Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: pheatmap

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/pheatmap

Pretty Heatmaps
17 versions
Latest release: almost 6 years ago
77 dependent packages
37,681 downloads last month

Papers Mentioning pheatmap 2,572

10.3389/fmicb.2020.581610
Comparison of Bacterial Microbiota in Raw Mare’s Milk and Koumiss Using PacBio Single Molecule Real-Time Sequencing Technology
Cited by: 8
Author(s): Meng Zhang, Na Le Dang, Dongyan Ren, Feiyan Zhao, Ruirui Lv, Teng Ma, Qiuhua Bao, Bilige Menghe, Wenjun Liu
Software Mentions: 1
Published: about 4 years ago
10.3389/fonc.2021.647236
Autophagy-Related Long Non-coding RNA Is a Prognostic Indicator for Bladder Cancer
Cited by: 30
Author(s): Jiaming Wan, Cheng Guo, Hongpeng Fang, Zhongye Xu, Yongwei Hu, Yun Luo
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-90887-z
Role of cytoplasmic localization of maspin in promoting cell invasion in breast cancer with aggressive phenotype
Cited by: 5
Author(s): Tomohiko Sakabe, Makoto Wakahara, Goshi Shiota, Yoshihisa Umekita
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-89294-1
A candidate gene identified in converting platycoside E to platycodin D from Platycodon grandiflorus by transcriptome and main metabolites analysis
Cited by: 12
Author(s): Xinglong Su, Yingying Liu, Lu Han, Zhaojian Wang, Mengyang Cao, Liping Wu, Weimin Jiang, Fancheng Meng, Xiaohu Guo, Nianjun Yu, Shuangying Gui, Shihai Xing, Daiyin Peng
Software Mentions: 1
Published: over 3 years ago
10.3389/fonc.2019.01578
Identification of a Two-Gene (PML-EPB41) Signature With Independent Prognostic Value in Osteosarcoma
Cited by: 7
Author(s): Shengye Liu, Jiamei Liu, Xuechen Yu, Tao Shen, Qin Fu
Software Mentions: 1
Published: almost 5 years ago
10.1155/2021/2649123
Identification of a Transcription Factor Signature That Can Predict Breast Cancer Survival
Cited by: 4
Author(s): Chi Fan, Jianshi Du, Liu Ning
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41419-021-03856-9
TRPM2 promotes pancreatic cancer by PKC/MAPK pathway
Cited by: 25
Author(s): Rui Lin, Xiao Bao, Hui Wang, Sibo Zhu, Zhongyan Liu, Quanning Chen, Kaixing Ai, Baomin Shi
Software Mentions: 1
Published: over 3 years ago
10.1016/j.dib.2020.105523
Data analysis of PD-1 antibody in the treatment of melanoma patients
Cited by: 2
Author(s): Ting Li, Chao Zhang, Gang Zhao, Xinwei Zhang, Mengze Hao, Shafat Hassan, Min Zhang, Hong Zheng, Da Yang, Liang Liu, Farideh Mehraein-Ghomi, Xu Bai, Kexin Chen, Wei Zhang, Jilong Yang
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-021-86511-9
Molecular mechanisms of esophageal epithelial regeneration following repair of surgical defects with acellular silk fibroin grafts
Cited by: 3
Author(s): Gökhan Gündoğdu, Mehmet Tosun, Duncan R. Morhardt, Ali Hashemi Gheinani, Khalid Algarrahi, Xuehui Yang, Kyle Costa, Cinthia Galvez Alegria, Rosalyn M. Adam, Wei Yang, Joshua R. Mauney
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2017.01936
Role of Gut Microbiota on Cardio-Metabolic Parameters and Immunity in Coronary Artery Disease Patients with and without Type-2 Diabetes Mellitus
Cited by: 73
