Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: picante

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/picante

Integrating Phylogenies and Ecology
28 versions
Latest release: over 4 years ago
24 dependent packages
4,746 downloads last month

Papers Mentioning picante 414

10.1371/journal.pone.0051962
Soil Functional Operating Range Linked to Microbial Biodiversity and Community Composition Using Denitrifiers as Model Guild
Cited by: 20
Author(s): Sara Hallin, Allana Welsh, John Stenström, Stéphanie Hallet, Karin Enwall, David Bru, Laurent Philippot
Software Mentions: 2
Published: almost 12 years ago
10.1038/s41598-019-53829-4
Pollinator restoration in Brazilian ecosystems relies on a small but phylogenetically-diverse set of plant families
Cited by: 18
Author(s): Alistair John Campbell, Luísa G. Carvalheiro, Markus Gastauer, Mário Almeida‐Neto, Tereza Cristina Giannini
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pone.0127959
The Interplay between Environmental Filtering and Spatial Processes in Structuring Communities: The Case of Neotropical Snake Communities
Cited by: 12
Author(s): Hamanda B. Cavalheri, Camila Both, Marcio Roberto Martins
Software Mentions: 2
Published: over 9 years ago
10.3389/fmicb.2016.02078
Local Environmental Conditions Shape Generalist But Not Specialist Components of Microbial Metacommunities in the Baltic Sea
Cited by: 23
Author(s): Markus V. Lindh, Johanna Sjöstedt, Michèle Casini, Agneta Andersson, Catherine Legrand, Jarone Pinhassi
Software Mentions: 2
Published: almost 8 years ago
10.1038/s41598-019-57278-x
Assembly mechanisms of dung beetles in temperate forests and grazing pastures
Cited by: 21
Author(s): Ilse J. Ortega-Martínez, Claudia E. Moreno, Cecilia L. Rios-Díaz, Lucrecia Arellano, Fernando C. W. Rosas, Ignacio Castellanos
Software Mentions: 2
Published: almost 5 years ago
10.1002/ece3.1084
Underdispersion and overdispersion of traits in terrestrial snail communities on islands
Cited by: 33
Author(s): Tina Astor, Joachim Strengbom, Matty P. Berg, Lisette Lenoir, Bryndís Marteinsdóttir, Jan Bengtsson
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pone.0209788
Regional and global shifts in crop diversity through the Anthropocene
Cited by: 45
Author(s): Adam R. Martin, Marc W. Cadotte, Marney E. Isaac, Rubén Milla, Denis Vile, Cyrille Violle
Software Mentions: 2
Published: almost 6 years ago
10.1002/eap.2344
Long‐term trends in the phylogenetic and functional diversity of Anatidae in South China coastal wetlands
Cited by: 2
Author(s): Xianli Che, Min Zhang, Xuebing Zhao, Qiang Zhang, Yanyan Zhao, Anders Pape Møller, Fasheng Zou
Software Mentions: 2
Published: over 3 years ago
10.1002/ece3.7287
Trait means or variance—What determines plant species' local and regional occurrence in fragmented dry grasslands?
