Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: pheatmap

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/pheatmap

Pretty Heatmaps
17 versions
Latest release: almost 6 years ago
77 dependent packages
37,681 downloads last month

Papers Mentioning pheatmap 2,572

10.3389/fcell.2021.632372
Inhibition of TGF-β/Smad3 Signaling Disrupts Cardiomyocyte Cell Cycle Progression and Epithelial–Mesenchymal Transition-Like Response During Ventricle Regeneration
Cited by: 8
Author(s): Yuanyuan Peng, Wenyuan Wang, Yunzheng Fang, Haichen Hu, Nannan Chang, Meijun Pang, Ye-Fan Hu, Xueyu Li, Liang Han, Jing-Wei Xiong, Ruilin Zhang
Software Mentions: 1
Published: over 3 years ago
10.1186/s12935-020-01407-4
Screening and verification of long noncoding RNA promoter methylation sites in hepatocellular carcinoma
Cited by: 6
Author(s): Zhuo Lin, Xiaofeng Ni, Shengjie Dai, Hao Chen, Jianhui Chen, Boda Wu, Jian‐Yang Ao, Ke–Qing Shi, Hongwei Sun
Software Mentions: 1
Published: over 4 years ago
10.18632/oncotarget.19916
Establishment of a neuroendocrine prostate cancer model driven by the RNA splicing factor SRRM4
Cited by: 20
Author(s): Yinan Li, Ruiqi Chen, Mary Bowden, Fan Mo, Yen-Yi Lin, Martin Gleave, Colin C. Collins, Xuesen Dong
Software Mentions: 1
Published: over 7 years ago
10.1186/s12864-017-3653-2
Defining the transcriptomic landscape of the developing enteric nervous system and its cellular environment
Cited by: 30
Author(s): Sweta Roy-Carson, Kevin Natukunda, Hsien-Chao Chou, Narinder Pal, Caitlin Farris, Stephan Schneider, Julie A. Kuhlman
Software Mentions: 1
Published: over 7 years ago
10.18632/oncotarget.18802
Dexamethasone affects cell growth/apoptosis/chemosensitivity of colon cancer via glucocorticoid receptor α/NF-κB
Cited by: 23
Author(s): Jia He, Jinming Zhou, Weiwen Yang, Qi Zhou, Xi Liu, Xiaowu Pang, Jianjun Li, Feng Pan, Houjie Liang
Software Mentions: 1
Published: over 7 years ago
10.3389/fcell.2021.686395
Global Screening of LUBAC and OTULIN Interacting Proteins by Human Proteome Microarray
Cited by: 0
Author(s): Lijie Zhou, Yingwei Ge, Yesheng Fu, Bo Wu, Yong Zhang, Lei Li, Chun-Ping Chu, Siying Wang, Lingqiang Zhang
Software Mentions: 1
Published: over 3 years ago
10.3390/molecules25010137
A Widely Metabolomic Analysis Revealed Metabolic Alterations of Epimedium Pubescens Leaves at Different Growth Stages
Cited by: 12
Author(s): Zhenxian Qin, Dengqun Liao, Yalan Chen, Chenyang Zhang, Ruipeng An, Qing Zeng, Xianen Li
Software Mentions: 1
Published: almost 5 years ago
10.7717/peerj.11496
Identification of potential gene signatures associated with osteosarcoma by integrated bioinformatics analysis
Cited by: 13
Author(s): Yutao Jia, Yang Liu, Zhihua Han, Rong Tian
Software Mentions: 1
Published: over 3 years ago
10.1186/s12935-019-0867-1
Systematically profiling the expression of eIF3 subunits in glioma reveals the expression of eIF3i has prognostic value in IDH-mutant lower grade glioma
Cited by: 19
Author(s): Rui‐Chao Chai, Ning Wang, Yuzhou Chang, Ke‐Nan Zhang, Jingjun Li, Junjie Niu, Fan Wu, Yuqing Liu, Yongzhi Wang
Software Mentions: 1
Published: over 5 years ago
10.7717/peerj.4514
Assessing soil bacterial community and dynamics by integrated high-throughput absolute abundance quantification
Cited by: 57
Author(s): Jun Lou, Li Yang, Haizhen Wang, Laosheng Wu, Jianming Xu
Software Mentions: 1
Published: over 6 years ago
10.1186/s12935-018-0724-7
Identification of a 6-gene signature predicting prognosis for colorectal cancer
Cited by: 61
Author(s): Shuguang Zuo, Gongpeng Dai, Xuequn Ren
Software Mentions: 1
Published: almost 6 years ago
10.1007/s00262-020-02825-z
PD-L1 amplification is associated with an immune cell rich phenotype in squamous cell cancer of the lung
Cited by: 14
Author(s): Torsten Goldmann, Sebastian Marwitz, Dörte Nitschkowski, Rosemarie Krupar, Max Backman, Hedvig Elfving, Viktoria Thurfjell, Amanda Lindberg, Hans Brunnström, Linnéa La Fleur, Artur Mezheyeuski, Johanna Sofia Margareta Mattsson, Johan Botling, Patrick Micke, Carina Strell
Software Mentions: 1
Published: almost 4 years ago
10.1002/cam4.1379
Chemotherapy and terminal skeletal muscle differentiation in <i>WT1-</i> mutant Wilms tumors
Cited by: 10
Author(s): Brigitte Royer‐Pokora, Manfred Beier, Artur Brandt, Constanze Duhme, Maike Busch, Carmen de Torres, Hans-Dieter Royer, Jaume Mora
Software Mentions: 1
Published: over 6 years ago
10.3389/fgene.2020.577897
Alternative Splicing Diversified the Heat Response and Evolutionary Strategy of Conserved Heat Shock Protein 90s in Hexaploid Wheat (Triticum aestivum L.)
