Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: pomp
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/pomp
Statistical Inference for Partially Observed Markov Processes
111 versions
Latest release: over 1 year ago
7 dependent packages
1,936 downloads last month
Papers Mentioning pomp 19
10.1371/journal.pone.0185528
tsiR: An R package for time-series Susceptible-Infected-Recovered models of epidemicsCited by: 38
Author(s): Alexander D. Becker, Bryan T. Grenfell
Software Mentions: 8
Published: about 7 years ago
10.1371/journal.pcbi.1007305
Long-term dynamics of measles in London: Titrating the impact of wars, the 1918 pandemic, and vaccinationCited by: 13
Author(s): Alexander D. Becker, Amy Wesolowski, Ottar N. Bjørnstad, Bryan T. Grenfell
Software Mentions: 6
Published: over 5 years ago
10.1371/journal.pcbi.1006646
Epithelial stratification shapes infection dynamicsCited by: 11
Author(s): Carmen Lía Murall, Robert Jackson, Ingeborg Zehbe, Nathalie Boulle, Michel Segondy, Samuel Alizon
Software Mentions: 5
Published: almost 6 years ago
10.1186/s12976-017-0063-8
Forecasting infectious disease emergence subject to seasonal forcingCited by: 27
Author(s): Paige B. Miller, Eamon B. O’Dea, Pejman Rohani, John M. Drake
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pcbi.1006710
An agent-based model of dengue virus transmission shows how uncertainty about breakthrough infections influences vaccination impact projectionsCited by: 30
Author(s): T. Alex Perkins, Robert C. Reiner, Guido España, Quirine A. ten Bosch, Amit Verma, Kelly A. Liebman, Valerie A. Paz-Soldán, John P. Elder, Amy C. Morrison, Steven T. Stoddard, Uriel Kitron, Gonzalo M. Vazquez‐Prokopec, Thomas W. Scott, David L. Smith
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pcbi.1006204
Anticipating epidemic transitions with imperfect dataCited by: 25
Author(s): Tobias Brett, Eamon B. O’Dea, Éric Marty, Paige B. Miller, Andrew Park, John M. Drake, Pejman Rohani
Software Mentions: 3
Published: over 6 years ago
10.1371/journal.pntd.0007482
Model-based assessment of public health impact and cost-effectiveness of dengue vaccination following screening for prior exposureCited by: 24
Author(s): Guido España, Yutong Yao, Kathryn B. Anderson, Meagan C. Fitzpatrick, David L. Smith, Amy C. Morrison, Annelies Wilder‐Smith, Thomas W. Scott, T. Alex Perkins
Software Mentions: 3
Published: over 5 years ago
10.12688/f1000research.10624.3
Dose Titration Algorithm Tuning (DTAT) should supersede ‘the’ Maximum Tolerated Dose (MTD) in oncology dose-finding trialsCited by: 6
Author(s): David C. Norris
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pone.0198563
Maternal antibody and the maintenance of a lyssavirus in populations of seasonally breeding African batsCited by: 16
Author(s): David T. S. Hayman, Angela D. Luis, Olivier Restif, Kate S. Baker, Anthony R. Fooks, Clinton B. Leach, Daniel L. Horton, Richard Suu‐Ire, Andrew A. Cunningham, James L. N. Wood, Colleen T. Webb
Software Mentions: 3
Published: over 6 years ago
10.1186/1471-2334-13-187
Limits of patient isolation measures to control extended-spectrum beta-lactamase–producing Enterobacteriaceae: model-based analysis of clinical data in a pediatric wardCited by: 27
Author(s): Matthieu Domenech de Cellès, Jean‐Ralph Zahar, Véronique Abadie, Didier Guillemot
Software Mentions: 2
Published: over 11 years ago
10.1093/infdis/jiz644
Impact of Changes in Detection Effort on Control of Visceral Leishmaniasis in the Indian SubcontinentCited by: 12
Author(s): Luc E. Coffeng, Epke A. Le Rutte, Johanna Muñoz, Emily R. Adams, Joaquín M. Prada, Sake J. de Vlas, Graham F. Medley
Software Mentions: 2
Published: about 5 years ago
10.1186/s12879-018-3124-7
Summary results of the 2014-2015 DARPA Chikungunya challengeCited by: 35
Author(s): Sara Y. Del Valle, Benjamin H. McMahon, Jason Asher, Richard Hatchett, J. Lega, Heidi E. Brown, Mark E. Leany, Yannis Pantazis, David J. Roberts, Sean M. Moore, A. Townsend Peterson, Luis E. Escobar, Huijie Qiao, Nicholas Hengartner, Harshini Mukundan
Software Mentions: 2
Published: over 6 years ago
10.1093/biostatistics/kxy057
Model selection and parameter estimation for dynamic epidemic models via iterated filtering: application to rotavirus in GermanyCited by: 32
Author(s): Theresa Stocks, Tom Britton, Michael Höhle
Software Mentions: 2
Published: about 6 years ago
10.1093/cid/ciab210
Antibody and Antigen Prevalence as Indicators of Ongoing Transmission or Elimination of Visceral Leishmaniasis: A Modeling StudyCited by: 6
Author(s): Luc E. Coffeng, Epke A. Le Rutte, Johanna Muñoz, Emily Adams, Sake J. de Vlas
Software Mentions: 2
Published: over 3 years ago
10.1038/srep11293
Interaction of Vaccination and Reduction of Antibiotic Use Drives Unexpected Increase of Pneumococcal MeningitisCited by: 13
Author(s): Matthieu Domenech de Cellès, Margarita Pons-Salort, Emmanuelle Varon, Marie-Anne Vibet, Caroline Ligier, Véronique Letort, Lulla Opatowski, Didier Guillemot
Software Mentions: 2
Published: over 9 years ago
10.1007/s12080-018-0390-3
Disentangling reporting and disease transmissionCited by: 16
Author(s): Eamon B. O’Dea, John M. Drake
Software Mentions: 2
Published: over 6 years ago
10.1093/trstmh/trab012
Modelling the impact of COVID-19-related programme interruptions on visceral leishmaniasis in IndiaCited by: 17
Author(s): Epke A. Le Rutte, Luc E. Coffeng, Johanna Muñoz, Sake J. de Vlas
Software Mentions: 2
Published: almost 4 years ago
10.1101/2020.05.03.20089078
The impact of long-term non-pharmaceutical interventions on COVID-19 epidemic dynamics and controlCited by: 18
Author(s): Marissa L. Childs, Morgan P. Kain, Dudley Kirk, Mallory Harris, Lisa I. Couper, Nicole Nova, Isabel Delwel, Jacob Ritchie, Erin A. Mordecai
Software Mentions: 2
Published: over 4 years ago
10.1101/2020.06.30.20143115
Chopping the tail: how preventing superspreading can help to maintain COVID-19 controlCited by: 14
Author(s): Morgan P. Kain, Marissa L. Childs, Alexander D. Becker, Erin A. Mordecai
Software Mentions: 2
Published: over 4 years ago