Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: pheatmap

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/pheatmap

Pretty Heatmaps
17 versions
Latest release: almost 6 years ago
77 dependent packages
37,681 downloads last month

Papers Mentioning pheatmap 2,572

10.3389/fmicb.2019.02143
The Bacterial Microbiome Associated With Arid Biocrusts and the Biogeochemical Influence of Biocrusts Upon the Underlying Soil
Cited by: 37
Author(s): Benjamin Moreira‐Grez, Kang Tam, Adam T. Cross, Jean Wan Hong Yong, Deepak Kumaresan, Paul Nevill, Mark Farrell, Andrew S. Whiteley
Software Mentions: 5
Published: about 5 years ago
10.1016/j.isci.2021.102847
High glucose macrophage exosomes enhance atherosclerosis by driving cellular proliferation & hematopoiesis
Cited by: 25
Author(s): Laura Bouchareychas, Phat Duong, Tuan Anh Phu, Eric Alsop, Bessie Meechoovet, Rebecca Reiman, M. Ng, Ryō Yamamoto, Hiromitsu Nakauchi, Warren J. Gasper, Kendall Van Keuren‐Jensen, Robert L. Raffaı̈
Software Mentions: 5
Published: over 3 years ago
10.1186/s40168-020-00850-9
The microbiome as a biosensor: functional profiles elucidate hidden stress in hosts
Cited by: 24
Author(s): Avihai Zolti, Stefan J. Green, Noa Sela, Yitzhak Hadar, Dror Minz
Software Mentions: 5
Published: over 4 years ago
10.1186/s12859-019-2945-8
Helitron distribution in Brassicaceae and whole Genome Helitron density as a character for distinguishing plant species
Cited by: 24
Author(s): Kaining Hu, Kai Xu, Jing Wen, Bin Yi, Chaozhi Ma, Tingdong Fu, Yidan Ouyang, Jinxing Tu
Software Mentions: 5
Published: over 5 years ago
10.3389/fpls.2021.621561
Transcriptome Analysis Reveals Photoperiod-Associated Genes Expressed in Rice Anthers
Cited by: 14
Author(s): Shiyu Sun, Duoxiang Wang, Jingbin Li, Yaqi Lei, Gang Li, Wenguo Cai, Xiangxiang Zhao, Wanqi Liang, Dabing Zhang
Software Mentions: 5
Published: over 3 years ago
10.1186/s40168-020-00819-8
Multi-omics reveals that the rumen microbiome and its metabolome together with the host metabolome contribute to individualized dairy cow performance
Cited by: 139
Author(s): Mingyuan Xue, Hui-Zeng Sun, Xinke Wu, Jianxin Liu, Le Luo Guan
Software Mentions: 5
Published: over 4 years ago
10.18632/oncotarget.23563
Effect of the diet type and temperature on the<i>C. elegans</i>transcriptome
Cited by: 37
Author(s): Eva Gómez-Orte, Eric Cornes, Angelina Zheleva, Beatriz Sáenz-Narciso, María de Toro, María Íñiguez, Rosa López, Juan F. San-Juan, Begoña Ezcurra, Begoña Sacristán, Adolfo Sánchez-Blanco, Julián Cerón, Juan Cabello
Software Mentions: 5
Published: almost 7 years ago
10.18632/aging.202896
Bioinformatic analyses and experimental validation of the role of m6A RNA methylation regulators in progression and prognosis of adrenocortical carcinoma
Cited by: 13
Author(s): Fangshi Xu, Yawen Guan, Yubo Ma, Li Xue, Peng Zhang, Xiaojie Yang, Tie Chong
Software Mentions: 5
Published: over 3 years ago
10.1155/2021/2042114
Identification of Prognostic Metabolism-Related Genes in Clear Cell Renal Cell Carcinoma
Cited by: 8
Author(s): Yusa Chen, Yumei Liang, Ying Chen, Shan Ouyang, Kanghan Liu, Yin Wu
Software Mentions: 5
Published: about 3 years ago
10.1186/s12866-021-02129-x
The infant gut resistome is associated with E. coli and early-life exposures
Cited by: 23
Author(s): Rebecca M. Lebeaux, Modupe Coker, Erika Dade, Thomas J. Palys, Hilary G. Morrison, Benjamin D. Ross, Emily Baker, Margaret R. Karagas, Juliette C. Madan, Anne G. Hoen
Software Mentions: 5
Published: over 3 years ago
10.3389/fphar.2020.599760
Modulation of the Gut Microbiota and Liver Transcriptome by Red Yeast Rice and Monascus Pigment Fermented by Purple Monascus SHM1105 in Rats Fed with a High-Fat Diet
Cited by: 10
Author(s): Hua Yang, Ronghua Pan, Jing Wang, Lizhong Zheng, Zhenjing Li, Qingbin Guo, Changlu Wang
Software Mentions: 5
Published: almost 4 years ago
10.1186/s12935-021-02117-1