Cited by: 9
Author(s): Yunze Lu, Peng Zhao, Aihua Zhang, Lingjian Ma, Shengbao Xu, Xiaoming Wang
Software Mentions: 1
Published: almost 4 years ago
10.1186/1471-2164-15-347
DNA-encoded nucleosome occupancy is associated with transcription levels in the human malaria parasite Plasmodium falciparum
Cited by: 52
Author(s): Evelien M. Bunnik, Anton Polishko, Jacques Prudhomme, Nadia Ponts, Sarjeet S. Gill, Stefano Lonardi, Karine G. Le Roch
Software Mentions: 1
Published: over 10 years ago
10.18632/aging.102721
Targeting of miR-96-5p by catalpol ameliorates oxidative stress and hepatic steatosis in LDLr-/- mice via p66shc/cytochrome C cascade
Cited by: 26
Author(s): Yukun Zhang, Changyuan Wang, Jiawei Lu, Yue Jin, Canyao Xu, Qiang Meng, Qi Liu, Deshi Dong, Xiaodong Ma, Kexin Liu, Huijun Sun
Software Mentions: 1
Published: almost 5 years ago
10.1002/mgg3.1404
Development of an immune‐related prognostic model for pediatric acute lymphoblastic leukemia patients
Cited by: 3
Author(s): Xi Quan, Nan Zhang, Ying Chen, Hanqing Zeng, Junming Deng
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pgen.1004860
Enhanced Longevity by Ibuprofen, Conserved in Multiple Species, Occurs in Yeast through Inhibition of Tryptophan Import
Cited by: 77
Author(s): Chi He, Scott Tsuchiyama, Quynh T. Nguyen, Ekaterina Plyusnina, Samuel R. Terrill, Sarah Sahibzada, Bhumil Patel, Alena R. Faulkner, Mikhail Shaposhnikov, Ruilin Tian, Mitsuhiro Tsuchiya, Matt Kaeberlein, Alexey Moskalev, Brian K. Kennedy, Michael Polymenis
Software Mentions: 1
Published: almost 10 years ago
10.1186/s12864-019-5698-x
Genome-wide identification, characterization and expression analysis of the non-specific lipid transfer proteins in potato
Cited by: 21
Author(s): Guojun Li, Menglu Hou, Yaxue Liu, Yanxi Pei, Minghui Ye, Yao Zhou, Chenxi Huang, Yaqi Zhao, Hongwei Ma
Software Mentions: 1
Published: over 5 years ago
10.1186/s12864-018-4985-2
Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses
Cited by: 45
Author(s): Muhammad Shaban, Muhammad Mahmood Ahmed, Heng Sun, Abid Ullah, Longfu Zhu
Software Mentions: 1
Published: over 6 years ago
10.1002/cam4.3246
Large granular lymphocyte leukemia serum and corresponding hematological parameters reveal unique cytokine and sphingolipid biomarkers and associations with STAT3 mutations
Cited by: 9
Author(s): Kristine C. Olson, Katharine B. Moosic, Marieke K. Jones, Paige M.K. Larkin, Thomas L. Olson, Mariella Toro, Todd E. Fox, David J. Feith
Software Mentions: 1
Published: over 4 years ago
10.3390/foods10010124
Quantitative and Comparative Investigation of Plasmalogen Species in Daily Foodstuffs
Cited by: 14
Author(s): Yue Wu, Zhen Chen, Jiaping Jia, Hitoshi Chiba, Shu‐Ping Hui
Software Mentions: 1
Published: almost 4 years ago
10.1186/s40246-018-0186-y
Germline TP53 and MSH6 mutations implicated in sporadic triple-negative breast cancer (TNBC): a preliminary study
Cited by: 8
Author(s): Dandan Yi, Lei Xu, Jiaqi Luo, Xiaobin You, Tao Huang, Yi Zi, Xiaoting Li, Ru Wang, Zaixuan Zhong, Xiaoqiao Tang, Ang Li, Yujian Shi, Jianmei Rao, Yifen Zhang, Jianfeng Sang
Software Mentions: 1
Published: almost 6 years ago
10.1002/2211-5463.12563
New biomarkers of Kawasaki disease identified by urine proteomic analysis
Cited by: 7
Author(s): Huimin Hu, Hongwu Du, Jiawen Cui, Deqin Feng, Zhenhong Du
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0182426
Disruption in the cecal microbiota of chickens challenged with Clostridium perfringens and other factors was alleviated by Bacillus licheniformis supplementation
Cited by: 59
Author(s): Lin Yang, Shengyu Xu, Dong Zeng, Xueqin Ni, Mingmei Zhou, Yan Zeng, Hesong Wang, Yi Zhou, Hongxiang Zhu, Kangcheng Pan, Guangyao Li
Software Mentions: 1
Published: over 7 years ago
10.3389/fendo.2021.719843
3D Atlas of the Pituitary Gland of the Model Fish Medaka (Oryzias latipes)
Cited by: 12
Author(s): Muhammad Rahmad Royan, Khadeeja Siddique, Gergely Csúcs, Maja Puchades, Rasoul Nourizadeh-Lillabadi, Jan G. Bjaalie, Christiaan V. Henkel, Finn‐Arne Weltzien, Romain Fontaine
Software Mentions: 1
Published: about 3 years ago
10.18632/oncotarget.22318
Identification of a three miRNA signature as a novel potential prognostic biomarker in patients with bladder cancer
Cited by: 13
Author(s): Fei Peng, Hui Li, Hailang Xiao, Ling Li, Yan Li, Yi Wu
Software Mentions: 1
Published: about 7 years ago
10.1002/cam4.1532
