Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: pheatmap

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/pheatmap

Pretty Heatmaps
17 versions
Latest release: almost 6 years ago
77 dependent packages
37,681 downloads last month

Papers Mentioning pheatmap 2,572

10.3390/ijms221910367
Genome-Wide Identification, Evolution, and Comparative Analysis of B-Box Genes in Brassica rapa, B. oleracea, and B. napus and Their Expression Profiling in B. rapa in Response to Multiple Hormones and Abiotic Stresses
Cited by: 8
Author(s): Sonam Singh, Sushil Satish Chhapekar, Yinbo Ma, Jana Jeevan Rameneni, Sang Heon Oh, Jusang Kim, Yong Pyo Lim, Su Ryun Choi
Software Mentions: 1
Published: about 3 years ago
10.1042/BSR20181434
MicroRNA-140-5p inhibits cell proliferation, migration and promotes cell apoptosis in gastric cancer through the negative regulation of THY1-mediated Notch signaling
Cited by: 20
Author(s): Keng‐Liang Wu, Jun Zhang, Chao Lin, Zhigang Jie
Software Mentions: 1
Published: over 5 years ago
10.1002/2211-5463.12563
New biomarkers of Kawasaki disease identified by urine proteomic analysis
Cited by: 7
Author(s): Huimin Hu, Hongwu Du, Jiawen Cui, Deqin Feng, Zhenhong Du
Software Mentions: 1
Published: almost 6 years ago
10.1128/AEM.01908-20
Ruminal Degradation of Rumen-Protected Glucose Influences the Ruminal Microbiota and Metabolites in Early-Lactation Dairy Cows
Cited by: 17
Author(s): Yapin Wang, Xuemei Nan, Yiguang Zhao, Yue Wang, Linshu Jiang, Benhai Xiong
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12864-018-5251-3
Genomic identification and functional analysis of essential genes in Caenorhabditis elegans
Cited by: 9
Author(s): Shicheng Yu, Chaoran Zheng, Fan Zhou, David L. Baillie, Ann M. Rose, Zixin Deng, Jeffrey Shih-Chieh Chu
Software Mentions: 1
Published: almost 6 years ago
10.1534/g3.120.401880
High-Throughput Identification of Nuclear Envelope Protein Interactions in<i>Schizosaccharomyces pombe</i>Using an Arrayed Membrane Yeast-Two Hybrid Library
Cited by: 7
Author(s): Joseph M. Varberg, Jennifer M. Gardner, Scott McCroskey, Snehabala Saravanan, W. David Bradford, Sue L. Jaspersen
Software Mentions: 1
Published: almost 4 years ago
10.3390/genes7040012
De Novo Transcriptome Sequencing of Desert Herbaceous Achnatherum splendens (Achnatherum) Seedlings and Identification of Salt Tolerance Genes
Cited by: 19
Author(s): Jiangtao Liu, Yuelong Zhou, Changxin Luo, Yun Xiang, Lizhe An
Software Mentions: 1
Published: over 8 years ago
10.3390/genes7120111
Genome-Wide Survey Reveals Transcriptional Differences Underlying the Contrasting Trichome Phenotypes of Two Sister Desert Poplars
Cited by: 8
Author(s): Jianchao Ma, Xiaodong He, Xiaotao Bai, Zhimin Niu, Bingbing Duan, Ningning Chen, Xuemin Shao, Dongshi Wan
Software Mentions: 1
Published: almost 8 years ago
10.18632/aging.202606
Identification of miRNAs as diagnostic and prognostic markers in hepatocellular carcinoma
Cited by: 6
Author(s): Hao Liang, Mingxing Xu, Xiong Zhang, Kunpeng Hu, Jiarui Yang, Mingbo Cao, Zhaozhong Zhong, Zhicheng Yao, Meihai Deng, Bo Liu
Software Mentions: 1
Published: over 3 years ago
10.3390/biom9070293
Genome-Wide Identification and Expression Profiling of CBL-CIPK Gene Family in Pineapple (Ananas comosus) and the Role of AcCBL1 in Abiotic and Biotic Stress Response
Cited by: 36
Author(s): Mohammad Aslam, Beenish Fakher, Bello Hassan Jakada, Lihua Zhao, Shijiang Cao, Yan Cheng, Yuan Qin
Software Mentions: 1
Published: over 5 years ago
10.3390/biomedicines9060658
Brain-Specific Gene Expression and Quantitative Traits Association Analysis for Mild Cognitive Impairment
Cited by: 3
Author(s): Shaoxun Yuan, Haitao Li, Yu Gu, Xiao Sun
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-020-73655-3
Detection of tuberculosis in cynomolgus macaques (Macaca fascicularis) using a supplementary Monkey Interferon Gamma Releasing Assay (mIGRA)
Cited by: 11
Author(s): Saradee Warit, Pamaree Billamas, Nampueng Makhao, Sarinya Jaitrong, Tada Juthayothin, Wandee Yindeeyoungyeon, Kanchana Dokladda, Nat Smittipat, Taratorn Kemthong, Suthirote Meesawat, N Kongsombat, C Kraitat, Therdsak Prammananan, Tanapat Palaga, Angkana Chaiprasert, Suchinda Malaivijitnond
