Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: plink

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/plink

IRT Separate Calibration Linking Methods
29 versions
Latest release: over 7 years ago
4 dependent packages
1,789 downloads last month

Papers Mentioning plink 399

10.1371/journal.pntd.0007143
Genomic analysis of natural intra-specific hybrids among Ethiopian isolates of Leishmania donovani
Cited by: 15
Author(s): James A. Cotton, Caroline Durrant, Susanne U. Franssen, Tesfaye Gelanew, Asrat Hailu, David Mateus, Mandy Sanders, Matthew Berriman, Petr Volf, Michael A. Miles, Matthew Yeo
Software Mentions: 3
Published: over 4 years ago
10.1186/s12864-015-1702-2
Linked genetic variants on chromosome 10 control ear morphology and body mass among dog breeds
Cited by: 33
Author(s): Matthew T. Webster, Nona Kamgari, Michele Perloski, Marc P. Hoeppner, Erik Axelsson, Åke Hedhammar, Gerli Pielberg, Kerstin Lindblad‐Toh
Software Mentions: 3
Published: over 9 years ago
10.1099/mgen.0.000493
Comparative genomics revealed adaptive admixture in Cryptosporidium hominis in Africa
Cited by: 11
Author(s): Swapnil Tichkule, Aaron R. Jex, Cock van Oosterhout, Anna Rosa Sannella, Ralf Krumkamp, Cassandra Aldrich, Oumou Maïga-Ascofaré, Denise Dekker, Maike Lamshöft, Joyce Mbwana, Njari Rakotozandrindrainy, Steffen Borrmann, Thorsten Thye, Kathrin Schuldt, Doris Winter, Peter G. Kremsner, Kwabena Oppong, Gédéon Prince Manouana, Mirabeau Mbong, Samwel Gesase, Daniel T. R. Minja, Ivo Müeller, Melanie Bahlo, Johanna Nader, Jürgen May, Raphael Rakotozandrindrain, Ayôla Akim Adegnika, John Lusingu, John Amuasi, Daniel Eibach, Simone M. Cacciò
Software Mentions: 3
Published: almost 4 years ago
10.1186/1471-2164-14-S3-S11
Pathway analysis of genome-wide data improves warfarin dose prediction
Cited by: 12
Author(s): Roxana Daneshjou, Nicholas P. Tatonetti, Konrad J. Karczewski, Hersh Sagreiya, Stéphane Bourgeois, Katarzyna Drozda, James K. Burmester, Tatsuhiko Tsunoda, Yusuke Nakamura, Michiaki Kubo, Matthew Tector, Nita A. Limdi, Larisa H. Cavallari, Minoli Perera, Julie A. Johnson, Teri E. Klein, Russ B. Altman
Software Mentions: 3
Published: over 11 years ago
10.1186/1475-2875-12-345
Variations in ncRNA gene LOC284889 and MIF-794CATT repeats are associated with malaria susceptibility in Indian populations
Cited by: 6
Author(s): Aditya Nath Jha, Pandarisamy Sundaravadivel, Sudhanshu S. Pati, Pradeep Kumar Patra, Kumarasamy Thangaraj
Software Mentions: 3
Published: about 11 years ago
10.3389/fpls.2021.648192
Genome-Wide Association Studies Identifying Multiple Loci Associated With Alfalfa Forage Quality
Cited by: 5
Author(s): Sen Lin, César A. Medina, O Steven Norberg, D.K. Combs, Guojie Wang, Glenn E. Shewmaker, Steven C. Fransen, Don Llewellyn, Long‐Xi Yu
Software Mentions: 3
Published: over 3 years ago
10.3390/life11020129
Population Genomics Insights into the First Wave of COVID-19
Cited by: 14
Author(s): Maria Vasilarou, Nikolaos Alachiotis, Joanna Garefalaki, Apostolos Beloukas, Pavlos Pavlidis
Software Mentions: 3
Published: almost 4 years ago
10.3389/fpls.2017.00148
Comparative Genomics Integrated with Association Analysis Identifies Candidate Effector Genes Corresponding to Lr20 in Phenotype-Paired Puccinia triticina Isolates from Australia
Cited by: 28
Author(s): Jing Qin Wu, Sharadha Sakthikumar, Chongmei Dong, Peng Zhang, Christina A. Cuomo, Robert Park
Software Mentions: 3
Published: almost 8 years ago
10.1093/molbev/msab013
Genomics Reveals the Origins of Historical Specimens
Cited by: 22
Author(s): Qian Cong, Jinhui Shen, Jing Zhang, Wenlin Li, Lisa N. Kinch, John V. Calhoun, Andrew Warren, Nick V. Grishin
Software Mentions: 3
Published: almost 4 years ago
10.1186/s12864-017-3883-3
The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics
Cited by: 66
Author(s): Shyam Gopalakrishnan, José Alfredo Samaniego Castruita, Mikkel‐Holger S. Sinding, Lukas F. K. Kuderna, Jannikke Räikkönen, Bent Petersen, Thomas Sicheritz-Pontén, Greger Larson, Ludovic Orlando, Tomàs Marquès-Bonet, Anders J. Hansen, Love Dalén, M. Thomas P. Gilbert
Software Mentions: 3
Published: over 7 years ago
10.1186/s12920-020-00752-7
Mitochondrial GWAS and association of nuclear – mitochondrial epistasis with BMI in T1DM patients
Cited by: 7
Author(s): Agnieszka H. Ludwig-Słomczyńska, Michał Seweryn, Przemysław Kapusta, Ewelina Pitera, Samuel K. Handelman, Urszula Mantaj, Katarzyna Cyganek, Paweł Gutaj, Łucja Dobrucka, Ewa Wender-Ożegowska, Maciej Małecki, Paweł Wołkow
Software Mentions: 3
Published: over 4 years ago
10.1111/mec.13681
