cran: poppr | Projects | Ecosyste.ms: Papers

10.1038/s41598-021-83637-8

A comparative analysis of SLA-DRB1 genetic diversity in Colombian (creoles and commercial line) and worldwide swine populations
Cited by: 2
Author(s): Carmen Teresa Celis-Giraldo, Michel David Bohórquez, Milena Camargo, Carlos F. Suárez, Anny Camargo, Kewin Rodríguez-Obediente, Alejandra Martínez, Carlos Edmundo Lucero, Byron Antonio Ruíz Hernández, Raúl Manzano-Román, Manuel A. Patarroyo
Software Mentions: 2
Published: over 3 years ago

10.1128/mBio.00392-19

Nonrandom Distribution of Azole Resistance across the Global Population of Aspergillus fumigatus
Cited by: 63
Author(s): Thomas R. Sewell, Jianing Zhu, Johanna Rhodes, Ferry Hagen, Jacques F. Meis, Matthew C. Fisher, Thibaut Jombart
Software Mentions: 2
Published: over 5 years ago

10.3390/jof7020111

Worldwide Genetic Structure Elucidates the Eurasian Origin and Invasion Pathways of Dothistroma septosporum, Causal Agent of Dothistroma Needle Blight
Cited by: 14
Author(s): Martin Mullett, Rein Drenkhan, Kalev Adamson, P Boroń, Anna Lenart‐Boroń, Irene Barnes, Michal Tomšovský, Zuzana Jánošíková, Katarína Adamčíková, Emília Ondrušková, Valentin Queloz, Barbara Piškur, Dmitry L. Musolin, Kateryna Davydenko, Маргарита Георгиева, Sophie Schmitz, Audrius Kačergius, Luisa Ghelardini, Jelena Kranjec Orlović, Michael M. Müller, Funda Oskay, Tine Hauptman, Ágnes Halász, Svetlana Markovskaja, Halvor Solheim, Martti Vuorinen, Renate Heinzelmann, Richard Hamelin, Adam Konečný
Software Mentions: 2
Published: almost 4 years ago

10.1007/s13205-020-02513-w

Comparative analysis of genomic- and EST-SSRs in European plum (Prunus domestica L.): implications for the diversity analysis of polyploids
Cited by: 9
Author(s): Rosanna Manco, Pasquale Chiaiese, Boris Basile, Giuseppe Colla
Software Mentions: 2
Published: about 4 years ago

10.7554/eLife.36350

Correction: Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management
Cited by: 3
Author(s): Elizabeth A. Savory, Skylar L Fuller, Alexandra J. Weisberg, William J. Thomas, Michael I. Gordon, Danielle M. Stevens, Allison Creason, Michael S. Belcher, Maryna Serdani, Michele S. Wiseman, Niklaus J. Grünwald, M. L. Putnam, Jeff H. Chang
Software Mentions: 1
Published: over 6 years ago

10.1002/ece3.6382

Lack of conspicuous sex‐biased dispersal patterns at different spatial scales in an Asian endemic goose species breeding in unpredictable steppe wetlands
Cited by: 2
Author(s): Qin Zhu, Iderbat Damba, Qingshan Zhao, Kunpeng Yi, Nyambayar Batbayar, Tseveenmyadag Natsagdorj, Batmunkh Davaasuren, Xin Wang, S. B. Rozenfeld, Sachiko Moriguchi, Aibin Zhan, Lei Cao, Anthony D. Fox
Software Mentions: 1
Published: over 4 years ago

10.3390/microorganisms9030536

Molecular Epidemiology of Xanthomonas euvesicatoria Strains from the Balkan Peninsula Revealed by a New Multiple-Locus Variable-Number Tandem-Repeat Analysis Scheme
Cited by: 9
Author(s): Taca Vancheva, Nevena Bogatzevska, Penka Moncheva, Saša Mitrev, Christian Vernière, Ralf Koebnik
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-018-23438-8

Analysis of microsatellites from transcriptome sequences of Phytophthora capsici and applications for population studies
Cited by: 21
Author(s): Camilo H. Parada-Rojas, Lina M. Quesada‐Ocampo
Software Mentions: 1
Published: over 6 years ago