Software Mentions: 1
Published: about 4 years ago
10.3389/fmicb.2020.01533
A Systems-Wide Analysis of Proteolytic and Lipolytic Pathways Uncovers The Flavor-Forming Potential of The Gram-Positive Bacterium Macrococcus caseolyticus subsp. caseolyticus
Cited by: 19
Author(s): Shahneela Mazhar, Kieran N. Kilcawley, Colin Hill, Olivia McAuliffe
Software Mentions: 1
Published: over 4 years ago
10.3390/genes10070527
Genome-Wide Identification and Expression Analysis of the Metacaspase Gene Family in Gossypium Species
Cited by: 9
Author(s): Senmiao Fan, Àiyīng Liú, Zhen Zhang, Xianyan Zou, Xiao Jiang, Jinyong Huang, Liqiang Fan, Zhibin Zhang, Xiǎoyīng Dèng, Qún Gě, Wànkuí Gǒng, Jùnwén Lǐ, Jǔwǔ Gōng, Yùzhēn Shí, Kang Lei, Shuya Zhang, Tingting Jia, Lipeng Zhang, Yǒulù Yuán, Hǎihóng Shāng
Software Mentions: 1
Published: over 5 years ago
10.3390/genes10090701
The Soybean Laccase Gene Family: Evolution and Possible Roles in Plant Defense and Stem Strength Selection
Cited by: 34
Author(s): Quan Wang, Guang Li, Kang‐Cheng Zheng, Xiaobin Zhu, Jingjing Ma, Dongmei Wang, Kun Tang, Xingxing Feng, Jiantian Leng, Hui Yu, Suxin Yang
Software Mentions: 1
Published: about 5 years ago
10.18632/aging.104099
Comprehensive circular RNA expression profiling constructs a ceRNA network and identifies hsa_circ_0000673 as a novel oncogene in distal cholangiocarcinoma
Cited by: 5
Author(s): Xin Zhao, Xinxue Zhang, Zhigang Zhang, Zhe Liu, Jiang Zhu, Shaocheng Lyu, Lixin Li, Ren Lang, Qiang He
Software Mentions: 1
Published: about 4 years ago
10.3390/v13040671
Characterization of a Novel Group of Listeria Phages That Target Serotype 4b Listeria monocytogenes
Cited by: 8
Author(s): Yaxiong Song, Tracey L. Peters, Daniel W. Bryan, Lauren K. Hudson, Thomas G. Denes
Software Mentions: 1
Published: over 3 years ago
10.18632/aging.102450
Circadian clock associates with tumor microenvironment in thoracic cancers
Cited by: 23
Author(s): Yong Yang, Guangda Yuan, Haifeng Xie, Tengteng Wei, Donglin Zhu, Jinlong Cui, Xiaoqiang Liu, Rongming Shen, Yimeng Zhu, Xiaosong Yang
Software Mentions: 1
Published: almost 5 years ago
10.15252/embr.202051981
<i>N</i> ‐acetylaspartate release by glutaminolytic ovarian cancer cells sustains protumoral macrophages
Cited by: 19
Author(s): Alessio Menga, Maria Favia, Iolanda Spera, Maria Carmela Vegliante, Rosanna Gissi, Anna Grassi, Luna Laera, Alessandro Campanella, Andrea Gerbino, Giovanna Carrà, Marcella Canton, Vera Loizzi, Ciro Leonardo Pierri, Gennaro Cormio, Massimiliano Mazzone, Alessandra Castegna
Software Mentions: 1
Published: over 3 years ago
10.3390/genes10110914
Genome-Wide Analysis of Basic Helix–Loop–Helix Superfamily Members Reveals Organization and Chilling-Responsive Patterns in Cabbage (Brassica oleracea var. capitata L.)
Cited by: 8
Author(s): Shibo Xi, Wei Zhang, Fangwei Yu, Shenyun Wang, Jianbin Li, Jun Tang, Zhigang Dai
Software Mentions: 1
Published: about 5 years ago
10.3390/v11111070
A Multi-Omics Study of Chicken Infected by Nephropathogenic Infectious Bronchitis Virus
Cited by: 17
Author(s): Puzhi Xu, Ping Liu, Changming Zhou, Yan Shi, Qingpeng Wu, Yulin Yang, Guyue Li, Guoliang Hu, Xiaomin Guo
Software Mentions: 1
Published: about 5 years ago
10.1128/mBio.02767-19
CD71 <sup>+</sup> Erythroid Cells Exacerbate HIV-1 Susceptibility, Mediate <i>trans</i> -Infection, and Harbor Infective Viral Particles
Cited by: 28
Author(s): Afshin Namdar, Garett Dunsmore, Shima Shahbaz, Petya Koleva, Lai Xu, Juan Jovel, Stan Houston, Shokrollah Elahi
Software Mentions: 1
Published: almost 5 years ago
10.18632/oncotarget.27943
The acylfulvene alkylating agent, LP-184, retains nanomolar potency in non-small cell lung cancer carrying otherwise therapy-refractory mutations
Cited by: 2
Author(s): Aditya Kulkarni, Joseph McDermott, Umesh Kathad, Rama Modali, Jaepyeong Cha, Panna Sharma, Kishor Bhatia
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-020-75853-5
Glucocorticoid-dependent transcription in skin requires epidermal expression of the glucocorticoid receptor and is modulated by the mineralocorticoid receptor
Cited by: 3