Genomic analysis reveals depression due to both individual and maternal inbreeding in a free‐living mammal population
Cited by: 70
Author(s): Camillo Bérénos, Philip A Ellis, Jill G. Pilkington, Josephine M. Pemberton
Software Mentions: 3
Published: over 8 years ago
10.3390/ijms19082303
Genome-Wide Association Study and Selection Signatures Detect Genomic Regions Associated with Seed Yield and Oil Quality in Flax
Cited by: 39
Author(s): Frank M. You, Jin Xiao, Pingchuan Li, Zhen Yao, Guanqing Jia, Ling He, Santosh Kumar, Braulio J. Soto‐Cerda, Scott Duguid, Helen Booker, K. Y. Rashid, Sylvie Cloutier
Software Mentions: 3
Published: over 6 years ago
10.1186/s12864-021-07523-3
Autosomal recessive loci contribute significantly to quantitative variation of male fertility in a dairy cattle population
Cited by: 15
Author(s): Maya Hiltpold, Naveen Kumar Kadri, F. Janett, Ulrich Witschi, F. Schmitz‐Hsu, Hubert Pausch
Software Mentions: 3
Published: over 3 years ago
10.1192/bjp.2018.101
Fractional anisotropy of the uncinate fasciculus and cingulum in bipolar disorder type I, type II, unaffected siblings and healthy controls
Cited by: 31
Author(s): Sonya Foley, Matthew Bracher-Smith, Katherine E. Tansey, Jamie Harrison, Greg D. Parker, Xavier Caseras
Software Mentions: 3
Published: over 6 years ago
10.1111/1755-0998.12665
Pedigree reconstruction from SNP data: parentage assignment, sibship clustering and beyond
Cited by: 166
Author(s): Jisca Huisman
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pgen.1009495
The genomics of rapid climatic adaptation and parallel evolution in North American house mice
Cited by: 24
Author(s): Kathleen G. Ferris, Andreas S. Chavez, Tomohiro Suzuki, Elizabeth J. Beckman, Megan Phifer‐Rixey, Ke Bi, Michael W. Nachman
Software Mentions: 3
Published: over 3 years ago
10.1534/g3.117.300382
Identifying Genetic Differences Between Dongxiang Blue-Shelled and White Leghorn Chickens Using Sequencing Data
Cited by: 7
Author(s): Qi Zhao, Rongrong Liao, Hao Sun, Zhe Zhang, Qishan Wang, Changsuo Yang, Xiangzhe Zhang, Yuchun Pan
Software Mentions: 3
Published: almost 7 years ago
10.1038/s41598-018-36820-3
Polygenic impact of common genetic risk loci for Alzheimer’s disease on cerebral blood flow in young individuals
Cited by: 19
Author(s): Harold L. Chandler, Richard G. Wise, Kevin Murphy, Katherine E. Tansey, David Linden, Thomas Lancaster
Software Mentions: 3
Published: almost 6 years ago
10.1186/s12864-019-6066-6
Multi-trait meta-analyses reveal 25 quantitative trait loci for economically important traits in Brown Swiss cattle
Cited by: 25
Author(s): Zih-Hua Fang, Hubert Pausch
Software Mentions: 3
Published: about 5 years ago
10.1161/STROKEAHA.118.020811
Genetic Study of White Matter Integrity in UK Biobank (N=8448) and the Overlap With Stroke, Depression, and Dementia
Cited by: 58
Author(s): Loes C.A. Rutten-Jacobs, Daniel J. Tozer, Marco Duering, Rainer Malik, Martin Dichgans, Hugh S. Markus, Matthew Traylor
Software Mentions: 3
Published: over 6 years ago
10.1186/s12864-017-4263-8
Meta-analysis of sequence-based association studies across three cattle breeds reveals 25 QTL for fat and protein percentages in milk at nucleotide resolution
Cited by: 52
Author(s): Hubert Pausch, Reiner Emmerling, Birgit Gredler-Grandl, R. Fries, Hans D. Daetwyler, Michael E. Goddard
Software Mentions: 3
Published: about 7 years ago
10.1111/eva.13229
Genomic consequences of human‐mediated translocations in margin populations of an endangered amphibian
Cited by: 2
Author(s): Binia De Cahsan, Michael V. Westbury, Sofia Paraskevopoulou, Hauke Drews, Moritz Ott, Günter Gollmann, Ralph Tiedemann
Software Mentions: 3
Published: over 3 years ago
10.1534/g3.120.401327
Reconstruction of the Largest Pedigree Network for Pear Cultivars and Evaluation of the Genetic Diversity of the USDA-ARS National<i>Pyrus</i>Collection
Cited by: 16
Author(s): Sara Montanari, Joseph D. Postman, Nahla V. Bassil, David B. Neale
Software Mentions: 3
Published: about 4 years ago
10.7717/peerj.8213
<i>VCF2PopTree</i>: a client-side software to construct population phylogeny from genome-wide SNPs
Cited by: 19
Author(s): Sankar Subramanian, Umayal Ramasamy, David Chen
Software Mentions: 3
Published: almost 5 years ago
10.3390/ijms22020553
Genome-Wide Association Study on Total Starch, Amylose and Amylopectin in Barley Grain Reveals Novel Putative Alleles
Cited by: 9
Author(s): Mengdi Li, La Geng, Shanggeng Xie, Dezhi Wu, Lingzhen Ye, Guoping Zhang
Software Mentions: 3
Published: almost 4 years ago
10.1186/s12864-020-06788-4
Identification of genetic loci associated with higher resistance to pancreas disease (PD) in Atlantic salmon (Salmo salar L.)