Plastin-3 is a diagnostic and prognostic marker for pancreatic adenocarcinoma and distinguishes from diffuse large B-cell lymphoma
Cited by: 6
Author(s): Fei Xiong, Guanhua Wu, Bing Wang, Yongjun Chen
Software Mentions: 5
Published: over 3 years ago
10.18632/aging.104001
Three-gene risk model in papillary renal cell carcinoma: a robust likelihood-based survival analysis
Cited by: 12
Author(s): Yutao Wang, Kexin Yan, Jiaxing Lin, Jianfeng Wang, Zhenhua Zheng, Xinxin Li, Zhixiong Hua, Yue-Peng Bu, Jianxiu Shi, Siqing Sun, Xuejie Li, Yang Liu, Jianbin Bi
Software Mentions: 5
Published: about 4 years ago
10.1186/s12974-019-1418-3
Correlation of alteration of HLA-F expression and clinical characterization in 593 brain glioma samples
Cited by: 36
Author(s): Enshan Feng, Tingyu Liang, Xiaoyong Wang, Juan Du, Kai Tang, Xiaoxuan Wang, Fang Wang, Guoxiang You
Software Mentions: 5
Published: almost 6 years ago
10.18632/aging.103861
Development of a susceptibility gene based novel predictive model for the diagnosis of ulcerative colitis using random forest and artificial neural network
Cited by: 20
Author(s): Hanyang Li, Lijie Lai, Jun Shen
Software Mentions: 5
Published: about 4 years ago
10.3390/metabo11090626
Metabolic Reprogramming of Mammary Epithelial Cells during TGF-β-Induced Epithelial-to-Mesenchymal Transition
Cited by: 5
Author(s): Hua Wang, Sarantos Kostidis, Oleg A. Mayboroda, Martin Giera, Marten Hornsveld, Peter ten Dijke
Software Mentions: 5
Published: about 3 years ago
10.3390/metabo9060113
Cerebral Vitamin B5 (D-Pantothenic Acid) Deficiency as a Potential Cause of Metabolic Perturbation and Neurodegeneration in Huntington’s Disease
Cited by: 46
Author(s): Stefano Patassini, Paul Begley, Jiaolong Xu, Stephanie J. Church, Nina Kureishy, Suzanne J. Reid, Henry J. Waldvogel, Richard L.M. Faull, Russell G. Snell, Richard D. Unwin, Garth J. S. Cooper
Software Mentions: 5
Published: over 5 years ago
10.1016/j.celrep.2021.109119
Integrated OMICs unveil the bone-marrow microenvironment in human leukemia
Cited by: 13
Author(s): Diana Passaro, Manuel Garcia-Albornoz, Giovanni Diana, Probir Chakravarty, Linda Ariza‐McNaughton, Antoniana Batsivari, Clara Borràs-Eroles, Ander Abarrategi, Alexander Waclawiczek, Luigi Ombrato, Ilaria Malanchi, John G. Gribben, Dominique Bonnet
Software Mentions: 5
Published: over 3 years ago
10.1155/2021/9954370
Identification of the Ferroptosis-Associated Gene Signature to Predict the Prognostic Status of Endometrial Carcinoma Patients
Cited by: 5
Author(s): Jinlong Qin, Xiaowen Shao, Lei Wu, Hongling Du
Software Mentions: 5
Published: about 3 years ago
10.1186/s13578-020-00517-w
Identification of predictors based on drug targets highlights accurate treatment of goserelin in breast and prostate cancer
Cited by: 6
Author(s): Yue Zhao, Huimin Sun, Jianzhong Zheng, Chen Shao, Dongwei Zhang
Software Mentions: 5
Published: almost 4 years ago
10.1002/glia.23615
Genetic control of cellular morphogenesis in Müller glia
Cited by: 18
Author(s): Mark Charlton‐Perkins, Alexandra D. Almeida, R. Macdonald, William A. Harris
Software Mentions: 5
Published: over 5 years ago
10.1186/s12920-020-00740-x
Integrative analyses of gene expression profile reveal potential crucial roles of mitotic cell cycle and microtubule cytoskeleton in pulmonary artery hypertension
Cited by: 15
Author(s): Jing Luo, Haiyan Li, Zhenwei Liu, Chenlu Li, Ruochen Wang, Jinxia Fang, Saisai Lu, Jing Guo, Xiongzhao Zhu, Xiaobing Wang
Software Mentions: 5
Published: over 4 years ago
10.3389/fonc.2021.629333
GEO Data Mining Identifies OLR1 as a Potential Biomarker in NSCLC Immunotherapy
Cited by: 6
Author(s): Bin Liu, Ziyu Wang, Meng Gu, Cong Zhao, Teng Ma, Jinghui Wang
Software Mentions: 5
Published: over 3 years ago
10.7150/jca.55719
MRPS17 promotes invasion and metastasis through PI3K/AKT signal pathway and could be potential prognostic marker for gastric cancer
Cited by: 5
Author(s): Wenjie Zhou, Jun Ouyang, Junqing Li, Fangjie Liu, Tailai An, Lv-Jia Cheng, Zi Chong Kuo, Changhua Zhang, Yulong He