10.3390/jof6030120

Molecular Epidemiology of Azole-Resistant Aspergillus fumigatus in Sawmills of Eastern France by Microsatellite Genotyping
Cited by: 2
Author(s): Audrey Jeanvoine, Chloé Godeau, Audrey Laboissière, Gabriel Reboux, Laurence Millon, Steffi Rocchi
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-018-33714-2

A comprehensive portrait of Y-STR diversity of Indian populations and comparison with 129 worldwide populations
Cited by: 20
Author(s): Mugdha Singh, Anujit Sarkar, Madhusudan R. Nandineni
Software Mentions: 1
Published: about 6 years ago

10.1002/ece3.4997

Postglacial colonization history reflects in the genetic structure of natural populations ofFestuca rubrain Europe
Cited by: 9
Author(s): Maria von Cräutlein, Päivi H. Leinonen, Helena Korpelainen, Marjo Helander, Henry Väre, Kari Saikkonen
Software Mentions: 1
Published: over 5 years ago

10.1002/ece3.2917

A worldwide phylogeography of the whiteworm lichens Thamnolia reveals three lineages with distinct habitats and evolutionary histories
Cited by: 19
Author(s): Ioana Onuț-Brännström, Leif Tibell, Hanna Johannesson
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-38594-8

Monitoring of the field application of Metarhizium anisopliae in Brazil revealed high molecular diversity of Metarhizium spp in insects, soil and sugarcane roots
Cited by: 33
Author(s): Natasha Sant’Anna Iwanicki, Alessandro Alves‐Pereira, Ana Beatriz Riguetti Zanardo Botelho, Janayne Maria Rezende, Rafael de Andrade Moral, Maria Imaculada Zucchi, Ìtalo Delalibera
Software Mentions: 1
Published: over 5 years ago

10.1002/ece3.7272

Adaptive population structure shifts in invasive parasitic mites, Varroa destructor
Cited by: 9
Author(s): Arrigo Moro, T. Blacquière, Bjørn Dahle, Vincent Dietemann, Yves Le Conte, Barbara Locke, Peter Neumann, Alexis Beaurepaire
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-019-44871-3

Integration of expert knowledge in the definition of Swiss pear core collection
Cited by: 7
Author(s): Jorge Urrestarazu, Christina Kägi, Andreas Bühlmann, Jennifer Gaßmann, L.G. Santesteban, Jürg E. Frey, M. Kellerhals, Carlos Miranda Jiménez
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-47801-5

Population genetics of ectoparasitic mites suggest arms race with honeybee hosts
Cited by: 18
Author(s): Alexis Beaurepaire, Arrigo Moro, Fanny Mondet, Yves Le Conte, Peter Neumann, Barbara Locke
Software Mentions: 1
Published: over 5 years ago

10.1002/ece3.1149

Panmixia defines the genetic diversity of a unique arthropod‐dispersed fungus specific toProteaflowers
Cited by: 19
Author(s): Janneke Aylward, L.L. Dreyer, Emma Theodora Steenkamp, Michael J. Wingfield, Francois Roets
Software Mentions: 1
Published: over 10 years ago

10.3390/microorganisms8091315

Comparative Evaluation of Band-Based Genotyping Methods for Mycobacterium intracellulare and Its Application for Epidemiological Analysis
Cited by: 2
Author(s): Jeong-Ih Shin, Jong-Hun Ha, Dong-Hae Lee, Jeong-Gyu Choi, Kyu-Min Kim, Seung Jun Lee, Yi Yeong Jeong, Jong Deog Lee, Myunghwan Jung, Seung‐Chul Baik, Woo Kon Lee, Hyung-Lyun Kang, Min-Kyoung Shin, Jung‐Wan Yoo
Software Mentions: 1
Published: about 4 years ago

10.1002/ece3.5330

Colonization history and population differentiation of the Honey Bees ( Apis mellifera L.) in Puerto Rico
Cited by: 11
Author(s): Jenny P. Acevedo‐Gonzalez, Alberto Galindo‐Cardona, Arián Avalos, Charles W. Whitfield, Dania M. Rodríguez, José L. Uribe-Rubio, Tuğrul Giray
Software Mentions: 1
Published: about 5 years ago