Cited by: 15
Author(s): Borghild Hillestad, Shokouh Makvandi‐Nejad, Aleksei Krasnov, Hooman K. Moghadam
Software Mentions: 3
Published: over 4 years ago
10.1038/s41398-017-0036-z
Psychiatric polygenic risk associates with cortical morphology and functional organization in aging
Cited by: 6
Author(s): Annie Lee, Mojun Shen, Anqi Qiu
Software Mentions: 3
Published: almost 7 years ago
10.1038/s41598-018-23682-y
Hidden genomic MHC disparity between HLA-matched sibling pairs in hematopoietic stem cell transplantation
Cited by: 8
Author(s): Satu Koskela, Jarmo Ritari, Kati Hyvärinen, Tony Kwan, Riitta Niittyvuopio, Maija Itälä‐Remes, Tomi Pastinen, Jukka Partanen
Software Mentions: 3
Published: over 6 years ago
10.3390/plants9091223
Genetic Diversity and Population Structure of Maize Inbred Lines with Varying Levels of Resistance to Striga Hermonthica Using Agronomic Trait-Based and SNP Markers
Cited by: 8
Author(s): Adekemi Stanley, Abebe Menkir, Paterne A. Agre, Beatrice Elohor Ifie, Pangirayi Tongoona, Nnanna Unachukwu, Silvestro Meseka, Wende Mengesha, Melaku Gedil
Software Mentions: 3
Published: about 4 years ago
10.3390/plants9040527
Paternity Assignment in White Guinea Yam (Dioscorea Rotundata) Half-Sib Progenies from Polycross Mating Design Using SNP Markers
Cited by: 7
Author(s): Prince E. Norman, Paterne A. Agre, Agyemang Danquah, Pangirayi Tongoona, Eric Danquah, David De Koeyer, Ugochukwu N. Ikeogu, Robert Asiedu, Asrat Asfaw
Software Mentions: 3
Published: over 4 years ago
10.3390/plants10081702
Species Delimitation and Conservation in Taxonomically Challenging Lineages: The Case of Two Clades of Capurodendron (Sapotaceae) in Madagascar
Cited by: 6
Author(s): Carlos G. Boluda, Camille Christe, Aina Randriarisoa, Laurent Gautier, Yamama Naciri
Software Mentions: 3
Published: over 3 years ago
10.1007/s10519-021-10053-z
Ethnic Identity and Genome Wide Runs of Homozygosity
Cited by: 1
Author(s): Martin Fieder, Brittany Mitchell, Scott D. Gordon, Susanne Huber, Nicholas G. Martin
Software Mentions: 3
Published: over 3 years ago
10.3390/genes10090649
Origin and Evolution of Deleterious Mutations in Horses
Cited by: 29
Author(s): Ludovic Orlando, Pablo Librado
Software Mentions: 3
Published: about 5 years ago
10.1186/1756-0500-4-276
Indirect calibration between clinical observers - application to the New York Heart Association functional classification system
Cited by: 15
Author(s): Mílton Severo, Rita Gaio, Patrícia Lourenço, Margarida Alvelos, Paulo Bettencourt, Ana Azevedo
Software Mentions: 3
Published: over 13 years ago
10.1111/age.12782
Using genotyping‐by‐sequencing to predict gender in animals
Cited by: 5
Author(s): Timothy P. Bilton, A. J. Chappell, Shannon Clarke, Rüdiger Bräuning, K. G. Dodds, John C. McEwan, Suzanne Rowe
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pone.0093844
Mapping the Genetic Architecture of Gene Regulation in Whole Blood
Cited by: 32
Author(s): Katharina Schramm, Carola Marzi, Claudia Schurmann, Maren Carstensen, Eva Reinmaa, Reiner Biffar, Gertrud Eckstein, Christian Gieger, Hans‐Jörgen Grabe, Georg Homuth, Gabi Kastenmüller, Reedik Mägi, Andres Metspalu, Evelin Mihailov, Annette Peters, Astrid Petersmann, Michael Roden, Konstantin Strauch, Karsten Suhre, Alexander Teumer, Uwe Völker, Henry Völzke, Rui Wang-Sattler, Mélanie Waldenberger, Thomas Meitinger, Thomas Illig, Christian Herder, Harald Grallert, Holger Prokisch
Software Mentions: 3
Published: over 10 years ago
10.7554/eLife.61927
Fast and flexible estimation of effective migration surfaces
Cited by: 18
Author(s): Joseph Marcus, Wooseok Ha, Rina Foygel Barber, John Novembre
Software Mentions: 3
Published: over 3 years ago
10.1038/s41398-018-0229-0
Genetic risk for schizophrenia and autism, social impairment and developmental pathways to psychosis
Cited by: 15
Author(s): Eva Velthorst, Seán Froudist-Walsh, Eli A. Stahl, Douglas M. Ruderfer, Iliyan Ivanov, Joseph D. Buxbaum, Tobias Banaschewski, Arun L.W. Bokde, Dipl-Psych Ub, Christian Büchel, Quinlan Eb, Sylvane Desrivières, Herta Flor, Frouin, Hugh Garavan, Penny Gowland, Andreas Heinz, Bernd Ittermann, Martinot Mp, Éric Artiges, Frauke Nees, Orfanos Dp, Thomas Paus, Luise Poustka, Sarah Hohmann, JH Fröhner, MN Smolka, Henrik Walter, Robert Whelan, Günter Schumann, Avi Reichenberg
Software Mentions: 3
Published: about 6 years ago