Downregulation of <scp>NDR</scp>1 contributes to metastasis of prostate cancer cells via activating epithelial‐mesenchymal transition
Cited by: 7
Author(s): Juntao Yue, Huimin Sun, Shijie Liu, Fei Yu, Shanshan Wang, Fuli Wang, Ruixiong Shen, Feng Zhu, Lei Zhang, Chen Shao
Software Mentions: 1
Published: over 6 years ago
10.3389/fendo.2020.00628
Correlation Between Fecal Metabolomics and Gut Microbiota in Obesity and Polycystic Ovary Syndrome
Cited by: 49
Author(s): Ling Zhou, Zhexin Ni, Jin Yu, Wen Cheng, Zhen Cai, Chaoqin Yu
Software Mentions: 1
Published: about 4 years ago
10.1038/s41396-020-0590-x
Anaerobic methane oxidation coupled to manganese reduction by members of the Methanoperedenaceae
Cited by: 186
Author(s): Andy O. Leu, Chen Cai, Simon Jon McIlroy, Gordon Southam, Victoria J. Orphan, Zhiguo Yuan, Shihu Hu, Gene W. Tyson
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pbio.2006571
Organic cation transporter 3 (Oct3) is a distinct catecholamines clearance route in adipocytes mediating the beiging of white adipose tissue
Cited by: 37
Author(s): Wenxin Song, Qi Luo, Yuping Zhang, Linkang Zhou, Ye Liu, Zhilong Ma, Jianming Guo, Yuedong Huang, Lili Cheng, Ziyi Meng, Zicheng Li, Bin Zhang, Siqi Li, Sook Wah Yee, Hao Fan, Peng Li, Kathleen M. Giacomini, Ligong Chen
Software Mentions: 1
Published: almost 6 years ago
10.3390/ijms21239059
Exercise and the Cisd2 Prolongevity Gene: Two Promising Strategies to Delay the Aging of Skeletal Muscle
Cited by: 10
Author(s): Yuan Teng, Jing Ya Wang, Y. H. Hui, Ting Fen Tsai
Software Mentions: 1
Published: almost 4 years ago
10.3389/fcimb.2018.00005
Identification and Characterization of Blood and Neutrophil-Associated Microbiomes in Patients with Severe Acute Pancreatitis Using Next-Generation Sequencing
Cited by: 59
Author(s): Qiurong Li, Chenyang Wang, Chunbo Tang, Xiuhe Zhao, Qi He, Jieshou Li
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12864-020-6479-2
Genome-wide analysis of the NAC transcription factor family in broomcorn millet (Panicum miliaceum L.) and expression analysis under drought stress
Cited by: 27
Author(s): Zhongying Shan, Yanmiao Jiang, Haiquan Li, Jian-Wei Guo, Ming Dong, Jianan Zhang, Guoqing Liu
Software Mentions: 1
Published: almost 5 years ago
10.1186/s13046-018-0923-z
Elevated Na/H exchanger 1 (SLC9A1) emerges as a marker for tumorigenesis and prognosis in gliomas
Cited by: 42
Author(s): Xiudong Guan, Lanxin Luo, Gulnaz Begum, Gary Kohanbash, Qingkun Song, Aparna Rao, Nduka Amankulor, Baoshan Sun, Dandan Sun, Wang Jia
Software Mentions: 1
Published: about 6 years ago
10.1186/s13046-019-1023-4
RETRACTED ARTICLE: MicroRNA-506 inhibits tumor growth and metastasis in nasopharyngeal carcinoma through the inactivation of the Wnt/β-catenin signaling pathway by down-regulating LHX2
Cited by: 69
Author(s): Tian Liang, Yanjun Zheng, Juan Wang, Jingyi Zhao, Daoke Yang, Zhangsuo Liu
Software Mentions: 1
Published: over 5 years ago
10.1038/s12276-021-00661-4
Pituitary P62 deficiency leads to female infertility by impairing luteinizing hormone production
Cited by: 9
Author(s): Xing Li, Ling Zhou, Guiliang Peng, Mingyu Liao, Linlin Zhang, Hua Hu, Линг Лонг, Xuefeng Tang, Hua Qu, Jianghua Shao, Cong-Yi Wang, Min Long
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2017.01936
Role of Gut Microbiota on Cardio-Metabolic Parameters and Immunity in Coronary Artery Disease Patients with and without Type-2 Diabetes Mellitus
Cited by: 73
Author(s): Lidia Sánchez-Alcoholado, Daniel Castellano‐Castillo, Laura Jordán-Martínez, Isabel Moreno-Indias, Pilar Cardila-Cruz, Daniel Elena, Antonio J. Muñoz-García, María Isabel Queipo‐Ortuño, Manuel Jiménez‐Navarro
Software Mentions: 1
Published: about 7 years ago
10.1186/s13046-019-1488-1
Human bone marrow mesenchymal stem cells-derived microRNA-205-containing exosomes impede the progression of prostate cancer through suppression of RHPN2
Cited by: 58
Author(s): Shuangjian Jiang, Chengqiang Mo, Shengjie Guo, Sian Liu, Bin Huang, Xiaopeng Mao
Software Mentions: 1
Published: almost 5 years ago
10.3389/fmicb.2020.581610
Comparison of Bacterial Microbiota in Raw Mare’s Milk and Koumiss Using PacBio Single Molecule Real-Time Sequencing Technology
Cited by: 8
Author(s): Meng Zhang, Na Le Dang, Dongyan Ren, Feiyan Zhao, Ruirui Lv, Teng Ma, Qiuhua Bao, Bilige Menghe, Wenjun Liu
Software Mentions: 1
Published: about 4 years ago
10.7717/peerj.7544
Crucial lncRNAs associated with adipocyte differentiation from human adipose-derived stem cells based on co-expression and ceRNA network analyses
