Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: phyclust
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/phyclust
Phylogenetic Clustering (Phyloclustering)
33 versions
Latest release: about 1 year ago
4 dependent packages
2,297 downloads last month
Papers Mentioning phyclust 12
10.1093/molbev/msu269
Evaluating the Use of ABBA–BABA Statistics to Locate Introgressed LociCited by: 488
Author(s): Simon H. Martin, John W. Davey, Chris D. Jiggins
Software Mentions: 10
Published: almost 10 years ago
10.1371/journal.pone.0094246
Winemaking and Bioprocesses Strongly Shaped the Genetic Diversity of the Ubiquitous Yeast Torulaspora delbrueckiiCited by: 60
Author(s): Warren Albertin, Laura Chasseriaud, Guillaume Comte, Aurélie Panfili, Adline Delcamp, Franck Salin, Philippe Marullo, Marina Bely
Software Mentions: 7
Published: over 10 years ago
10.1371/journal.pone.0150002
CG Methylation Covaries with Differential Gene Expression between Leaf and Floral Bud Tissues of Brachypodium distachyonCited by: 23
Author(s): Kyria Roessler, Shohei Takuno, Brandon S. Gaut
Software Mentions: 4
Published: over 8 years ago
10.1371/journal.pone.0157739
Ancient Haplotypes at the 15q24.2 Microdeletion Region Are Linked to Brain Expression of MAN2C1 and Children's IntelligenceCited by: 2
Author(s): Alejandro Cáceres, Tõnu Esko, Irene Pappa, Armand Gutiérrez, Maria-José Lopez-Espinosa, Sabrina Llop, Mariona Bustamante, Henning Tiemeier, Andres Metspalu, Peter K. Joshi, James F. Wilsonx, Judith Reina-Castillón, Jean Shin, Zdenka Pausová, Tomáš Paus, Jordi Sunyer, Luis A. Pérez‐Jurado, Juan R. González
Software Mentions: 4
Published: about 8 years ago
10.3389/fpls.2019.00009
Genomic Analysis Confirms Population Structure and Identifies Inter-Lineage Hybrids in Aegilops tauschiiCited by: 37
Author(s): Narinder Singh, Shuangye Wu, Vijay K. Tiwari, Sunish K. Sehgal, John Raupp, Duane Wilson, Mehraj Abbasov, Bikram S. Gill, Jesse Poland
Software Mentions: 4
Published: over 5 years ago
10.3390/v12111304
Genetic and Antigenic Evolution of European Swine Influenza A Viruses of HA-1C (Avian-Like) and HA-1B (Human-Like) Lineages in France from 2000 to 2018Cited by: 7
Author(s): Amélie Chastagner, Séverine Hervé, Stéphane Quéguiner, Edouard Hirchaud, Pierrick Lucas, Stéphane Gorin, Véronique Béven, Nicolas Barbier, Céline Deblanc, Yannick Blanchard, Gaëlle Simon
Software Mentions: 4
Published: almost 4 years ago
10.1093/gbe/evaa053
Divergence-Based Introgression PolarizationCited by: 8
Author(s): Evan S. Forsythe, Daniel B Sloan, Mark A. Beilstein
Software Mentions: 4
Published: over 4 years ago
10.1186/s12859-015-0791-x
The Gap Procedure: for the identification of phylogenetic clusters in HIV-1 sequence dataCited by: 18
Author(s): Irene Vrbik, David A. Stephens, Michel Roger, Bluma G. Brenner
Software Mentions: 2
Published: almost 9 years ago
10.1186/s13073-020-00725-6
Gene family information facilitates variant interpretation and identification of disease-associated genes in neurodevelopmental disordersCited by: 39
Author(s): Dennis Lal, Patrick May, Eduardo Pérez‐Palma, Kaitlin E. Samocha, Jack A. Kosmicki, Elise Robinson, Rikke S. Møller, Roland Krause, Peter Nürnberg, Sarah Weckhuysen, Peter De Jonghe, Renzo Guerrini, Lisa Marie Niestroj, Juliana Du, Carla Marini, James S. Ware, Mitja Kurki, Padhraig Gormley, Sha Tang, Sitao Wu, Saskia Biskup, Annapurna Poduri, Bernd A. Neubauer, Bobby P. C. Koeleman, Katherine L. Helbig, Yvonne G. Weber, Ingo Helbig, Amit R. Majithia, Aarno Palotie, Mark J. Daly
Software Mentions: 2
Published: over 4 years ago
10.1007/s00122-021-03775-5
Comprehensive genotyping of a Brazilian cassava (Manihot esculenta Crantz) germplasm bank: insights into diversification and domesticationCited by: 10
Author(s): Alex C. Ogbonna, Luciano Rogério Braatz de Andrade, Lukas A. Mueller, Eder Jorge de Oliveira, Guillaume Bauchet
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0219102
Cluster analysis on high dimensional RNA-seq data with applications to cancer research - An evaluation studyCited by: 22
Author(s): Linda Vidman, David Källberg, Patrik Rydén
Software Mentions: 1
Published: almost 5 years ago
10.3390/v9050113
Antigenic and Biological Characterization of ORF2–6 Variants at Early Times Following PRRSV InfectionCited by: 14
Author(s): Alyssa B. Evans, Hyelee Loyd, Dunkelberger, van Tol S, Marcus J. Bolton, Karin S. Dorman, Dekkers Jcm, Susan Carpenter
Software Mentions: 1
Published: over 7 years ago