Cited by: 5
Author(s): Kolja Bergholz, Klarissa Kober, Florian Jeltsch, Kristina Schmidt, Lina Weiß
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-020-66400-3
A community approach to the Neotropical ticks-hosts interactions
Cited by: 6
Author(s): Agustı́n Estrada-Peña, Stefano Nava, Evelina Luisa Tarragona, José de la Fuente, Alberto A. Guglielmone
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0093049
Ecosystem-Wide Morphological Structure of Leaf-Litter Ant Communities along a Tropical Latitudinal Gradient
Cited by: 54
Author(s): Rogério Rosa da Silva, Carlos Roberto Ferreira Brandão
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pcbi.1004107
Protein Complexes in Bacteria
Cited by: 17
Author(s): J. Harry Caufield, Marco A Abreu, Christopher Wimble, Peter Uetz
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0045199
Determinants of Plant Community Assembly in a Mosaic of Landscape Units in Central Amazonia: Ecological and Phylogenetic Perspectives
Cited by: 19
Author(s): María Natalia Umaña, Natalia Norden, Ángela Cano, Pablo R. Stevenson
Software Mentions: 2
Published: about 12 years ago
10.1371/journal.pone.0081242
Plant-Pollinator Coextinctions and the Loss of Plant Functional and Phylogenetic Diversity
Cited by: 23
Author(s): Marcos Costa Vieira, Marcus V. Cianciaruso, Mário Almeida‐Neto
Software Mentions: 2
Published: almost 11 years ago
10.1038/s41598-020-78183-8
Out of India, thrice: diversification of Asian forest scorpions reveals three colonizations of Southeast Asia
Cited by: 7
Author(s): Stephanie F. Loria, Lorenzo Prendini
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pone.0119166
The Role of Edaphic Environment and Climate in Structuring Phylogenetic Pattern in Seasonally Dry Tropical Plant Communities
Cited by: 48
Author(s): Marcelo Freire Moro, Igor Aurélio Silva, Francisca Soares de Araújo, Eimear Nic Lughadha, Thomas R. Meagher, Fernando Roberto Martins
Software Mentions: 2
Published: over 9 years ago
10.3389/fmicb.2016.01368
Fungal Assemblages in Different Habitats in an Erman’s Birch Forest
Cited by: 16
Author(s): Teng Yang, Huaibo Sun, Congcong Shen, Haiyan Chu
Software Mentions: 2
Published: about 8 years ago
10.7717/peerj.4827
Effects of preservation method on canine (<i>Canis lupus familiaris</i>) fecal microbiota
Cited by: 14
Author(s): Katti R Horng, Holly H. Ganz, Jonathan A. Eisen, Stanley L. Marks
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0080825
Variable Effects of Dispersal on Productivity of Bacterial Communities Due to Changes in Functional Trait Composition
Cited by: 19
Author(s): Ina Severin, Örjan Östman, Eva S. Lindström
Software Mentions: 2
Published: almost 11 years ago
10.3390/toxins12020074
Diet Breadth Mediates the Prey Specificity of Venom Potency in Snakes
Cited by: 37
Author(s): Keith Lyons, Michel M. Dugon, Kevin Healy
Software Mentions: 2
Published: almost 5 years ago
10.7717/peerj.6962
Stochastic and deterministic drivers of seasonal variation of fungal community in tobacco field soil
Cited by: 1
Author(s): Xing Li, Tianming Li, Delong Meng, Tianbo Liu, Yongjun Liu, Huaqun Yin, Jie Deng, Zeng Song-rong, Li Shen
Software Mentions: 2
Published: over 5 years ago
10.7717/peerj.1740
Increasing land use drives changes in plant phylogenetic diversity and prevalence of specialists
Cited by: 5
Author(s): Soraya Villalobos, Jana C. Vamosi
Software Mentions: 2
Published: over 8 years ago
10.1002/ece3.1115
Experimental evidence that the <scp>O</scp> rnstein‐ <scp>U</scp> hlenbeck model best describes the evolution of leaf litter decomposability
Cited by: 15
Author(s): Xu Pan, Johannes H. C. Cornelissen, Weiwei Zhao, Guofang Liu, Yukun Hu, Andreas Prinzing, Ming Dong, William K. Cornwell
Software Mentions: 2
Published: over 10 years ago
10.3389/fpls.2020.599496
Seed Functional Traits Provide Support for Ecological Restoration and ex situ Conservation in the Threatened Amazon Ironstone Outcrop Flora
Cited by: 13
Author(s): Marcílio Zanetti, Roberta L. C. Dayrell, Mariana V. Wardil, Alexandre Damasceno, Taís Nogueira Fernandes, Alexandre Castilho, Fernando Marino Gomes dos Santos, Fernando A. O. Silveira
Software Mentions: 2
Published: almost 4 years ago
10.3389/fmicb.2020.594265