10.3390/genes11111312
Assessment of Imputation from Low-Pass Sequencing to Predict Merit of Beef Steers
Cited by: 50
Author(s): W. M. Snelling, Jesse L. Hoff, Jeremiah H. Li, L. A. Kuehn, Brittney N Keel, A. K. Lindholm‐Perry, Joseph K. Pickrell
Software Mentions: 3
Published: about 4 years ago
10.1111/acel.13384
Effect of APOE and a polygenic risk score on incident dementia and cognitive decline in a healthy older population
Cited by: 15
Author(s): Moeen Riaz, Aamira Huq, Joanne Ryan, Suzanne G Orchard, Jane Tiller, Jessica E. Lockery, Robyn L. Woods, Rory Wolfe, Alan E. Renton, Alison Goate, Robert Sebra, Eric E. Schadt, Amy Brodtmann, Raj C. Shah, Elsdon Storey, Anne M. Murray, John J McNeil, Paul Lacaze
Software Mentions: 3
Published: over 3 years ago
10.3390/genes11121448
Identification of Novel Genomic Associations and Gene Candidates for Grain Starch Content in Sorghum
Cited by: 5
Author(s): Sirjan Sapkota, J. Lucas Boatwright, Kathleen Jordan, Richard Boyles, Stephen Kresovich
Software Mentions: 3
Published: almost 4 years ago
10.1186/s12864-015-1977-3
Runs of homozygosity reveal signatures of positive selection for reproduction traits in breed and non-breed horses
Cited by: 96
Author(s): Julia Metzger, Matthias Karwath, Raúl Tonda, Sergi Beltrán, Lídia Águeda, Marta Gut, Ivo Gut, O. Distl
Software Mentions: 3
Published: about 9 years ago
10.1016/j.cell.2019.06.036
CAG Repeat Not Polyglutamine Length Determines Timing of Huntington’s Disease Onset
Cited by: 243
Author(s): Jongmin Lee, Kevin Correia, Jacob M. Loupe, Kyung‐Hee Kim, Doug Barker, Eun Pyo Hong, Michael J. Chao, Jeffrey D. Long, Diane Lucente, Jean Paul Vonsattel, Ricardo Mouro Pinto, Kawther Abu Elneel, Eliana Marisa Ramos, Jayalakshmi Srinidhi Mysore, Tammy Gillis, Vanessa C. Wheeler, Marcy E. MacDonald, James F. Gusella, Branduff McAllister, Thomas Massey, Christopher Medway, Timothy Stone, Lynsey S. Hall, Lesley Jones, Peter Holmans, Seung Kwak, Anka G Ehrhardt, Cristina Sampaio, Marc Ciosi, Alastair Maxwell, Afroditi Chatzi, Darren G. Monckton, Michael Orth, G. Bernhard Landwehrmeyer, Jane S. Paulsen, E. Ray Dorsey, Ira Shoulson, Richard H. Myers
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pgen.1009028
A nonsense variant in Rap Guanine Nucleotide Exchange Factor 5 (RAPGEF5) is associated with equine familial isolated hypoparathyroidism in Thoroughbred foals
Cited by: 6
Author(s): Victor N. Rivas, K. Gary Magdesian, Sophia Fagan, Nathan M. Slovis, Daniela Luethy, Laura H. Javsicas, Brian G. Caserto, Andrew D. Miller, Anna R. Dahlgren, Janel Peterson, Erin N. Hales, Sichong Peng, Katherine D. Watson, Mustafa K. Khokha, Carrie J. Finno
Software Mentions: 3
Published: about 4 years ago
10.1038/s41398-021-01360-4
Genome wide association study identifies four loci for early onset schizophrenia
Cited by: 12
Author(s): Shuxia Guo, Jiewei Liu, Wenqiang Li, Yongfeng Yang, Luxian Lv, Xiao Xiao, Ming Li, Fanglin Guan, Xiong‐Jian Luo
Software Mentions: 3
Published: over 3 years ago
10.3390/genes12081160
Genotype Pattern Mining for Pairs of Interacting Variants Underlying Digenic Traits
Cited by: 6
Author(s): Atsuyuki Okazaki, Sukanya Horpaopan, Qingrun Zhang, Matthew Randesi, Jürg Ott
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-018-29496-2
Subtle left-right asymmetry of gene expression profiles in embryonic and foetal human brains
Cited by: 47
Author(s): Carolien G.F. de Kovel, Steven Lisgo, Simon E. Fisher, Clyde Francks
Software Mentions: 3
Published: about 6 years ago
10.1186/s12863-016-0458-2
A nonsense mutation in the COL7A1 gene causes epidermolysis bullosa in Vorderwald cattle
Cited by: 28
Author(s): Hubert Pausch, Simon Ammermüller, Christine Wurmser, H. Hamann, Jens Tetens, Cord Drögemüller, R. Fries
Software Mentions: 2
Published: almost 8 years ago
10.1093/gbe/evaa070
Fine-Scale Population Structure but Limited Genetic Differentiation in a Cooperatively Breeding Paper Wasp
Cited by: 18
Author(s): Sarah E. Bluher, Sara Miller, Michael J. Sheehan
Software Mentions: 2
Published: over 4 years ago
10.7554/eLife.48376
Variable prediction accuracy of polygenic scores within an ancestry group
Cited by: 245
Author(s): Hakhamanesh Mostafavi, Arbel Harpak, Ipsita Agarwal, Dalton Conley, Jonathan K. Pritchard, Molly Przeworski
Software Mentions: 2
Published: almost 5 years ago
10.1093/gbe/evab065