Author(s): Lisa M. Sevilla, Judit Bigas, Álvaro Chiner‐Oms, Iñaki Comas, Vicente Sentandreu, Paloma Pérez
Software Mentions: 1
Published: about 4 years ago
10.1128/mBio.02657-19
Microbiomes Reduce Their Host’s Sensitivity to Interspecific Interactions
Cited by: 16
Author(s): Sara L. Jackrel, Kathryn C. Schmidt, Bradley J. Cardinale, Vincent J. Denef
Software Mentions: 1
Published: over 4 years ago
10.1186/s13018-020-01780-w
MiR-708 inhibits MC3T3-E1 cells against H2O2-induced apoptosis through targeting PTEN
Cited by: 11
Author(s): Wei Zhang, Shengyu Cui, Ye Hong, Xiao Feng Zhu, Wei Liu, Youjia Xu
Software Mentions: 1
Published: over 4 years ago
10.3389/fcell.2020.00450
Conditional Knockout of PKC-δ in Osteoclasts Favors Bone Mass Accrual in Males Due to Decreased Osteoclast Function
Cited by: 5
Author(s): Shangfu Li, Tianwei He, Depeng Wu, Liangming Zhang, Ruiqiang Chen, Bin Liu, Jinbo Yuan, Jennifer Tickner, An Qin, Jiake Xu, Limin Rong
Software Mentions: 1
Published: over 4 years ago
10.1128/mBio.01325-20
Lateral Gene Transfer Drives Metabolic Flexibility in the Anaerobic Methane-Oxidizing Archaeal Family <i>Methanoperedenaceae</i>
Cited by: 48
Author(s): Andy O. Leu, Simon Jon McIlroy, Jun Ye, Donovan H. Parks, Victoria J. Orphan, Gene W. Tyson
Software Mentions: 1
Published: over 4 years ago
10.1128/mBio.00728-20
Pan-GWAS of Streptococcus agalactiae Highlights Lineage-Specific Genes Associated with Virulence and Niche Adaptation
Cited by: 41
Author(s): Andrea Gori, Odile B. Harrison, Ethwako Mlia, Yo Nishihara, Jia Mun Chan, Jacquline Msefula, Macpherson Mallewa, Queen Dube, Todd D. Swarthout, Angela H. Nobbs, Martin Maiden, Neil French, Robert S. Heyderman
Software Mentions: 1
Published: over 4 years ago
10.1080/21505594.2020.1747799
Molecularly defined extraintestinal pathogenic <i>Escherichia coli</i> status predicts virulence in a murine sepsis model better than does virotype, individual virulence genes, or clonal subset among <i>E. coli</i> ST131 isolates
Cited by: 12
Author(s): Irene Merino, Stephen Porter, Brian Johnston, Connie Clabots, Paul Thuras, Patrícia Ruíz-Garbajosa, Rafael Cantón, James R. Johnson
Software Mentions: 1
Published: over 4 years ago
10.3390/genes11080863
Extensive Genetic Connectivity and Historical Persistence Are Features of Two Widespread Tree Species in the Ancient Pilbara Region of Western Australia
Cited by: 3
Author(s): Heidi Nistelberger, Rachel M. Binks, Stephen van Leeuwen, David Coates, Shelley McArthur, B. MacDonald, Margaret Hankinson, Margaret Byrne
Software Mentions: 1
Published: over 4 years ago
10.1155/2021/9798231
Identification of a Nine Immune-Related lncRNA Signature as a Novel Diagnostic Biomarker for Hepatocellular Carcinoma
Cited by: 15
Author(s): Mengqin Yuan, Yanqing Wang, Qinqian Sun, Shiyi Liu, Xian Shu, Fangfang Dai, Li Zhang, Yaqi Fan, Feiyan Wang, Dongyong Yang, Y. Zheng, Zhanfeng Deng, Wei Tan, Yeqiang Liu, Yanxiang Cheng
Software Mentions: 1
Published: almost 4 years ago
10.1186/s13018-021-02392-8
Biomarkers mining for spinal cord injury based on integrated multi-transcriptome expression profile data
Cited by: 6
Author(s): Chongcheng Gong, Lin Liu, Yang Shen
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-020-76497-1
NLRP3 inflammasome deficiency attenuates metabolic disturbances involving alterations in the gut microbial profile in mice exposed to high fat diet
Cited by: 20
Author(s): Marina Sokolova, Kuan Yang, Simen Hyll Hansen, Mieke C. Louwe, Martin Kummen, Johannes Espolin Roksund Hov, Ivar Sjaastad, Rolf K. Berge, Bente Halvorsen, Pål Aukrust, Arne Yndestad, Trine Ranheim
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12967-018-1640-2
Systematic analysis of lncRNA–miRNA–mRNA competing endogenous RNA network identifies four-lncRNA signature as a prognostic biomarker for breast cancer
Cited by: 188
Author(s): Chi Fan, Lei Ma, Ning Liu
Software Mentions: 1
Published: about 6 years ago
10.3390/genes12040520
Actin-Related Protein 4 Interacts with PIE1 and Regulates Gene Expression in Arabidopsis
Cited by: 6
Author(s): Wen-Feng Nie, Jinyu Wang
Software Mentions: 1
Published: over 3 years ago
10.1155/2021/6635936