The Effects of Earthworms on Fungal Diversity and Community Structure in Farmland Soil With Returned Straw
Cited by: 7
Author(s): Ke Song, Yuchun Sun, Qin Qin, Lijuan Sun, Xianqing Zheng, William Terzaghi, Wenzhen Lv, Yong Xue
Software Mentions: 2
Published: almost 4 years ago
10.1111/gcb.13545
Climate-related changes of soil characteristics affect bacterial community composition and function of high altitude and latitude lakes
Cited by: 26
Author(s): Carina Rofner, Hannes Peter, Núria Catalán, Fabian Drewes, Rubén Sommaruga, María Teresa Pérez
Software Mentions: 2
Published: almost 8 years ago
10.3389/fmicb.2015.00370
Estimating and mapping ecological processes influencing microbial community assembly
Cited by: 482
Author(s): James C. Stegen, Lin X, Jim K. Fredrickson, Allan Konopka
Software Mentions: 2
Published: over 9 years ago
10.1186/s12866-021-02150-0
Culture-dependent and culture-independent characterization of bacterial community diversity in different types of sandy lands: the case of Minqin County, China
Cited by: 14
Author(s): Yali Wei, Fang Wang, Jiyun Gao, Yongji Huang, Wei Ren, Hongmei Sheng
Software Mentions: 2
Published: over 3 years ago
10.1038/srep36550
Bacterial community structure and function shift along a successional series of tidal flats in the Yellow River Delta
Cited by: 77
Author(s): Xiaofei Lv, Ben Ma, Junbao Yu, Scott X. Chang, Jianming Xu, Yunzhao Li, Guangmei Wang, Guoqi Han, Bo Guan, Xiaoqing Chu
Software Mentions: 2
Published: about 8 years ago
10.1002/ece3.3904
The influence of biogeographic history on the functional and phylogenetic diversity of passerine birds in savannas and forests of the Brazilian Amazon
Cited by: 7
Author(s): Sara Miranda Almeida, Leandro Juen, Fernando Landa Sobral, Marcos Pérsio Dantas Santos
Software Mentions: 2
Published: over 6 years ago
10.1186/s40529-020-00292-4
Evolutionary correlation of water-related traits between different structures of Dendrobium plants
Cited by: 4
Author(s): Mintao Sun, Chun-Hui Feng, Zhenya Liu, Kang Tian
Software Mentions: 2
Published: over 4 years ago
10.1002/ece3.4208
Effects of patch size and basal area on avian taxonomic and functional diversity in pine forests: Implication for the influence of habitat quality on the species–area relationship
Cited by: 10
Author(s): Myung Bok Lee, John P. Carroll
Software Mentions: 2
Published: over 6 years ago
10.1038/srep43032
A Phylogenetic Perspective on Biogeographical Divergence of the Flora in Yunnan, Southwestern China
Cited by: 11
Author(s): Shuiyin Liu, Huan Zhu, Jie Yang
Software Mentions: 2
Published: over 7 years ago
10.1002/ece3.1963
The effects of habitat management on the species, phylogenetic and functional diversity of bees are modified by the environmental context
Cited by: 22
Author(s): Markus A. K. Sydenham, Stein R. Moe, Diana N. Stanescu-Yadav, Ørjan Totland, Katrine Eldegard
Software Mentions: 2
Published: almost 9 years ago
10.1186/1471-2148-11-296
Little ecological divergence associated with speciation in two African rain forest tree genera
Cited by: 52
Author(s): Thomas L. P. Couvreur, Holly Porter-Morgan, Jan J. Wieringa, Lars W. Chatrou
Software Mentions: 2
Published: almost 14 years ago
10.1002/ece3.3181
Tree seed traits’ response to monsoon climate and altitude in Indian subcontinent with particular reference to the Himalayas
Cited by: 13
Author(s): Surendra Pratap Singh, Shyam S. Phartyal, Sergey Rosbakh
Software Mentions: 2
Published: over 7 years ago
10.1186/s40168-018-0570-9
The response of dominant and rare taxa for fungal diversity within different root environments to the cultivation of Bt and conventional cotton varieties
Cited by: 22
Author(s): Peng Li, Yong Xue, Jianjun Shi, Aihu Pan, Xueming Tang, Feng Ming
Software Mentions: 2
Published: about 6 years ago
10.1371/journal.pone.0229443
Niche-processes induced differences in plant growth, carbon balance, stress resistance, and regeneration affect community assembly over succession
Cited by: 0
Author(s): Zhaoyuan Tan, Hui Zhang
Software Mentions: 2
Published: over 4 years ago
10.1007/s00442-021-04981-0
The contribution of environmental and dispersal filters on phylogenetic and taxonomic beta diversity patterns in Amazonian tree communities