Cited by: 15
Author(s): Kana Chen, Shujie Xie, Wujun Jin
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0223417
Effect of host genotype and Eimeria acervulina infection on the metabolome of meat-type chickens
Cited by: 10
Author(s): Samuel E. Aggrey, Marie C. Milfort, Alberta L. Fuller, Jianmin Yuan, Romdhane Rekaya
Software Mentions: 1
Published: about 5 years ago
10.3389/fmicb.2021.726074
Characterization and Genomic Analysis of Marinobacter Phage vB_MalS-PS3, Representing a New Lambda-Like Temperate Siphoviral Genus Infecting Algae-Associated Bacteria
Cited by: 6
Author(s): Huan Liu, Kaiyang Zheng, Baohong Liu, Yantao Liang, Siyuan You, Wenjing Zhang, Xinran Zhang, Yaqi Jie, Hongbing Shao, Yong Jiang, Cui Guo, Hui He, Hualong Wang, Yeong Yik Sung, Wen Jye Mok, Li Lian Wong, Andrew McMinn, Min Wang
Software Mentions: 1
Published: about 3 years ago
10.3390/life11060544
Extensive Metabolite Profiling in the Unexploited Organs of Black Tiger for Their Potential Valorization in the Pharmaceutical Industry
Cited by: 2
Author(s): Jianfei Gao, Kangning Xiong, Wei Zhou, Weijie Li
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0235268
Dynamic longitudinal behavior in animals exposed to chronic social defeat stress
Cited by: 10
Author(s): Marlon Wendelmuth, M. Willam, Hristo Todorov, Konstantin Radyushkin, Susanne Gerber, Susann Schweiger
Software Mentions: 1
Published: over 4 years ago
10.7150/jca.41733
Untargeted Metabolomics Analysis of Esophageal Squamous Cell Carcinoma Discovers Dysregulated Metabolic Pathways and Potential Diagnostic Biomarkers
Cited by: 23
Author(s): Zhaowei Zhu, Qi Zheng, Ji Zhang, Wenhua Xue, Lifeng Li, Zhibo Shen, Zeyun Li, Yanggang Yuan, Wenbin Wang, Jie Zhao
Software Mentions: 1
Published: almost 5 years ago
10.1534/g3.115.020974
Global Analysis of Predicted G Protein−Coupled Receptor Genes in the Filamentous Fungus, <i>Neurospora crassa</i>
Cited by: 31
Author(s): Ilva E. Cabrera, Itallia V. Pacentine, Andrew C. Lim, Nayeli Guerrero, Svetlana Kryštofová, Liande Li, Alexander V. Michkov, Jacqueline A. Servin, Steven Ahrendt, Alexander J. Carrillo, Liza M. Davidson, Andrew H. Barsoum, Jackie Cao, Ronald Castillo, Wan-Ching Chen, Alex Dinkchian, Stephanie Kim, Sho M. Kitada, Taffani H. Lai, Ashley Mach, Cristin Malekyan, Toua R. Moua, Carlos Rojas Torres, Alaina Yamamoto, Katherine A. Borkovich
Software Mentions: 1
Published: almost 9 years ago
10.3389/fmicb.2020.617030
Integrative Metagenomics–Metabolomics for Analyzing the Relationship Between Microorganisms and Non-volatile Profiles of Traditional Xiaoqu
Cited by: 20
Author(s): Chi Zhao, Wei Su, Yu Mu, Yingchun Mu, Li Jiang
Software Mentions: 1
Published: almost 4 years ago
10.18632/oncotarget.26983
The heterogeneity and complexity of <i>Cannabis</i> extracts as antitumor agents
Cited by: 64
Author(s): Liran Baram, Ella Peled, Paula Berman, Ben Yellin, Elazar Besser, Maya Benami, Igal Louria-Hayon, Gil M. Lewitus, David Meiri
Software Mentions: 1
Published: over 5 years ago
10.7150/jca.50407
Systematic analysis of the function and prognostic value of RNA binding proteins in Colon Adenocarcinoma
Cited by: 1
Author(s): Xuewei Qi, Zeyu Liu, Chenglong Zhang, Ming Yang, Yuxiang Wan, Jinchang Huang, Lin Xu
Software Mentions: 1
Published: almost 4 years ago
10.1007/s10142-019-00672-5
Gene expression profiles between cystic and solid vestibular schwannoma indicate susceptible molecules and pathways in the cystic formation of vestibular schwannoma
Cited by: 6
Author(s): Shuang Yan, Quan Wang, Zirong Huo, Tao Yang, Xianghua Yin, Zhaoyan Wang, Zhihua Zhang, Hao Wu
Software Mentions: 1
Published: over 5 years ago
10.3389/fpls.2020.00630
Genome Assembly and Annotation of Soft-Shelled Adlay (Coix lacryma-jobi Variety ma-yuen), a Cereal and Medicinal Crop in the Poaceae Family
Cited by: 17
Author(s): Sang-Ho Kang, Byeollee Kim, Beom-Soon Choi, Hyun Oh Lee, Nam Hoon Kim, Seung-Jae Lee, Hye Sik Kim, Myung Ju Shin, Hyo-Won Kim, Kyunghyun Nam, Kyoung Dae Kang, Soo-Jin Kwon, Tae‐Jin Oh, Sang-Choon Lee, Chang-Kug Kim
Software Mentions: 1
Published: over 4 years ago
10.1186/s12870-019-1876-x
FtMYB8 from Tartary buckwheat inhibits both anthocyanin/Proanthocyanidin accumulation and marginal Trichome initiation
Cited by: 16
Author(s): Yu‐Wen Huang, Qi Wu, Shuang Wang, Jiaqi Shi, Qixin Dong, Panfeng Yao, Guannan Shi, Shuangxiu Xu, Renyu Deng, Chenglei Li, Hui Chen, Huihui Zhao
