Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: poppr

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/poppr

Genetic Analysis of Populations with Mixed Reproduction
40 versions
Latest release: over 1 year ago
6 dependent packages
3,338 downloads last month

Papers Mentioning poppr 251

10.1038/s41598-020-73272-0
Climatic oscillations in Quaternary have shaped the co-evolutionary patterns between the Norway spruce and its host-associated herbivore
Cited by: 13
Author(s): Jakub Goczał, Andrzej Oleksa, Robert Rossa, Igor J. Chybicki, Katarzyna Meyza, Radosław Plewa, Matti Landvik, Mauro Gobbi, Gernot Hoch, Vytautas Tamutis, Maksims Balalaikins, Dmitry Telnov, Maria-Magdalena Dascălu, Adam Tofilski
Software Mentions: 4
Published: about 4 years ago
10.1093/aobpla/plab015
Ecotypic differentiation of a circumpolar Arctic-alpine species at mid-latitudes: variations in the ploidy level and reproductive system of <i>Vaccinium vitis-idaea</i>
Cited by: 3
Author(s): Akimi Wakui, Gaku Kudo
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pone.0223953
Genomic impact of severe population decline in a nomadic songbird
Cited by: 14
Author(s): Ross Crates, George Olah, Marcin Adamski, Nicola Aitken, Samuel Banks, Dean Ingwersen, Louis Ranjard, Laura Rayner, Dejan Stojanović, Tomasz Suchan, Brenton von Takach, Robert Heinsohn
Software Mentions: 4
Published: about 5 years ago
10.1186/s12870-016-0933-y
Identification by the DArTseq method of the genetic origin of the Coffea canephora cultivated in Vietnam and Mexico
Cited by: 39
Author(s): Andréa Garavito, Christophe Montagnon, Romain Guyot, Benoît Bertrand
Software Mentions: 4
Published: about 8 years ago
10.1038/s41598-020-59887-3
Genomic divergence reveals unique populations among Indian Yaks
Cited by: 8
Author(s): S. Jayakumar, M R Vineeth, Tarida Marlin Surya, Kritika Singh, S. P. Dixit, S. K. Niranjan, M. S. Tantia, I. D. Gupta, Dhanalakshmi Ravikumar
Software Mentions: 4
Published: over 4 years ago
10.1002/ece3.7531
Population differences in Chinook salmon (<i>Oncorhynchus tshawytscha</i>) DNA methylation: Genetic drift and environmental factors
Cited by: 6
Author(s): Clare J. Venney, Ben J. G. Sutherland, Terry D. Beacham, Daniel D. Heath
Software Mentions: 4
Published: over 3 years ago
10.1002/ece3.7447
The impact of aquaculture on the genetics and distribution of the onuphid annelid <i>Diopatra biscayensis</i>
Cited by: 2
Author(s): Matthew P. Galaska, David S. Wethey, Andrés Arias, Stanislas F. Dubois, Kenneth M. Halanych, Sarah A. Woodin
Software Mentions: 4
Published: over 3 years ago
10.1002/ece3.5239
Multiple introductions and population structure during the rapid expansion of the invasive Sahara mustard (<i>Brassica tournefortii</i>)
Cited by: 12
Author(s): Daniel E. Winkler, Kenneth James Chapin, F. Ochsenbein, J. David Garmon, Brandon S. Gaut, Travis E. Huxman
Software Mentions: 4
Published: over 5 years ago
10.1002/ece3.4610
Genetic diversity and differentiation among <i>Prosopis alba</i> (Leguminosae) populations from dry valleys of Bolivia with different levels of human disturbance and altitude
Cited by: 5
Author(s): Cecilia Bessega, Carolina Luciana Pometti, Ramiro Pablo López, Daniel M. Larrea‐Alcázar, Renée H. Fortunato, Beatriz Ofelia Saidman, Juan C. Vilardi
Software Mentions: 4
Published: about 6 years ago
10.1038/s41598-018-22580-7
Brettanomyces bruxellensis population survey reveals a diploid-triploid complex structured according to substrate of isolation and geographical distribution
Cited by: 70
Author(s): Marta Avramova, Alice Cibrario, Emilien Peltier, Monika Coton, Emmanuel Coton, Joseph Schacherer, Giuseppe Spano, Vittorio Capozzi, Giuseppe Blaiotta, Franck Salin, Marguerite Dols‐Lafargue, Paul R. Grbin, Chris Curtin, Warren Albertin, Isabelle Masneuf‐Pomarède
Software Mentions: 4
Published: over 6 years ago
10.1002/ece3.5937
Telemetry and genetics reveal asymmetric dispersal of a lake‐feeding salmonid between inflow and outflow spawning streams at a microgeographic scale
Cited by: 9
Author(s): Ross Finlay, Russell Poole, Jamie Coughlan, Karl P. Phillips, Paulo A. Prodöhl, D. Cotter, Philip McGinnity, Thomas E. Reed
Software Mentions: 4
Published: almost 5 years ago
10.1002/ece3.4457
Habitat or temporal isolation: Unraveling herbivore-parasitoid speciation patterns using double digest RADseq
Cited by: 9
Author(s): Y. Miles Zhang, Amber Bass, Diana Catalina Fernández, Barbara J. Sharanowski
Software Mentions: 4
Published: about 6 years ago
10.1098/rsos.160992