Long Noncoding RNA RP11-357H14.17 Plays an Oncogene Role in Gastric Cancer by Activating ATF2 Signaling and Enhancing Treg Cells
Cited by: 9
Author(s): Xiaoli Tang, Wenting Wang, Meixiang Zhang, Chunlei Zuo, Hu Chengxia
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-020-78721-4
Phenotypic and genetic characterization of differential galacto-oligosaccharide utilization in Lactobacillus plantarum
Cited by: 11
Author(s): Jori Führen, Markus Schwalbe, Lucía Peralta-Marzal, Christiane Rösch, Henk A. Schols, Michiel Kleerebezem
Software Mentions: 1
Published: almost 4 years ago
10.3389/fmicb.2021.708009
A Comparative Transcriptome Between Anti-drug Sensitive and Resistant Candida auris in China
Cited by: 3
Author(s): Wenkai Zhou, Xiuzhen Li, Yiqing Lin, Wei Yan, Shuling Jiang, Xiaotian Huang, Xinglong Yang, Dan Qiao, Na Li
Software Mentions: 1
Published: over 3 years ago
10.1016/j.omtn.2019.04.013
MicroRNA-1305 Inhibits the Stemness of LCSCs and Tumorigenesis by Repressing the UBE2T-Dependent Akt-Signaling Pathway
Cited by: 35
Author(s): Xiaoyong Wei, Xiaolong You, Jianlong Zhang, Cuncai Zhou
Software Mentions: 1
Published: over 5 years ago
10.17179/excli2020-3083
Angiotensin receptor blocker Losartan inhibits tumor growth of colorectal cancer.
Cited by: 5
Author(s): Milad Hashemzehi, Farzad Rahmani, Mahdieh Khoshakhlagh, Amir Avan, Fereshteh Asgharzadeh, Farnaz Barneh, Reyhaneh Moradi‐Marjaneh, Atena Soleimani, Hamid Fiuji, Gordon A. Ferns, Mikhail Ryzhikov, Mohieddin Jafari, Majid Khazaei, Seyed Mahdi Hassanian
Software Mentions: 1
Published: over 3 years ago
10.1590/1678-4685-GMB-2020-0054
A comparison of mRNA and circRNA expression between squamous cell carcinoma and adenocarcinoma of the lungs
Cited by: 4
Author(s): Min Yu, Yingxuan Tian, Min Wu, Jinglong Gao, Yuan Wang, Fuqiang Liu, Sen Sheng, Shufen Huo, Jun Bai
Software Mentions: 1
Published: almost 5 years ago
10.1002/mgg3.1404
Development of an immune‐related prognostic model for pediatric acute lymphoblastic leukemia patients
Cited by: 3
Author(s): Xi Quan, Nan Zhang, Ying Chen, Hanqing Zeng, Junming Deng
Software Mentions: 1
Published: over 4 years ago
10.1186/s13072-016-0109-x
MS_HistoneDB, a manually curated resource for proteomic analysis of human and mouse histones
Cited by: 38
Author(s): Sara El Kennani, Annie Adrait, Alexey K. Shaytan, Saadi Khochbin, Christophe Bruley, Anna R. Panchenko, David Landsman, Delphine Pflieger, Jérôme Govin
Software Mentions: 1
Published: almost 8 years ago
10.1038/s41598-020-79733-w
Comparative genomics and metabolomics analysis of Riemerella anatipestifer strain CH-1 and CH-2
Cited by: 2
Author(s): Ji‐Bin Liu, Anchun Cheng, Mingshu Wang, Mafeng Liu, Dekang Zhu, Qiao Yang, Ying Wu, Renyong Jia, Shun Chen, Xinxin Zhao, Shaqiu Zhang, Juan Huang, Xumin Ou, Sai Mao, Qun Gao, Xingjian Wen, Ling Zhang, Yunya Liu, Yanling Yu, Bin Tian, Leichang Pan, Mujeeb Ur Rehman, Xiaoyue Chen
Software Mentions: 1
Published: almost 4 years ago
10.3389/fmicb.2021.610370
Characterization of the Oral Microbiome of Medicated Type-2 Diabetes Patients
Cited by: 15
Author(s): Ana C. Almeida-Santos, Daniela Martins-Mendes, Magdalena Gayà-Vidal, L. Pérez‐Pardal, Albano Beja‐Pereira
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12864-020-6479-2
Genome-wide analysis of the NAC transcription factor family in broomcorn millet (Panicum miliaceum L.) and expression analysis under drought stress
Cited by: 27
Author(s): Zhongying Shan, Yanmiao Jiang, Haiquan Li, Jian-Wei Guo, Ming Dong, Jianan Zhang, Guoqing Liu
Software Mentions: 1
Published: almost 5 years ago
10.3390/molecules25010137
A Widely Metabolomic Analysis Revealed Metabolic Alterations of Epimedium Pubescens Leaves at Different Growth Stages
Cited by: 12
Author(s): Zhenxian Qin, Dengqun Liao, Yalan Chen, Chenyang Zhang, Ruipeng An, Qing Zeng, Xianen Li
Software Mentions: 1
Published: almost 5 years ago
10.3390/antiox10081225
Discovering the Protective Effects of Resveratrol on Aflatoxin B1-Induced Toxicity: A Whole Transcriptomic Study in a Bovine Hepatocyte Cell Line
Cited by: 10
Author(s): Marianna Pauletto, Mery Giantin, Roberta Tolosi, Irene Bassan, Andrea Barbarossa, Anna Zaghini, Mauro Dacasto
