Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: plink
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/plink
IRT Separate Calibration Linking Methods
29 versions
Latest release: over 7 years ago
4 dependent packages
1,789 downloads last month
Papers Mentioning plink 399
10.1186/s12920-020-0675-4
An integrative, genomic, transcriptomic and network-assisted study to identify genes associated with human cleft lip with or without cleft palateCited by: 14
Author(s): Fangfang Yan, Yulin Dai, Junichi Iwata, Zhongming Zhao, Peilin Jia
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pgen.1002554
Development of a Panel of Genome-Wide Ancestry Informative Markers to Study Admixture Throughout the AmericasCited by: 217
Author(s): Joshua Galanter, Juan Carlos Fernández-López, Christopher R. Gignoux, Jill S. Barnholtz‐Sloan, Ceres Fernández–Rozadilla, Marc Via, Alfredo Hidalgo-Miranda, Alejandra Contreras, Laura Figueroa, Paola Raska, Gerardo Jiménez‐Sánchez, Irma Silva Zolezzi, M. Torres, Clara Ruiz Ponte, Y. Ruiz, Antonio Salas, Elizabeth A. Nguyen, Celeste Eng, Lisbeth Borjas, William Zabala, Guillermo Barreto, Fernando Rondóo González, A. Ibarra, Patricia Taboada, L. Porras, Fabián Moreno, Abigail W. Bigham, Gerardo Gutiérrez, Tom D. Brutsaert, Fabiola León‐Velarde, Lorna G. Moore, Enrique Vargas, Miguel Cruz, Jorge Escobedo, José Rodríguez‐Santana, William Rodríguez-Cintrón, Rocío Chapela, Jean G. Ford, Carlos D. Bustamante, Daniela Seminara, Mark D. Shriver, Elad Ziv, Esteban G. Burchard, Robert W. Haile, Esteban J. Parra, Ángel Carracedo
Software Mentions: 2
Published: over 12 years ago
10.1038/s41598-019-53445-2
An exome-wide rare variant analysis of Korean men identifies three novel genes predisposing to prostate cancerCited by: 6
Author(s): Jong Jin Oh, Manu Shivakumar, Jason E. Miller, Shefali S. Verma, Hakmin Lee, Sung Kyu Hong, Sang Eun Lee, Younghee Lee, Soo Ji Lee, Joohon Sung, Dokyoon Kim, Seok Soo Byun
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.pgen.1003419
Genome-Wide Testing of Putative Functional Exonic Variants in Relationship with Breast and Prostate Cancer Risk in a Multiethnic PopulationCited by: 65
Author(s): Christopher A. Haiman, Ying Han, Yang Feng, Lucy Xia, Chris Hsu, Xin Sheng, Loreall Pooler, Yesha Patel, Laurence N. Kolonel, Erin Carter, Karen Park, Loı̈c Le Marchand, David Van Den Berg, Brian E. Henderson, Daniel O. Stram
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pgen.1006651
A de novo variant in the ASPRV1 gene in a dog with ichthyosisCited by: 31
Author(s): Anina Bauer, Dominik P. Waluk, Arnaud Galichet, Katrin Timm, Vidhya Jagannathan, Beyza Sayar, Dominique J Wiener, Elisabeth Dietschi, Eliane J. Müller, Petra Roosje, Monika Maria Welle, Tosso Leeb
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pgen.1007098
Selection for long and short sleep duration in Drosophila melanogaster reveals the complex genetic network underlying natural variation in sleepCited by: 38
Author(s): Susan T Harbison, Yazmin L. Serrano Negron, Nancy F. Hansen, Amanda Lobell
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pgen.1002655
Evidence of Inbreeding Depression on Human HeightCited by: 80
Author(s): Ruth McQuillan, Niina Eklund, Nicola Pirastu, Maris Kuningas, Brian McEvoy, Tõnu Esko, Tanguy Corre, Gail Davies, Marika Kaakinen, Leo-Pekka Lyytikäinen, Kati Kristiansson, Aki S. Havulinna, Martin Gögele, Véronique Vitart, Albert Tenesa, Yurii S. Aulchenko, Caroline Hayward, Åsa Johansson, Mladen Boban, Sheila Ulivi, Antonietta Robino, Vesna Boraska, Wilmar Igl, Sarah H. Wild, Lina Zgaga, Najaf Amin, Evropi Τheodoratou, Ozren Polašek, Giorgia Girotto, Lorna M. Lopez, Cinzia Sala, Jari Lahti, Tiina Laatikainen, Inga Prokopenko, Mart Kals, Jorma Viikari, Jian Yang, Anneli Pouta, Karol Estrada, Albert Hofman, Nelson B. Freimer, Nicholas G. Martin, Mika Kähönen, Lili Milani, Markku Heliövaara, Erkki Vartiainen, Katri Räikkönen, Corrado Masciullo, John M. Starr, Andrew A. Hicks, Laura Esposito, Ivana Kolčić, Susan M. Farrington, Ben A. Oostra, Tatijana Zemunik, Harry Campbell, Mirna Kirin, Marina Pehlić, Flavio Faletra, David J. Porteous, Giorgio Pistis, Elisabeth Widén, Veikko Salomaa, Seppo Koskinen, Krista Fischer, Terho Lehtimäki, Andrew C. Heath, Mark I. McCarthy, Fernando Rivadeneira, Grant W. Montgomery, Henning Tiemeier, Anna-Liisa Hartikainen, Pamela A. F. Madden, Pio D’Adamo, Nicholas D. Hastie, Ulf Gyllensten, Alan F. Wright, Cornelia M. van Duijn, Malcolm G. Dunlop, Igor Rudan, Paolo Gasparini, Peter P. Pramstaller, Ian J. Deary, Daniela Toniolo, Johan G. Eriksson, Antti Jula, Olli T. Raitakari, Andres Metspalu, Markus Perola, Marjo‐Riitta Järvelin, André G. Uitterlinden, Peter M. Visscher, James F. Wilson