Mixing of porpoise ecotypes in southwestern UK waters revealed by genetic profiling
Cited by: 30
Author(s): Michaël C. Fontaine, Olivier Thatcher, Nicolas Ray, Sylvain Piry, Andrew Brownlow, Nicholas J. Davison, Paul D. Jepson, Rob Deaville, Simon J. Goodman
Software Mentions: 4
Published: over 7 years ago
10.1371/journal.ppat.1006358
A spatio-temporal assessment of simian/human immunodeficiency virus (SHIV) evolution reveals a highly dynamic process within the host
Cited by: 22
Author(s): Alison F. Feder, Christopher E. Kline, Patricia Polacino, Mackenzie L. Cottrell, Angela D. M. Kashuba, Brandon F. Keele, Shiu Lok Hu, Dmitri A. Petrov, Pleuni S. Pennings, Zandrea Ambrose
Software Mentions: 4
Published: over 7 years ago
10.1111/eva.13079
Host plants and <i>Wolbachia</i> shape the population genetics of sympatric herbivore populations
Cited by: 11
Author(s): Zhen F. Fu, Amanda R. Meier, Brendan Epstein, Alan O. Bergland, Carmen I. Castillo Carrillo, William C. Cooper, Regina K. Cruzado, David Horton, Andrew S. Jensen, Joanna L. Kelley, Arash Rashed, Stuart R. Reitz, Silvia I. Rondon, Jenita Thinakaran, Erik J. Wenninger, Carrie H. Wohleb, David W. Crowder, William E. Snyder
Software Mentions: 4
Published: about 4 years ago
10.3389/fgene.2015.00208
Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality
Cited by: 585
Author(s): Zhian N. Kamvar, Jonah C. Brooks, Niklaus J. Grünwald
Software Mentions: 4
Published: over 9 years ago
10.1186/s42238-020-00036-y
A single nucleotide polymorphism assay sheds light on the extent and distribution of genetic diversity, population structure and functional basis of key traits in cultivated north American cannabis
Cited by: 12
Author(s): Philippe Henry, Surender Khatodia, Karan Kapoor, Britni Gonzales, Alexis Middleton, Kevin C. Hong, Aaron Hilyard, Steve L. Johnson, Davis Allen, Zachary Chester, Dan Jin, José Carlos Rodriguez Jule, Iain F. Wilson, Manu P. Gangola, Jason Broome, Deron Caplan, Dinesh Adhikary, Michael K. Deyholos, Michael Morgan, Oliver W. Hall, Brent J. Guppy, Cindy S. Orser
Software Mentions: 4
Published: about 4 years ago
10.3390/insects11120834
Low Genetic Variability in Bemisia tabaci MEAM1 Populations within Farmscapes of Georgia, USA
Cited by: 16
Author(s): Saurabh Gautam, Michael S. Crossley, Bhabesh Dutta, Timothy Coolong, Alvin M. Simmons, Andre da Silva, William E. Snyder, Rajagopalbabu Srinivasan
Software Mentions: 4
Published: almost 4 years ago
10.1002/ece3.5636
How relatedness between mates influences reproductive success: An experimental analysis of self‐fertilization and biparental inbreeding in a marine bryozoan
Cited by: 5
Author(s): Scott C. Burgess, Lisa Sander, Marília Bueno
Software Mentions: 3
Published: about 5 years ago
10.1371/journal.pone.0243853
Quick and efficient approach to develop genomic resources in orphan species: Application in Lavandula angustifolia
Cited by: 3
Author(s): Berline Fopa Fomeju, Dominique Brunel, Aurélie Berard, Jean-Baptiste Rivoal, Philippe Gallois, Marie‐Christine Le Paslier, Jean-Pierre Bouverat-Bernier
Software Mentions: 3
Published: almost 4 years ago
10.1371/journal.pone.0186266
Morphological and molecular characterization of Brazilian populations of Diatraea saccharalis (Fabricius, 1794) (Lepidoptera: Crambidae) and the evolutionary relationship among species of Diatraea Guilding
Cited by: 9
Author(s): Fabricio José Biasotto Francischini, Jaqueline Bueno de Campos, Alessandro Alves‐Pereira, João Paulo Gomes Viana, Christopher C. Grinter, Steven J. Clough, Maria Imaculada Zucchi
Software Mentions: 3
Published: about 7 years ago
10.1186/s12863-021-00958-3
Morphological characterization and genetic diversity analysis of Tunisian durum wheat (Triticum turgidum var. durum) accessions
Cited by: 11
Author(s): Maroua Ouaja, Bochra Amina Bahri, Lamia Aouini, Sahbi Ferjaoui, Maher Medini, Thierry C. Marcel, Sonia Hamza
Software Mentions: 3
Published: almost 4 years ago
10.3389/fpls.2021.692463
Genome-Wide Assessment of Population Structure and Genetic Diversity of the Global Finger Millet Germplasm Panel Conserved at the ICRISAT Genebank
Cited by: 3
Author(s): C. Backiyalakshmi, Mani Vetriventhan, Santosh Deshpande, C. Babu, Victor Allan, D. Naresh, Rajeev Gupta, V. C. R. Azevedo
Software Mentions: 3
Published: over 3 years ago
10.1002/ece3.4058
Molecular signatures of host specificity linked to habitat specialization in <i>Exaiptasia</i> sea anemones
Cited by: 10
Author(s): Emily S. Bellis, Reid. B. Edlund, Hazel K. Berrios, Harilaos A. Lessios, Dee R. Denver