Software Mentions: 5
Published: almost 4 years ago
10.1186/s12967-021-02716-6
The potential role of chemotaxis and the complement system in the formation and progression of thoracic aortic aneurysms inferred from the weighted gene coexpression network analysis
Cited by: 5
Author(s): Chuxiang Lei, Dan Yang, Wenlin Chen, Haoxuan Kan, Feifei Xu, Hui Zhang, Wei Wang, Lei Ji, Yuehong Zheng
Software Mentions: 5
Published: almost 4 years ago
10.3389/fcell.2021.633607
Development and Validation of a Hypoxia-Associated Prognostic Signature Related to Osteosarcoma Metastasis and Immune Infiltration
Cited by: 35
Author(s): Yucheng Fu, Qiyuan Bao, Zhuochao Liu, Guoyu He, Junxiang Wen, Qi Liu, Yanguang Xu, Zhijian Jin, Weibin Zhang
Software Mentions: 5
Published: over 3 years ago
10.3389/fcell.2021.630355
Application of Immune Infiltration Signature and Machine Learning Model in the Differential Diagnosis and Prognosis of Bone-Related Malignancies
Cited by: 9
Author(s): Guoqi Li, Yi‐Kai Wang, Hao Zhou, Lin-Guang Jin, Chunyu Wang, Mugahed Abdullah Hasan Albahde, Yan Wu, Hengyuan Li, Wenkan Zhang, Binghao Li
Software Mentions: 5
Published: over 3 years ago
10.3389/fcell.2020.593653
PECAM1 Combines With CXCR4 to Trigger Inflammatory Cell Infiltration and Pulpitis Progression Through Activating the NF-κB Signaling Pathway
Cited by: 10
Author(s): Liu Yong-hong, Zhiyong Zhang, Wenjing Li, Shaomin Tian
Software Mentions: 5
Published: almost 4 years ago
10.1038/s41389-020-0224-1
Desmoplastic small round cell tumor is dependent on the EWS-WT1 transcription factor
Cited by: 24
Author(s): Jenna M. Gedminas, Maggie H. Chassé, Mitchell McBrairty, Ian Beddows, Susan M. Kitchen-Goosen, Patrick J. Grohar
Software Mentions: 5
Published: over 4 years ago
10.3389/fonc.2020.554214
Screening and Identification of Prognostic Tumor-Infiltrating Immune Cells and Genes of Endometrioid Endometrial Adenocarcinoma: Based on The Cancer Genome Atlas Database and Bioinformatics
Cited by: 9
Author(s): Bingnan Chen, Di Wang, Jiapo Li, Yue Hou, Chong Qiao
Software Mentions: 5
Published: almost 4 years ago
10.3389/fonc.2020.00368
Expression Profile and Prognostic Values of HOXA Family Members in Laryngeal Squamous Cell Cancer
Cited by: 20
Author(s): Jinyun Li, Meng Ye, Chongchang Zhou
Software Mentions: 5
Published: over 4 years ago
10.3390/foods10061431
Synergistic Effects of the Jackfruit Seed Sourced Resistant Starch and Bifidobacterium pseudolongum subsp. globosum on Suppression of Hyperlipidemia in Mice
Cited by: 8
Author(s): Zhen Zeng, Yuanyuan Wang, Yanjun Zhang, Kaining Chen, Haibo Chang, Chenchen Ma, Shuaiming Jiang, Dongxue Huo, Wenjun Liu, Rajesh Jha, Jiachao Zhang
Software Mentions: 5
Published: over 3 years ago
10.7554/eLife.42819
Shank3 modulates sleep and expression of circadian transcription factors
Cited by: 56
Author(s): Ashley M Ingiosi, Hannah Schoch, Taylor Wintler, Kristan G. Singletary, Dario Righelli, Leandro Gabriel Roser, E Medina, Davide Risso, Marcos G. Frank, Lucı́a Peixoto
Software Mentions: 5
Published: over 5 years ago
10.3389/fmolb.2020.576298
Identification of Immune-Related Genes MSR1 and TLR7 in Relation to Macrophage and Type-2 T-Helper Cells in Osteosarcoma Tumor Micro-Environments as Anti-metastasis Signatures
Cited by: 10
Author(s): Zhiyu Chen, Huanhuan Huang, Yang Wang, Fangbiao Zhan, Zhengxue Quan
Software Mentions: 5
Published: almost 4 years ago
10.7554/eLife.37816
Antibiotic-induced acceleration of type 1 diabetes alters maturation of innate intestinal immunity
Cited by: 65
Author(s): Xue Song Zhang, Jackie Li, Kimberly A. Krautkramer, Michelle Badri, Thomas Battaglia, Timothy C. Borbet, Hyunwook Koh, Sandy Ng, Rachel A Sibley, Yuanyuan Li, Wimal Pathmasiri, Jindal Sk, Robin R. Shields-Cutler, Ben Hillmann, Gabriel A. Al‐Ghalith, Victoria Ruiz, Alexandra E. Livanos, Angélique B. van’t Wout, Nabeetha A. Nagalingam, Arlin B. Rogers, Susan Sumner, Dan Knights, John M. Denu, Huilin Li, Kelly V. Ruggles, Richard Bonneau, R. Anthony Williamson, Marcus Rauch, Martin J. Blaser