Software Mentions: 2
Published: over 12 years ago
10.1371/journal.pgen.1005728
Genome-Wide Scan Informed by Age-Related Disease Identifies Loci for Exceptional Human LongevityCited by: 113
Author(s): Kristen Fortney, Edgar Dobriban, Paolo Garagnani, Chiara Pirazzini, Daniela Monti, Daniela Mari, Gil Atzmon, Nir Barzilai, Claudio Franceschi, Art B. Owen, Stuart K. Kim
Software Mentions: 2
Published: almost 9 years ago
10.1186/s12920-021-00953-8
Gene variants associated with acne vulgaris presentation and severity: a systematic review and meta-analysisCited by: 17
Author(s): Anna Hwee Sing Heng, Yee‐How Say, Yang Yie Sio, Yu Ting Ng, Fook Tim Chew
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pntd.0007283
Association between IL1 gene polymorphism and human African trypanosomiasis in populations of sleeping sickness foci of southern CameroonCited by: 1
Author(s): Elvis Ofon, Harry Noyes, Vincent Ebo’o Eyanga, Flobert Njiokou, Mathurin Koffi, Pythagore Soubgwi Fogue, Christiane Hertz‐Fowler, Annette MacLeod, Enock Matovu, Gustave Simo
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-019-56496-7
Metabolic GWAS of elite athletes reveals novel genetically-influenced metabolites associated with athletic performanceCited by: 25
Author(s): Fatima Al‐Khelaifi, Ilhame Diboun, Francesco Donati, Francesco Botrè, David Abraham, Aroon D. Hingorani, Omar Albagha, Costas Georgakopoulos, Karsten Suhre, Noha A. Yousri, Mohamed A. Elrayess
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pone.0222506
NGS analysis in Marfan syndrome spectrum: Combination of rare and common genetic variants to improve genotype-phenotype correlation analysisCited by: 17
Author(s): Davide Gentilini, Antonino Oliveri, Teresa Fazia, Alessandro Pini, Susan Marelli, Luisa Bernardinelli, Anna Maria Di Blasio
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.pone.0126113
Drug Metabolizing Enzyme and Transporter Gene Variation, Nicotine Metabolism, Prospective Abstinence, and Cigarette ConsumptionCited by: 19
Author(s): Andrew W. Bergen, Martha Michel, Denise Nishita, Ruth E. Krasnow, Harold S. Javitz, Karen N. Conneely, Christina N. Lessov‐Schlaggar, Hyman Hops, Andy Z.X. Zhu, James W. Baurley, Jennifer B. McClure, Sharon M. Hall, Timothy B. Baker, David V. Conti, Neal L. Benowitz, Caryn Lerman, Rachel F. Tyndale, Gary E. Swan
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0131091
Genome Wide Association Study for Predictors of Progression Free Survival in Patients on Capecitabine, Oxaliplatin, Bevacizumab and Cetuximab in First-Line Therapy of Metastatic Colorectal CancerCited by: 13
Author(s): Jan Pander, Lieke van Huis-Tanja, Stefan Böhringer, Tahar van der Straaten, Hans Gelderblom, Cornelis J.A. Punt, Henk‐Jan Guchelaar
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0143873
Analysis of Genetic and Non-Genetic Factors Influencing Timing and Time PerceptionCited by: 36
Author(s): Alex J. Bartholomew, Warren H. Meck, Elizabeth T. Cirulli
Software Mentions: 2
Published: almost 9 years ago
10.1371/journal.pone.0064408
Association of Genetic Markers with CSF Oligoclonal Bands in Multiple Sclerosis PatientsCited by: 27
Author(s): Maurizio Leone, Nadia Barizzone, Federica Esposito, Ausiliatrice Lucenti, Hanne F. Harbo, An Goris, Ingrid Kockum, Annette Bang Oturai, Elisabeth Gulowsen Celius, Inger Lise Mero, Bénédicte Dubois, Tomas Olsson, Helle Bach Søndergaard, Daniele Cusi, Sara Lupoli, Bettina Kulle Andreassen, Kjell‐Morten Myhr, Franca Rosa Guerini, Giancarlo Comi, Filippo Martinelli Boneschi, Sandra D’Alfonso
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pone.0255311
Targeted capture sequencing identifies genetic variations of GRK4 and RDH8 in Han Chinese with essential hypertension in XinjiangCited by: 3
Author(s): Wenxi Jiang, Xizi Wang, Ronghui Li, Panpan Wang, Guangle Shan, Xiaodong Jia, Minghong Gu
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0040107
Common Variants on Chromosome 9p21 Are Associated with Normal Tension GlaucomaCited by: 57
Author(s): Masao Takamoto, Toshikatsu Kaburaki, Akihiko Mabuchi, Makoto Araie, Shiro Amano, Makoto Aihara, Atsuo Tomidokoro, Aiko Iwase, Fumihiko Mabuchi, Kenji Kashiwagi, Shiroaki Shirato, Noriko Yasuda, Hidetoshi Kawashima, Fumiko Nakajima, Jiro Numaga, Yoshiya Kawamura, Tsukasa Sasaki, Katsushi Tokunaga
Software Mentions: 2
Published: over 12 years ago
10.1371/journal.pone.0068093
CpG Methylation Changes within the IL2RA Promoter in Type 1 Diabetes of Childhood OnsetCited by: 47
Author(s): Marie-Pierre Belot, Delphine Fradin, Nga T. T., Sophie Le Fur, Diana Zélénika, Julie Kerr–Conte, François Pattou, Bruno Lucas, Pierre Bougnères