Cited by: 6
Author(s): Juan Ernesto Guevara Andino, Nigel C. A. Pitman, Hans ter Steege, Manuel Peralvo, Carlos Céron, Paul V. A. Fine
Software Mentions: 2
Published: over 3 years ago
10.1002/ece3.2147
Leaf lifespan is positively correlated with periods of leaf production and reproduction in 49 herb and shrub species
Cited by: 5
Author(s): Fang Lan Li, Xin Liu, Wei Kai Bao
Software Mentions: 2
Published: over 8 years ago
10.3389/fmicb.2021.690712
Abundance-Occupancy Relationships Along Taxonomic Ranks Reveal a Consistency of Niche Differentiation in Marine Bacterioplankton With Distinct Lifestyles
Cited by: 7
Author(s): Dandan Shen, Anna-Lena Höger, Klaus Jürgens
Software Mentions: 2
Published: over 3 years ago
10.3389/fpls.2019.00185
Stem Diameter (and Not Length) Limits Twig Leaf Biomass
Cited by: 17
Author(s): Jun Sun, Mantang Wang, Min Lyu, Karl J. Niklas, Quanlin Zhong, Man Li, Dongliang Cheng
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0102838
Contrasting the Community Structure of Arbuscular Mycorrhizal Fungi from Hydrocarbon-Contaminated and Uncontaminated Soils following Willow (Salix spp. L.) Planting
Cited by: 44
Author(s): Saad El-Din Hassan, Terrence H. Bell, Franck Stefani, David J. Denis, Mohamed Hijri, Marc St‐Arnaud
Software Mentions: 2
Published: over 10 years ago
10.1242/bio.058612
Convergent acoustic community structure in South Asian dry and wet grassland birds
Cited by: 8
Author(s): Sutirtha Lahiri, Nafisa A. Pathaw, Anand Krishnan
Software Mentions: 2
Published: over 3 years ago
10.1002/ece3.6170
Clade composition of a plant community indicates its phylogenetic diversity
Cited by: 1
Author(s): Martin Bitomský, Pavla Mládková, Robin J. Pakeman, Martin Duchoslav
Software Mentions: 2
Published: over 4 years ago
10.1186/s40168-018-0606-1
Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages
Cited by: 25
Author(s): Samuel Jacquiod, Inês Nunes, Asker Brejnrod, Mette Sif Hansen, Peter E. Holm, Anders Johansen, Kristian K. Brandt, Anders Priemé, Søren J. Sørensen
Software Mentions: 2
Published: almost 6 years ago
10.1002/ece3.2081
Phylogenies and traits provide distinct insights about the historical and contemporary assembly of aquatic insect communities
Cited by: 28
Author(s): Victor S. Saito, Marcus V. Cianciaruso, Tadeu Siqueira, Alaíde Aparecida Fonseca-Gessner, Sandrine Pavoine
Software Mentions: 2
Published: over 8 years ago
10.3389/fmicb.2019.00163
Significant Differences in Bacterial and Potentially Pathogenic Communities Between Sympatric Hooded Crane and Greater White-Fronted Goose
Cited by: 23
Author(s): Xingjia Xiang, Fengling Zhang, Rong Fu, Shaomin Yan, Lizhi Zhou
Software Mentions: 2
Published: almost 6 years ago
10.1186/1472-6785-13-13
Insights into biodiversity sampling strategies for freshwater microinvertebrate faunas through bioblitz campaigns and DNA barcoding
Cited by: 18
Author(s): Brandon J. Laforest, Amanda K. Winegardner, Omar A. Zaheer, Nicholas W. Jeffery, Elizabeth E. Boyle, Sarah J. Adamowicz
Software Mentions: 2
Published: almost 12 years ago
10.1038/s41598-017-17736-w
Long-term nitrogen addition affects the phylogenetic turnover of soil microbial community responding to moisture pulse
Cited by: 61
Author(s): Chi Liu, Minjie Yao, James C. Stegen, Junpeng Rui, Jiabao Li, Xiangzhen Li
Software Mentions: 2
Published: almost 7 years ago
10.3390/ani11082461
Environment-Dependent Variation in Gut Microbiota of an Oviparous Lizard (Calotes versicolor)
Cited by: 6
Author(s): Zhihong Lin, Fang Yang, Ning Li, Buddhi Dayananda
Software Mentions: 2
Published: over 3 years ago
10.1186/s12898-016-0099-3
Loss and conservation of evolutionary history in the Mediterranean Basin
Cited by: 11
Author(s): Simon Véron, Philippe Clergeau, Sandrine Pavoine
Software Mentions: 2
Published: about 8 years ago
10.1038/s41598-018-22788-7
Soil pH is equally important as salinity in shaping bacterial communities in saline soils under halophytic vegetation
Cited by: 58
Author(s): Shuai Zhao, Jun-Jie Liu, Samiran Banerjee, Na Zhou, Zhuo Zhao, Ke Zhang, Tian Chen
Software Mentions: 2
Published: over 6 years ago
10.1098/rspb.2015.2262
Madagascar's grasses and grasslands: anthropogenic or natural?