Author(s): Lidia Sánchez-Alcoholado, Daniel Castellano‐Castillo, Laura Jordán-Martínez, Isabel Moreno-Indias, Pilar Cardila-Cruz, Daniel Elena, Antonio J. Muñoz-García, María Isabel Queipo‐Ortuño, Manuel Jiménez‐Navarro
Software Mentions: 1
Published: about 7 years ago
10.1016/j.dib.2020.105179
Proteome data to explore the axolotl limb regeneration capacity at neotenic and metamorphic stages
Cited by: 2
Author(s): Turan Demircan, Mustafa Sibai, Ebru Altuntaş
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-021-85433-w
Integrative analysis of the microbiome and metabolome in understanding the causes of sugarcane bitterness
Cited by: 16
Author(s): Weijuan Huang, Donglei Sun, Lijun Chen, Yuxing An
Software Mentions: 1
Published: over 3 years ago
10.1534/g3.120.401880
High-Throughput Identification of Nuclear Envelope Protein Interactions in<i>Schizosaccharomyces pombe</i>Using an Arrayed Membrane Yeast-Two Hybrid Library
Cited by: 7
Author(s): Joseph M. Varberg, Jennifer M. Gardner, Scott McCroskey, Snehabala Saravanan, W. David Bradford, Sue L. Jaspersen
Software Mentions: 1
Published: almost 4 years ago
10.1128/mBio.02767-19
CD71 <sup>+</sup> Erythroid Cells Exacerbate HIV-1 Susceptibility, Mediate <i>trans</i> -Infection, and Harbor Infective Viral Particles
Cited by: 28
Author(s): Afshin Namdar, Garett Dunsmore, Shima Shahbaz, Petya Koleva, Lai Xu, Juan Jovel, Stan Houston, Shokrollah Elahi
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-021-84875-6
The effect of flue-curing procedure on the dynamic change of microbial diversity of tobaccos
Cited by: 9
Author(s): Binbin Hu, Kaiyuan Gu, Jiangshiqi Gong, Ke Zhang, Dan Chen, Xian He, Leo Chen, Kaixian Gao, Yan Jin, Kun Huang, Yuyan Zhu, Congming Zou
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-83497-2
Effects of maize (Zea mays) genotypes and microbial sources in shaping fall armyworm (Spodoptera frugiperda) gut bacterial communities
Cited by: 17
Author(s): Charles J. Mason, Kelli Hoover, Gary W. Felton
Software Mentions: 1
Published: over 3 years ago
10.1128/mBio.02657-19
Microbiomes Reduce Their Host’s Sensitivity to Interspecific Interactions
Cited by: 16
Author(s): Sara L. Jackrel, Kathryn C. Schmidt, Bradley J. Cardinale, Vincent J. Denef
Software Mentions: 1
Published: over 4 years ago
10.3390/genes7040012
De Novo Transcriptome Sequencing of Desert Herbaceous Achnatherum splendens (Achnatherum) Seedlings and Identification of Salt Tolerance Genes
Cited by: 19
Author(s): Jiangtao Liu, Yuelong Zhou, Changxin Luo, Yun Xiang, Lizhe An
Software Mentions: 1
Published: over 8 years ago
10.3390/nu12123828
Comparison of Different Dietary Indices as Predictors of Inflammation, Oxidative Stress and Intestinal Microbiota in Middle-Aged and Elderly Subjects
Cited by: 19
Author(s): Sergio Ruiz-Saavedra, Nuria Salazar, Ana Suárez, Clara G. de los Reyes‐Gavilán, Miguel Gueimonde, Sonia González
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12967-020-02572-w
PGM5-AS1 impairs miR-587-mediated GDF10 inhibition and abrogates progression of prostate cancer
Cited by: 18
Author(s): Lei Du, Yongli Gao
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-021-94831-z
Transcriptome profiling reveals potential genes involved in browning of fresh-cut eggplant (Solanum melongena L.)