The Genetic Variation of Lactase Persistence Alleles in Sudan and South Sudan
Cited by: 4
Author(s): Nina Hollfelder, Hiba Babiker, Lena Granehäll, Carina M. Schlebusch, Mattias Jakobsson
Software Mentions: 2
Published: over 3 years ago
10.1186/gm249
The membrane-spanning 4-domains, subfamily A (MS4A) gene cluster contains a common variant associated with Alzheimer's disease
Cited by: 81
Author(s): Carmen Antúnez, Merçé Boada, Antonio González‐Pérez, Javier Gayán, Reposo Ramírez-Lorca, Juan Marín, Isabel Hernández, Concha Moreno-Rey, Francisco Jesús Morón, Jesús López‐Arrieta, Ana Mauleón, Maiteé Rosende-Roca, Fuensanta Noguera-Perea, Agustina Legaz-García, Laura Vivancos-Moreau, Juan Velasco, José Miguel Carrasco, Montserrat Alegret, Martirio Antequera-Torres, Salvadora Manzanares, Alejandro Romo, Irene Blanca, Susana Ruiz, Ana Espinosa, Sandra Castaño, Blanca García García, Begoña Martínez-Herrada, Georgina Vinyes, Asunción Lafuente, James T. Becker, José Jorge Galán, Manuel Serrano-Rı́os, Enrique Vázquez, Lluís Tárraga, María Eugenia Sáez, Oscar L. López, Luis Miguel Real, Agustín Ruiz
Software Mentions: 2
Published: almost 14 years ago
10.1186/s13073-021-00914-x
Genetic correlation and causal relationships between cardio-metabolic traits and lung function impairment
Cited by: 7
Author(s): Matthias Wielscher, André Amaral, Diana A van der Plaat, Louise V. Wain, Sylvain Sebért, David Mosén-Ansorena, Juha Auvinen, Karl Heinz Herzig, Abbas Dehghan, Déborah Jarvis, Marjo Riitta Järvelin
Software Mentions: 2
Published: over 3 years ago
10.1186/s13073-021-00927-6
A global overview of genetically interpretable multimorbidities among common diseases in the UK Biobank
Cited by: 26
Author(s): Guiying Dong, Jianfeng Feng, Fengzhu Sun, Jingqi Chen, Xing‐Ming Zhao
Software Mentions: 2
Published: over 3 years ago
10.1017/gheg.2017.14
Beta-globin gene haplotypes and selected Malaria-associated variants among black Southern African populations
Cited by: 5
Author(s): Gift D. Pule, Emile R. Chimusa, Khuthala Mnika, Kudakwashe Mhandire, Elizabeth Kampira, Collet Dandara, Ambroise Wonkam
Software Mentions: 2
Published: almost 8 years ago
10.1186/1471-2105-9-138
Goldsurfer2 (Gs2): A comprehensive tool for the analysis and visualization of genome wide association studies
Cited by: 10
Author(s): Fredrik Pettersson, Andrew P. Morris, Michael R. Barnes, Lon R. Cardon
Software Mentions: 2
Published: over 16 years ago
10.3390/ani11061815
Genomic Prediction in Local Breeds: The Rendena Cattle as a Case Study
Cited by: 6
Author(s): Enrico Mancin, Beniamino Tuliozi, Cristina Sartori, Nadia Guzzo, Roberto Mantovani
Software Mentions: 2
Published: over 3 years ago
10.1038/s41439-019-0058-6
Is the population of Sado Island genetically close to the population of western Japan?
Cited by: 0
Author(s): Kazuharu Misawa, Hiroshi Watanabe, Akio Yokoseki, Minako Wakasugi, Osamu Onodera, Ichiei Narita, Takeshi Momotsu, Kenji Satô, Naoto Endo
Software Mentions: 2
Published: over 5 years ago
10.1038/s41439-021-00154-w
Genome-wide copy number variation analysis of hepatitis B infection in a Japanese population
Cited by: 1
Author(s): Masataka Kikuchi, Kaori Kobayashi, Nao Nishida, Hiromi Sawai, Masaya Sugiyama, Masashi Mizokami, Katsushi Tokunaga, Akihiro Nakaya
Software Mentions: 2
Published: over 3 years ago
10.1111/jbg.12524
Selection in the Finnhorse, a native all‐around horse breed
Cited by: 1
Author(s): Laura Kvist, Johanna Honka, Markku Niskanen, Oona Liedes, Jouni Aspi
Software Mentions: 2
Published: about 4 years ago
10.1111/jcmm.13981
Polymorphism in the PBX1 gene is related to cystinuria in Brazilian families
Cited by: 1
Author(s): Sabrina T. Reis, Kátia R. M. Leite, Giovanni Scala Marchini, Ronaldo M. Guimarães, Nayara Viana, Ruan Pimenta, Fábio César Miranda Torricelli, Alexandre Danilovic, Fábio Carvalho Vicentini, William Carlos Nahas, Miguel Srougi, Eduardo Mazzucchi
Software Mentions: 2
Published: about 6 years ago
10.1111/jcmm.15540
Impact of diet and genes on murine autoimmune pancreatitis
Cited by: 7
Author(s): Robert Jaster, Yask Gupta, Sarah L. Rohde, Luise Ehlers, H Nizze, Artem Vorobyev, Ralf J. Ludwig, Saleh M. Ibrahim
Software Mentions: 2
Published: over 4 years ago
10.1155/2015/613236
Association Analysis of Genetic Variants with Type 2 Diabetes in a Mongolian Population in China
Cited by: 25