10.1002/ece3.6660

Long‐lived larch clones may conserve adaptations that could restrict treeline migration in northern Siberia
Cited by: 7
Author(s): Stefan Kruse, Alexei Kolmogorov, Ludmila A Pestryakova, Ulrike Herzschuh
Software Mentions: 1
Published: over 4 years ago

10.1002/ece3.7012

Centennial clonal stability of asexual Daphnia in Greenland lakes despite climate variability
Cited by: 4
Author(s): Maison Dane, Nicholas Anderson, Christopher L. Osburn, John K. Colbourne, Dagmar Frisch
Software Mentions: 1
Published: about 4 years ago

10.2135/cropsci2017.09.0531

Genetic Analysis of Tropical Midaltitude-Adapted Maize Populations under Stress and Nonstress Conditions
Cited by: 9
Author(s): Dan Makumbi, Silvano Assanga, Aly Diallo, Cosmos Magorokosho, Godfrey Asea, Mosisa Worku, Marianne Bänziger
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0208606

Insights into evolving global populations of Phytophthora infestans via new complementary mtDNA haplotype markers and nuclear SSRs
Cited by: 23
Author(s): Frank N. Martin, Yonghong Zhang, D. E. L. Cooke, Mike Coffey, Niklaus J. Grünwald, William E. Fry
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0139188

Genetic Variation of Sclerotinia sclerotiorum from Multiple Crops in the North Central United States
Cited by: 41
Author(s): Laura Aldrich‐Wolfe, Steven E. Travers, Berlin D. Nelson
Software Mentions: 1
Published: about 9 years ago

10.1093/aobpla/plaa070

Hybridization and introgression of native and foreignSorbustree species in unique environments of protected mountainous areas
Cited by: 2
Author(s): Anna Hebda, Marta Kempf, Witold Wachowiak, Bartosz Pluciński, Paweł Kauzal, Tomasz Zwijacz‐Kozica
Software Mentions: 1
Published: almost 4 years ago

10.3390/jof7050375

Development of CAPS Markers for Evaluation of Genetic Diversity and Population Structure in the Germplasm of Button Mushroom (Agaricus bisporus)
Cited by: 1
Author(s): Hyejin An, Hwa-Yong Lee, Donghwan Shim, Seong Ho Choi, Hyunwoo Cho, Tae Kyung Hyun, Ick-Hyun Jo, Jong‐Wook Chung
Software Mentions: 1
Published: over 3 years ago

10.3390/jof7090749

Abundant Genetic Diversity and Extensive Differentiation among Geographic Populations of the Citrus Pathogen Diaporthe citri in Southern China
Cited by: 4
Author(s): Tao Xiong, Yanjun Zeng, Wen Wang, Pu-Dong Li, Yunpeng Gai, Chen Jiao, Zhiliang Zhu, Jianping Xu, Hongye Li
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0220031

Diatraea saccharalis history of colonization in the Americas. The case for human-mediated dispersal
Cited by: 14
Author(s): Fabricio José Biasotto Francischini, Erick M. G. Cordeiro, Jaqueline Bueno de Campos, Alessandro Alves‐Pereira, João Paulo Gomes Viana, Weijie Xing, Wei Wei, Patrick J. Brown, Andrea L. Joyce, Gabriela Murúa, Sofia Victoria Fogliata, Steven J. Clough, Maria Imaculada Zucchi
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0205849

Clonality and geographic structure of host-specialized populations of Corynespora cassiicola causing emerging target spot epidemics in the southeastern United States
Cited by: 14
Author(s): Leilani G. Sumabat, Robert C. Kemerait, Dong Kyun Kim, Y. R. Mehta, Marin Talbot Brewer
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-78103-w

Genomic surveillance of Plasmodium falciparum and Plasmodium vivax cases at the University Hospital in Tegucigalpa, Honduras
Cited by: 5
Author(s): Hugo O. Valdivia, Fredy E. Villena, Stephen E. Lizewski, Jorge García García, Jackeline Alger, Danett K. Bishop
Software Mentions: 1
Published: almost 4 years ago