Cited by: 70
Author(s): Maria S. Vorontsova, Guillaume Besnard, Félix Forest, Panagiota Malakasi, Justin Moat, W. D. Clayton, Paweł Ficinski, George M. Savva, Olinirina Prisca Nanjarisoa, Jacqueline Razanatsoa, Fetra O. Randriatsara, John M. Kimeu, W. R. Quentin Luke, Canisius John Kayombo, H. Peter Linder
Software Mentions: 2
Published: almost 9 years ago
10.1002/mbo3.891
Protist diversity and community assembly in surface sediments of the South China Sea
Cited by: 18
Author(s): Wenxue Wu, Bangqin Huang
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0095672
Relative Importance of Deterministic and Stochastic Processes in Driving Arbuscular Mycorrhizal Fungal Assemblage during the Spreading of a Toxic Plant
Cited by: 9
Author(s): Guoxi Shi, Yongjun Liu, Mao Lin, Shengjing Jiang, Qi Zhang, Gang Cheng, Lizhe An, Guozhen Du, Huyuan Feng
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pone.0040080
Evolutionary Association of Stomatal Traits with Leaf Vein Density in Paphiopedilum, Orchidaceae
Cited by: 63
Author(s): Shi‐Bao Zhang, Zhen Guan, Mintao Sun, Juan Juan Zhang, Kun‐Fang Cao, Hu Hong
Software Mentions: 2
Published: over 12 years ago
10.7554/eLife.15675
Complementary shifts in photoreceptor spectral tuning unlock the full adaptive potential of ultraviolet vision in birds
Cited by: 42
Author(s): Matthew B. Toomey, Olle Lind, Rikard Frederiksen, Robert W. Curley, Ken M. Riedl, David Wilby, Steven J. Schwartz, Christopher C. Witt, Earl H. Harrison, Nicholas W. Roberts, Misha Vorobyev, Kevin J. McGraw, M. Carter Cornwall, Almut Kelber, Joseph C. Corbo
Software Mentions: 2
Published: over 8 years ago
10.1038/s41598-019-41162-9
Genomic analysis of the emergence of drug-resistant strains of Mycobacterium tuberculosis in the Middle East
Cited by: 9
Author(s): Essam J. Alyamani, Sarah A. Marcus, Sarah M Ramirez-Busby, Chungyi Hansen, Julien Rashid, Amani El-Kholy, Daniel Spalink, Faramarz Valafar, Hussein A. Almehdar, Asif A. Jiman-Fatani, Mohammad A. Khiyami, Adel M. Talaat
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0143040
Pre-Dispersal Seed Predation in a Species-Rich Forest Community: Patterns and the Interplay with Determinants
Cited by: 14
Author(s): Xu Yue, Zehao Shen, Daoxin Li, Qinfeng Guo
Software Mentions: 2
Published: about 9 years ago
10.1038/s41598-019-43814-2
High dispersal levels and lake warming are emergent drivers of cyanobacterial community assembly in peri-Alpine lakes
Cited by: 17
Author(s): Marie‐Ève Monchamp, Piet Spaak, Francesco Pomati
Software Mentions: 2
Published: over 5 years ago
10.1093/aobpla/plz063
Stem and leaf growth rates define the leaf size vs. number trade-off
Cited by: 8
Author(s): Jun Sun, Mantang Wang, Min Lyu, Karl J. Niklas, Quanlin Zhong, Man Li, Dongliang Cheng
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-48125-0
Community phylogenetic structure reveals the imprint of dispersal-related dynamics and environmental filtering by nutrient availability in freshwater diatoms
Cited by: 15
Author(s): François Keck, Maria Kahlert
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0031781
Insights into the Ecology and Evolutionary Success of Crocodilians Revealed through Bite-Force and Tooth-Pressure Experimentation
Cited by: 143
Author(s): Gregory M. Erickson, Paul M. Gignac, Scott J. Steppan, A. Kristopher Lappin, Kent A. Vliet, John Brueggen, Brian D. Inouye, David Kledzik, Grahame J. W. Webb
Software Mentions: 1
Published: over 12 years ago
10.1002/ece3.5787
Phylogenetic structure and formation mechanism of shrub communities in arid and semiarid areas of the Mongolian Plateau
Cited by: 15