Software Mentions: 1
Published: over 5 years ago
10.1186/s12864-021-07501-9
Transcriptomes analysis reveals novel insight into the molecular mechanisms of somatic embryogenesis in Hevea brasiliensis
Cited by: 15
Author(s): Ying Wang, Hui‐Liang Li, Yong-Kai Zhou, Dong Guo, Jiahong Zhu, Shi-Qing Peng
Software Mentions: 1
Published: over 3 years ago
10.3390/jpm11050363
Integrative Systems Biology Approaches to Identify Potential Biomarkers and Pathways of Cervical Cancer
Cited by: 9
Author(s): Arafat Rahman Oany, Md. Younus Mia, Tahmina Pervin, Salem A. Alyami, Mohammad Ali Moni
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0188838
Virulence genes and subclone status as markers of experimental virulence in a murine sepsis model among Escherichia coli sequence type 131 clinical isolates from Spain
Cited by: 7
Author(s): Irene Merino, Stephen Porter, Brian Johnston, Connie Clabots, Evelyn Shaw, Juan Pablo Horcajada, Rafael Cantón, Patrícia Ruíz-Garbajosa, James R. Johnson
Software Mentions: 1
Published: almost 7 years ago
10.3390/ijms221910367
Genome-Wide Identification, Evolution, and Comparative Analysis of B-Box Genes in Brassica rapa, B. oleracea, and B. napus and Their Expression Profiling in B. rapa in Response to Multiple Hormones and Abiotic Stresses
Cited by: 8
Author(s): Sonam Singh, Sushil Satish Chhapekar, Yinbo Ma, Jana Jeevan Rameneni, Sang Heon Oh, Jusang Kim, Yong Pyo Lim, Su Ryun Choi
Software Mentions: 1
Published: about 3 years ago
10.1155/2019/7350414
Genome-Wide Identification, Characterization, and Expression Analysis of the Grapevine Superoxide Dismutase (SOD) Family
Cited by: 25
Author(s): Xin Hu, Chenyu Hao, Zong‐Ming Cheng, Yan Zhong
Software Mentions: 1
Published: over 5 years ago
10.1111/jcmm.14395
Identification and development of long non‐coding RNA‐associated regulatory network in colorectal cancer
Cited by: 18
Author(s): Hongda Pan, Jianji Pan, Shibo Song, Lei Ji, Hong Liu, Zhangru Yang
Software Mentions: 1
Published: over 5 years ago
10.3389/fcell.2019.00271
The Long Non-coding RNA ZFAS1 Sponges miR-193a-3p to Modulate Hepatoblastoma Growth by Targeting RALY via HGF/c-Met Pathway
Cited by: 20
Author(s): Xichun Cui, Zhifang Wang, Liwen Liu, Xin Liu, Dandan Zhang, Jianhao Li, Jianming Zhu, Juntao Pan, Da Zhang, Guangying Cui
Software Mentions: 1
Published: about 5 years ago
10.3389/fcimb.2015.00055
Exploring salivary microbiota in AIDS patients with different periodontal statuses using 454 GS-FLX Titanium pyrosequencing
Cited by: 19
Author(s): Fang Zhang, Shenghua He, Jie-Qi Jin, Guangyan Dong, Hong-Kun Wu
Software Mentions: 1
Published: over 9 years ago
10.3389/fmicb.2017.01051
RNA Profiling Analysis of the Serum Exosomes Derived from Patients with Active and Latent Mycobacterium tuberculosis Infection
Cited by: 27
Author(s): Lingna Lv, Cuidan Li, Xiuli Zhang, Nan Ding, Tian-Shu Cao, Xiaoyun Jia, Jinghui Wang, Liping Pan, Hongyan Jia, Zihui Li, Ju Zhang, Fei Chen, Zongde Zhang
Software Mentions: 1
Published: over 7 years ago
10.18632/oncotarget.27508
Roscovitine enhances all-<i>trans</i> retinoic acid (ATRA)-induced nuclear enrichment of an ensemble of activated signaling molecules and augments ATRA-induced myeloid cell differentiation
Cited by: 9
Author(s): Asif Rashid, Xin Duan, Feng Gao, Moon-Sik Yang, Andrew Yen
Software Mentions: 1
Published: over 4 years ago
10.1186/s12870-019-1809-8
Iso-Seq analysis of the Taxus cuspidata transcriptome reveals the complexity of Taxol biosynthesis
Cited by: 44
Author(s): Xue-Jun Kuang, Sijie Sun, Jianhe Wei, Ying Li, Chao Sun
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms21239015
Unique Role of Caffeine Compared to Other Methylxanthines (Theobromine, Theophylline, Pentoxifylline, Propentofylline) in Regulation of AD Relevant Genes in Neuroblastoma SH-SY5Y Wild Type Cells
Cited by: 13
Author(s): Daniel Janitschke, Anna Andrea Lauer, C Bachmann, Martin S. Seyfried, Heike S. Grimm, Tobias Hartmann, Marcus O. W. Grimm
Software Mentions: 1
Published: almost 4 years ago
10.3389/fpls.2016.01212
Fluorescent Pseudomonas Strains with only Few Plant-Beneficial Properties Are Favored in the Maize Rhizosphere
Cited by: 38
Author(s): Jordan Vacheron, Yvan Moënne‐Loccoz, Audrey Dubost, Maximilien Gonçalves-Martins, Daniel Müller, Claire Prigent‐Combaret
Software Mentions: 1
Published: about 8 years ago
10.3389/fpls.2020.00333
Does Molecular and Structural Evolution Shape the Speedy Grass Stomata?