Author(s): Haibo Bai, Haiping Liu, Suyalatu Suyalatu, Xiaosen Guo, Shandan Chu, Ying Chen, Tianming Lan, Burenbatu Borjigin, Yuriy L. Orlov, Olga L. Posukh, Xiuqin Yang, Guilan Guilan, Ludmila P. Osipova, Qizhu Wu, Narisu Narisu
Software Mentions: 2
Published: almost 10 years ago
10.1098/rspb.2013.1043
Pleiotropy of <i>FRIGIDA</i> enhances the potential for multivariate adaptation
Cited by: 112
Author(s): John T. Lovell, Thomas E. Juenger, Scott D. Michaels, Jesse R. Lasky, Alexander Platt, James H. Richards, Xuhong Yu, Hsien Ming Easlon, Śaunak Sen, John McKay
Software Mentions: 2
Published: over 11 years ago
10.1098/rspb.2020.2398
Functional genetic diversity in an exploited marine species and its relevance to fisheries management
Cited by: 20
Author(s): Eleni L. Petrou, Angela P. Fuentes‐Pardo, Luke A. Rogers, Melissa Orobko, Carolyn Tarpey, Isadora Jiménez-Hidalgo, Madonna L. Moss, Dongya Yang, Tony J. Pitcher, Todd Sandell, Dayv Lowry, Daniel E. Ruzzante, Lorenz Hauser
Software Mentions: 2
Published: over 3 years ago
10.1111/age.12631
Genome‐wide population structure and admixture analysis reveals weak differentiation among Ugandan goat breeds
Cited by: 22
Author(s): Robert Boyle Onzima, Maulik Upadhyay, Robert Mukiibi, E. Kanis, Martien A. M. Groenen, R.P.M.A. Crooijmans
Software Mentions: 2
Published: almost 7 years ago
10.1038/sdata.2018.164
Transcriptomic analysis of left-right differences in human embryonic forebrain and midbrain
Cited by: 3
Author(s): Carolien G.F. de Kovel, Steven Lisgo, Clyde Francks
Software Mentions: 2
Published: about 6 years ago
10.3390/ani11051311
Whole-Genome Sequence Analysis of Italian Honeybees (Apis mellifera)
Cited by: 5
Author(s): Giulietta Minozzi, Barbara Lazzari, Maria Grazia De Iorio, Cecília Costa, Emanuele Carpana, P. Crepaldi, Rita Rizzi, Elena Facchini, G. Gandini, Alessandra Stella, G. Pagnacco
Software Mentions: 2
Published: over 3 years ago
10.1038/sdata.2018.284
Gene-gene and gene-environment interaction data for platinum-based chemotherapy in non-small cell lung cancer
Cited by: 6
Author(s): Lei‐Yun Wang, Jiajia Cui, Junyan Liu, Ao-Xiang Guo, Zhenyu Zhao, Yingzi Liu, Ji-Chu Wu, Min Li, Chengping Hu, Yang Gao, Hong‐Hao Zhou
Software Mentions: 2
Published: almost 6 years ago
10.1007/s10126-019-09925-7
Evaluation of Genomic Selection for Seven Economic Traits in Yellow Drum (Nibea albiflora)
Cited by: 24
Author(s): Guijia Liu, Linsong Dong, Linlin Gu, Zhaofang Han, Wenjing Zhang, Ming Fang, Zhiyong Wang
Software Mentions: 2
Published: about 5 years ago
10.1186/s12936-018-2205-9
Genetic variants of RNASE3 (ECP) and susceptibility to severe malaria in Senegalese population
Cited by: 7
Author(s): Gora Diop, Céline Derbois, Cheikh Loucoubar, Babacar Mbengué, Bineta Niakhana Ndao, Fatou Thiam, Alassane Thiam, Rokhaya Ndiaye, Yakhya Dièye, Robert Olaso, Jean‐François Deleuze, Alioune Dièye
Software Mentions: 2
Published: almost 7 years ago
10.3390/microorganisms9020300
Dynamics of a Dual SARS-CoV-2 Lineage Co-Infection on a Prolonged Viral Shedding COVID-19 Case: Insights into Clinical Severity and Disease Duration
Cited by: 44
Author(s): Nicole Pedro, Cláudio N. Silva, Ana C. Magalhães, Bruno Cavadas, Ana Mafalda Rocha, Ana C. Moreira, Maria Salomé Gomes, Silva Diogo, Joana Sobrinho‐Simões, Angélica Ramos, Maria João Cardoso, Rita Filipe, Pedro Palma, Filipa Ceia, Susana Silva, João Tiago Guimarães, António Sarmento, Verónica Fernandes, Luı́sa Pereira, Margarida Tavares
Software Mentions: 2
Published: almost 4 years ago
10.1186/s12944-020-01352-1
A minor allele of the haplotype located in the 19q13 loci is associated with a decreased risk of hyper-LDL-cholesterolemia, and a balanced diet and high protein intake can reduce the risk
Cited by: 7
Author(s): Sunmin Park, Suna Kang
Software Mentions: 2
Published: over 4 years ago
10.1038/srep42187
Genomic insights into the population structure and history of the Irish Travellers
Cited by: 25
Author(s): Edmund Gilbert, Shai Carmi, Sean Ennis, James F. Wilson, Gianpiero L. Cavalleri
Software Mentions: 2
Published: almost 8 years ago
10.1186/s40170-021-00269-2
mGWAS identification of six novel single nucleotide polymorphism loci with strong correlation to gastric cancer
Cited by: 4
Author(s): Shangqi Yang, Yuanliang Wang, Yanping Lyu, Yu Jiang, Jianjun Xiang, Shumi Ji, Shuling Kang, Xuejie Lyu, Chenzhou He, Peixin Li, Baoying Liu, Chuancheng Wu