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pone.0072892
No Evidence of Association between Common Autoimmunity STAT4 and IL23R Risk Polymorphisms and Non-Anterior UveitisCited by: 4
Author(s): M C Cénit, Ana Márquez, Miguel Cordero‐Coma, Marina Begoña Gorroño-Echebarría, Alejandro Fonollosa, Alfredo Adán, Agustín Martínez-Berriotxoa, David Díaz Valle, Esperanza Pato, Ricardo Blanco, J. Cañal, M. Díaz-Llopis, José Serrano, Rafael Enrique, María José del Río, José Manuel Martín-Villa, Blanca Molins, Norbérto Ortego-Centeno, Javier Martı́n
Software Mentions: 2
Published: almost 11 years ago
10.1371/journal.pone.0049438
HGDP and HapMap Analysis by Ancestry Mapper Reveals Local and Global Population RelationshipsCited by: 13
Author(s): Tiago R. Magalhães, Jillian P. Casey, Judith Conroy, Regina Regan, Darren J. Fitzpatrick, Naisha Shah, João Sobral, Sean Ennis
Software Mentions: 2
Published: almost 12 years ago
10.1371/journal.pone.0162466
GenToS: Use of Orthologous Gene Information to Prioritize Signals from Human GWASCited by: 2
Author(s): Anselm Hoppmann, Pascal Schlosser, Rolf Backofen, Ekkehart Lausch, Anna Köttgen
Software Mentions: 2
Published: about 8 years ago
10.1038/s41598-021-84652-5
Resequencing and SNP discovery of Amur ide (Leuciscus waleckii) provides insights into local adaptations to extreme environmentsCited by: 13
Author(s): Shuangyi Wang, Youyi Kuang, Liqun Liang, Bo Sun, Xiaohong Zhao, Limin Zhang, Yumei Chang
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0031584
Caucasian and Asian Specific Rheumatoid Arthritis Risk Loci Reveal Limited Replication and Apparent Allelic Heterogeneity in North IndiansCited by: 42
Author(s): Priyanka Prasad, Ashok Kumar, Rajiva Gupta, Ramesh C. Juyal, B.K. Thelma
Software Mentions: 2
Published: almost 13 years ago
10.1186/s12881-020-0965-x
Analysis on the polymorphisms of site RS4977574, and RS1333045 in region 9p21 and the susceptibility of coronary heart disease in Chinese populationCited by: 4
Author(s): Hua Liu, Jinxia Yuan, Shu He, Cheng Zhao, Qiaowei Jia, Jing Zhang, Feng-Hui An, Zhaohong Chen, Lihua Li, Liansheng Wang, Wei Ma, Guangxu Xu, En-Zhi Jia
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pone.0193701
Artificial selection increased body weight but induced increase of runs of homozygosity in Hanwoo cattleCited by: 5
Author(s): Kwondo Kim, Jae‐Hoon Jung, Kelsey Caetano-Anollés, Samsun Sung, DongAhn Yoo, Bong-Hwan Choi, Hyungchul Kim, Jinyoung Jeong, Yong-Min Cho, Eung-Woo Park, Tae-Jeong Choi, Byeongho Park, Dajeong Lim, Heebal Kim
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0255801
Alcohol use and cardiometabolic risk in the UK Biobank: A Mendelian randomization studyCited by: 17
Author(s): Joanna Lankester, Daniela Zanetti, Erik Ingelsson, Themistocles L. Assimes
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0091967
The Association of Transporter Genes Polymorphisms and Lung Cancer Chemotherapy ResponseCited by: 28
Author(s): Ying Wang, Ji‐Ye Yin, Xiangping Li, Juan Chen, Chenyue Qian, Yi Zheng, Yilan Fu, Zi-Yu Chen, Hong‐Hao Zhou, Zhao‐Qian Liu
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pone.0208080
Genome wide association study to identify predictors for severe skin toxicity in colorectal cancer patients treated with cetuximabCited by: 4
Author(s): Jara M Baas, Lisanne Krens, Stefan Böhringer, Linda Mol, Cornelis J.A. Punt, Henk‐Jan Guchelaar, Hans Gelderblom
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0014802
Genetic Classification of Populations Using Supervised LearningCited by: 15
Author(s): M. Bridges, Elizabeth A. Heron, Colm Ó'Dúshláine, Ricardo Segurado, Derek W. Morris, Aiden Corvin, Michael Gill, Carlos Pinto
Software Mentions: 2
Published: over 13 years ago
10.1371/journal.pone.0048687
A Novel Test for Gene-Ancestry Interactions in Genome-Wide Association DataCited by: 4
Author(s): Joanna L. Davies, Jean‐Baptiste Cazier, Malcolm G. Dunlop, Richard S. Houlston, Ian Tomlinson, Connor Holmes
Software Mentions: 2
Published: almost 12 years ago
10.1186/s11689-020-09324-3
Obsessive-compulsive disorder and attention-deficit/hyperactivity disorder: distinct associations with DNA methylation and genetic variationCited by: 22
Author(s): Sarah J. Goodman, Christie L. Burton, Darci T. Butcher, Michelle Siu, Mathieu Lemire, Eric Chater‐Diehl, Andrei L. Turinsky, Michael Brudno, Noam Soreni, David Rosenberg, Kate D. Fitzgerald, Gregory L. Hanna, Evdokia Anagnostou, Paul Arnold, Jennifer Crosbie, Russell Schachar, Rosanna Weksberg
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0010827