Software Mentions: 3
Published: over 6 years ago
10.1038/s41598-018-37706-0
Epidemiological and molecular forensics of cholera recurrence in Haiti
Cited by: 16
Author(s): Stanislas Rebaudet, Sandra Moore, Emmanuel Rossignol, Hervé Bogreau, Jean Gaudart, Anne‐Cécile Normand, Marie-José Laraque, Paul Adrien, Jacques Boncy, Renaud Piarroux
Software Mentions: 3
Published: almost 6 years ago
10.3389/fpls.2019.00765
Large Scale Screening of Epichloë Endophytes Infecting Schedonorus pratensis and Other Forage Grasses Reveals a Relation Between Microsatellite-Based Haplotypes and Loline Alkaloid Levels
Cited by: 13
Author(s): Giovanni Cagnano, Niels Roulund, Christian S. Jensen, Flavia Pilar Forte, Torben Asp, Adrian Leuchtmann
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pntd.0006928
Molecular genotyping, diversity studies and high-resolution molecular markers unveiled by microsatellites in Giardia duodenalis
Cited by: 6
Author(s): Maurício Durigan, Cláudio Benício Cardoso-Silva, Maisa Ciampi‐Guillardi, Guilherme Toledo-Silva, Gustavo Maruyama Mori, Regina Maura Bueno Franco, Anete Pereira de Souza
Software Mentions: 3
Published: almost 6 years ago
10.1128/mBio.00963-20
The Frequency of Sex: Population Genomics Reveals Differences in Recombination and Population Structure of the Aflatoxin-Producing Fungus Aspergillus flavus
Cited by: 27
Author(s): Milton T. Drott, Tatum R. Satterlee, Jeffrey M. Skerker, Brandon T. Pfannenstiel, N. Louise Glass, Nancy P. Keller, Michael G. Milgroom
Software Mentions: 3
Published: about 4 years ago
10.1002/ece3.6005
Genetic diversity of the rain tree (<i>Albizia saman</i>) in Colombian seasonally dry tropical forest for informing conservation and restoration interventions
Cited by: 3
Author(s): Carolina Aguirre-Morales, Evert Thomas, Carlos Ivan Cardozo, J. P. Gutiérrez, Carolina Alcázar Caicedo, Luis Gonzalo Moscoso Higuita, Luís Augusto Becerra López-Lavalle, Mailyn González
Software Mentions: 3
Published: almost 5 years ago
10.1186/s12870-018-1576-y
SNP genotyping elucidates the genetic diversity of Magna Graecia grapevine germplasm and its historical origin and dissemination
Cited by: 35
Author(s): Gabriella De Lorenzis, Francesco Mercati, Carlo Bergamini, Maria Francesca Cardone, Antonio Lupini, Antonio Mauceri, Anna Caputo, Loredana Abbate, M Barbagallo, Donato Antonacci, Francesco Sunseri, Lucio Brancadoro
Software Mentions: 3
Published: almost 6 years ago
10.3390/plants9081035
Genetic Distinctiveness Highlights the Conservation Value of a Sicilian Manna Ash Germplasm Collection Assigned to Fraxinus angustifolia (Oleaceae)
Cited by: 6
Author(s): Loredana Abbate, Francesco Mercati, G. Noto, Myriam Heuertz, Francesco Carimi, Sergio Fatta Del Bosco, Rosario Schicchi
Software Mentions: 3
Published: over 4 years ago
10.3389/fmicb.2021.696835
Population Diversity, Dynamics, and Differentiation of Wheat Stripe Rust Pathogen Puccinia striiformis f. sp. tritici From 2010 to 2017 and Comparison With 1968 to 2009 in the United States
Cited by: 7
Author(s): Qing Bai, Anmin Wan, Meinan Wang, Deven R. See, Xianming Chen
Software Mentions: 3
Published: over 3 years ago
10.1002/ece3.2106
Peripheral genetic structure of <i>Helicoverpa zea</i> indicates asymmetrical panmixia
Cited by: 24
Author(s): Mathew Seymour, Omaththage P. Perera, Howard W. Fescemyer, R. E. Jackson, Shelby J. Fleischer, Craig A. Abel
Software Mentions: 3
Published: over 8 years ago
10.1002/ece3.8064
Disentangling complex genomic signals to understand population structure of an exploited, estuarine‐dependent flatfish
Cited by: 2
Author(s): Shannon J. O’Leary, Christopher M. Hollenbeck, Robert R. Vega, David S. Portnoy
Software Mentions: 3
Published: about 3 years ago
10.1038/s41598-017-05256-6
Postglacial range expansion and the role of ecological factors in driving adaptive evolution of Musa basjoo var. formosana
Cited by: 9
Author(s): Jui Hung Chen, Chang-Jen Huang, Yu Long Lai, Chih-Hsiung Chang, Pei Chun Liao, Shih Ying Hwang, Chih Wen Sun
Software Mentions: 3
Published: over 7 years ago
10.1186/s12862-018-1339-2
Testing the devil’s impact on southern Baltic and North Sea basins whitefish (Coregonus spp.) diversity
Cited by: 4
Author(s): Thomas Mehner, Kirsten Pohlmann, David Bittner, Jörg Freyhof
Software Mentions: 3
Published: almost 6 years ago
10.3390/plants10081619
Intraspecific Genetic Diversity of Cistus creticus L. and Evolutionary Relationships to Cistus albidus L. (Cistaceae): Meeting of the Generations?