10.1099/ijsem.0.004655

Greenland and Svalbard glaciers host unknown basidiomycetes: the yeast Camptobasidium arcticum sp. nov. and the dimorphic Psychromyces glacialis gen. and sp. nov.
Cited by: 5
Author(s): Laura Perini, Kristina Andrejašič, Cene Gostinčar, Nina Gunde‐Cimerman, Polona Zalar
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0185161

The origin of multiple clones in the parthenogenetic lizard species Darevskia rostombekowi
Cited by: 26
Author(s): A. P. Ryskov, F. A. Osipov, A. V. Omelchenko, S. K. Semyenova, A. E. Girnyk, В. И. Корчагин, A. A. Vergun, Robert W. Murphy
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0195591

Genetic diversity of Spanish Prunus domestica L. germplasm reveals a complex genetic structure underlying
Cited by: 28
Author(s): Jorge Urrestarazu, P. Errea, Carlos Miranda Jiménez, L.G. Santesteban, Ana Pina
Software Mentions: 1
Published: over 6 years ago

10.3390/plants9091160

Integrating Multiple Lines of Evidence to Explore Intraspecific Variability in a Rare Endemic Alpine Plant and Implications for Its Conservation
Cited by: 3
Author(s): Martino Adamo, Stefano Mammola, Virgile Noble, Marco Mucciarelli
Software Mentions: 1
Published: about 4 years ago

10.1111/ppa.12762

Population structure of the ash dieback pathogen, Hymenoscyphus fraxineus , in relation to its mode of arrival in the UK
Cited by: 10
Author(s): Elizabeth S. Orton, C. M. Brasier, Lorelei Bilham, Anuradha Bansal, Joan Webber, J. K. M. Brown
Software Mentions: 1
Published: about 7 years ago

10.7717/peerj.8217

Bacterial microbiota composition of Ixodes ricinus ticks: the role of environmental variation, tick characteristics and microbial interactions
Cited by: 46
Author(s): Tuomas Aivelo, Anna Norberg, Barbara Tschirren
Software Mentions: 1
Published: almost 5 years ago

10.7717/peerj.1875

Genetic diversity inOryza glumaepatulawild rice populations in Costa Rica and possible gene flow fromO. sativa
Cited by: 15
Author(s): Eric J. Fuchs, Allan Meneses Martínez, Amanda Calvo, Melania Muñoz, Griselda Arrieta-Espinoza
Software Mentions: 1
Published: over 8 years ago

10.3390/pathogens9040306

Genetic Diversity and Recombination in the Plant Pathogen Sclerotinia sclerotiorum Detected in Sri Lanka
Cited by: 5
Author(s): T. Mahalingam, Weidong Chen, C. S. K. Rajapakse, K. P. Somachandra, R.N. Attanayake
Software Mentions: 1
Published: over 4 years ago

10.1128/mBio.01941-17

Phylogenetics of a Fungal Invasion: Origins and Widespread Dispersal of White-Nose Syndrome
Cited by: 65
Author(s): Kevin P. Drees, Jeffrey M. Lorch, Sébastien J. Puechmaille, Katy L. Parise, Gudrun Wibbelt, Joseph R. Hoyt, Keping Sun, Ariunbold Jargalsaikhan, Munkhnast Dalannast, Jonathan M. Palmer, Daniel L. Lindner, A. Marm Kilpatrick, Talima Pearson, Paul Keim, David S. Blehert, Jeffrey T. Foster
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.funeco.2018.05.012

Aspergillus flavus resident in Kenya: High genetic diversity in an ancient population primarily shaped by clonal reproduction and mutation-driven evolution
Cited by: 27
Author(s): Md‐Sajedul Islam, Kenneth A. Callicott, Charity Mutegi, Ranajit Bandyopadhyay, Peter J. Cotty
Software Mentions: 1
Published: about 6 years ago

10.3389/fpls.2020.563110

Reproductive Assurance Maintains Red-Flowered Plants of Lysimachia arvensis in Mediterranean Populations Despite Inbreeding Depression
Cited by: 4
Author(s): Francisco Javier Jiménez‐López, Pedro Ortiz, María Talavera, Montserrat Arista
Software Mentions: 1
Published: almost 4 years ago