Analyses and Comparison of Imputation-Based Association MethodsCited by: 31
Author(s): Yu‐Fang Pei, Lei Zhang, Jian Li, Hong‐Wen Deng
Software Mentions: 2
Published: over 14 years ago
10.1186/1471-2350-14-36
A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosisCited by: 27
Author(s): Nicolas Greliche, Marine Germain, Jean‐Charles Lambert, William Cohen, Marion Bertrand, Anne-Marie Dupuis, Luc Letenneur, Mark Lathrop, Philippe Amouyel, Pierre‐Emmanuel Morange, David‐Alexandre Trégouët
Software Mentions: 2
Published: over 11 years ago
10.1186/s12881-020-0982-9
Association between gene polymorphisms of voltage-dependent Ca2+ channels and hypertension in the Dai people of China: a case-control studyCited by: 2
Author(s): Lingli Huang, Yan Chu, Xiaoqin Huang, Shaohui Ma, Keqin Lin, Kai Huang, Hao Sun, Zhaoqing Yang
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0247092
Patterns of allele frequency differences among domestic cat breeds assessed by a 63K SNP arrayCited by: 6
Author(s): Hasan Alhaddad, Mona Abdi, Leslie A. Lyons
Software Mentions: 2
Published: over 3 years ago
10.18632/oncotarget.11530
Generation and molecular characterization of pancreatic cancer patient-derived xenografts reveals their heterologous natureCited by: 43
Author(s): Joohee Jung, Cue Hyunkyu Lee, Hyang Sook Seol, Yuna Choi, Eunji Kim, Eun Ji Lee, Je-Keun Rhee, Shree Ram Singh, Eun Sung Jun, Byoung Hee Han, Seung‐Mo Hong, Song Cheol Kim, Suhwan Chang
Software Mentions: 2
Published: over 8 years ago
10.1186/s12881-015-0152-7
c.620C>T mutation in GATA4 is associated with congenital heart disease in South IndiaCited by: 22
Author(s): Saidulu Mattapally, Sheikh Nizamuddin, Kona Samba Murthy, Kumarasamy Thangaraj, Sanjay K. Banerjee
Software Mentions: 2
Published: almost 10 years ago
10.1111/cob.12342
Genetic risk score predicts risk for overweight and obesity in Finnish preadolescentsCited by: 9
Author(s): Heli Viljakainen, Erika B. Parente, Rejane Augusta de Oliveira Figueiredo, Niina Sandholm, Trine B. Rounge, Elisabete Weiderpass
Software Mentions: 2
Published: about 5 years ago
10.3390/diagnostics11081501
A Genome-Wide Association Study on Liver Stiffness Changes during Hepatitis C Virus Infection CureCited by: 2
Author(s): Anaïs Corma-Gómez, Juan Macı́as, Antonio Rivero, Ignacio Santos, Sergio Reus, Luís Morano, Dolores Merino, Rosario Palacios, Carlos Galera, Marta Fernández‐Fuertes, Alejandro González‐Serna, Itziar de Rojas, Agustín Ruiz, María Eugenia Sáez, Luis Miguel Real, Juan A Pineda
Software Mentions: 2
Published: over 3 years ago
10.1186/1471-2350-11-96
The role of height-associated loci identified in genome wide association studies in the determination of pediatric statureCited by: 53
Author(s): Jianhua Zhao, Mingyao Li, Jonathan P. Bradfield, Haitao Zhang, Frank Mentch, Kai Wang, Patrick Sleiman, Cecilia E Kim, Joseph T. Glessner, Cuiping Hou, Brendan J. Keating, Kelly Thomas, Maria Garris, Sandra Deliard, Edward C. Frackelton, F. George Otieno, Rosetta M. Chiavacci, Robert I. Berkowitz, Hákon Hákonarson, Struan F.A. Grant
Software Mentions: 2
Published: over 14 years ago
10.1186/s12864-020-6581-5
Comparative genomics and association analysis identifies virulence genes of Cercospora sojina in soybeanCited by: 11
Author(s): Xiaorong Gu, Junjie Ding, Wei Liu, Xiaoxue Yang, Liang liang Yao, Xuedong Gao, Maoming Zhang, Shuai Yang, Jingzhi Wen
Software Mentions: 2
Published: almost 5 years ago
10.1002/ece3.5297
Coast to coast: High genomic connectivity in North American scotersCited by: 10
Author(s): Sarah A. Sonsthagen, R. E. Wilson, Philip Lavretsky, Sandra L. Talbot
Software Mentions: 2
Published: over 5 years ago
10.1002/ece3.5378
Genome‐wide association analyses reveal polygenic genomic architecture underlying divergent shell morphology in Spanish <i>Littorina saxatilis</i> ecotypesCited by: 13
Author(s): Tony Kess, Elizabeth G. Boulding
Software Mentions: 2
Published: over 5 years ago
10.1002/ece3.312
From where did the Western honeybee (<i>Apis mellifera)</i>originate?Cited by: 115
Author(s): Han Fan, Andreas Wållberg, Matthew T. Webster
Software Mentions: 2
Published: over 12 years ago
10.1111/age.12988
Genome‐wide association study for feed efficiency in collective cage‐raised rabbits under full and restricted feedingCited by: 5
Author(s): Juan Pablo Sánchez, Andrés Legarra, María Velasco-Galilea, M. Piles, Armand Sánchez, O. Rafel, Olga González‐Rodríguez, María Ballester
Software Mentions: 2
Published: over 4 years ago
10.1007/s00406-017-0808-8
Investigation of previously implicated genetic variants in chronic tic disorders: a transmission disequilibrium test approachCited by: 17