Software Mentions: 5
Published: over 6 years ago
10.3389/fonc.2021.639059
Characterization of Immune Infiltration and Construction of a Prediction Model for Overall Survival in Melanoma Patients
Cited by: 5
Author(s): Gang Li, Xuran Zhu, Chao Liu
Software Mentions: 5
Published: over 3 years ago
10.7554/eLife.58533
A new role for histone demethylases in the maintenance of plant genome integrity
Cited by: 28
Author(s): Javier Antunez-Sanchez, Matthew Naish, Juan S. Ramirez-Prado, Sho Ohno, Ying Huang, Alexander Dawson, Korawit Opassathian, Deborah Manza‐Mianza, Federico Ariel, Cécile Raynaud, Anjar Tri Wibowo, Josquin Daron, Minako Ueda, David Latrasse, R. Keith Slotkin, Detlef Weigel, Moussa Benhamed, José Gutierrez-Marcos
Software Mentions: 5
Published: about 4 years ago
10.1111/jcmm.15111
Novel miRNA markers for the diagnosis and prognosis of endometrial cancer
Cited by: 27
Author(s): Qian Wang, Kai Xu, Tong Yu, Xianning Dai, Teng Xu, Dazhi He, Jianchao Ying
Software Mentions: 5
Published: over 4 years ago
10.3389/fonc.2019.00912
Construction of a Competitive Endogenous RNA Network and Identification of Potential Regulatory Axis in Gastric Cancer
Cited by: 21
Author(s): Hongda Pan, Chen Guo, Jianji Pan, Dongwei Guo, Shibo Song, Ye Zhou, Dazhi Xu
Software Mentions: 5
Published: about 5 years ago
10.1210/endocr/bqz044
Dysregulation of Hypothalamic Gene Expression and the Oxytocinergic System by Soybean Oil Diets in Male Mice
Cited by: 8
Author(s): Poonamjot Deol, Elena Kozlova, Matthew C. Valdez, Catherine Ho, Ei-Wen Yang, H.J. Richardson, Gwendolyn Michelle Gonzalez, Edward Truong, Jack Reid, Joseph M. Valdez, Jonathan Deans, Jose Martinez-Lomeli, Jane R. Evans, Tao Jiang, Frances M. Sladek, Margarita Curras‐Collazo
Software Mentions: 5
Published: almost 5 years ago
10.3389/fcell.2021.645482
Glycolysis Define Two Prognostic Subgroups of Lung Adenocarcinoma With Different Mutation Characteristics and Immune Infiltration Signatures
Cited by: 3
Author(s): Huo Chen, Mengyu Zhang, Rui Li, Tingting Liu, Jianping Li, Yi-Qing Qu
Software Mentions: 5
Published: over 3 years ago
10.3389/fcell.2021.730240
Multi-Omics Analysis of the Anti-tumor Synergistic Mechanism and Potential Application of Immune Checkpoint Blockade Combined With Lenvatinib
Cited by: 4
Author(s): Yuting Lu, Juebin Jin, Qian Du, Min Hu, Yuhan Wei, Miao Wang, Hongzhong Li, Li Qin
Software Mentions: 5
Published: about 3 years ago
10.3389/fcimb.2021.637018
Identification of Microbiome Etiology Associated With Drug Resistance in Pleural Empyema
Cited by: 12
Author(s): Zhaoyan Chen, Hang Cheng, Zhao Cai, Qingjun Wei, Jinlong Li, Jing Liang, Wenshu Zhang, Zhijian Yu, Dongjing Liu, Lei Liu, Zhenqiang Zhang, Ke Wang, Liang Yang
Software Mentions: 5
Published: over 3 years ago
10.1038/srep37473
Hydrocarbon degraders establish at the costs of microbial richness, abundance and keystone taxa after crude oil contamination in permafrost environments
Cited by: 55
Author(s): Shuai Yang, Wen Xi, Yulan Shi, Susanne Liebner, Huijun Jin, Amedea Perfumo
Software Mentions: 5
Published: almost 8 years ago
10.1038/srep31669
Organotypic culture in three dimensions prevents radiation-induced transformation in human lung epithelial cells
Cited by: 3
Author(s): Mariam El-Ashmawy, Melissa Coquelin, Krishna Luitel, Kimberly Batten, Jerry W. Shay
Software Mentions: 5
Published: over 8 years ago
10.7150/ijbs.51207
Development of a novel immune-related lncRNA signature as a prognostic classifier for endometrial carcinoma
Cited by: 25
Author(s): Jinhui Liu, Jie Mei, Yichun Wang, Xucheng Chen, Jiadong Pan, Laigen Tong, Yan Zhang
Software Mentions: 5
Published: almost 4 years ago
10.1038/s41597-020-0352-7
Transcriptome profiling of abiotic responses to heat, cold, salt, and osmotic stress of Capsicum annuum L.