Cited by: 3
Author(s): Brigitte Lukas, Dijana Jovanovic, Corinna Schmiderer, Stefanos Kostas, Angelos K. Kanellis, José Gómez Navarro, Zehra Aytaç, Ali Koç, Emel Sözen, Johannes Novak
Software Mentions: 3
Published: over 3 years ago
10.3389/fpls.2021.517547
Genetic Diversity and Population Structure in Bryophyte With Facultative Nannandry
Cited by: 2
Author(s): Annick S. Lang, Thies Gehrmann, Nils Cronberg
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-021-94802-4
Genetic diversity and population structure of ridge gourd (Luffa acutangula) accessions in a Thailand collection using SNP markers
Cited by: 3
Author(s): Grimar Abdiel Perez, Pumipat Tongyoo, Julapark Chunwongse, Hans de Jong, Anucha Wongpraneekul, Waraporn Sinsathapornpong, Paweena Chuenwarin
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-017-01929-4
Genetic structure of Cercospora beticola populations on Beta vulgaris in New York and Hawaii
Cited by: 22
Author(s): Niloofar Vaghefi, Scot Nelson, Julie R. Kikkert, Sarah J. Pethybridge
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-021-96331-6
Genetic homogeneity, lack of larvae recruitment, and clonality in absence of females across western Mediterranean populations of the starfish Coscinasterias tenuispina
Cited by: 1
Author(s): Rocío Pérez‐Portela, Álex García-Cisneros, Marta Campos-Canet, Creu Palacín
Software Mentions: 3
Published: over 3 years ago
10.3389/fpls.2018.00092
Adaptive Genetic Divergence Despite Significant Isolation-by-Distance in Populations of Taiwan Cow-Tail Fir (Keteleeria davidiana var. formosana)
Cited by: 20
Author(s): Kai Ming Shih, Chih-Hsiung Chang, Jeng Der Chung, Yu Chung Chiang, Shih Ying Hwang
Software Mentions: 3
Published: almost 7 years ago
10.7717/peerj.11462
The transition to agricultural cultivation of neo-crops may fail to account for wild genetic diversity patterns: insights from the Cape Floristic Region
Cited by: 0
Author(s): Nicholas C. Galuszynski
Software Mentions: 3
Published: over 3 years ago
10.1111/eva.12837
A genome‐wide investigation of the worldwide invader <i>Sargassum muticum</i> shows high success albeit (almost) no genetic diversity
Cited by: 31
Author(s): Sabrina Le Cam, Claire Daguin‐Thiébaut, Sarah Bouchemousse, Aschwin H. Engelen, Nova Mieszkowska, Frédérique Viard
Software Mentions: 3
Published: over 5 years ago
10.7717/peerj.2279
Microbe-ID: an open source toolbox for microbial genotyping and species identification
Cited by: 4
Author(s): Javier F. Tabima, Sydney E. Everhart, Meredith M. Larsen, Alexandra J. Weisberg, Zhian N. Kamvar, Matthew A. Tancos, Christine D. Smart, Jeff H. Chang, Niklaus J. Grünwald
Software Mentions: 3
Published: over 8 years ago
10.1186/s13071-020-04328-3
Molecular epidemiology of a fatal sarcoptic mange epidemic in endangered San Joaquin kit foxes (Vulpes macrotis mutica)
Cited by: 11
Author(s): Jaime L. Rudd, Deana L. Clifford, Brian L. Cypher, Joshua M. Hull, A. Jane Riner, Janet E. Foley
Software Mentions: 3
Published: about 4 years ago
10.1186/s13071-018-2760-5
Along for the ride or missing it altogether: exploring the host specificity and diversity of haemogregarines in the Canary Islands
Cited by: 12
Author(s): Beatriz Tomé, Ana Pereira, Fátima Jorge, Miguel Á. Carretero, D. James Harris, Ana Perera
Software Mentions: 3
Published: over 6 years ago
10.1111/mec.15590
Genetic evidence for the origin of <i>Aedes aegypti</i> , the yellow fever mosquito, in the southwestern Indian Ocean
Cited by: 38
Author(s): John Soghigian, Andrea Gloria‐Soria, Vincent Robert, Gilbert Le Goff, Anna‐Bella Failloux, Jeffrey R. Powell
Software Mentions: 3
Published: about 4 years ago
10.1038/s41598-020-66450-7
Range-wide genetic structure in the thorn-tailed rayadito suggests limited gene flow towards peripheral populations
Cited by: 12
Author(s): Esteban Botero‐Delgadillo, Verónica Quirici, Yanina Poblete, Matías Acevedo, Élfego Cuevas, Camila Bravo, Margherita Cragnolini, Ricardo Rozzi, Élie Poulin, Jakob C. Mueller, Bart Kempenaers, Rodrigo A. Vásquez