Author(s): Mohamed Abdulkadir, Douglas Londoño, Derek Gordon, Thomas Fernandez, Lawrence W. Brown, Keun‐Ah Cheon, Barbara J. Coffey, Lonneke Elzerman, Carolin Fremer, Odette Fründt, Blanca García-Delgar, Donald L. Gilbert, Dorothy E. Grice, Tammy Hedderly, Isobel Heyman, Hyun Ju Hong, Chaim Huyser, Laura Ibanez-Gomez, Ewgeni Jakubovski, Young Key Kim, Young S. Kim, Yun-Joo Koh, Sodahm Kook, Samuel Kuperman, Bennett L. Leventhal, Andrea G. Ludolph, Marcos Madruga‐Garrido, Athanasios Maras, Pablo Mir, Àstrid Morer, Kirsten Müller‐Vahl, Alexander Münchau, Tara Murphy, Kerstin Jessica Plessen, Veit Roessner, Eun‐Young Shin, Dong-Ho Song, Jihyun Song, Jennifer Tübing, Els van den Ban, Frank Visscher, Sina Wanderer, Martin Woods, Samuel H. Zinner, Robert A. King, Jay A. Tischfield, Gary A. Heiman, Pieter J. Hoekstra, Andrea Dietrich
Software Mentions: 2
Published: over 7 years ago
10.1192/j.eurpsy.2019.6
An atlas of genetic correlations between psychiatric disorders and human blood plasma proteomeCited by: 6
Author(s): Shiqiang Cheng, Fanglin Guan, Mei Ma, Lu Zhang, Bolun Cheng, Xin Qi, Chujun Liang, Ping Li, Om Prakash Kafle, Yan Wen, Feng Zhang
Software Mentions: 2
Published: almost 5 years ago
10.1186/s12864-018-4851-2
LPG: A four-group probabilistic approach to leveraging pleiotropy in genome-wide association studiesCited by: 8
Author(s): Yi Yang, Mingwei Dai, Jian Huang, Xinyi Lin, Can Yang, Min Chen, Jin Liu
Software Mentions: 2
Published: over 6 years ago
10.1038/s41398-021-01306-w
Polygenic risk score, healthy lifestyles, and risk of incident depressionCited by: 15
Author(s): Zhi Cao, Hongxi Yang, Yixuan Ye, Yuan Zhang, Shu Li, Hongyu Zhao, Yaogang Wang
Software Mentions: 2
Published: over 3 years ago
10.1111/eva.13151
Whole‐genome analyses provide no evidence for dog introgression in Fennoscandian wolf populationsCited by: 15
Author(s): Linnéa Smeds, Jouni Aspi, J. Andrew Berglund, Ilpo Kojola, Konstantin Tirronen, Hans Ellegren
Software Mentions: 2
Published: about 4 years ago
10.1007/s00439-021-02268-1
Exome sequencing reveals predominantly de novo variants in disorders with intellectual disability (ID) in the founder population of FinlandCited by: 18
Author(s): Irma Järvelä, Tuomo Määttä, Anushree Acharya, Juha Leppälä, Shalini N. Jhangiani, Maria Arvio, Auli Sirén, Minna Kankuri-Tammilehto, Hannaleena Kokkonen, Maarit Palomäki, Teppo Varilo, Mary Fang, Trevor D Hadley, Angad Jolly, Tarja Linnankivi, Ritva Paetau, Anni Saarela, Reetta Kälviäinen, Jan Olme, Liz M Nouel-Saied, Diana M Cornejo-Sanchez, Lorida Llaci, James R. Lupski, Jennifer E. Posey, Suzanne M. Leal, Isabelle Schrauwen
Software Mentions: 2
Published: over 3 years ago
10.3389/fendo.2013.00002
Genome-Wide Assessment of the Association of Rare and Common Copy Number Variations to Testicular Germ Cell CancerCited by: 13
Author(s): Daniel Edsgärd, Marlene Danner Dalgaard, Nils Weinhold, Agata Wesolowska-Andersen, Ewa Rajpert‐De Meyts, Anne Marie Ottesen, Anders Juul, Niels E. Skakkebæk, Thomas Skøt Jensen, Ramneek Gupta, Henrik Leffers, Søren Brunak
Software Mentions: 2
Published: almost 12 years ago
10.3389/fgene.2019.00618
Causal Association Between Birth Weight and Adult Diseases: Evidence From a Mendelian Randomization AnalysisCited by: 42
Author(s): Ping Zeng, Xiang Zhou
Software Mentions: 2
Published: over 5 years ago
10.3389/fgene.2020.586308
Causal Inference for Genetic Obesity, Cardiometabolic Profile and COVID-19 Susceptibility: A Mendelian Randomization StudyCited by: 53
Author(s): Nay Aung, Mohammed Y Khanji, Patricia B. Munroe, Steffen E. Petersen
Software Mentions: 2
Published: about 4 years ago
10.3389/fgene.2019.00890
Rediscover and Refine QTLs for Pig Scrotal Hernia by Increasing a Specially Designed F3 Population and Using Whole-Genome Sequence Imputation TechnologyCited by: 5
Author(s): Wenwu Xu, Chen Dong, Guorong Yan, Shijun Xiao, Tao Huang, Zhiyan Zhang, Lusheng Huang
Software Mentions: 2
Published: about 5 years ago
10.3389/fgene.2019.00498
Whole Genome Linkage Disequilibrium and Effective Population Size in a Coho Salmon (Oncorhynchus kisutch) Breeding Population Using a High-Density SNP ArrayCited by: 36
Author(s): Agustín Barría, Kris A. Christensen, Grazyella Massako Yoshida, Ana Jedlicki, Jong S. Leong, Eric B. Rondeau, Jean Paul Lhorente, Ben F. Koop, William S. Davidson, José M. Yáñez
Software Mentions: 2
Published: over 5 years ago
10.3389/fgene.2019.00612
Genomic Analysis Reveals Pleiotropic Alleles at EDN3 and BMP7 Involved in Chicken Comb Color and Egg ProductionCited by: 16
Author(s): Xianggui Dong, Junying Li, Yuanyuan Zhang, Deguo Han, Guoying Hua, Jiankui Wang, Xuemei Deng, Changxin Wu