Author(s): Ying Zheng, Lei Dong, Zhiyong Li, Jing Hui Zhang, Zijing Li, Bingkui Miao, Chengzhen Jia, Cunzhu Liang, Lixin Wang, Frank Y. Li
Software Mentions: 1
Published: about 5 years ago
10.1186/s40168-015-0128-z
Relative and contextual contribution of different sources to the composition and abundance of indoor air bacteria in residences
Cited by: 81
Author(s): Marzia Miletto, Steven E. Lindow
Software Mentions: 1
Published: almost 9 years ago
10.1002/ece3.5117
Exploring the community phylogenetic structure along the slope aspect of subalpine meadows in the eastern Qinghai–Tibetan Plateau, China
Cited by: 19
Author(s): Minxia Liu, Yue Che, Jiao Jiao, Lirong Li, Xiao-Xuan Jiang
Software Mentions: 1
Published: over 5 years ago
10.1002/ece3.5425
Effects of taxon sampling and tree reconstruction methods on phylodiversity metrics
Cited by: 22
Author(s): Johanna R. Jantzen, W. Mark Whitten, Kurt M. Neubig, Lucas C. Majure, Douglas E. Soltis, Pamela S. Soltis
Software Mentions: 1
Published: over 5 years ago
10.3389/fpls.2019.00005
Plastome Sequences Help to Resolve Deep-Level Relationships of Populus in the Family Salicaceae
Cited by: 30
Author(s): Dan Zong, Peihua Gan, Anpei Zhou, Yao Zhang, Xin-Lian Zou, Anan Duan, Yu Song, Chengzhong He
Software Mentions: 1
Published: almost 6 years ago
10.3389/fpls.2017.00501
Floral Mass per Area and Water Maintenance Traits Are Correlated with Floral Longevity in Paphiopedilum (Orchidaceae)
Cited by: 12
Author(s): Fengping Zhang, Yingjie Yang, Qixiang Yang, Wei Zhang, Timothy J. Brodribb, Guang‐You Hao, Hu Hong, Shi‐Bao Zhang
Software Mentions: 1
Published: over 7 years ago
10.1186/s12983-021-00386-0
Cranial morphology of captive mammals: a meta-analysis
Cited by: 6
Author(s): Leila Siciliano-Martina, Jessica E. Light, A. Michelle Lawing
Software Mentions: 1
Published: almost 4 years ago
10.1186/gb-2013-14-1-r10
Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution
Cited by: 364
Author(s): Daniël P. Melters, Keith Bradnam, Hugh A. Young, Natalie Telis, Michael R. May, J. Graham Ruby, Robert Sebra, Paul Peluso, John Eid, David R. Rank, José Fernando Garcia, Joseph L. DeRisi, Timothy P. L. Smith, Christian M. Tobias, Jeffrey Ross‐Ibarra, Ian F Korf, Simon W. L. Chan
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0023533
A Reassessment of Carbon Content in Tropical Trees
Cited by: 217
Author(s): Adam R. Martin, Sean C. Thomas
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0178568
Investigating the effect of forestry on leaf-litter arthropods (Algonquin Park, Ontario, Canada)
Cited by: 4
Author(s): M. Alex Smith, Amanda D. Boyd, Amelia Chan, Simonne Clout, Paulson G. Des Brisay, Sarah J. Dolson, Thanushi Eagalle, Sean Espinola, Aaron D. Fairweather, Sydney Frank, Christopher Fruetel, Cristina Garrido Cortes, J. CHRISTOPHER HALL, Chris Ho, Eryk Matczak, Sandra McCubbin, Megan V. McPhee, Kate Pare, Kelsie Paris, E. Dauffy Richard, Morgan Roblin, Cassandra Russell, Ryan P. Snyder, Carolyn A. Trombley, Tyler Schmitt, Caitlin L. Vandermeer, Connor P Warne, Natasha Welch, Chelsie Xavier-Blower
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0219489
A structured weight loss program increases gut microbiota phylogenetic diversity and reduces levels of Collinsella in obese type 2 diabetics: A pilot study
Cited by: 80
Author(s): Fabian Frost, Lena J. Storck, Tim Kacprowski, Simone Gärtner, Malte Rühlemann, Corinna Bang, André Franke, Uwe Völker, Ali Aghdassi, Antje Steveling, Julia Mayerle, Frank Ulrich Weiss, Georg Homuth, Markus M. Lerch
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0015362