Software Mentions: 3
Published: over 4 years ago
10.1038/s41598-020-64779-7
Hurricane-induced disturbance increases genetic diversity and population admixture of the direct-brooding isopod, Gnathia marleyi
Cited by: 9
Author(s): J. Andrés Pagán, Ana Veríssimo, Paul C. Sikkel, Raquel Xavier
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0141830
Discovery of Genome-Wide Microsatellite Markers in Scombridae: A Pilot Study on Albacore Tuna
Cited by: 5
Author(s): Natacha Nikolic, Stéphanie Duthoy, Antoine Destombes, Nathalie Bodin, Wendy West, Alexis Puech, Jérôme Bourjea
Software Mentions: 3
Published: about 9 years ago
10.3390/genes9050262
Genomic Differentiation during Speciation-with-Gene-Flow: Comparing Geographic and Host-Related Variation in Divergent Life History Adaptation in Rhagoletis pomonella
Cited by: 61
Author(s): Meredith M. Doellman, Gregory J. Ragland, Glen R. Hood, Peter J. Meyers, Scott P. Egan, Thomas H. Q. Powell, Peter Lazorchak, Mary M. Glover, Cheyenne Tait, Hannes Schuler, Daniel A. Hahn, Stewart H. Berlocher, James J. Smith, Patrik Nosil, Jeffrey L. Feder
Software Mentions: 3
Published: over 6 years ago
10.1534/g3.120.401187
Genetic Diversity and Population Structure of Races of <i>Fusarium oxysporum</i> Causing Cotton Wilt
Cited by: 16
Author(s): Hannah C Halpern, Peng Qi, Robert C. Kemerait, Marin Talbot Brewer
Software Mentions: 3
Published: about 4 years ago
10.3389/fpls.2019.00531
Target SSR-Seq: A Novel SSR Genotyping Technology Associate With Perfect SSRs in Genetic Analysis of Cucumber Varieties
Cited by: 34
Author(s): Jingjing Yang, Jian Zhang, Ruixi Han, Feng Zhang, Aijun Mao, Jianxun Luo, Bobo Dong, Hui Liu, Hao Tang, Jianan Zhang, Changlong Wen
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pone.0218993
Examining population structure of a bertha armyworm, Mamestra configurata (Lepidoptera: Noctuidae), outbreak in western North America: Implications for gene flow and dispersal
Cited by: 2
Author(s): Martin A. Erlandson, Boyd A. Mori, Cathy Coutu, Jennifer Holowachuk, O. Olfert, Tara D. Gariépy, Dwayne D. Hegedus
Software Mentions: 3
Published: over 5 years ago
10.1186/s12864-018-4751-5
Genomic evidence for intraspecific hybridization in a clonal and extremely halotolerant yeast
Cited by: 33
Author(s): Cene Gostinčar, Jason E. Stajich, Jerneja Zupančič, Polona Zalar, Nina Gunde‐Cimerman
Software Mentions: 3
Published: over 6 years ago
10.3390/genes12081279
Population Genomics Reveals Gene Flow and Adaptive Signature in Invasive Weed Mikania micrantha
Cited by: 0
Author(s): Xiaoxian Ruan, Zhen Wang, Yingjuan Su, Ting Wang
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-019-51950-y
High fusibility and chimera prevalence in an invasive colonial ascidian
Cited by: 7
Author(s): Maria Casso, Davide Tagliapietra, Xavier Turon, Marta Pascual
Software Mentions: 3
Published: about 5 years ago
10.1371/journal.pone.0207519
Discontinuities in quinoa biodiversity in the dry Andes: An 18-century perspective based on allelic genotyping
Cited by: 10
Author(s): Thierry Winkel, María Gabriela Aguirre, Carla Marcela Arizio, Carlos Aschero, María del Pilar Babot, Laure Benoit, Concetta Burgarella, Sabrina M Costa-Tártara, Marie‐Pierre Dubois, Laurène Gay, Salomón Hocsman, Margaux Jullien, Sara María Luisa López Campeny, María Marcela Manifesto, Miguel Navascués, Nurit Oliszewski, Elizabeth Pintar, Saliha Zenboudji, Héctor Daniel Bertero, Richard Joffre
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pone.0177742
Using NextRAD sequencing to infer movement of herbivores among host plants
Cited by: 18
Author(s): Zhen F. Fu, Brendan Epstein, Joanna L. Kelley, Qi Zheng, Alan O. Bergland, Carmen I. Castillo Carrillo, Andrew S. Jensen, Jennifer Dahan, Alexander V. Karasev, William E. Snyder
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pone.0203737
Psidium guajava in the Galapagos Islands: Population genetics and history of an invasive species
Cited by: 27
Author(s): Diego Urquía, Bernardo Gutierrez, Gabriela Pozo, Marı́a J. Pozo, Analía Espín, María de Lourdes Torres