Cited by: 11
Author(s): Yuanyuan Wang, Zhong‐Hua Chen
Software Mentions: 1
Published: over 4 years ago
10.1111/jcmm.15835
Identification and validation of critical alternative splicing events and splicing factors in gastric cancer progression
Cited by: 6
Author(s): Haoran Feng, Zhijian Jin, Kun Liu, Yi Peng, Songyao Jiang, Changgang Wang, Jiele Hu, Xiaofeng Shen, Weihua Qiu, Xi Cheng, Ren Zhao
Software Mentions: 1
Published: about 4 years ago
10.1111/jcmm.16092
Characterizing heterogeneity of non‐small cell lung tumour microenvironment to identify signature prognostic genes
Cited by: 9
Author(s): Kai Mi, Fuhui Chen, Zhipeng Qian, Jing Chen, Dongxu Lv, Chunlong Zhang, Yanjun Xu, Hongguang Wang, Yuepeng Zhang, Yanan Jiang, Desi Shang
Software Mentions: 1
Published: about 4 years ago
10.3389/fcimb.2020.576185
The in vitro Effects of the Probiotic Strain, Lactobacillus casei ZX633 on Gut Microbiota Composition in Infants With Diarrhea
Cited by: 8
Author(s): Xing Wang, Miao Zhang, Weidong Wang, Haoxin Lv, Hua Zhong, Yuan Liu, Zhongfang Tan
Software Mentions: 1
Published: about 4 years ago
10.15252/embr.201949087
Npl3 stabilizes R‐loops at telomeres to prevent accelerated replicative senescence
Cited by: 12
Author(s): Lara Pérez-Martínez, Merve Öztürk, Falk Butter, Brian Luke
Software Mentions: 1
Published: almost 5 years ago
10.3389/fpls.2018.00503
Genome-Wide Association Studies of 11 Agronomic Traits in Cassava (Manihot esculenta Crantz)
Cited by: 38
Author(s): Shengkui Zhang, Xin Chen, Cheng Lü, Jianqiu Ye, Meiling Zou, Kundian Lu, Subin Feng, Jinli Pei, Chen Liu, Xiaojin Zhou, Ping-An Ma, Zhaogui Li, Cuijuan Liu, Qi Liao, Zhiqiang Xia, Wenquan Wang
Software Mentions: 1
Published: over 6 years ago
10.1186/s12872-020-01527-9
Identification of transcription factors MYC and C/EBPβ mediated regulatory networks in heart failure based on gene expression omnibus datasets
Cited by: 2
Author(s): Haiwei Wang, Xinrui Wang, Liangpu Xu, Hua Cao
Software Mentions: 1
Published: over 4 years ago
10.1186/s12870-020-02725-5
Genome-wide survey of soybean papain-like cysteine proteases and their expression analysis in root nodule symbiosis
Cited by: 9
Author(s): Songli Yuan, Danxia Ke, Rong Li, Xiangyong Li, Lei Wang, Haifeng Chen, Chanjuan Zhang, Yi Huang, Limiao Chen, Qingnan Hao, Hongli Yang, Dong Cao, Shuilian Chen, Wei Guo, Shan Zhang, Zengling Yang, Xiaojuan Zhang, Dandan Qiu, Yuefeng Guan, Xinan Zhou
Software Mentions: 1
Published: about 4 years ago
10.1186/s12870-020-2241-9
Transcriptome analysis reveals key genes involved in the regulation of nicotine biosynthesis at early time points after topping in tobacco (Nicotiana tabacum L.)