Differential Extinction and the Contrasting Structure of Polar Marine Faunas
Cited by: 32
Author(s): Andrew Z. Krug, David Jablonski, Kaustuv Roy, Alan G. Beu
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pone.0169515
Testing the Efficacy of DNA Barcodes for Identifying the Vascular Plants of Canada
Cited by: 49
Author(s): Thomas Braukmann, Maria L. Kuzmina, Jesse Sills, Evgeny Zakharov, Paul D. N. Hebert
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pone.0100172
Bat Distribution Size or Shape as Determinant of Viral Richness in African Bats
Cited by: 43
Author(s): Gaël Darren Maganga, Mathieu Bourgarel, Peter Vallo, Thierno D. Dallo, Carine Ngoagouni, Jan Felix Drexler, Christian Drosten, Emmanuel Nakouné, Eric M. Leroy, Sergé Morand
Software Mentions: 1
Published: over 10 years ago
10.1098/rsbl.2015.1003
Assessment of available anatomical characters for linking living mammals to fossil taxa in phylogenetic analyses
Cited by: 19
Author(s): Thomas Guillerme, Natalie Cooper
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0185861
Plant DNA barcodes and assessment of phylogenetic community structure of a tropical mixed dipterocarp forest in Brunei Darussalam (Borneo)
Cited by: 15
Author(s): Jacqueline Heckenhauer, Kamariah Abu Salim, Mark W. Chase, Kyle G. Dexter, R. Toby Pennington, Sylvester Tan, Maria Kaye, Rosabelle Samuel
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0198517
Taxonomic and phylogenetic diversity of vascular plants at Ma’anling volcano urban park in tropical Haikou, China: Reponses to soil properties
Cited by: 9
Author(s): Xuhua Cheng, Lang‐Xing Yuan, Mir Muhammad Nizamani, Zhi‐Xin Zhu, Cynthia Ross Friedman, Huafeng Wang
Software Mentions: 1
Published: over 6 years ago
10.1038/srep09337
Assembly of forest communities across East Asia – insights from phylogenetic community structure and species pool scaling
Cited by: 23
Author(s): Gang Feng, Xiangcheng Mi, Wolf L. Eiserhardt, Guangze Jin, Weiguo Sang, Zhijun Lu, Xihua Wang, Xiankun Li, Buhang Li, I‐Fang Sun, Keping Ma, Jens‐Christian Svenning
Software Mentions: 1
Published: over 9 years ago
10.1186/1471-2180-13-204
The saliva microbiome of Pan and Homo
Cited by: 37
Author(s): Jing Li, Ivan Nasidze, Dominique Quinque, Mingkun Li, Hans-Peter Horz, Claudine André, Rosa M. Garriga, Michel Halbwax, Anne Fischer, Mark Stoneking
Software Mentions: 1
Published: about 11 years ago
10.1038/srep20485
Convergent production and tolerance among 107 woody species and divergent production between shrubs and trees
Cited by: 3
Author(s): Wei‐Ming He, Zhongchang Sun
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0143140
Evolutionary Position and Leaf Toughness Control Chemical Transformation of Litter, and Drought Reinforces This Control: Evidence from a Common Garden Experiment across 48 Species
Cited by: 6
Author(s): Xu Pan, Yue Song, Can Jiang, Guofang Liu, Xuehua Ye, Xiufang Xie, Yukun Hu, Weiwei Zhao, Lijuan Cui, Johannes H. C. Cornelissen, Ming Dong, Andreas Prinzing
Software Mentions: 1
Published: about 9 years ago
10.1038/srep36674
Significant Phylogenetic Signal and Climate-Related Trends in Leaf Caloric Value from Tropical to Cold-Temperate Forests
Cited by: 7
Author(s): Guangyan Song, Ying Li, Jiahui Zhang, Meiling Li, Junbo Hou, Nianpeng He
Software Mentions: 1
Published: about 8 years ago
10.1186/s12862-017-1000-5
Plant manipulation through gall formation constrains amino acid transporter evolution in sap-feeding insects
Cited by: 5
Author(s): Chaoyang Zhao, Paul D. Nabity
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0071464