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pone.0255326
Collection, genotyping and virus elimination of cassava landraces from Tanzania and documentation of farmer knowledge
Cited by: 3
Author(s): Morag Ferguson, Silver Tumwegamire, Charity Chidzanga, Trushar Shah, K. Mtunda, Heneriko Kulembeka, Bernadetta Kimata, S. Tollano, Mary Stephen, E. Mpayo, S. Mohamedi, Kasele Salum, E. Palangyo, J. Armachius, Abdullah Ali, Karoline Sichalwe, Dwasi Gambo Matondo, Festo Frank Masisila, Z. Matumbo, B. Kidunda, A. C. Arati, R. Muiruri, Florence Munguti, Adebayo Abass, Michael T. Abberton, Geoffrey Mkamilo
Software Mentions: 3
Published: over 3 years ago
10.3390/ijms22179457
Molecular Characterization of Wheat Stripe Rust Pathogen (Puccinia striiformis f. sp. tritici) Collections from Nine Countries
Cited by: 11
Author(s): Qing Bai, Anmin Wan, Meinan Wang, Deven R. See, Xianming Chen
Software Mentions: 2
Published: about 3 years ago
10.3390/ani11010241
Identification of Target Chicken Populations by Machine Learning Models Using the Minimum Number of SNPs
Cited by: 8
Author(s): Dongwon Seo, Sunghyun Cho, Prabuddha Manjula, Na Young Choi, Young-Kuk Kim, Yeong Jun Koh, Seung Hwan Lee, Hyung-Yong Kim, Jun Heon Lee
Software Mentions: 2
Published: almost 4 years ago
10.1093/aobpla/plz080
Genet assignment and population structure analysis in a clonal forest-floor herb, Cardamine leucantha, using RAD-seq
Cited by: 8
Author(s): Munekazu Tsujimoto, Kiwako S. Araki, Mie N. Honjo, Masaki Yasugi, Atsushi J. Nagano, Satoru Akama, Masaomi Hatakeyama, Rie Shimizu‐Inatsugi, Jun Sese, Kentaro Shimizu, Hiroshi Kudoh
Software Mentions: 2
Published: almost 5 years ago
10.1186/s12864-020-06829-y
Population genomics of Vibrionaceae isolated from an endangered oasis reveals local adaptation after an environmental perturbation
Cited by: 6
Author(s): Mirna Vázquez-Rosas-Landa, Gabriel Yaxal Ponce-Soto, Jonás A. Aguirre‐Liguori, Shalabh Thakur, Enrique Scheinvar, Josué Barrera‐Redondo, Enrique Ibarra-Laclette, David S. Guttman, Luis E. Eguiarte, Valeria Souza
Software Mentions: 2
Published: over 4 years ago
10.1186/s12864-021-07662-7
Single nucleotide polymorphisms reveal genetic diversity in New Mexican chile peppers (Capsicum spp.)
Cited by: 11
Author(s): Dennis N. Lozada, Madhav Bhatta, Danise Coon, Paul W. Bosland
Software Mentions: 2
Published: over 3 years ago
10.1111/1751-7915.12324
Environmental distribution and genetic diversity of vegetative compatibility groups determine biocontrol strategies to mitigate aflatoxin contamination of maize by <scp> <i>A</i> </scp> <i>spergillus flavus</i>
Cited by: 57
Author(s): Joseph Atehnkeng, Matthias Donner, Peter S. Ojiambo, B. Ikotun, João Augusto, Peter J. Cotty, Ranajit Bandyopadhyay
Software Mentions: 2
Published: about 9 years ago
10.3390/microorganisms8010098
Differential Genotyping of Mycobacterium avium Complex and Its Implications in Clinical and Environmental Epidemiology
Cited by: 18
Author(s): Jeong Ih Shin, Sung Jae Shin, Min Kyoung Shin
Software Mentions: 2
Published: almost 5 years ago
10.7717/peerj.5462
Contrasting gene flow at different spatial scales revealed by genotyping-by-sequencing in<i>Isocladus armatus</i>, a massively colour polymorphic New Zealand marine isopod
Cited by: 17
Author(s): Sarah J. Wells, James Dale
Software Mentions: 2
Published: over 6 years ago
10.7717/peerj.11568
Genetic connectivity between Atlantic bluefin tuna larvae spawned in the Gulf of Mexico and in the Mediterranean Sea
Cited by: 4
Author(s): Carolina Johnstone, Montse Pérez, Estrella Malca, José María Suárez Quintanilla, Trika Gerard, Diego Lozano-Peral, Francisco Alemany, John T. Lamkin, A. García, Raúl Láiz-Carrión
Software Mentions: 2
Published: over 3 years ago
10.7717/peerj.10042
Conservation genomics and pollination biology of an endangered, edaphic-endemic, octoploid herb: El Dorado bedstraw (Galium californicumsubsp.sierrae; Rubiaceae)
Cited by: 1
Author(s): Dylan O. Bürge
Software Mentions: 2