Software Mentions: 2
Published: over 5 years ago
10.3389/fgene.2020.548507
Exome Sequencing of Native Populations From the Amazon Reveals Patterns on the Peopling of South AmericaCited by: 9
Author(s): André M. Ribeiro-dos-Santos, Amanda Ferreira Vidal, Tatiana Vinasco-Sandoval, João Farias Guerreiro, Sidney Santos, Ândrea Ribeiro‐dos‐Santos, Sandro J. de Souza
Software Mentions: 2
Published: about 4 years ago
10.3389/fgene.2020.566255
Identification of Signatures of Selection by Whole-Genome Resequencing of a Chinese Native PigCited by: 16
Author(s): Wei Zhang, Min Yang, Mei Zhou, Yuanlang Wang, Xudong Wang, Xiaodong Zhang, Yueyun Ding, Guanghui Zhao, Zhan Yin, Chonglong Wang
Software Mentions: 2
Published: about 4 years ago
10.3389/fgene.2017.00136
Ultrafast Comparison of Personal Genomes via Precomputed Genome FingerprintsCited by: 13
Author(s): Gustavo Glusman, Denise E. Mauldin, Leroy Hood, Max Robinson
Software Mentions: 2
Published: about 7 years ago
10.3389/fgene.2014.00333
Genetic diversity and population structure among six cattle breeds in South Africa using a whole genome SNP panelCited by: 78
Author(s): Sithembile O. Makina, Farai C. Muchadeyi, E. van Marle-Köster, M. D. MacNeil, A. Maiwashe
Software Mentions: 2
Published: about 10 years ago
10.3389/fgene.2018.00592
Combined QTL and Genome Scan Analyses With the Help of 2b-RAD Identify Growth-Associated Genetic Markers in a New Fast-Growing Carp StrainCited by: 14
Author(s): Shengyan Su, Hengde Li, Fukuan Du, Chengfeng Zhang, Xinyuan Li, Xiaojun Jing, Liyue Liu, Zhixun Li, Xiao Yang, Pao Xu, Xinhua Yuan, Jian Zhu, Raouf Bouzoualegh
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12864-019-6164-5
Weighted single-step GWAS identified candidate genes associated with semen traits in a Duroc boar populationCited by: 24
Author(s): Ning Gao, Yilong Chen, Xiaohong Liu, Yunxiang Zhao, Lin Zhu, Ali Liu, Wei Jiang, Xing Peng, Zhang CongLin, Zhenshuang Tang, Xinyun Li, Yaosheng Chen
Software Mentions: 2
Published: about 5 years ago
10.1186/s12864-015-2181-1
WIDDE: a Web-Interfaced next generation database for genetic diversity exploration, with a first application in cattleCited by: 54
Author(s): Guilhem Sempéré, Katayoun Moazami‐Goudarzi, Andre A. Eggen, Dénis Laloë, Mathieu Gautier, Laurence Flori
Software Mentions: 2
Published: about 9 years ago
10.18632/oncotarget.27429
Sequence conservation of mitochondrial (mt)DNA during expansion of clonal mammary epithelial populations suggests a common mtDNA template in CzechII miceCited by: 0
Author(s): Jabril R. Johnson, Justin Lack, Corinne A. Boulanger, Lauren E. Ragle, Gilbert H. Smith
Software Mentions: 2
Published: almost 5 years ago
10.3389/fmolb.2021.690665
Association Between Polymorphisms in Gastric Cancer Related Genes and Risk of Gastric Cancer: A Case-Control StudyCited by: 2
Author(s): Yan Pu, Wen Xu, Zhangjun Jia, Yu Xie, Changxing Luan, Youjia Yu, Feng Chen, Peng Chen, Ding Li, Yan Sun, Jian Zhao, Haiqin Lv
Software Mentions: 2
Published: over 3 years ago
10.3389/fneur.2020.570638
High-risk Allele for Herpes Labialis Severity at the IFNL3/4 Locus is Associated With Vestibular NeuritisCited by: 6
Author(s): Dan Rujescu, Marko Herrling, Annette M. Hartmann, Stephan Maul, Ina Giegling, Bettina Konte, Michael Strupp
Software Mentions: 2
Published: about 4 years ago
10.3389/fnut.2020.574459
Time of Lactation and Maternal Fucosyltransferase Genetic Polymorphisms Determine the Variability in Human Milk OligosaccharidesCited by: 38
Author(s): Grégory Lefebvre, Maya Shevlyakova, Aline Charpagne, Julien Marquis, Mandy Vogel, Toralf Kirsten, Wieland Kieß, Sean Austin, Norbert Sprenger, Aristea Binia
Software Mentions: 2
Published: about 4 years ago
10.3389/fphys.2018.01363
A Single Complex Agpat2 Allele in a Patient With Partial LipodystrophyCited by: 7
Author(s): Marjoleine F. Broekema, Maarten P.G. Massink, Joep de Ligt, E.C.A. Stigter, Houshang Monajemi, Jeroen de Ridder, Boudewijn M.T. Burgering, Gijs W. van Haaften, Eric Kalkhoven
Software Mentions: 2
Published: about 6 years ago
10.3390/jpm11080760
Genetic Association of the Functional WDR4 Gene in Male FertilityCited by: 4
Author(s): Yujia Wang, Eko Mugiyanto, Yun-Ting Peng, Wan-Chen Huang, Wan Hsuan Chou, Chi-Chiu Lee, Yu-Shiuan Wang, Lalu Muhammad Irham, Dyah Aryani Perwitasari, Ming Jen Hsu, Chang Wei-Chiao
Software Mentions: 2
Published: over 3 years ago
10.3389/fpls.2020.603819
Revealing Distinctions in Genetic Diversity and Adaptive Evolution Between Two Varieties of Camellia sinensis by Whole-Genome ResequencingCited by: 11
Author(s): Yanlin An, Xiaozeng Mi, Sheng Zhao, Rui Guo, Xiaobo Xia, Shengrui Liu, Chaoling Wei