Cited by: 69
Author(s): Won-Hee Kang, Young Mi Sim, Namjin Koo, Jae Do Nam, Junesung Lee, Nayoung Kim, Hakgi Jang, Yongmin Kim, Seon-In Yeom
Software Mentions: 5
Published: almost 5 years ago
10.3389/fcimb.2021.579766
Preterm Birth Is Correlated With Increased Oral Originated Microbiome in the Gut
Cited by: 14
Author(s): Yin Chen, Jingrui Chen, Xiaoyi Wu, Ye-Ling Liu, He Qian, Ying Cao, Yie Huang, Sisun Liu
Software Mentions: 5
Published: over 3 years ago
10.3389/fcell.2021.723721
Identification of the Immune-Related Genes in Tumor Microenvironment That Associated With the Recurrence of Head and Neck Squamous Cell Carcinoma
Cited by: 6
Author(s): Chengcheng Liu, Wenwen Qi, Nianqiao Gong, Fenlu Zhu, Ran Xu, Zhaogang Teng, Fanxing Xu, Ya‐Zhen Qin, Mingqiu Zhao, Xiaoming Li, Ming Xia
Software Mentions: 5
Published: over 3 years ago
10.1155/2020/9493256
Identification of CPT1A as a Prognostic Biomarker and Potential Therapeutic Target for Kidney Renal Clear Cell Carcinoma and Establishment of a Risk Signature of CPT1A-Related Genes
Cited by: 5
Author(s): Yingkun Xu, Guangzhen Wu, Xue Ma, Jianyi Li, Ningke Ruan, Zhe Zhang, Yalei Cao, Yougen Chen, Qi Zhang, Qinghua Xia
Software Mentions: 5
Published: almost 5 years ago
10.1155/2020/3165958
Genome-Wide Analysis, Characterization, and Expression Profile of the Basic Leucine Zipper Transcription Factor Family in Pineapple
Cited by: 6
Author(s): Qing Liu, Mengnan Chai, Man Zhang, Qing-Yu He, Zhenxia Su, S. V. G. N. Priyadarshani, Liping Liu, Guanxi Dong, Yuan Qin
Software Mentions: 5
Published: over 4 years ago
10.3389/fonc.2021.592107
Identification of Expression Patterns and Potential Prognostic Significance of m5C-Related Regulators in Head and Neck Squamous Cell Carcinoma
Cited by: 11
Author(s): Zhaolong Han, Biao Yang, Yu Wang, Xiuxia Zeng, Zhen Tian
Software Mentions: 5
Published: over 3 years ago
10.3389/fmicb.2020.00360
Time-Course RNAseq Reveals Exserohilum turcicum Effectors and Pathogenicity Determinants
Cited by: 16
Author(s): Maria Petronella Human, David Kenneth Berger, Bridget Genevieve Crampton
Software Mentions: 5
Published: over 4 years ago
10.7150/ijms.39056
Identification of gene expression profiles and immune cell infiltration signatures between low and high tumor mutation burden groups in bladder cancer
Cited by: 33
Author(s): Zonglong Wu, Mu-Ru Wang, Qinggang Liu, Yaxiao Liu, Ke-Cheng Zhu, Lipeng Chen, Hongda Guo, Yan Li, Benkang Shi
Software Mentions: 5
Published: almost 5 years ago
10.3389/fmicb.2021.662144
Whole Resistome Analysis in Campylobacter jejuni and C. coli Genomes Available in Public Repositories
Cited by: 16
Author(s): José F. Cobo‐Díaz, Paloma González Del Río, Avelino Álvarez‐Ordóñez
Software Mentions: 5
Published: over 3 years ago
10.12688/f1000research.6536.1
A reanalysis of mouse ENCODE comparative gene expression data
Cited by: 90
Author(s): Yoav Gilad, Orna Mizrahi-Man
Software Mentions: 5
Published: over 9 years ago
10.3389/fmicb.2021.699797
Marked Seasonal Variation in Structure and Function of Gut Microbiota in Forest and Alpine Musk Deer
Cited by: 32
Author(s): Feng Jiang, Hongmei Gao, Wen Qin, Pengfei Song, Haijing Wang, Jingjie Zhang, Daoxin Liu, Dong Wang, Tongzuo Zhang
Software Mentions: 5
Published: about 3 years ago
10.1101/2020.09.16.20196154
SARS-CoV-2 antibody signatures robustly predict diverse antiviral functions relevant for convalescent plasma therapy
Cited by: 20
Author(s): Harini Natarajan, Andrew R. Crowley, Savannah E. Butler, Shiwei Xu, Joshua A. Weiner, Evan M. Bloch, Kirsten Littlefield, Wendy Wieland-Alter, Ruth I. Connor, Peter F. Wright, Sarah E. Benner, Tania S. Bonny, Oliver Laeyendecker, David J. Sullivan, Shmuel Shoham, Thomas C. Quinn, H. Benjamin Larman, Arturo Casadevall, Andrew Pekosz, Andrew D. Redd, Aaron A.R. Tobian, Margaret E. Ackerman
Software Mentions: 5
Published: about 4 years ago
10.1186/s12977-019-0494-x
Heterogeneity in HIV and cellular transcription profiles in cell line models of latent and productive infection: implications for HIV latency
Cited by: 32
Author(s): Sushama Telwatte, Sara Morón-López, Dvir Aran, Peggy Kim, Christine L. Hsieh, Sunil Kumar Joshi, Mauricio Montaño, Warner C. Greene, Atul J. Butte, Joseph K. Wong, Steven A. Yukl
Software Mentions: 5
Published: about 5 years ago
10.3389/fonc.2021.745166
A Co-Expression Network Reveals the Potential Regulatory Mechanism of lncRNAs in Relapsed Hepatocellular Carcinoma
