in Small Intestinal Bacterial Overgrowth
Cited by: 1
Author(s): Jia Li, Ru Zhang, Jing Ma, Shuai Tang, Yuan Li, Yi Li, Jun Wan
Software Mentions: 2
Published: about 5 years ago

10.1007/s11032-014-0143-y

Genome-wide prediction of three important traits in bread wheat
Cited by: 46
Author(s): G. Charmet, Eric Storlie, François-Xavier Oury, V. Laurent, D. Béghin, Laetitia Chevarin, Annie Lapierre, Marie-Reine Perretant, Bernard Rolland, Emmanuel Heumez, Laure Duchalais, Ellen Goudemand, Jacques Bordes, Olivier Robert
Software Mentions: 2
Published: about 12 years ago

10.3390/microorganisms8081111

Longitudinal Investigation of the Gut Microbiota in Goat Kids from Birth to Postweaning
Cited by: 22
Author(s): Yan Zhuang, Jianmin Chai, Kai Cui, Yanliang Bi, Qiyu Diao, Wenqin Huang, Hunter Usdrowski, Naifeng Zhang
Software Mentions: 2
Published: about 6 years ago

10.1186/s40168-017-0315-1

Feed-additive probiotics accelerate yet antibiotics delay intestinal microbiota maturation in broiler chicken
Cited by: 169
Author(s): Pengfei Gao, Castello Ma, Zheng Sun, Lifeng Wang, Shi Huang, Xiaoquan Su, Jian Xu, Heping Zhang
Software Mentions: 2
Published: about 9 years ago

10.3389/fnut.2021.718661

The Intestinal Microbiome Predicts Weight Loss on a Calorie-Restricted Diet and Is Associated With Improved Hepatic Steatosis
Cited by: 14
Author(s): Tien S. Dong, Kayti Luu, Venu Lagishetty, Farzaneh Sedighian, Sung Oh Woo, Benjamin W. Dreskin, William Katzka, Candace Chang, Yi Zhou, Nerea Arias-Jayo, Julianne C. Yang, Aaron I. Ahdoot, Jason Ye, Zhaoping Li, Joseph R. Pisegna, Jonathan P. Jacobs
Software Mentions: 2
Published: about 5 years ago

10.3389/fnut.2021.661056

Future Land Use for Insect Meat Production Among Countries: A Global Classification
Cited by: 3
Author(s): Hideyuki Doi, Randy Nathaniel Mulia
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.627325

Distinguishing Pseudoprogression From True Early Progression in Isocitrate Dehydrogenase Wild-Type Glioblastoma by Interrogating Clinical, Radiological, and Molecular Features
Cited by: 9
Author(s): Mingxiao Li, Xiaohui Ren, Gaochao Dong, Jincheng Wang, Haihui Jiang, Cong Yang, Xuzhe Zhao, Qinghui Zhu, Yong Cui, Kefu Yu, Shu-Chiang Lin
Software Mentions: 2
Published: over 5 years ago

10.1186/s40168-020-00928-4

Shifts in microbial diversity, composition, and functionality in the gut and genital microbiome during a natural SIV infection in vervet monkeys
Cited by: 9
Author(s): Anna J. Jasinska, Tien S. Dong, Venu Lagishetty, William Katzka, Jonathan P. Jacobs, Christopher A. Schmitt, Jennifer Danzy Cramer, Dongzhu Ma, Willem G. Coetzer, J. Paul Grobler, Trudy R. Turner, Nelson B. Freimer, Ivona Pandrea, Cristian Apetrei
Software Mentions: 2
Published: almost 6 years ago

10.1186/1471-2105-11-110

The behaviour of random forest permutation-based variable importance measures under predictor correlation
Cited by: 252
Author(s): Kristin K. Nicodemus, James D. Malley, Carolin Strobl, Andreas Ziegler
Software Mentions: 2
Published: over 16 years ago

10.3389/fonc.2021.650335

Determining Clinical Patient Selection Guidelines for Head and Neck Adaptive Radiation Therapy Using Random Forest Modelling and a Novel Simplification Heuristic
Cited by: 3
Author(s): Sarah Weppler, Harvey Quon, Colleen Schinkel, James Ddamba, Nabhya Harjai, Clarisse Vigal, Craig A. Beers, Lukas Van Dyke, Wendy Smith
Software Mentions: 2
Published: over 5 years ago

10.1186/s40168-018-0440-5

Predominant gut Lactobacillus murinus strain mediates anti-inflammaging effects in calorie-restricted mice
Cited by: 120
Author(s): Fengwei Pan, Liying Zhang, Min Li, Yingxin Hu, Benhua Zeng, Huijuan Yuan, Liping Zhao, Chenhong Zhang
Software Mentions: 2
Published: over 8 years ago