Software Mentions: 2
Published: about 3 years ago
10.1111/mec.12827
Estimating quantitative genetic parameters in wild populations: a comparison of pedigree and genomic approaches
Cited by: 168
Author(s): Camillo Bérénos, Philip A Ellis, Jill G. Pilkington, Josephine M. Pemberton
Software Mentions: 2
Published: over 10 years ago
10.1002/cam4.1838
Fine‐mapping of <scp>HLA</scp> class I and class <scp>II</scp> genes identified two independent novel variants associated with nasopharyngeal carcinoma susceptibility
Cited by: 10
Author(s): Tong Min Wang, Ting Zhou, Yong He, Wen Xue, Jiang Bo Zhang, Xiaojing Zheng, Xi Zhao Li, Shao Dan Zhang, Yi Xin Zeng, Wei Hua Jia
Software Mentions: 2
Published: about 6 years ago
10.1042/BSR20202102
Prediction of gastric cancer risk: association between <i>ZBTB20</i> genetic variance and gastric cancer risk in Chinese Han population
Cited by: 4
Author(s): Fei Bai, Xiao Ke
Software Mentions: 2
Published: about 4 years ago
10.1002/mgg3.1007
Three patients with homozygous familial hypercholesterolemia: Genomic sequencing and kindred analysis
Cited by: 3
Author(s): Karen Wong, Michal Levy‐Sakin, Walfred Ma, Nina Gonzaludo, Angel C. Y. Mak, Dedeepya Vaka, Annie Poon, Catherine Chu, Richard Lao, Melek Balamir, Zoe Grenville, Nicolas Wong, John P. Kane, Pui‐Yan Kwok, Mary J. Malloy, Clive R. Pullinger
Software Mentions: 2
Published: about 5 years ago
10.1042/BSR20210124
A new discovery of STAT4 single nucleotide polymorphisms associated with hepatocellular carcinoma risk in Chinese Han population: a case–control study
Cited by: 1
Author(s): Xu Chen, Jieqiong Wu, Wei Zhang, Xuesong Feng, Luyan Zhao, Feng Huang, Chao Jiang
Software Mentions: 2
Published: over 3 years ago
10.3390/v13091855
Increased sHLA-G Is Associated with Improved COVID-19 Outcome and Reduced Neutrophil Adhesion
Cited by: 16
Author(s): Daria Bortolotti, Valentina Gentili, Sabrina Rizzo, Giovanna Schiuma, Silvia Beltrami, Savino Spadaro, Giovanni Strazzabosco, Gianluca Campo, Edgardo D. Carosella, Alberto Papi, Roberta Rizzo, Marco Contoli
Software Mentions: 2
Published: about 3 years ago
10.1186/1546-0096-9-S1-P152
A pilot study for genome wide association study (GWAS) in patients with juvenile idiopathic arthritis (JIA) and their parents
Cited by: 1
Author(s): Seza Özen, Yeşim Aydın Son, Y. Yener Tuncel, Erkan Demirkaya, Yelda Bilginer, Cengizhan Açıkel, Bilge Volkan Salancı, Özgür Kasapçopur, Erbil Ünsal, Nesrin Beşbaş, Mehmet Alikaşifoğlu
Software Mentions: 2
Published: about 13 years ago
10.7717/peerj.10896
Incomplete lineage sorting and ancient admixture, and speciation without morphological change in ghost-worm cryptic species
Cited by: 16
Author(s): José Cerca, Angel G. Rivera‐Colón, Mafalda S. Ferreira, Mark Ravinet, Michael Nowak, Julian M. Catchen, Torsten H. Struck
Software Mentions: 2
Published: almost 4 years ago
10.1155/2013/813912
Simpute: An Efficient Solution for Dense Genotypic Data
Cited by: 0
Author(s): Yen-Jen Lin, Chun-Tien Chang, Chuan Yi Tang, Wu‐Chiao Hsieh
Software Mentions: 2
Published: almost 12 years ago
10.1111/pbi.13013
Resequencing core accessions of a pedigree identifies derivation of genomic segments and key agronomic trait loci during cotton improvement
Cited by: 28
Author(s): Xiongfeng Ma, Zhenyu Wang, Wei Li, Yuzhou Zhang, Xin Zhou, Yangai Liu, Zhongying Ren, Xinwu Pei, Kehai Zhou, Wensheng Zhang, Kunlun He, Fei Zhang, Junfang Liu, Wanjun Ma, Gao Xiao, Daigang Yang
Software Mentions: 2
Published: about 6 years ago
10.1186/s13040-015-0039-3
An investigation of gene-gene interactions in dose-response studies with Bayesian nonparametrics
Cited by: 1
Author(s): Andrew L. Beam, Alison A. Motsinger‐Reif, Jon Doyle
Software Mentions: 2
Published: almost 10 years ago
10.1136/bmjopen-2021-050844
Protocol for a case–control study investigating the clinical phenotypes and genetic regulation of endometriosis in Indian women: the ECGRI study
Cited by: 5
Author(s): Rahul Gajbhiye, Grant W. Montgomery, Murlidhar V. Pai, Pranay Phukan, Shashank Shekhar, Kedar Padte, Pramathes DasMahapatra, Bimal M John, Chaitanya A. Shembekar, Aishwarya V. Bhurke, Nilajkumar Bagde, Ketki Kulkarni, Nagendra Sardeshpande, Anil Humane, S. K. Mahobia, Millind Shah, Uma Singh, Amit Srivastava, Gita D. Mishra, Neeta Warty, Sunita Chandra, Smita D. Mahale