Cited by: 6
Author(s): Xiaohui Liu, Aidong Zhang, Jie Zhao, Jing Shang, Zongwen Zhu, Xuexia Wu, Dingshi Zha
Software Mentions: 1
Published: over 3 years ago
10.1128/mBio.01325-20
Lateral Gene Transfer Drives Metabolic Flexibility in the Anaerobic Methane-Oxidizing Archaeal Family <i>Methanoperedenaceae</i>
Cited by: 48
Author(s): Andy O. Leu, Simon Jon McIlroy, Jun Ye, Donovan H. Parks, Victoria J. Orphan, Gene W. Tyson
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2020.01413
Rehmannia glutinosa Replant Issues: Root Exudate-Rhizobiome Interactions Clearly Influence Replant Success
Cited by: 14
Author(s): Zhang Bao, Leslie A. Weston, Mingjie Li, Xiaocheng Zhu, Paul A. Weston, Fan Feng, Bingyong Zhang, Liuji Zhang, Li Gu, Zhongyi Zhang
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-021-95901-y
Untargeted metabolomics of purple and orange-fleshed sweet potatoes reveals a large structural diversity of anthocyanins and flavonoids
Cited by: 13
Author(s): Alexandra Bennett, Elizabeth H. Mahood, Kai Fan, Gaurav D. Moghe
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-020-79733-w
Comparative genomics and metabolomics analysis of Riemerella anatipestifer strain CH-1 and CH-2
Cited by: 2
Author(s): Ji‐Bin Liu, Anchun Cheng, Mingshu Wang, Mafeng Liu, Dekang Zhu, Qiao Yang, Ying Wu, Renyong Jia, Shun Chen, Xinxin Zhao, Shaqiu Zhang, Juan Huang, Xumin Ou, Sai Mao, Qun Gao, Xingjian Wen, Ling Zhang, Yunya Liu, Yanling Yu, Bin Tian, Leichang Pan, Mujeeb Ur Rehman, Xiaoyue Chen
Software Mentions: 1
Published: almost 4 years ago
10.1074/jbc.RA120.014948
The G4 resolvase RHAU modulates mRNA translation and stability to sustain postnatal heart function and regeneration
Cited by: 5
Author(s): Mingyang Jiang, Han Hu, Ke Zhao, Ruo‐Min Di, Xinyi Huang, Yingchao Shi, Yunyun Yue, Junwei Nie, Shan Yu, Wengong Wang, Zhongzhou Yang
Software Mentions: 1
Published: almost 4 years ago
10.1128/mBio.00728-20
Pan-GWAS of Streptococcus agalactiae Highlights Lineage-Specific Genes Associated with Virulence and Niche Adaptation
Cited by: 41
Author(s): Andrea Gori, Odile B. Harrison, Ethwako Mlia, Yo Nishihara, Jia Mun Chan, Jacquline Msefula, Macpherson Mallewa, Queen Dube, Todd D. Swarthout, Angela H. Nobbs, Martin Maiden, Neil French, Robert S. Heyderman
Software Mentions: 1
Published: over 4 years ago
10.3390/cancers13143513
Expression of Retroelements in Cervical Cancer and Their Interplay with HPV Infection and Host Gene Expression
Cited by: 6
Author(s): Gislaine Curty, Albert N. Menezes, Ayslan Castro Brant, Miguel de Mulder Rougvie, Miguel Ângelo Martins Moreira, Marcelo A. Soares
Software Mentions: 1
Published: over 3 years ago
10.1002/cti2.1105
Prominent immune signatures of T cells are specifically associated with indolent B‐cell lymphoproliferative disorders and predict prognosis
Cited by: 3
Author(s): Shuhua Yi, Yu Zhang, Wei Xiong, Weiwei Chen, Zhaohua Hou, Yang Yang, Yuting Yan, Yunbo Wei, Rui Cui, Huijun Wang, Zhen Yu, Heng Li, Zengjun Li, Wei Liu, Rui Lv, Tingyu Wang, Kun Ru, Dehui Zou, Minglei Shu, Lugui Qiu, Di Yu
Software Mentions: 1
Published: almost 5 years ago
10.1093/gigascience/giz115
Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome
Cited by: 33
Author(s): Bo Song, Yue Song, Yuan Fang, Elizabeth Balyejusa Kizito, Sandra Ndagire Kamenya, Pamela Nahamya Kabod, Huan Liu, Samuel Muthemba, Robert Kariba, Joyce Njuguna, Solomon Maina, Francesca Stomeo, Appolinaire Djikeng, Prasad S. Hendre, Xiaoli Chen, Wenbin Chen, Xiuli Li, Wenjing Sun, Sibo Wang, Shifeng Cheng, Alice Muchugi, Ramni Jamnadass, Howard Shapiro, Allen Van Deynze, Huanming Yang, Jian Wang, Xun Xu, Damaris Achieng Odeny, Xin Liu
