Projects: cran: polyRAD
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/polyRAD
Genotype Calling with Uncertainty from Sequencing Data in
Polyploids and Diploids
9 versions
Latest release: over 3 years ago
1 dependent package
315 downloads last month
Enhanced Analysis
Educational Contributors:
lvclark@illinois.edu
Repository Activity:
Repository Owner:
Lindsay Clark (user)
Computational biologist at Seattle Children's. Lots of prior work in plant genetics, population genetics, and polyploidy.
Computational biologist at Seattle Children's. Lots of prior work in plant genetics, population genetics, and polyploidy.
README Analysis:
DOI Found
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+20
Educational commit emails
1 contributors with educational email addresses -
+16
Science terms in README
8 scientific terms found in README -
+30
DOI references
3 DOI references found in README
Penalties:
-
-15
No science keywords
No scientific terms found in keywords/classifiers
Very Likely Science (100)
Papers Mentioning polyRAD 4
10.1534/g3.118.200913
polyRAD: Genotype Calling with Uncertainty from Sequencing Data in Polyploids and DiploidsCited by: 59
Author(s): Lindsay V. Clark, Alexander E. Lipka, Erik J. Sacks
Software Mentions: 7
Published: over 7 years ago
10.1534/g3.120.401402
Training Population Optimization for Genomic Selection in <i>Miscanthus</i>Cited by: 21
Author(s): Marcus O. Olatoye, Lindsay V. Clark, Nicholas R. LaBonte, Hongxu Dong, Maria Stefanie Dwiyanti, Kossonou Guillaume Anzoua, Joe E. Brummer, Bimal Kumar Ghimire, Elena Dzyubenko, N. I. Dzyubenko, Л. В. Багмет, Andrey Sabitov, Pavel Chebukin, Katarzyna Głowacka, Kweon Heo, Xiaoli Jin, Hironori Nagano, Junhua Peng, Chang Yeon Yu, Ji Hye Yoo, Hua Zhao, Stephen P. Long, Toshihiko Yamada, Erik J. Sacks, Alexander E. Lipka
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-021-86176-4
Genetic basis and identification of candidate genes for wooden breast and white striping in commercial broiler chickensCited by: 22
Author(s): Juniper A. Lake, Jack C. M. Dekkers, Behnam Abasht
Software Mentions: 2
Published: about 5 years ago
10.1186/s40104-019-0315-z
Improving genomic predictions by correction of genotypes from genotyping by sequencing in livestock populationsCited by: 8
Author(s): Xiao Wang, Mogens Sandø Lund, Peipei Ma, Luc Janss, Haja N. Kadarmideen, Guosheng Su
Software Mentions: 1
Published: over 7 years ago