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pgen.1008915
Endogenization and excision of human herpesvirus 6 in human genomes
Cited by: 17
Author(s): Xiaoxi Liu, Shunichi Kosugi, Rie Koide, Yoshiki Kawamura, Jumpei Ito, Hiroki Miura, Nana Matoba, Motomichi Matsuzaki, Masashi Fujita, Anselmo Jiro Kamada, Hidewaki Nakagawa, Gen Tamiya, Koichi Matsuda, Yoshinori Murakami, Michiaki Kubo, Amr Aswad, Kei Sato, Yukihide Momozawa, Jun Ohashi, Chikashi Terao, Tetsushi Yoshikawa, Nicholas F. Parrish, Yoichiro Kamatani
Software Mentions: 2
Published: over 4 years ago
10.1186/s12890-020-01334-0
Polymorphisms in the airway epithelium related genes CDHR3 and EMSY are associated with asthma susceptibility
Cited by: 1
Author(s): Miao miao Zhang, Guo Chen, Yu Wang, Shou quan Wu, Andrew J. Sandford, Jian-Qing He
Software Mentions: 2
Published: about 4 years ago
10.1371/journal.pgen.1006038
Genetic Dissection of Cardiac Remodeling in an Isoproterenol-Induced Heart Failure Mouse Model
Cited by: 67
Author(s): Jessica Jen-Chu Wang, Christoph Rau, Rozeta Avetisyan, Shuxun Ren, Milagros Romay, Gabriel Stolin, KeWei Gong, Yibin Wang, Aldons J. Lusis
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pgen.1007841
Expression reflects population structure
Cited by: 26
Author(s): Brielin C. Brown, Nicolas Bray, Lior Pachter
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12888-021-03216-z
An exploration of the genetic epidemiology of non-suicidal self-harm and suicide attempt
Cited by: 10
Author(s): Abigail Emma Russell, Gibran Hemani, Hannah Jones, Tamsin Ford, David Gunnell, Jon Heron, Carol Joinson, Paul Moran, Caroline L Relton, Matthew Suderman, Sarah Watkins, Becky Mars
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pgen.1003649
Integrative Modeling of eQTLs and Cis-Regulatory Elements Suggests Mechanisms Underlying Cell Type Specificity of eQTLs
Cited by: 154
Author(s): Christopher D. Brown, Lara M. Mangravite, Barbara E. Engelhardt
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pgen.1007358
The genomic landscape at a late stage of stickleback speciation: High genomic divergence interspersed by small localized regions of introgression
Cited by: 74
Author(s): Mark Ravinet, Kohta Yoshida, Shuji Shigenobu, Atsushi Toyoda, Asao Fujiyama, Jun Kitano
Software Mentions: 2
Published: over 6 years ago
10.1186/1753-6561-8-S1-S23
PREST-plus identifies pedigree errors and cryptic relatedness in the GAW18 sample using genome-wide SNP data
Cited by: 29
Author(s): Lei Sun, Apostolos Dimitromanolakis
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pgen.1006756
Subtypes of Native American ancestry and leading causes of death: Mapuche ancestry-specific associations with gallbladder cancer risk in Chile
Cited by: 33
Author(s): Justo Lorenzo Bermejo, Felix Boekstegers, Rosa González Silos, Katherine Marcelain, Pablo Báez Benavides, Carol Barahona Ponce, Bettina Müller, Catterina Ferreccio, Jill Koshiol, Christine Fischer, Barbara Peil, Janet S. Sinsheimer, Macarena Fuentes Guajardo, Olga Barajas, Rolando González‐José, Gabriel Bedoya, María Cátira Bortolini, Samuel Canizales‐Quinteros, Carla Gallo, Andrés Ruiz-Linares, Francisco Rothhammer
Software Mentions: 2
Published: over 7 years ago
10.3390/ani10112090
Novel Genomic Regions Associated with Intramuscular Fatty Acid Composition in Rabbits
Cited by: 9
Author(s): Houda Laghouaouta, Bolívar Samuel Sosa-Madrid, Agostina Zubiri-Gaitán, Pilar Hernández, A. Blasco
Software Mentions: 2
Published: about 4 years ago
10.1371/journal.pgen.1007745
Population genomics of grey wolves and wolf-like canids in North America
Cited by: 52
Author(s): Mikkel‐Holger S. Sinding, Shyam Gopalakrishan, Filipe Garrett Vieira, José Alfredo Samaniego Castruita, Katrine Raundrup, Mads Peter Heide Jørgensen, Morten Meldgaard, Bent Petersen, Thomas Sicheritz-Pontén, Johan Brus Mikkelsen, Ulf Marquard-Petersen, Runé Dietz, Christian Sonne, Love Dalén, Lutz Bachmann, Øystein Wiig, Anders J. Hansen, M. Thomas P. Gilbert
Software Mentions: 2
Published: about 6 years ago
10.1186/s12870-017-1044-0
Genome-wide association study of salt tolerance at the seed germination stage in rice
Cited by: 94
Author(s): Yu Shi, Lingling Gao, Zhichao Wu, Xiaojing Zhang, Mingming Wang, Cong-Shun Zhang, Fan Zhang, Yongli Zhou, Zhikang Li
Software Mentions: 2
Published: over 7 years ago