10.3389/fped.2021.576585

Identification of Potential Diagnostic Gene Targets for Pediatric Sepsis Based on Bioinformatics and Machine Learning
Cited by: 2
Author(s): Ying Qiao, Bo Zhang, Ying Liu
Software Mentions: 2
Published: over 5 years ago

10.1186/s40168-020-00802-3

Microecological Koch’s postulates reveal that intestinal microbiota dysbiosis contributes to shrimp white feces syndrome
Cited by: 103
Author(s): Zhijian Huang, Shenzheng Zeng, Jinbo Xiong, Dongwei Hou, Rui Zhou, Chengguang Xing, Dongdong Wei, Xiaogeng Deng, Lingfei Yu, Hao Wang, Zhao‐Peng Deng, Shaoping Weng, Kriengkrai Satapornvanit, Daliang Ning, Jizhong Zhou, Jianguo He
Software Mentions: 2
Published: over 6 years ago

10.3389/fphar.2017.00880

ToxiM: A Toxicity Prediction Tool for Small Molecules Developed Using Machine Learning and Chemoinformatics Approaches
Cited by: 41
Author(s): Ashok Sharma, Gopal N. Srivastava, Anirban Roy, Vineet K. Sharma
Software Mentions: 2
Published: almost 9 years ago

10.3389/fpls.2021.719092

Floral Scents of a Deceptive Plant Are Hyperdiverse and Under Population-Specific Phenotypic Selection
Cited by: 12
Author(s): Eva Gfrerer, Danae Laina, Marc Gibernau, Roman Fuchs, Martin Happ, Till Tolasch, Wolfgang Trutschnig, Anja C. Hörger, Hans Peter Comes, Stefan Dötterl
Software Mentions: 2
Published: almost 5 years ago

10.1186/s40168-018-0506-4

The evolutionary signal in metagenome phyletic profiles predicts many gene functions
Cited by: 3
Author(s): Vedrana Vidulin, Tomislav Šmuc, Sašo Džeroski, Fran Supek
Software Mentions: 2
Published: about 8 years ago

10.1186/s40168-019-0636-3

Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome
Cited by: 47
Author(s): Robert A. Quinn, Sandeep Adem, Robert H. Mills, William Comstock, Lindsay DeRight Goldasich, Gregory Humphrey, Alexander A. Aksenov, Alexei V. Melnik, Ricardo R. da Silva, Gail Ackermann, Nuno Bandeira, David J. Gonzalez, Doug Conrad, Anthony J. O’Donoghue, Rob Knight, Pieter C. Dorrestein
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.01104

A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system
Cited by: 247
Author(s): Jessica L. Metcalf, Laura Wegener Parfrey, Antonio G. González, Christian L. Lauber, Dan Knights, Gail Ackermann, Gregory Humphrey, Matthew J. Gebert, Will Van Treuren, Donna Berg-Lyons, Kyle G. Keepers, Yan Guo, James W. Bullard, Noah Fierer, David Carter, Rob Knight
Software Mentions: 2
Published: almost 13 years ago

10.3389/fpls.2020.588854

Networks of Physiological Adjustments and Defenses, and Their Synergy With Sodium (Na+) Homeostasis Explain the Hidden Variation for Salinity Tolerance Across the Cultivated Gossypium hirsutum Germplasm
Cited by: 4
Author(s): Kevin R. Cushman, Isaiah Catalino M. Pabuayon, Lori L. Hinze, Megan E Sweeney, Benildo G. de los Reyes
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2016.00133

Implementation of Genomic Prediction in Lolium perenne (L.) Breeding Populations
Cited by: 57
Author(s): Nastasiya F. Grinberg, Alan Lovatt, Matthew J. Hegarty, Andi Lovatt, Kirsten P. Skøt, Rhys Kelly, Tina Blackmore, Daniel Thorogood, Ross D. King, Ian Armstead, W. Powell, Leif Skøt
Software Mentions: 2
Published: over 10 years ago

10.3389/fpls.2017.01264

Development of a Traceability System Based on a SNP Array for Large-Scale Production of High-Value White Spruce (Picea glauca)
Cited by: 12
Author(s): Julie Godbout, Louis E. Tremblay, Caroline Levasseur, Patricia Lavigne, André Rainville, John Mackay, Jean Bousquet, Nathalie Isabel
Software Mentions: 2
Published: about 9 years ago

10.3389/fpls.2018.01667

Importance of Ecological Variables in Explaining Population Dynamics of Three Important Pine Pest Insects
Cited by: 10
Author(s): Rainer Hentschel, Katrin Möller, Aline Wenning, Annett Degenhardt, Jörg Schröder
Software Mentions: 2
Published: almost 8 years ago