Software Mentions: 1
Published: over 3 years ago
10.1155/2020/1618527
Recurrence-Associated Multi-RNA Signature to Predict Disease-Free Survival for Ovarian Cancer Patients
Cited by: 8
Author(s): Yu Zhang, Qingjian Ye, Junxian He, Peigen Chen, Jing Wan, Jing Li, Yongtao Yang, Xiaomao Li
Software Mentions: 1
Published: almost 5 years ago
10.1155/2019/1902732
Genomic Analysis of Chilean Strains of<i>Campylobacter jejuni</i>from Human Faeces
Cited by: 13
Author(s): Arturo Levicán, Ignacio Ramos-Tapia, Isabel Briceño, Francisco Guerra, Benjamín Mena, Carmen Varela, Lorena Porte
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2015.00356
Shifts in methanogenic community composition and methane fluxes along the degradation of discontinuous permafrost
Cited by: 52
Author(s): Susanne Liebner, Lars Ganzert, Andrea Kiss, Shuai Yang, Dirk Wagner, Mette M. Svenning
Software Mentions: 1
Published: over 9 years ago
10.3390/molecules26030745
Fungicidal Activity of Volatile Organic Compounds Emitted by Burkholderia gladioli Strain BBB-01
Cited by: 15
Author(s): Yingtong Lin, Cheng-Cheng Lee, Wei-Ming Leu, Je-Jia Wu, Yu-Cheng Huang, Menghsiao Meng
Software Mentions: 1
Published: almost 4 years ago
10.3389/fmicb.2020.00792
Metabolic Insights Into Infochemicals Induced Colony Formation and Flocculation in Scenedesmus subspicatus Unraveled by Quantitative Proteomics
Cited by: 10
Author(s): Sebastiana Roccuzzo, Narciso Couto, Esther Karunakaran, Rahul Vijay Kapoore, Thomas O. Butler, Joy Mukherjee, Erika M Hansson, Andrew P. Beckerman, Jagroop Pandhal
Software Mentions: 1
Published: over 4 years ago
10.1155/2020/2073690
Identification of Potential Biomarkers Associated with Basal Cell Carcinoma
Cited by: 5
Author(s): Yong Liu, Hui Liu, Queqiao Bian
Software Mentions: 1
Published: over 4 years ago
10.3390/molecules22122255
Identification of the Sex-Biased Gene Expression and Putative Sex-Associated Genes in Eucommia ulmoides Oliver Using Comparative Transcriptome Analyses
Cited by: 14
Author(s): Wencai Wang, Xianzhi Zhang
Software Mentions: 1
Published: almost 7 years ago
10.3389/fcell.2019.00271
The Long Non-coding RNA ZFAS1 Sponges miR-193a-3p to Modulate Hepatoblastoma Growth by Targeting RALY via HGF/c-Met Pathway
Cited by: 20
Author(s): Xichun Cui, Zhifang Wang, Liwen Liu, Xin Liu, Dandan Zhang, Jianhao Li, Jianming Zhu, Juntao Pan, Da Zhang, Guangying Cui
Software Mentions: 1
Published: about 5 years ago
10.1186/s13018-021-02545-9
Vitamin D inhibits TNF-α induced apoptosis of human nucleus pulposus cells through regulation of NF-kB signaling pathway
Cited by: 11
Author(s): Cun Zhang, Tong Tong, Dechao Miao, Linfeng Wang
Software Mentions: 1
Published: over 3 years ago
10.3390/antibiotics9050271
Mining the Biosynthetic Potential for Specialized Metabolism of a Streptomyces Soil Community
Cited by: 18
Author(s): Matthieu Nicault, Abdoul-Razak Tidjani, Anthony Gauthier, Stéphane Dumarçay, Éric Gelhaye, Cyril Bontemps, Pierre Leblond
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2020.581698
Horizontal Gene Transfer and Tandem Duplication Shape the Unique CAZyme Complement of the Mycoparasitic Oomycetes Pythium oligandrum and Pythium periplocum
Cited by: 8
Author(s): Dong Liang, Christian B. Andersen, Ramesh R. Vetukuri, Daolong Dou, Laura J. Grenville‐Briggs
Software Mentions: 1
Published: about 4 years ago
10.3390/ijms21186782
Gut Microbiota-Mediated Inflammation and Gut Permeability in Patients with Obesity and Colorectal Cancer
Cited by: 55
Author(s): Lidia Sánchez-Alcoholado, Rafael Ordóñez, A. Otero, Isaac Plaza-Andrade, Aurora Laborda-Illanes, J. A. Medina, Bruno Ramos‐Molina, Jaime Gómez-Millán, María Isabel Queipo-Ortuño
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-021-83497-2
Effects of maize (Zea mays) genotypes and microbial sources in shaping fall armyworm (Spodoptera frugiperda) gut bacterial communities
Cited by: 17
Author(s): Charles J. Mason, Kelli Hoover, Gary W. Felton
Software Mentions: 1
Published: over 3 years ago
10.1128/mSphere.01002-20
Dichloroacetate and Pyruvate Metabolism: Pyruvate Dehydrogenase Kinases as Targets Worth Investigating for Effective Therapy of Toxoplasmosis