Cited by: 6
Author(s): Yuan Fang, Yang Yang, Xiaoli Zhang, Na Li, Bo Yuan, Li Jin, Sheng Bao, Mengge Li, Dan Zhao, Lingrui Li, Zhong Zeng, Hanfei Huang
Software Mentions: 5
Published: about 3 years ago
10.1155/2021/5553811
Identification of Potential Biomarkers Associated with Acute Myocardial Infarction by Weighted Gene Coexpression Network Analysis
Cited by: 12
Author(s): Yan Wang, Xiangyang Zhang, Min Duan, Chenguang Zhang, Ke Wang, Lili Feng, Linlin Song, Sheng Xi Wu, Xuyan Chen
Software Mentions: 5
Published: about 3 years ago
10.3389/fonc.2021.621430
Identification of Hub Genes Associated With Melanoma Development by Comprehensive Bioinformatics Analysis
Cited by: 8
Author(s): Jie Jiang, Chong Liu, Guoyong Xu, Tuo Liang, Chaojie Yu, Shijie Liao, Zide Zhang, Zhaojun Lu, Zequn Wang, Jiarui Chen, Tianyou Chen, Hao Li, Xinli Zhan
Software Mentions: 5
Published: over 3 years ago
10.21203/rs.3.rs-25643/v1
Identification of new drug treatments to combat COVID19: A signature-based approach using iLINCS
Cited by: 5
Author(s): Sinead M. O’Donovan, Hunter M. Eby, Nicholas Henkel, Justin Creeden, Ali Sajid Imami, Sophie Asah, Xiaolu Zhang, Xiaojun Wu, Rawan Alnafisah, R Travis Taylor, James Reigle, Alexander W. Thorman, Behrouz Shamsaei, Jarek Meller, Robert E. McCullumsmith
Software Mentions: 5
Published: over 4 years ago
10.3389/fncir.2019.00032
A Novel Type of Neuron Within the Dorsal Striatum
Cited by: 16
Author(s): Miaomiao Mao, Aditya Nair, George J Augustine
Software Mentions: 5
Published: over 5 years ago
10.1155/2021/5320445
Predicting Target Genes of San-Huang-Chai-Zhu Formula in Treating ANIT-Induced Acute Intrahepatic Cholestasis Rat Model via Bioinformatics Analysis Combined with Experimental Validation
Cited by: 6
Author(s): Jiaming Yao, Junbin Yan, Jinting Wu, Jianshun Yu, Beihui He, Xi Chen
Software Mentions: 5
Published: about 3 years ago
10.3389/fmicb.2021.616828
Soil Texture, Sampling Depth and Root Hairs Shape the Structure of ACC Deaminase Bacterial Community Composition in Maize Rhizosphere
Cited by: 19
Author(s): Lucie Gebauer, Marie-Lara Bouffaud, Minh Ganther, Bunlong Yim, Doris Vetterlein, Kornelia Smalla, François Buscot, Anna Heintz‐Buschart, Mika Tarkka
Software Mentions: 5
Published: almost 4 years ago
10.1128/mSphere.00308-21
Covariation of the Fecal Microbiome with Diet in Nonpasserine Birds
Cited by: 17
Author(s): Kangpeng Xiao, Yutan Fan, Zhipeng Zhang, Xuejuan Shen, Xiaobing Li, Xianghui Liang, Ran Bi, Yuling Wu, Junqiong Zhai, Jun-Wei Dai, David M. Irwin, Chen Wu, Yongyi Shen
Software Mentions: 5
Published: over 3 years ago
10.3389/fmicb.2021.666010
Differential Impact of Plant Secondary Metabolites on the Soil Microbiota
Cited by: 23
Author(s): Vadim Schütz, Katharina Frindte, Jiaxin Cui, Pengfan Zhang, Stéphane Hacquard, Paul Schulze‐Lefert, Claudia Knief, Margot Schulz, Peter Dörmann
Software Mentions: 5
Published: over 3 years ago
10.3389/fonc.2021.663556
Identification of a Three-RNA Binding Proteins (RBPs) Signature Predicting Prognosis for Breast Cancer
Cited by: 14
Author(s): Yang Liu, Hefen Sun, Xuan Li, Qiqi Liu, Yuanyuan Zhao, Liangdong Li, Baojin Xu, Yifeng Hou, Wei Jin
Software Mentions: 5
Published: over 3 years ago
10.1155/2020/6937475
A New Prognostic Risk Model Based on PPAR Pathway-Related Genes in Kidney Renal Clear Cell Carcinoma
Cited by: 18
Author(s): Yingkun Xu, Xiunan Li, Yaling Han, Zilong Wang, Chenglin Han, Ningke Ruan, Jianyi Li, Xiao Yu, Qinghua Xia, Guangzhen Wu
Software Mentions: 5
Published: about 4 years ago
10.3389/fcell.2021.673295
Overexpression of PLXDC2 in Stromal Cell-Associated M2 Macrophages Is Related to EMT and the Progression of Gastric Cancer
Cited by: 15
Author(s): Yihan Guan, Yuzhang Du, Guanzheng Wang, Hongquan Gou, Yuezhen Xue, Jingsong Xu, Enhao Li, David W. Chan, Di Wu, Peiqing Xu, Peihong Ni, Dakang Xu, Yiqun Hu
Software Mentions: 5
Published: over 3 years ago
10.7554/eLife.47605
Toxoplasma gondii infection drives conversion of NK cells into ILC1-like cells
Cited by: 79
Author(s): Eugene Park, Sanket Patel, Qiuling Wang, Prabhakar S. Andhey, Konstantin Zaitsev, Sophia Porter, Maxwell Hershey, Michael D. Bern, Béatrice Plougastel-Douglas, Patrick L. Collins, Marco Colonna, Kenneth M. Murphy, Eugene M. Oltz, Maxim N. Artyomov, L. David Sibley, Wayne M. Yokoyama
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.ppat.1009441