Software Mentions: 2
Published: almost 4 years ago
10.1186/s12864-021-07404-9
Genomic predictions for fillet yield and firmness in rainbow trout using reduced-density SNP panelsCited by: 16
Author(s): Rafet Al-Tobasei, Ali R. Ali, André Garcia, Daniela Lourenço, Timothy D. Leeds, Mohamed Salem
Software Mentions: 2
Published: almost 4 years ago
10.3389/fpsyg.2019.00145
Modeling Test-Taking Non-effort in MIRT ModelsCited by: 12
Author(s): Yue Liu, Zhen Li, Hongyun Liu, Fei Luo
Software Mentions: 2
Published: almost 6 years ago
10.1534/g3.117.300465
Fast Ordered Sampling of DNA Sequence VariantsCited by: 0
Author(s): Anthony J. Greenberg
Software Mentions: 2
Published: over 6 years ago
10.1534/g3.118.200513
On the Relationship Between High-Order Linkage Disequilibrium and EpistasisCited by: 10
Author(s): Yanjun Zan, Simon K. G. Forsberg, Örjan Carlborg
Software Mentions: 2
Published: over 6 years ago
10.1534/g3.119.400873
Simulation-Based Evaluation of Three Methods for Local Ancestry Deconvolution of Non-model Crop Species GenomesCited by: 4
Author(s): Aurélien Cottin, Benjamin Penaud, Jean-Christophe Glaszmann, Nabila Yahiaoui, Mathieu Gautier
Software Mentions: 2
Published: almost 5 years ago
10.3390/nu12082261
Desaturase Activity and the Risk of Type 2 Diabetes and Coronary Artery Disease: A Mendelian Randomization StudyCited by: 15
Author(s): Susanne Jäger, Rafael R. C. Cuadrat, Per Hoffmann, Clemens Wittenbecher, Matthias B. Schulze
Software Mentions: 2
Published: over 4 years ago
10.1186/s12864-019-5537-0
High-density genotyping reveals signatures of selection related to acclimation and economically important traits in 15 local sheep breeds from RussiaCited by: 49
Author(s): Andrey A. Yurchenko, Tatiana Deniskova, N. A. Yudin, Arsen V Dotsev, Т. Н. Хамируев, Marina Selionova, Sergey V. Egorov, Henry Reyer, Klaus Wimmers, Gottfried Brem, N. A. Zinovieva, Denis M. Larkin
Software Mentions: 2
Published: over 5 years ago
10.3390/genes10090663
Exploring Shared Susceptibility between Two Neural Crest Cells Originating Conditions: Neuroblastoma and Congenital Heart DiseaseCited by: 12
Author(s): Alessandro Testori, Vito Alessandro Lasorsa, Flora Cimmino, Sueva Cantalupo, Antonella Cardinale, Marianna Avitabile, Giuseppe Limongelli, Maria Giovanna Russo, Sharon J. Diskin, John M. Maris, Marcella Devoto, Bernard Keavney, Heather J. Cordell, Achille Iolascon, Mario Capasso
Software Mentions: 2
Published: about 5 years ago
10.3390/genes11080843
Sequencing and Analysis of the Sex Determination Region of Populus trichocarpaCited by: 18
Author(s): Ran Zhou, David Macaya‐Sanz, Jeremy Schmutz, Jerry Jenkins, Gerald A. Tuskan, Stephen P. DiFazio
Software Mentions: 2
Published: over 4 years ago
10.1186/s12864-021-07663-6
How imputation can mitigate SNP ascertainment BiasCited by: 7
Author(s): Johannes Geibel, Christian Reimer, Torsten Pook, Steffen Weigend, Annett Weigend, Henner Simianer
Software Mentions: 2
Published: over 3 years ago
10.1186/s12864-019-5628-y
A splice donor variant in CCDC189 is associated with asthenospermia in Nordic Red dairy cattleCited by: 20
Author(s): Terhi Iso-Touru, Christine Wurmser, Heli Venhoranta, Maya Hiltpold, T Savolainen, Anu Sironen, Konrad Fischer, Krzysztof Flisikowski, R. Fries, Alejandro Vicente-Carrillo, Manuel Álvarez‐Rodríguez, Szabolcs Nagy, Mervi Mutikainen, Jaana Peippo, Juhani Taponen, Goutam Sahana, Bernt Guldbrandtsen, Henri Simonen, Heriberto Rodriguez‐Martinez, Maria Andersson, Hubert Pausch
Software Mentions: 2
Published: over 5 years ago
10.3390/genes12060910
How a Paleogenomic Approach Can Provide Details on Bioarchaeological Reconstruction: A Case Study from the Globular Amphorae CultureCited by: 3
Author(s): Stefania Vai, Maria Angela Diroma, Costanza Cannariato, Alicja Budnik, Martina Lari, David Caramelli, Elena Pilli
Software Mentions: 2
Published: over 3 years ago
10.1111/j.1601-183X.2010.00672.x
Steroid sulfatase is a potential modifier of cognition in attention deficit hyperactivity disorderCited by: 43
Author(s): Evie Stergiakouli, Kate Langley, Hywel Williams, James Walters, Nigel Williams, Serkan Süren, Ina Giegling, Lawrence S. Wilkinson, Michael John Owen, Dan Rujescu, Anita Thapar, William Davies
Software Mentions: 2
Published: almost 14 years ago
10.1111/gbb.12085
Genome‐wide association study of shared components of reading disability and language impairmentCited by: 88
Author(s): John D. Eicher, Natalie R. Powers, Laura L. Miller, Natacha Akshoomoff, David G. Amaral, Cinnamon S. Bloss, Ondrej Libiger, Nicholas J. Schork, Burcu F. Darst, B. J. Casey, Linda Chang, Thomas Ernst, Jean A. Frazier, Walter E. Kaufmann, Brian Keating, Tal Kenet, David N. Kennedy, Stewart H. Mostofsky, Sarah Murray, Elizabeth R. Sowell, Hauke Bartsch, Joshua Kuperman, Timothy T. Brown, Donald J. Hagler, Anders M. Dale, Terry L. Jernigan, Beaté St Pourcain, George Davey Smith, Susan M. Ring, Jeffrey R. Gruen