Cited by: 5
Author(s): Mariana Galvão Ferrarini, Líndice Mitie Nisimura, Richard M. B. M. Girard, Mayke Bezerra Alencar, Mariana Sayuri Ishikawa Fragoso, Carlla Assis Araújo-Silva, Alan de Almeida Veiga, Ana Paula Ressetti Abud, Sheila Cristina Nardelli, Rossiane C. Vommaro, Ariel Mariano Silber, Marie France-Sagot, Andréa Rodrigues Ávila
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-84875-6
The effect of flue-curing procedure on the dynamic change of microbial diversity of tobaccos
Cited by: 9
Author(s): Binbin Hu, Kaiyuan Gu, Jiangshiqi Gong, Ke Zhang, Dan Chen, Xian He, Leo Chen, Kaixian Gao, Yan Jin, Kun Huang, Yuyan Zhu, Congming Zou
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2021.669785
Different Cultivation Environments Affect the Yield, Bacterial Community and Metabolites of Cordyceps cicadae
Cited by: 9
Author(s): Zhaoying Zeng, Dan Mou, Li Luo, Wenlin Zhong, Dong‐Tsamn Lin, Xiao Zou
Software Mentions: 1
Published: over 3 years ago
10.1186/s12943-017-0610-2
ITIH5 mediates epigenetic reprogramming of breast cancer cells
Cited by: 24
Author(s): Michael Rose, Vera Kloten, Erik Noetzel, Lukas Gola, Josef Ehling, Timon Heide, Steffen K. Meurer, Aljona Gaiko-Shcherbak, Antonio Sechi, Sebastian Huth, Ralf Weiskirchen, Oliver Klaas, Wiebke Antonopoulos, Qiong Lin, Wolfgang Wagner, Jürgen Veeck, Felix Gremse, Julia Steitz, Ruth Knüchel, Edgar Dahl
Software Mentions: 1
Published: over 7 years ago
10.1186/s12864-017-4114-7
Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor
Cited by: 10
Author(s): Yohann Daguerre, Elisabetta Levati, Joske Ruytinx, Émilie Tisserant, Emmanuel Morin, Annegret Kohler, Barbara Montanini, Simone Ottonello, Annick Brun, Claire Veneault‐Fourrey, Francis Martin
Software Mentions: 1
Published: about 7 years ago
10.3390/antibiotics9110823
Antimicrobial Susceptibility Patterns and Wild-Type MIC Distributions of Anaerobic Bacteria at a German University Hospital: A Five-Year Retrospective Study (2015–2019)
Cited by: 8
Author(s): Mohamed Tarek Badr, Benjamin Blümel, Sandra Baumgartner, Johanna Komp, Georg Häcker
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-021-85433-w
Integrative analysis of the microbiome and metabolome in understanding the causes of sugarcane bitterness
Cited by: 16
Author(s): Weijuan Huang, Donglei Sun, Lijun Chen, Yuxing An
Software Mentions: 1
Published: over 3 years ago
10.1155/2021/5013565
Analysis of Differentially Expressed Genes in the Dentate Gyrus and Anterior Cingulate Cortex in a Mouse Model of Depression
Cited by: 9
Author(s): Yanfei Wei, Keming Qi, Yi Yu, Wei Lü, Wei Xu, Cheng-Zi Yang, Lin Yu
Software Mentions: 1
Published: almost 4 years ago
10.3390/jpm11050363
Integrative Systems Biology Approaches to Identify Potential Biomarkers and Pathways of Cervical Cancer
Cited by: 9
Author(s): Arafat Rahman Oany, Md. Younus Mia, Tahmina Pervin, Salem A. Alyami, Mohammad Ali Moni
Software Mentions: 1
Published: over 3 years ago
10.1186/1471-2164-15-45
The transcriptome of the NZ endemic sea urchin Kina (Evechinus chloroticus)
Cited by: 23
Author(s): Gareth Benjamin Gillard, Daniel J. Garama, Chris M. Brown
Software Mentions: 1
Published: almost 11 years ago
10.3390/antibiotics10050555
Biological Properties of Bee Bread Collected from Apiaries Located across Greece
Cited by: 17
Author(s): Nikos Asoutis Didaras, Ioannis Kafantaris, Tilemachos G. Dimitriou, Chrysanthi Mitsagga, Katerina Karatasou, Ioannis Giavasis, Dimitris Stagos, Grigoris D. Amoutzias, Fani Hatjina, Dimitris Mossialos
Software Mentions: 1
Published: over 3 years ago
10.3390/ijms17111814
Assessing Heterogeneity of Osteolytic Lesions in Multiple Myeloma by 1H HR-MAS NMR Metabolomics
Cited by: 5
Author(s): Laurette Tavel, Francesca Fontana, Josè Manuel Garcia Manteiga, Silvia Mari, E. Mariani, Enrico Caneva, Roberto Sitia, F. Camnasio, Magda Marcatti, Simone Cenci, Giovanna Musco
Software Mentions: 1
Published: about 8 years ago
10.1038/s41598-021-86511-9
Molecular mechanisms of esophageal epithelial regeneration following repair of surgical defects with acellular silk fibroin grafts
Cited by: 3