Published: about 4 years ago
10.7717/peerj.3266
Analysis of microsatellites from the transcriptome of downy mildew pathogens and their application for characterization of<i>Pseudoperonospora</i>populations
Cited by: 22
Author(s): E. C. Wallace, Lina M. Quesada‐Ocampo
Software Mentions: 2
Published: over 7 years ago
10.3390/plants10030487
Development and Characterization of 15 Novel Genomic SSRs for Viburnum farreri
Cited by: 4
Author(s): Trinity P. Hamm, Marcin Nowicki, Sarah L. Boggess, William E. Klingeman, Denita Hadziabdic, Matthew Huff, Margaret Staton, Robert N. Trigiano
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0173915
Independently founded populations of Sclerotinia sclerotiorum from a tropical and a temperate region have similar genetic structure
Cited by: 26
Author(s): Miller da Silva Lehner, Trazilbo José de Paula Júnior, Emerson M. Del Ponte, Eduardo S. G. Mizubuti, Sarah J. Pethybridge
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0209572
Contrasting fine-scale genetic structure of two sympatric clonal plants in an alpine swampy meadow featured by tussocks
Cited by: 3
Author(s): Yu Ning, Guanghua Wu, Hua Ma, Ju-Lan Guo, Manyin Zhang, Wei Li, Yifei Wang, Suo-Lang Duoerji
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0211616
Molecular characterization of Bathymodiolus mussels and gill symbionts associated with chemosynthetic habitats from the U.S. Atlantic margin
Cited by: 12
Author(s): D. Katharine Coykendall, Robert S. Cornman, Nancy G. Prouty, Sandra Brooke, Amanda W.J. Demopoulos, Cheryl L. Morrison
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0198593
Highly structured genetic diversity of Bixa orellana var. urucurana, the wild ancestor of annatto, in Brazilian Amazonia
Cited by: 12
Author(s): Gabriel Dequigiovanni, Santiago Linório Ferreyra Ramos, Alessandro Alves‐Pereira, Eliane Gomes Fabri, Doriane Picanço Rodrigues, Charles R. Clement, Paul Gepts, Elizabeth Ann Veasey
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0165690
Genetic Variation within Clonal Lineages of Phytophthora infestans Revealed through Genotyping-By-Sequencing, and Implications for Late Blight Epidemiology
Cited by: 22
Author(s): Zachariah R. Hansen, Kathryne L. Everts, William E. Fry, A. J. Gevens, Niklaus J. Grünwald, Beth K. Gugino, Dennis A. Johnson, Steven B. Johnson, Howard S. Judelson, Brian J. Knaus, M. T. McGrath, Kevin Myers, Jean Beagle Ristaino, Pamela D. Roberts, Gary A. Secor, Christine D. Smart
Software Mentions: 2
Published: about 8 years ago
10.1371/journal.pone.0205407
Haplotyping of Cornus florida and C. kousa chloroplasts: Insights into species-level differences and patterns of plastic DNA variation in cultivars
Cited by: 5
Author(s): Marcin Nowicki, Sarah L. Boggess, Arnold M. Saxton, Ðenita Hadziabdic, Qiu-Yun Jenny Xiang, Thomas J. Molnar, Matthew Huff, Margaret Staton, Yichen Zhao, Robert N. Trigiano
Software Mentions: 2
Published: about 6 years ago
10.2135/cropsci2017.11.0695
Gene Pool Subdivision of East African Sweetpotato Parental Material
Cited by: 24
Author(s): Maria David, Federico Díaz, R.O.M. Mwanga, Silver Tumwegamire, Roberto Mansilla, Wolfgang J. Grüneberg
Software Mentions: 2
Published: about 6 years ago
10.1002/ece3.4714
Porous barriers? Assessment of gene flow within and among sympatric long‐eared bat species
Cited by: 11
Author(s): Tommy Andriollo, Sohrab Ashrafi, Raphaël Arlettaz, Manuel Rüedi
Software Mentions: 2
Published: almost 6 years ago
10.1002/ece3.3001
Genetic identification of source and likely vector of a widespread marine invader
Cited by: 53
Author(s): Stacy A. Krueger‐Hadfield, Nicole M. Kollars, Allan E. Strand, James E. Byers, Sarah J. Shainker, Ryuta Terada, Thomas W. Greig, Mareike Hammann, David C. Murray, Florian Weinberger, Erik E. Sotka
Software Mentions: 2
Published: over 7 years ago
10.1111/eva.13078
Genetic structure across urban and agricultural landscapes reveals evidence of resource specialization and philopatry in the Eastern carpenter bee, <i>Xylocopa virginica</i> L.