Viral infection of human neurons triggers strain-specific differences in host neuronal and viral transcriptomes
Cited by: 8
Author(s): Colleen A. Mangold, Molly M. Rathbun, Daniel W. Renner, Chad V. Kuny, Moriah L. Szpara
Software Mentions: 5
Published: over 3 years ago
10.3389/fmicb.2018.02212
A Class 1 Histone Deacetylase as Major Regulator of Secondary Metabolite Production in Aspergillus nidulans
Cited by: 29
Author(s): Angelo Pidroni, Birgit Faber, Gerald Brosch, Ingo Bauer, Stefan Graessle
Software Mentions: 5
Published: about 6 years ago
10.3389/fcell.2021.648806
Construction of a Prognostic Immune-Related LncRNA Risk Model for Lung Adenocarcinoma
Cited by: 16
Author(s): Yue Li, Ruoyi Shen, Anqi Wang, Jian Zhao, Jieqi Zhou, Weijie Zhang, Ruochen Zhang, Jianjie Zhu, Zeyi Liu, Jian-An Huang
Software Mentions: 5
Published: over 3 years ago
10.3389/fmicb.2020.00125
Gut Microbiota Plasticity Influences the Adaptability of Wild and Domestic Animals in Co-inhabited Areas
Cited by: 15
Author(s): Wen Qin, Pengfei Song, Gonghua Lin, YanGan Huang, Lei Wang, Xiaowen Zhou, Shengqing Li, Tongzuo Zhang
Software Mentions: 5
Published: almost 5 years ago
10.1186/s12967-020-02503-9
Genomic landscape of the immune microenvironments of brain metastases in breast cancer
Cited by: 11
Author(s): Wei-Cheng Lu, Hui Xie, Ce Yuan, Jinjiang Li, Zhaoyang Li, Andrew Wu
Software Mentions: 5
Published: about 4 years ago
10.3389/fmicb.2019.01116
Dynamic Alterations in Yak Rumen Bacteria Community and Metabolome Characteristics in Response to Feed Type
Cited by: 116
Author(s): Chang Liu, Hao Wu, Shujie Liu, Shatuo Chai, Qingxiang Meng, Zhenming Zhou
Software Mentions: 5
Published: over 5 years ago
10.1038/s41426-018-0202-2
Altered gut microbiota after traumatic splenectomy is associated with endotoxemia
Cited by: 15
Author(s): Hua Zhu, Yang Liu, Shengda Li, Ye Jin, Lei Zhao, Fuya Zhao, Jing Feng, Yan Wang, Yunwei Wei
Software Mentions: 5
Published: almost 6 years ago
10.7150/ijbs.45693
Cancer stem cell property and gene signature in bone-metastatic Breast Cancer cells
Cited by: 7
Author(s): An Luo, Yue Xu, Shujun Li, Jinxia Bao, Jianrong Lu, Nan Ding, Qian Zhao, Yuting Fu, Fei Liu, William C. Cho, Xunbin Wei, Haiyun Wang, Zuoren Yu
Software Mentions: 5
Published: almost 5 years ago
10.3389/fonc.2019.01212
Stromal-Immune Score-Based Gene Signature: A Prognosis Stratification Tool in Gastric Cancer
Cited by: 114
Author(s): Hao Wang, Xiaosheng Wu, Yiming Chen
Software Mentions: 5
Published: about 5 years ago
10.3389/fcell.2021.676142
Comprehensive Analysis of Ferroptosis Regulators With Regard to PD-L1 and Immune Infiltration in Clear Cell Renal Cell Carcinoma
Cited by: 26
Author(s): Song Wang, Shiming Chen, Yufan Ying, Xueyou Ma, Haixiang Shen, Jiangfeng Li, Xiao Wang, Yiwei Lin, Ben Liu, Xiangyi Zheng, Liping Xie
Software Mentions: 5
Published: over 3 years ago
10.3390/jcm9082452
Insight in miRNome of Long-Term Non-Progressors and Elite Controllers Exposes Potential RNAi Role in Restraining HIV-1 Infection
Cited by: 9
Author(s): Rubén Ayala-Suárez, Francisco Díez-Fuertes, Esther Calonge, Humberto Erick De La Torre Tarazona, M Gracia-Ruiz de Alda, Laura Capa, José Alcamı́
Software Mentions: 5
Published: over 4 years ago
10.3390/ijerph18062832
Impact of Covid-19 Lockdown on Availability of Drinking Water in the Arsenic-Affected Ganges River Basin
Cited by: 17
Author(s): Srimanti Duttagupta, Soumendra N. Bhanja, Avishek Dutta, S. Sarkar, M. Chakraborty, Ashok Ghosh, Debapriya Mondal, Abhijit Mukherjee
Software Mentions: 5
Published: over 3 years ago
10.3389/fonc.2020.583053
Identification of Key Genes in Purine Metabolism as Prognostic Biomarker for Hepatocellular Carcinoma
Cited by: 14
Author(s): Wenjing Su, Peizhi Lu, Yong Wu, K. P. Kannan, Chengkun Yang, Guo‐Dong Lu
Software Mentions: 4
Published: almost 4 years ago
10.15252/embj.2018101430
Cyclin F‐dependent degradation of E2F7 is critical for <scp>DNA</scp> repair and G2‐phase progression
Cited by: 33
Author(s): Ruixue Yuan, Qingwu Liu, Hendrika A. Segeren, Laurensia Yuniati, Daniele Guardavaccaro, Robert Jan Lebbink, Bart Westendorp, Alain de Bruin
Software Mentions: 4
Published: about 5 years ago
10.1002/2211-5463.12982
Metabolomic analysis of fibrotic mice combined with public RNA‐Seq human lung data reveal potential diagnostic biomarker candidates for lung fibrosis
Cited by: 8
Author(s): Yosui Nojima, Yoshito Takeda, Yohei Maeda, Takeshi Bamba, Eiichiro Fukusaki, Mari Itoh, Kenji Mizuguchi, Atsushi Kumanogoh