10.1016/j.mex.2020.101067

Deeply digging the interaction effect in multiple linear regressions using a fractional-power interaction term
Cited by: 3
Author(s): Xinhai Li, Baidu Li, Guiming Wang, Xiangjiang Zhan, Marcel Holyoak
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2021.647347

Humans Share More Preferences for Floral Phenotypes With Pollinators Than With Pests
Cited by: 2
Author(s): Victoria Ruiz-Hernández, Lize Joubert, Amador Rodríguez-Gómez, Silvia Artuso, Jonathan G. Pattrick, Perla A. Gómez, Sarah Eckerstorfer, Sarah Sophie Brandauer, Carolina G. I. Trcka-Rojas, Luis Martínez-Reina, Josh Booth, Alex Lau‐Zhu, Julia Weiß, Pablo Bielza, Beverley J. Glover, Robert R. Junker, Marcos Egea‐Cortines
Software Mentions: 2
Published: about 5 years ago

10.3389/fpsyt.2020.00239

The Differences Between Individuals Engaging in Nonsuicidal Self-Injury and Suicide Attempt Are Complex (vs. Complicated or Simple)
Cited by: 19
Author(s): Xiaoxia Huang, Jessica D. Ribeiro, Joseph C. Franklin
Software Mentions: 2
Published: over 6 years ago

10.3389/fpsyg.2019.02858

Nomograms Predicting Self-Regulated Learning Levels in Chinese Undergraduate Medical Students
Cited by: 2
Author(s): Jinlong Yang, Guoyang Zhang, Runzhi Huang, Penghui Yan, Peng Hu, Lan-Ting Huang, Tong Meng, Jie Zhang, Ruilin Liu, Ying Zeng, Wei Chen, Huixia Shen, Miao Xuan, Qun Li, Meiqiong Gong, Wenting Chen, Haifeng Chen, Kaiyang Fan, Jing Wu, Zongqiang Huang, Liming Cheng, Weiming Yang
Software Mentions: 2
Published: over 6 years ago

10.1534/g3.111.001560

Predicting the Fission Yeast Protein Interaction Network
Cited by: 28
Author(s): Véra Pancaldi, Ömer Saraç, Charalampos Rallis, Janel R. McLean, Martin Převorovský, Kathleen L. Gould, Andreas Beyer, Jürg Bähler
Software Mentions: 2
Published: over 14 years ago

10.1002/advs.202003049

Modeling Heterogeneity of Triple‐Negative Breast Cancer Uncovers a Novel Combinatorial Treatment Overcoming Primary Drug Resistance
Cited by: 11
Author(s): Fabienne Lamballe, Fahmida Ahmad, Yaron Vinik, Olivier Castellanet, Fabrice Daian, Anna Katharina Müller, Ulrike A. Köhler, Anne Laure Bailly, Emmanuelle Josselin, Rémy Castellano, Christelle Cayrou, Emmanuelle Charafe‐Jauffret, Gordon B. Mills, Vincent Géli, Jean-Paul Borg, Sima Lev, Flavio Maina
Software Mentions: 2
Published: over 5 years ago

10.1534/g3.120.401847

Leveraging Multiple Layers of Data To Predict Drosophila Complex Traits
Cited by: 18
Author(s): Fabio Morgante, Wen Huang, Peter Sørensen, Christian Maltecca, Trudy F. C. Mackay
Software Mentions: 2
Published: almost 6 years ago

10.3390/genes11121493

Tensor-Decomposition-Based Unsupervised Feature Extraction Applied to Prostate Cancer Multiomics Data
Cited by: 2
Author(s): Y-h. Taguchi, Turki Turki
Software Mentions: 2
Published: over 5 years ago

10.3390/metabo9010005

Random Forest Analysis of Untargeted Metabolomics Data Suggests Increased Use of Omega Fatty Acid Oxidation Pathway in Drosophila Melanogaster Larvae Fed a Medium Chain Fatty Acid Rich High-Fat Diet
Cited by: 9
Author(s): Vishal H Oza, Joseph K. Aicher, Laura K. Reed
Software Mentions: 2
Published: over 7 years ago

10.1186/s13059-015-0581-9

Predicting genome-wide DNA methylation using methylation marks, genomic position, and DNA regulatory elements
Cited by: 163
Author(s): Weiwei Zhang, Tim D. Spector, Panos Deloukas, Jordana T. Bell, Barbara E. Engelhardt
Software Mentions: 2
Published: over 11 years ago

Projects: cran: randomForest

Science Score: 100/100

Bonuses:

Papers Mentioning randomForest 1,447