Cited by: 21
Author(s): Yan Qin, Shenglong Bai, Wenzheng Li, Taixiang Sun, David W. Galbraith, Zefeng Yang, Yun Zhou, Guiling Sun, Bing‐Wu Wang
Software Mentions: 1
Published: almost 5 years ago
10.1111/jcmm.16190
Genome‐wide data mining to construct a competing endogenous RNA network and reveal the pivotal therapeutic targets of Parkinson's disease
Cited by: 4
Author(s): Jing Zhang, Ruiying Chen, Fan Shi, Pan Chyr Yang, Kun Sun, Xiaojing Yang, Yulan Jin
Software Mentions: 1
Published: almost 4 years ago
10.3389/fpls.2021.722810
Transcriptomic Profiling Reveals Shared Signalling Networks Between Flower Development and Herbivory-Induced Responses in Tomato
Cited by: 3
Author(s): Lanlan Ke, Yangzi Wang, M. Schäfer, Thomas Städler, Rensen Zeng, Jörg Fabian, Hannier Pulido, Consuelo Μ. De Moraes, Yuanyuan Song, Shuqing Xu
Software Mentions: 1
Published: about 3 years ago
10.3389/fpls.2017.01739
Arbuscular Mycorrhizal Symbiosis Alleviates Salt Stress in Black Locust through Improved Photosynthesis, Water Status, and K+/Na+ Homeostasis
Cited by: 126
Author(s): Jie Chen, Haoqiang Zhang, Xinlu Zhang, Ming Tang
Software Mentions: 1
Published: about 7 years ago
10.3389/fmicb.2019.00528
Genomic and Physiological Traits of the Marine Bacterium Alcaligenes aquatilis QD168 Isolated From Quintero Bay, Central Chile, Reveal a Robust Adaptive Response to Environmental Stressors
Cited by: 23
Author(s): Roberto E. Durán, Valentina Méndez, Laura Rodríguez-Castro, Bárbara Barra-Sanhueza, Francisco Salvà‐Serra, Edward R. B. Moore, Eduardo Castro-Nallar, Michael Seeger
Software Mentions: 1
Published: over 5 years ago
10.1186/s12885-019-5802-2
Analysis of the transcriptomic features of microsatellite instability subtype colon cancer
Cited by: 9
Author(s): Haiwei Wang, Xinrui Wang, Liangpu Xu, Ji Zhang, Hua Cao
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms21186782
Gut Microbiota-Mediated Inflammation and Gut Permeability in Patients with Obesity and Colorectal Cancer
Cited by: 55
Author(s): Lidia Sánchez-Alcoholado, Rafael Ordóñez, A. Otero, Isaac Plaza-Andrade, Aurora Laborda-Illanes, J. A. Medina, Bruno Ramos‐Molina, Jaime Gómez-Millán, María Isabel Queipo-Ortuño
Software Mentions: 1
Published: about 4 years ago
10.1186/s12870-018-1440-0
Metabolite profiling and transcriptomic analyses reveal an essential role of UVR8-mediated signal transduction pathway in regulating flavonoid biosynthesis in tea plants (Camellia sinensis) in response to shading
Cited by: 74
Author(s): Linlin Liu, Yingying Li, Guangbiao She, Xianchen Zhang, Bill Jordan, Qi Chen, Jian Zhao, Xiaochun Wan
Software Mentions: 1
Published: about 6 years ago
10.3389/fpls.2016.01800
Genome-Wide Analysis of Soybean JmjC Domain-Containing Proteins Suggests Evolutionary Conservation Following Whole-Genome Duplication
Cited by: 32
Author(s): Yapeng Han, Xiangyong Li, Lin Cheng, Yanchun Liang, Hui Wang, Danxia Ke, Hongyu Yuan, Liangsheng Zhang, Lei Wang
Software Mentions: 1
Published: almost 8 years ago
10.3390/ijms17111814
Assessing Heterogeneity of Osteolytic Lesions in Multiple Myeloma by 1H HR-MAS NMR Metabolomics
Cited by: 5
Author(s): Laurette Tavel, Francesca Fontana, Josè Manuel Garcia Manteiga, Silvia Mari, E. Mariani, Enrico Caneva, Roberto Sitia, F. Camnasio, Magda Marcatti, Simone Cenci, Giovanna Musco
Software Mentions: 1
Published: about 8 years ago
10.3389/fpls.2020.581693
Effective Defense of Aleppo Pine Against the Giant Scale Marchalina hellenica Through Ecophysiological and Metabolic Changes
Cited by: 5
Author(s): Mariangela N. Fotelli, Fani G. Lyrou, Dimitrios Ν. Avtzis, Daniel Maurer, Heinz Rennenberg, Gavriil Spyroglou, Andrea Polle, K. Radoglou
Software Mentions: 1
Published: almost 4 years ago
10.3390/jcm10050998
High Comorbidity Burden in Patients with SLE: Data from the Community-Based Lupus Registry of Crete
Cited by: 21
Author(s): Irini Gergianaki, Panagiotis Garantziotis, Christina Adamichou, Ioannis Saridakis, G Spyrou, Prodromos Sidiropoulos, George Βertsias
Software Mentions: 1
Published: over 3 years ago
10.3390/plants8120615
Soil Mesofauna Respond to the Upward Expansion of Deyeuxia purpurea in the Alpine Tundra of the Changbai Mountains, China
Cited by: 2
Author(s): Tao Yan, Zhongqiang Wang, Chen Ma, Hongshi He, Jiawei Xu, Yinghua Jin, Haixia Wang, Xiaona Zheng
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12903-020-1013-0