Software Mentions: 4
Published: about 4 years ago
10.3389/fnbeh.2020.618180
PsyCoP – A Platform for Systematic Semi-Automated Behavioral and Cognitive Profiling Reveals Gene and Environment Dependent Impairments of Tcf4 Transgenic Mice Subjected to Social Defeat
Cited by: 8
Author(s): Paul Volkmann, Marius Stephan, Sven Krackow, Niels Rosendal Jensen, Moritz J. Rossner
Software Mentions: 4
Published: almost 4 years ago
10.3389/fcell.2021.688855
Transcriptomics Profiling Identifies Cisplatin-Inducible Death Receptor 5 Antisense Long Non-coding RNA as a Modulator of Proliferation and Metastasis in HeLa Cells
Cited by: 7
Author(s): Dilek Cansu Gürer, İpek Erdoğan, Ulvi Ahmadov, Merve Başol, Osama Sweef, Gulcin Cakan-Akdogan, Bünyamin Akgül
Software Mentions: 4
Published: over 3 years ago
10.3389/fcell.2021.686886
Platelet-Derived Growth Factor-D Activates Complement System to Propagate Macrophage Polarization and Neovascularization
Cited by: 5
Author(s): Ze Xiong, Qianqian Wang, Wanhong Li, Lijuan Huang, Jianing Zhang, Juanhua Zhu, Bingbing Xie, Shasha Wang, Haiqing Kuang, Xianchai Lin, Chunsik Lee, Anil Kumar, Xuri Li
Software Mentions: 4
Published: over 3 years ago
10.3389/fcell.2021.709498
The Dynamic Changes of Transcription Factors During the Development Processes of Human Biparental and Uniparental Embryos
Cited by: 3
Author(s): Chenxi Zhang, Conghui Li, Ling Yang, Lizhi Leng, Dragomirka Jovic, Jun Wang, Fang Fang, Guibo Li, Depeng Zhao, Xuemei Li, Lin Lin, Yonglun Luo, Lars Bolund, Jinrong Huang, Ge Lin, Fengping Xu
Software Mentions: 4
Published: about 3 years ago
10.3389/fcell.2021.649168
Pan-Cancer Genome-Wide DNA Methylation Analyses Revealed That Hypermethylation Influences 3D Architecture and Gene Expression Dysregulation in HOXA Locus During Carcinogenesis of Cancers
Cited by: 3
Author(s): Gang Liu, Zhenhao Liu, Xiaomeng Sun, Xiaoqiong Xia, Yunhe Liu, Lei Liu
Software Mentions: 4
Published: over 3 years ago
10.3389/fmicb.2021.658292
Cross-Talk Between Butyric Acid and Gut Microbiota in Ulcerative Colitis Following Fecal Microbiota Transplantation
Cited by: 21
Author(s): Haoming Xu, Honglan Huang, Jing Xu, Jie He, Chong Zhao, Yuling Peng, Hailan Zhao, Wenqi Huang, Chuangyu Cao, Yongjian Zhou, Yuqiang Nie
Software Mentions: 4
Published: over 3 years ago
10.3389/fmicb.2021.639913
Comparison of Microbial Communities in Colorado Potato Beetles (Leptinotarsa decemlineata Say) Collected From Different Sources in China
Cited by: 6
Author(s): Yanxue Yu, Yuhan Wang, Hongwei Li, Xiubo Yu, Wangpeng Shi, Junfeng Zhai
Software Mentions: 4
Published: over 3 years ago
10.3389/fmicb.2021.615416
Correlations Between Intestinal Microbial Community and Hematological Profile in Native Tibetans and Han Immigrants
Cited by: 7
Author(s): Yan Ma, Qin Ga, Ri-Li Ge, Shuang Ma
Software Mentions: 4
Published: over 3 years ago
10.3389/fmicb.2021.668644
Ecological Divergence Within the Enterobacterial Genus Sodalis: From Insect Symbionts to Inhabitants of Decomposing Deadwood
Cited by: 9
Author(s): Vojtěch Tláskal, Victor Satler Pylro, Lucia Žifčáková, Petr Baldrián
Software Mentions: 4
Published: over 3 years ago
10.3389/fmicb.2020.579290
Spatiotemporal Patterns in Diversity and Assembly Process of Marine Protist Communities of the Changjiang (Yangtze River) Plume and Its Adjacent Waters
Cited by: 8
Author(s): Xin Guo, Lianghuan Wu, Lingfeng Huang
Software Mentions: 4
Published: about 4 years ago
10.3389/fmolb.2021.653805
High Expression Levels of CDK1 and CDC20 in Patients With Lung Squamous Cell Carcinoma are Associated With Worse Prognosis
Cited by: 3
Author(s): Huan Deng, Hang Qin, Deyan Shen, Hangjie Ying, Yibi Zhang, Qinying Xu, Ming Chen
Software Mentions: 4
Published: over 3 years ago
10.3389/fmolb.2021.583028
CCR7 Has Potential to Be a Prognosis Marker for Cervical Squamous Cell Carcinoma and an Index for Tumor Microenvironment Change
Cited by: 4
Author(s): Weijie Tian, Penghui Feng, Jun Wang, Ting Yan, Qing-Feng Qin, Donglin Li, Wei Liang
Software Mentions: 4
Published: over 3 years ago
10.3389/fmolb.2020.571641
Identification of a Novel Tumor Microenvironment–Associated Eight-Gene Signature for Prognosis Prediction in Lung Adenocarcinoma
Cited by: 36
Author(s): Chi Ma, Huan Luo, Jing Cao, Xiangyu Zheng, Jinjun Zhang, Yanmin Zhang, Zongqiang Fu
Software Mentions: 4
Published: about 4 years ago