Change in Phylogenetic Community Structure during Succession of Traditionally Managed Tropical Rainforest in Southwest China
Cited by: 24
Author(s): Xiao-Xue Mo, Lingling Shi, Yongjiang Zhang, Huan Zhu, J. W. Ferry Slik
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0216986
A comparison of termite assemblages from West African savannah and forest ecosystems using morphological and molecular markers
Cited by: 7
Author(s): Janine Schyra, Jean Norbert B. K. Gbenyedji, Judith Korb
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0112843
A Well-Resolved Phylogeny of the Trees of Puerto Rico Based on DNA Barcode Sequence Data
Cited by: 23
Author(s): Robert Muscarella, María Uriarte, David L. Erickson, Nathan G. Swenson, Jess K. Zimmerman, W. John Kress
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0182105
Invasions but not extinctions change phylogenetic diversity of angiosperm assemblage on southeastern Pacific Oceanic islands
Cited by: 13
Author(s): Gastón O. Carvallo, Sergio A. Castro
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0060446
Filtering across Spatial Scales: Phylogeny, Biogeography and Community Structure in Bumble Bees
Cited by: 38
Author(s): Alexandra N. Harmon‐Threatt, David D. Ackerly
Software Mentions: 1
Published: over 11 years ago
10.1038/s41598-019-51430-3
The extent, frequency and ecological functions of food wasting by parrots
Cited by: 20
Author(s): Esther Sebastián‐González, Fernando Hiraldo, Guillermo Blanco, Dailos Hernández‐Brito, Pedro Romero‐Vidal, Martina Carrete, Eduardo Gómez‐Llanos, Erica C. Pacífico, José A. Díaz‐Luque, Francisco V. Dénes, José Luis Tella
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-019-54297-6
Spatial and temporal patterns of a pulsed resource dynamically drive the distribution of specialist herbivores
Cited by: 5
Author(s): Violette Doublet, Cindy Gidoin, François Lefèvre, Thomas Boivin
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0084682
Leaf Photosynthetic Rate of Tropical Ferns Is Evolutionarily Linked to Water Transport Capacity
Cited by: 42
Author(s): Shi‐Bao Zhang, Mintao Sun, Kun‐Fang Cao, Hu Hong, Jiao‐Lin Zhang
Software Mentions: 1
Published: almost 11 years ago
10.1038/s41598-020-64576-2
Comparative litter decomposability traits of selected native and exotic woody species from an urban environment of north-western Siwalik region, India
Cited by: 3
Author(s): Meenu Patil, Abhishek Kumar, Pardeep Kumar, Navneet Kaur Cheema, Rupinder Kaur, Ramchand Bhatti, Anita Singh
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-64935-z
XROMM and diceCT reveal a hydraulic mechanism of tongue base retraction in swallowing
Cited by: 18
Author(s): Courtney P. Orsbon, Nicholas J. Gidmark, Tingran Gao, Callum F. Ross
Software Mentions: 1
Published: over 4 years ago
10.3390/plants9080990
Convergent Variations in the Leaf Traits of Desert Plants
Cited by: 25
Author(s): Muhammad Adnan Akram, Xiaoting Wang, Weigang Hu, Jie Xiong, Yahui Zhang, Yan Deng, Jinzhi Ran, Jianming Deng
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-78413-z
Metagenomic analysis reveals rapid development of soil biota on fresh volcanic ash
Cited by: 2
Author(s): Huacan Song, Dorsaf Kerfahi, Koichi Takahashi, Sophie L. Nixon, Binu M. Tripathi, Hyoki Kim, Ryunosuke Tateno, Jonathan M. Adams
Software Mentions: 1
Published: almost 4 years ago
10.1098/rstb.2016.0089
Host allometry influences the evolution of parasite host-generalism: theory and meta-analysis
Cited by: 13
Author(s): Josephine G. Walker, Amy Hurford, Joanne Cable, Amy Ellison, Stephen J. Price, Clayton E. Cressler
Software Mentions: 1
Published: over 7 years ago