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-021-98651-z
TNF induces glycolytic shift in fibroblast like synoviocytes via GLUT1 and HIF1A
Cited by: 20
Author(s): Kathrin Koedderitzsch, Ekaterina Zezina, Lingzi Li, Matthias Herrmann, Nadine Biesemann
Software Mentions: 1
Published: about 3 years ago
10.1186/s40104-020-00502-w
Palm oil protects α-linolenic acid from rumen biohydrogenation and muscle oxidation in cashmere goat kids
Cited by: 4
Author(s): Xue Wang, Graeme Martin, Qi Wen, Shulin Liu, Yinhao Li, Binlin Shi, Xiaoyu Guo, Yanli Zhao, Y.P. Guo, Sumei Yan
Software Mentions: 1
Published: about 4 years ago
10.3390/genes7120111
Genome-Wide Survey Reveals Transcriptional Differences Underlying the Contrasting Trichome Phenotypes of Two Sister Desert Poplars
Cited by: 8
Author(s): Jianchao Ma, Xiaodong He, Xiaotao Bai, Zhimin Niu, Bingbing Duan, Ningning Chen, Xuemin Shao, Dongshi Wan
Software Mentions: 1
Published: almost 8 years ago
10.3389/fmicb.2019.00528
Genomic and Physiological Traits of the Marine Bacterium Alcaligenes aquatilis QD168 Isolated From Quintero Bay, Central Chile, Reveal a Robust Adaptive Response to Environmental Stressors
Cited by: 23
Author(s): Roberto E. Durán, Valentina Méndez, Laura Rodríguez-Castro, Bárbara Barra-Sanhueza, Francisco Salvà‐Serra, Edward R. B. Moore, Eduardo Castro-Nallar, Michael Seeger
Software Mentions: 1
Published: over 5 years ago
10.1038/s41392-020-00269-6
Comparison of nonhuman primates identified the suitable model for COVID-19
Cited by: 173
Author(s): Shuaiyao Lu, Yuan Zhao, Yu Wu, Yun Yang, Jian Gao, Junbin Wang, Dexuan Kuang, Mengli Yang, Jing Yang, Chang–Jin Ma, Jingwen Xu, Xiangyang Qian, Haiyan Li, Shuaiyang Zhao, Jingmei Li, Haixuan Wang, Haiting Long, Jingxian Zhou, Fangyu Luo, Kan Ding, Daoju Wu, Yong Zhang, Yinliang Dong, Yuqin Liu, Yinqiu Zheng, Xiaochen Lin, Jiao Li, Huanying Zheng, Qing Dai, Qiangming Sun, Yunzhang Hu, Changwen Ke, Hongqi Liu, Xiaozhong Peng
Software Mentions: 1
Published: over 4 years ago
10.1001/jamanetworkopen.2020.14622
Prediction of Overall Survival Among Female Patients With Breast Cancer Using a Prognostic Signature Based on 8 DNA Repair–Related Genes
Cited by: 16
Author(s): Dai Zhang, Shuanying Yang, Yiche Li, Jia Yao, Jian Ruan, Yi Zheng, Yao Deng, Na Li, Bajin Wei, Ying Wu, Zhen Zhai, Jun Lyu, Zhijun Dai
Software Mentions: 1
Published: about 4 years ago
10.1186/s12967-018-1640-2
Systematic analysis of lncRNA–miRNA–mRNA competing endogenous RNA network identifies four-lncRNA signature as a prognostic biomarker for breast cancer
Cited by: 188
Author(s): Chi Fan, Lei Ma, Ning Liu
Software Mentions: 1
Published: about 6 years ago
10.3389/fnmol.2021.620593
Severe Spinal Cord Injury in Rats Induces Chronic Changes in the Spinal Cord and Cerebral Cortex Metabolism, Adjusted by Thiamine That Improves Locomotor Performance
Cited by: 14
Author(s): Alexandra Boyko, Polina Tsepkova, Vasily A. Aleshin, Artem V. Artiukhov, Garik Mkrtchyan, Alexander L. Ksenofontov, L. A. Baratova, S. I. Ryabov, А. В. Граф, Victoria I. Bunik
Software Mentions: 1
Published: over 3 years ago
10.3390/insects12080745
Genome-Wide Identification of Neuropeptides and Their Receptors in an Aphid Endoparasitoid Wasp, Aphidius gifuensi