Differential expression of matrix metalloproteinases and miRNAs in the metastasis of oral squamous cell carcinoma
Cited by: 24
Author(s): Zhenhu Ren, Kun Wu, Rong Yang, Zheqi Liu, Wei Cao
Software Mentions: 1
Published: almost 5 years ago
10.18632/aging.104099
Comprehensive circular RNA expression profiling constructs a ceRNA network and identifies hsa_circ_0000673 as a novel oncogene in distal cholangiocarcinoma
Cited by: 5
Author(s): Xin Zhao, Xinxue Zhang, Zhigang Zhang, Zhe Liu, Jiang Zhu, Shaocheng Lyu, Lixin Li, Ren Lang, Qiang He
Software Mentions: 1
Published: about 4 years ago
10.3390/plants9070855
Identification of the Volatile Compounds and Observation of the Glandular Trichomes in Opisthopappus taihangensis and Four Species of Chrysanthemum
Cited by: 11
Author(s): Yanhong Guo, Tengxun Zhang, Jian Zhong, Tingting Ba, Ting Xu, Qixiang Zhang, Ming Sun
Software Mentions: 1
Published: over 4 years ago
10.1093/jxb/ery335
<i>bHLH92</i>from sheepgrass acts as a negative regulator of anthocyanin/proanthocyandin accumulation and influences seed dormancy
Cited by: 39
Author(s): Pincang Zhao, Xiaoxia Li, Junjie Jia, Ye Yuan, Shuangyan Chen, Dongmei Qi, Long Cheng, Gongshe Liu
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0229754
Methylation of SRD5A2 promoter predicts a better outcome for castration-resistant prostate cancer patients undergoing androgen deprivation therapy
Cited by: 5
Author(s): Zongwei Wang, Tuo Deng, Xingbo Long, Xueming Lin, Shulin Wu, Hongbo Wang, Rongbin Ge, Zhenwei Zhang, Chin‐Lee Wu, Mary‐Ellen Taplin, Aria F. Olumi
Software Mentions: 1
Published: over 4 years ago
10.1155/2021/5568411
Integrated Analysis of the Roles of RNA Binding Proteins and Their Prognostic Value in Clear Cell Renal Cell Carcinoma
Cited by: 5
Author(s): Bowen Wang, Haoran Zhao, Shaobin Ni, Beichen Ding
Software Mentions: 1
Published: over 3 years ago
10.1093/jxb/eraa347
Developmentally controlled changes during Arabidopsis leaf development indicate causes for loss of stress tolerance with age
Cited by: 13
Author(s): Aakansha Kanojia, Saurabh Gupta, Maria Benina, Alisdair R. Fernie, Bernd Mueller‐Roeber, Tsanko Gechev, Paul P. Dijkwel
Software Mentions: 1
Published: about 4 years ago
10.1093/jxb/erab029
Lycopene β-cyclase expression influences plant physiology, development, and metabolism in tobacco plants
Cited by: 19
Author(s): Stella Kössler, Tegan Armarego-Marriott, Danuše Tarkowská, Veronika Turečková, Shreya Agrawal, Jianing Mi, Leonardo Perez de Souza, Mark Aurel Schöttler, Anne Schadach, Andreas Fröhlich, Ralph Bock, Salim Al‐Babili, Stephanie Ruf, Arun Sampathkumar, Juan C. Moreno
Software Mentions: 1
Published: almost 4 years ago
10.15252/embr.202051981
<i>N</i> ‐acetylaspartate release by glutaminolytic ovarian cancer cells sustains protumoral macrophages
Cited by: 19
Author(s): Alessio Menga, Maria Favia, Iolanda Spera, Maria Carmela Vegliante, Rosanna Gissi, Anna Grassi, Luna Laera, Alessandro Campanella, Andrea Gerbino, Giovanna Carrà, Marcella Canton, Vera Loizzi, Ciro Leonardo Pierri, Gennaro Cormio, Massimiliano Mazzone, Alessandra Castegna
Software Mentions: 1
Published: over 3 years ago
10.3390/ijms22179527
Nitrate Regulates Maize Root Transcriptome through Nitric Oxide Dependent and Independent Mechanisms
Cited by: 1
Author(s): Laura Ravazzolo, Sara Trevisan, Silvia Iori, Cristian Forestan, Mario Malagoli, Silvia Quaggiotti
Software Mentions: 1
Published: about 3 years ago
10.1155/2020/8919534
Identification of miRNA-mRNA Crosstalk in Respiratory Syncytial Virus- (RSV-) Associated Pediatric Pneumonia through Integrated miRNAome and Transcriptome Analysis
Cited by: 10
Author(s): Xu Zhang, Feng Huang, Diyuan Yang, Tao Peng, Gen Liu
Software Mentions: 1
Published: over 4 years ago
10.18632/oncotarget.27943
The acylfulvene alkylating agent, LP-184, retains nanomolar potency in non-small cell lung cancer carrying otherwise therapy-refractory mutations
Cited by: 2
Author(s): Aditya Kulkarni, Joseph McDermott, Umesh Kathad, Rama Modali, Jaepyeong Cha, Panna Sharma, Kishor Bhatia
Software Mentions: 1
Published: over 3 years ago
10.3389/fpls.2021.705286
Transcript Profiling of MIKCc MADS-Box Genes Reveals Conserved and Novel Roles in Barley Inflorescence Development
Cited by: 13
Author(s): Hendrik N. J. Kuijer, Neil J. Shirley, Shi F. Khor, Shi Jin, Julian G. Schwerdt, Dabing Zhang, Gang Li, Rachel A. Burton
Software Mentions: 1
Published: about 3 years ago