Author(s): Gökhan Gündoğdu, Mehmet Tosun, Duncan R. Morhardt, Ali Hashemi Gheinani, Khalid Algarrahi, Xuehui Yang, Kyle Costa, Cinthia Galvez Alegria, Rosalyn M. Adam, Wei Yang, Joshua R. Mauney
Software Mentions: 1
Published: over 3 years ago
10.1093/gigascience/giz115
Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome
Cited by: 33
Author(s): Bo Song, Yue Song, Yuan Fang, Elizabeth Balyejusa Kizito, Sandra Ndagire Kamenya, Pamela Nahamya Kabod, Huan Liu, Samuel Muthemba, Robert Kariba, Joyce Njuguna, Solomon Maina, Francesca Stomeo, Appolinaire Djikeng, Prasad S. Hendre, Xiaoli Chen, Wenbin Chen, Xiuli Li, Wenjing Sun, Sibo Wang, Shifeng Cheng, Alice Muchugi, Ramni Jamnadass, Howard Shapiro, Allen Van Deynze, Huanming Yang, Jian Wang, Xun Xu, Damaris Achieng Odeny, Xin Liu
Software Mentions: 1
Published: about 5 years ago
10.3390/microorganisms9081559
Culture Degeneration Reduces Sex-Related Gene Expression, Alters Metabolite Production and Reduces Insect Pathogenic Response in Cordyceps militaris
Cited by: 5
Author(s): Peter A. D. Wellham, Abdul Hafeez, Andrej Gregori, Matthias Brock, Dong-Hyun Kim, David Chandler, Cornelia H. de Moor
Software Mentions: 1
Published: over 3 years ago
10.3390/microorganisms9081577
Comparative Genomics Revealing Insights into Niche Separation of the Genus Methylophilus
Cited by: 0
Author(s): Na Lin, Ye Tao, Peixin Gao, Yan Xu, Peng Xing
Software Mentions: 1
Published: over 3 years ago
10.3390/ijms17111924
Varietal Dependence of GLVs Accumulation and LOX-HPL Pathway Gene Expression in Four Vitis vinifera Wine Grapes
Cited by: 18
Author(s): Qiu-Man Xu, Xiaoqing Xu, Keji Yu, Baoqing Zhu, Yi-Bin Lan, Chang‐Qing Duan, Qiu-Hong Pan
Software Mentions: 1
Published: almost 8 years ago
10.3389/fcell.2021.620248
Investigating Molecular Determinants of Cancer Cell Resistance to Ionizing Radiation Through an Integrative Bioinformatics Approach
Cited by: 8
Author(s): Halil Ibrahim Toy, Gökhan Karakülah, Panagiota I. Kontou, Hani Alotaibi, Alexandros G. Georgakilas, Athanasia Pavlopoulou
Software Mentions: 1
Published: over 3 years ago
10.1186/s13613-021-00899-1
Platelet activation in critically ill COVID-19 patients
Cited by: 55
Author(s): Nader Yatim, Jérémy Boussier, Richard Chocron, Jérôme Hadjadj, Aurélien Philippe, Nicolas Gendron, Laura Barnabei, Bruno Charbit, Tali‐Anne Szwebel, Nicolas Carlier, Frédéric Pène, Célia Azoulay, Lina Khider, Tristan Mirault, Jean‐Luc Diehl, Coralie L. Guerin, Frédéric Rieux‐Laucat, Darragh Duffy, Solen Kernéis, David Smadja, Benjamin Terrier
Software Mentions: 1
Published: over 3 years ago
10.1186/s12872-020-01527-9
Identification of transcription factors MYC and C/EBPβ mediated regulatory networks in heart failure based on gene expression omnibus datasets
Cited by: 2
Author(s): Haiwei Wang, Xinrui Wang, Liangpu Xu, Hua Cao
Software Mentions: 1
Published: over 4 years ago
10.3390/microorganisms7120678
Insights into Antagonistic Interactions of Multidrug Resistant Bacteria in Mangrove Sediments from the South Indian State of Kerala
Cited by: 12
Author(s): Madangchanok Imchen, Ravali Krishna Vennapu, Preetam Ghosh, Ranjith Kumavath
Software Mentions: 1
Published: almost 5 years ago
10.3390/ijms18122705
Differential Expression of VvLOXA Diversifies C6 Volatile Profiles in Some Vitis vinifera Table Grape Cultivars
Cited by: 19
Author(s): Qiu-Man Xu, Lina Sun, Xiaoqing Xu, Baoqing Zhu, Huini Xu
Software Mentions: 1
Published: almost 7 years ago
10.1186/s40364-020-00259-4
Development of acoustically isolated extracellular plasma vesicles for biomarker discovery in allogeneic hematopoietic stem cell transplantation
Cited by: 5
Author(s): Hooi Ching Lim, Shamit Soneji, Róbert Pálmason, Stig Lenhoff, Thomas Laurell, Stefan Scheding
Software Mentions: 1
Published: almost 4 years ago
10.3390/ijms19041154
Identification and Evolution of TGF-β Signaling Pathway Members in Twenty-Four Animal Species and Expression in Tilapia
Cited by: 36
Author(s): Shuqing Zheng, Juan Long, Zhilong Liu, Wenjing Tao, Deshou Wang
Software Mentions: 1
Published: over 6 years ago
10.3389/fcell.2020.00625
The Dysregulation and Prognostic Analysis of STRIPAK Complex Across Cancers