10.3389/fpls.2017.02026

Disturbance Is an Important Driver of Clonal Richness in Tropical Seagrasses
Cited by: 30
Author(s): Kathryn McMahon, Richard D. Evans, Kor‐jent van Dijk, Udhi Eko Hernawan, Gary A. Kendrick, Paul S. Lavery, Ryan J. Lowe, Marji Puotinen, Michelle Waycott
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41438-021-00638-4

Genome-wide association study identifies QTL for eight fruit traits in cultivated tomato (Solanum lycopersicum L.)
Cited by: 13
Author(s): Minkyung Kim, Thuy Tien Phan Nguyen, Joon-Hyung Ahn, Gi-Jun Kim, Sung-Chur Sim
Software Mentions: 1
Published: almost 4 years ago

10.3389/fgene.2019.00872

Genotyping by Sequencing of Cultivated Lentil (Lens culinaris Medik.) Highlights Population Structure in the Mediterranean Gene Pool Associated With Geographic Patterns and Phenotypic Variables
Cited by: 29
Author(s): Stefano Pavan, Nicoletta Bardaro, Valentina Fanelli, Angelo Raffaele Marcotrigiano, Giacomo Mangini, Francesca Taranto, Domenico Catalano, Cinzia Montemurro, Claudio De Giovanni, Concetta Lotti, Luigi M. Ricciardi
Software Mentions: 1
Published: about 5 years ago

10.1007/s13353-020-00602-3

Mitochondrial relationships between various chamomile accessions
Cited by: 3
Author(s): Joana Ruzicka, Marion Hacek, Johannes Novak
Software Mentions: 1
Published: almost 4 years ago

10.3389/fgene.2020.00908

Characterization of Sub-Regional Variation in Saccharomyces Populations and Grape Phenolic Composition in Pinot Noir Vineyards of a Canadian Wine Region
Cited by: 3
Author(s): Elaine Cheng, Jonathan T. Martiniuk, Jonah Hamilton, Garrett C. McCarthy, Simone D. Castellarin, Vivien Measday
Software Mentions: 1
Published: about 4 years ago

10.1111/eva.12733

Using host‐associated differentiation to track source population and dispersal distance among insect vectors of plant pathogens
Cited by: 7
Author(s): Gina M. Angelella, Andy Michel, Ian Kaplan
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13071-020-04539-8

Diagnosis and identification of Leishmania species in patients with cutaneous leishmaniasis in the state of Roraima, Brazil's Amazon Region
Cited by: 10
Author(s): Joseneide Viana de Almeida, Cecília Pereira de Souza, Andressa Alencastre Fuzari, Christie A. Joya, Hugo O. Valdivia, Daniella Castanheira Bartholomeu, Reginaldo Peçanha Brazil
Software Mentions: 1
Published: almost 4 years ago

10.1111/eva.12719

Phylogeography of the highly invasive sugar beet nematode,Heterodera schachtii(Schmidt, 1871), based on microsatellites
Cited by: 6
Author(s): Jiyeon Kim, Gang Ni, Sang Woo Kim, Jae Yong Chun, Elizabeth M.A. Kern, Joong Ki Park
Software Mentions: 1
Published: about 6 years ago

10.1111/eva.12788

Deciphering how plant pathogenic bacteria disperse and meet: Molecular epidemiology ofXanthomonas citripv. citriat microgeographic scales in a tropical area of Asiatic citrus canker endemicity
Cited by: 13
Author(s): Olivier Pruvost, Karine Boyer, Virginie Ravigné, Damien Richard, Christian Vernière
Software Mentions: 1
Published: over 5 years ago

10.1002/ece3.4248

Phenotypic plasticity and local adaptation favor range expansion of a Neotropical palm
Cited by: 19
Author(s): Pedro Henrique Santin Brancalion, Giancarlo Conde Xavier Oliveira, Maria Imaculada Zucchi, Mariana Novello, Juliano van Melis, Sílvio Sandoval Zocchi, Robin L. Chazdon, Ricardo Ribeiro Rodrigues
Software Mentions: 1
Published: over 6 years ago

Projects: cran: poppr

Papers Mentioning poppr 251