Software Mentions: 2
Published: about 11 years ago
10.1111/gbb.12213
Lack of replication for the myosin‐ <scp>18B</scp> association with mathematical ability in independent cohortsCited by: 19
Author(s): Kerry A. Pettigrew, S F Fajutrao Valles, Kristina Moll, Kate Northstone, Susan M. Ring, Craig E. Pennell, Carol A. Wang, Ruth Leavett, Marianna E. Hayiou‐Thomas, Paul A. Thompson, Nuala H. Simpson, Simon E. Fisher, Andrew J. O. Whitehouse, Margaret J. Snowling, Dianne F. Newbury, Silvia Paracchini
Software Mentions: 2
Published: over 9 years ago
10.1111/gbb.12286
The genetics of neuroticism and human valuesCited by: 9
Author(s): George Zacharopoulos, Thomas Lancaster, Gregory R. Maio, David Linden
Software Mentions: 2
Published: over 8 years ago
10.1002/gepi.22335
Shared genomic segment analysis with equivalence testingCited by: 0
Author(s): Sukanya Horpaopan, Cathy S.J. Fann, Mark Lathrop, Jürg Ott
Software Mentions: 2
Published: over 4 years ago
10.1002/gepi.20635
Identity-by-descent-based phasing and imputation in founder populations using graphical modelsCited by: 34
Author(s): Kimmo Palin, Harry Campbell, Alan F. Wright, James F. Wilson, Richard Durbin
Software Mentions: 2
Published: about 13 years ago
10.1186/s12711-017-0370-x
Age-based partitioning of individual genomic inbreeding levels in Belgian Blue cattleCited by: 27
Author(s): Marina Solé, Ann-Stephan Gori, Pierre Faux, Amandine Bertrand, Frédéric Farnir, Mathieu Gautier, Tom Druet
Software Mentions: 2
Published: almost 7 years ago
10.1186/s12711-019-0495-1
The impact of genomic selection on genetic diversity and genetic gain in three French dairy cattle breedsCited by: 58
Author(s): Anna-Charlotte Doublet, Pascal Croiseau, Sébastien Fritz, Alexis Michenet, Chris Hozé, Coralie Danchin-Burge, Dénis Laloë, Gwendal Restoux
Software Mentions: 2
Published: about 5 years ago
10.1186/s12863-014-0139-y
Identification of single nucleotide polymorphisms in Toll-like receptor candidate genes associated with tuberculosis infection in water buffalo (Bubalus bubalis)Cited by: 21
Author(s): Flora Alfano, Simone Peletto, Maria Gabriella Lucibelli, Giorgia Borriello, Giovanna Urciuolo, Maria Grazia Maniaci, Rosanna Desiato, Michela Tarantino, Amalia Barone, Paolo Pasquali, Pier Luigi Acutis, Giorgio Galiero
Software Mentions: 2
Published: almost 10 years ago
10.1186/gb-2009-10-1-r7
A genome-wide genetic signature of Jewish ancestry perfectly separates individuals with and without full Jewish ancestry in a large random sample of European AmericansCited by: 62
Author(s): Anna C. Need, Dalia Kasperavičiūtė, Elizabeth Theresa Cirulli, David B. Goldstein
Software Mentions: 2
Published: almost 16 years ago
10.1186/s12863-016-0421-2
Estimation of genetic parameters and detection of chromosomal regions affecting the major milk proteins and their post translational modifications in Danish Holstein and Danish Jersey cattleCited by: 48
Author(s): Bart Buitenhuis, Nina Aagaard Poulsen, Grum Gebreyesus, Lotte Bach Larsen
Software Mentions: 2
Published: over 8 years ago
10.1186/s13059-019-1679-2
African evolutionary history inferred from whole genome sequence data of 44 indigenous African populationsCited by: 75
Author(s): Shaohua Fan, Derek E. Kelly, Márcia Holsbach Beltrame, Matthew E.B. Hansen, Swapan Mallick, Alessia Ranciaro, Jibril Hirbo, S. R. Thompson, William Beggs, Thomas Nyambo, Sabah A. Omar, Dawit Wolde Meskel, Gurja Belay, Alain Froment, Nick Patterson, David Reich, Sarah A. Tishkoff
Software Mentions: 2
Published: over 5 years ago
10.1186/s13059-019-1729-9
Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera strictaCited by: 31
Author(s): Baosheng Wang, Julius P. Mojica, Nadeesha Perera, Cheng‐Ruei Lee, John T. Lovell, Aarti Sharma, Catherine Adam, Anna Lipzen, Kerrie Barry, Daniel S. Rokhsar, Jeremy Schmutz, Thomas Mitchell‐Olds
Software Mentions: 2
Published: over 5 years ago
10.1186/1471-2156-10-42
A strong association of axillary osmidrosis with the wet earwax type determined by genotyping of the ABCC11 geneCited by: 62
Author(s): Motoi Nakano, Noriko Miwa, Akiyoshi Hirano, Koh-ichiro Yoshiura, Norio Niikawa
Software Mentions: 2
Published: over 15 years ago
10.1093/gbe/evaa057
Recombination Rate Variation and Infrequent Sex Influence Genetic Diversity in Chlamydomonas reinhardtiiCited by: 16
Author(s): Ahmed R. Hasan, Rob W. Ness
Software Mentions: 2
Published: over 4 years ago