Cited by: 12
Author(s): Kimberly M. Ballare, Shalene Jha
Software Mentions: 2
Published: about 4 years ago
10.1111/eva.13186
The ghosts of propagation past: haplotype information clarifies the relative influence of stocking history and phylogeographic processes on contemporary population structure of walleye ( <i>Sander vitreus</i> )
Cited by: 12
Author(s): Matthew Bootsma, Loren M. Miller, Greg G. Sass, Peter T. Euclide, Wesley A. Larson
Software Mentions: 2
Published: almost 4 years ago
10.1111/eva.12971
Multiple invasions of a generalist herbivore—Secondary contact between two divergent lineages of <i>Nezara viridula</i> Linnaeus in Australia
Cited by: 5
Author(s): Dean R. Brookes, James Hereward, Lewis Wilson, Gimme H. Walter
Software Mentions: 2
Published: over 4 years ago
10.3389/fgene.2021.688323
Conservation Genomics of Wild Red Sage (Salvia miltiorrhiza) and Its Endangered Relatives in China: Population Structure and Interspecific Relationships Revealed From 2b-RAD Data
Cited by: 5
Author(s): Xuan Zhou, Zhicheng Zhang, Yanbo Huang, Hanwen Xiao, Junjie Wu, Zhe-Chen Qi, Yukun Wei
Software Mentions: 2
Published: over 3 years ago
10.3389/fmicb.2020.575045
The Climate-Driven Genetic Diversity Has a Higher Impact on the Population Structure of Plasmopara viticola Than the Production System or QoI Fungicide Sensitivity in Subtropical Brazil
Cited by: 4
Author(s): R. F. Santos, Maísa Ciampi-Guillardi, Bart A. Fraaije, Amanda Almeida de Oliveira, Lílian Amorim
Software Mentions: 2
Published: about 4 years ago
10.3389/fmicb.2020.01280
Genetic Structure of the Norwegian Parastagonospora nodorum Population
Cited by: 9
Author(s): Min Lin, Andrea Ficke, James Cockram, Morten Lillemo
Software Mentions: 2
Published: over 4 years ago
10.3389/fpls.2016.01334
Genetic Distinctiveness of Rye In situ Accessions from Portugal Unveils a New Hotspot of Unexplored Genetic Resources
Cited by: 15
Author(s): Filipa Monteiro, Patrícia Vidigal, André Barros, A. Monteiro, Hugo R. Oliveira, Wanda Viegas
Software Mentions: 2
Published: about 8 years ago
10.3389/fpls.2019.01785
Low Amplitude Boom-and-Bust Cycles Define the Septoria Nodorum Blotch Interaction
Cited by: 13
Author(s): H. Phan, Darcy A. B. Jones, Kasia Rybak, Kejal N Dodhia, Francisco J. López-Ruiz, Romain Valade, Lilian Gout, Marc‐Henri Lebrun, Patrick C. Brunner, Richard P. Oliver, Kar‐Chun Tan
Software Mentions: 2
Published: almost 5 years ago
10.3390/genes12030322
Autochthonous Austrian Varieties of Prunus avium L. Represent a Regional Gene Pool, Assessed Using SSR and AFLP Markers
Cited by: 5
Author(s): Elisabeth Schüller, Felicidad Fernández Fernández, Laima Antanaviciute, Ulrike C. M. Anhalt-Brüderl, A. Spornberger, Astrid Forneck
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.ppat.1008731
Genetic analysis reveals long-standing population differentiation and high diversity in the rust pathogen Melampsora lini
Cited by: 6
Author(s): Hanna Susi, Jeremy J. Burdon, Peter H. Thrall, Adnane Nemri, Luke G. Barrett
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-017-12938-8
Genomics of extreme ecological specialists: multiple convergent evolution but no genetic divergence between ecotypes of Maculinea alcon butterflies
Cited by: 11
Author(s): Darina Koubínová, Vlad Dincă, Leonardo Dapporto, Raluca Vodă, Tomasz Suchan, Roger Vila, Nadir Alvarez
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-018-22192-1
Large sub-clonal variation in Phytophthora infestans from recent severe late blight epidemics in India
Cited by: 38
Author(s): T. K. Dey, Amanda Saville, Kevin Myers, Susanta Tewari, D. E. L. Cooke, Sucheta Tripathy, William E. Fry, Jean Beagle Ristaino, Sanjoy Guha Roy
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-31130-0
Dynamic colonization history in a rediscovered Isle Royale carnivore
Cited by: 6
Author(s): Philip J. Manlick, Mark C. Romanski, Jonathan N. Pauli
Software Mentions: 2
Published: about 6 years ago
10.1038/s41598-019-54715-9
Population genomics of two congeneric Palaearctic shorebirds reveals differential impacts of Quaternary climate oscillations across habitats types
Cited by: 10
Author(s): Hui Zhen Tan, Elize Y. X. Ng, Qian Tang, Gary Allport, Justin J. F. J. Jansen, Pavel S. Tomkovich, Frank E. Rheindt
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-020-69665-w
Genetic tropicalisation following a marine heatwave
Cited by: 39
Author(s): Melinda A. Coleman, Antoine J. P. Minne, Sofie Vranken, Thomas Wernberg
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-72112-5
Population genetic structure of the great star coral, Montastraea cavernosa, across the Cuban archipelago with comparisons between microsatellite and SNP markers
Cited by: 14
Author(s): Alexis B. Sturm, Ryan J. Eckert, Juliett González Méndez, Patricia González‐Díaz, Joshua D. Voss
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-73279-7
Quantifying the effect of human practices on S. cerevisiae vineyard metapopulation diversity
Cited by: 2
Author(s): Marine Börlin, Olivier Claisse, Warren Albertin, Franck Salin, Jean Luc Legras, Isabelle Masneuf‐Pomarède
Software Mentions: 2
Published: about 4 years ago