Cited by: 8
Author(s): Ruiling Xie, Feng Wen, Yong Qin
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-021-89294-1
A candidate gene identified in converting platycoside E to platycodin D from Platycodon grandiflorus by transcriptome and main metabolites analysis
Cited by: 12
Author(s): Xinglong Su, Yingying Liu, Lu Han, Zhaojian Wang, Mengyang Cao, Liping Wu, Weimin Jiang, Fancheng Meng, Xiaohu Guo, Nianjun Yu, Shuangying Gui, Shihai Xing, Daiyin Peng
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2020.00138
Formation of a Mixed-Species Biofilm Is a Survival Strategy for Unculturable Lactic Acid Bacteria and Saccharomyces cerevisiae in Daqu, a Chinese Traditional Fermentation Starter
Cited by: 40
Author(s): Yu Fan, Xiaoning Huang, Jing Yu Chen, Bei‐Zhong Han
Software Mentions: 1
Published: almost 5 years ago
10.3390/microorganisms9040782
Different Responses of Bacterial and Archaeal Communities in River Sediments to Water Diversion and Seasonal Changes
Cited by: 12
Author(s): Jiali Lv, Yangdan Niu, Rong Yuan, Shiqin Wang
Software Mentions: 1
Published: over 3 years ago
10.1186/s41065-021-00174-0
Development and analysis of long non-coding RNA-associated competing endogenous RNA network for osteosarcoma metastasis
Cited by: 2
Author(s): Yucheng Fu, Qi Liu, Qiyuan Bao, Junxiang Wen, Zhuochao Liu, Yuehao Hu, Guoyu He, Cheng Peng, Yanguang Xu, Weibin Zhang
Software Mentions: 1
Published: almost 4 years ago
10.1186/s13048-019-0557-6
Alteration of tumor associated neutrophils by PIK3CA expression in endometrial carcinoma from TCGA data
Cited by: 12
Author(s): Yinglian Pan, Jia Li, Yuzhu Liu, Yixu Han, Qingchun Deng
Software Mentions: 1
Published: about 5 years ago
10.1080/15592294.2020.1767372
Neuronal <i>Lhx1</i> expression is regulated by DNMT1-dependent modulation of histone marks
Cited by: 15
Author(s): Judit Symmank, Cathrin Bayer, Julia Reichard, Daniel Pensold, Geraldine Zimmer-Bensch
Software Mentions: 1
Published: over 4 years ago
10.1186/s40659-020-00291-6
Genome-wide characterization of the abscisic acid-, stress- and ripening-induced (ASR) gene family in wheat (Triticum aestivum L.)
Cited by: 17
Author(s): Huawei Li, Haiying Guan, Qicui Zhuo, Zongshuai Wang, Shengdong Li, Jisheng Si, Bin Zhang, Bo Feng, Ling An Kong, Fahong Wang, Wenhua Zheng, Lishun Zhang
Software Mentions: 1
Published: over 4 years ago
10.1038/s41438-018-0027-0
The grapevine kinome: annotation, classification and expression patterns in developmental processes and stress responses
Cited by: 29
Author(s): Kaikai Zhu, Xiaolong Wang, Jinyi Liu, Jun Tang, Qunkang Cheng, Jay Chen, Zong‐Ming Cheng
Software Mentions: 1
Published: over 6 years ago
10.3389/fmicb.2020.572642
Comparative Genomic Analysis Reveals Genetic Mechanisms of the Variety of Pathogenicity, Antibiotic Resistance, and Environmental Adaptation of Providencia Genus
Cited by: 17
Author(s): Chao Yuan, Wei Yi, Si Zhang, Juan Cheng, Xiaolei Cheng, Chengqian Qian, Yuhui Wang, Yang Zhang, Zhiqiu Yin, Hong Chen
Software Mentions: 1
Published: about 4 years ago
10.1038/s41438-019-0205-8
Auxin regulation involved in gynoecium morphogenesis of papaya flowers
Cited by: 10
Author(s): Ping Zhou, Mahpara Fatima, Xinyi Ma, Juan Liu, Ray Ming
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-021-90887-z
Role of cytoplasmic localization of maspin in promoting cell invasion in breast cancer with aggressive phenotype
Cited by: 5
Author(s): Tomohiko Sakabe, Makoto Wakahara, Goshi Shiota, Yoshihisa Umekita
Software Mentions: 1
Published: over 3 years ago
10.3390/ijms19123888
Morphological Characterization of Root System Architecture in Diverse Tomato Genotypes during Early Growth
Cited by: 16
Author(s): Aurora Alaguero-Cordovilla, Francisco Javier Gran-Gómez, Sergio Tormos-Moltó, José Manuel Pérez-Pérez
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41438-020-0331-3
Genome-wide identification of microRNAs involved in the regulation of fruit ripening and climacteric stages in melon (Cucumis melo)
Cited by: 19
Author(s): Selinge Bai, Yunyun Tian, Chao Tan, Shunbuer Bai, Jinfeng Hao, Agula Hasi
Software Mentions: 1
Published: over 4 years ago