Cited by: 5
Author(s): Ke Xue, Zhenxiang Li, Yuqing Gao, Fang-Hua Liu, Zhenzhen Chen, He Tian, Tong‐Xian Liu, Yaobo Xu, Zhiwei Kang
Software Mentions: 1
Published: over 3 years ago
10.1186/s13020-020-00354-6
Integrated metabolomic and transcriptomic profiling reveals the tissue-specific flavonoid compositions and their biosynthesis pathways in Ziziphora bungeana
Cited by: 9
Author(s): Jiang He, Wei‐Jun Yang, Bo Cheng, Lina Ma, Dilinuer Tursunjiang, Zenghui Ding, Yong Li, Zhaofeng Wang, Yimian Ma, Li Guan
Software Mentions: 1
Published: over 4 years ago
10.1002/iid3.454
Cyclin‐dependent kinase 1 shows to be a potential genetic target for chemical cystitis
Cited by: 1
Author(s): Kun Wang, Huaping Du, Qianfeng Zhuang, Hao Lü, Ran Xu, Dong Xue
Software Mentions: 1
Published: over 3 years ago
10.3390/cells8121637
Identification and Validation Model for Informative Liquid Biopsy-Based microRNA Biomarkers: Insights from Germ Cell Tumor In Vitro, In Vivo and Patient-Derived Data
Cited by: 65
Author(s): João Lobo, Ad J. M. Gillis, Annette van den Berg, Lambert C. J. Dorssers, Gazanfer Belge, Klaus‐Peter Dieckmann, Henk P. Roest, Luc J. W. van der Laan, Jourik A. Gietema, Robert J. Hamilton, Carmen Jerónimo, Rui Henrique, Daniela Salvatori, Leendert H. J. Looijenga
Software Mentions: 1
Published: almost 5 years ago
10.3390/genes11080863
Extensive Genetic Connectivity and Historical Persistence Are Features of Two Widespread Tree Species in the Ancient Pilbara Region of Western Australia
Cited by: 3
Author(s): Heidi Nistelberger, Rachel M. Binks, Stephen van Leeuwen, David Coates, Shelley McArthur, B. MacDonald, Margaret Hankinson, Margaret Byrne
Software Mentions: 1
Published: over 4 years ago
10.3390/genes10070527
Genome-Wide Identification and Expression Analysis of the Metacaspase Gene Family in Gossypium Species
Cited by: 9
Author(s): Senmiao Fan, Àiyīng Liú, Zhen Zhang, Xianyan Zou, Xiao Jiang, Jinyong Huang, Liqiang Fan, Zhibin Zhang, Xiǎoyīng Dèng, Qún Gě, Wànkuí Gǒng, Jùnwén Lǐ, Jǔwǔ Gōng, Yùzhēn Shí, Kang Lei, Shuya Zhang, Tingting Jia, Lipeng Zhang, Yǒulù Yuán, Hǎihóng Shāng
Software Mentions: 1
Published: over 5 years ago
10.1038/s41438-020-00447-1
Almond diversity and homozygosity define structure, kinship, inbreeding, and linkage disequilibrium in cultivated germplasm, and reveal genomic associations with nut and seed weight
Cited by: 14
Author(s): Stefano Pavan, Chiara Delvento, Rosa Mazzeo, Francesca Ricciardi, Pasquale Losciale, Liliana Gaeta, Nunzio D’Agostino, Francesca Taranto, Raquel Sánchez‐Pérez, Luigi M. Ricciardi, Concetta Lotti
Software Mentions: 1
Published: almost 4 years ago
10.1186/s13287-020-01908-z
microRNA-375 released from extracellular vesicles of bone marrow mesenchymal stem cells exerts anti-oncogenic effects against cervical cancer
Cited by: 15
Author(s): Feng Ding, Jinhua Liu, Xiaofei Zhang
Software Mentions: 1
Published: about 4 years ago
10.3389/fnins.2020.00656
Non-photoreceptor Expression of Tulp1 May Contribute to Extensive Retinal Degeneration in Tulp1-/- Mice
Cited by: 10
Author(s): Arpad Palfi, Adlet Yesmambetov, Pete Humphries, Karsten Hokamp, G. Jane Farrar
Software Mentions: 1
Published: over 4 years ago
10.1038/s41438-020-0331-3
Genome-wide identification of microRNAs involved in the regulation of fruit ripening and climacteric stages in melon (Cucumis melo)
Cited by: 19
Author(s): Selinge Bai, Yunyun Tian, Chao Tan, Shunbuer Bai, Jinfeng Hao, Agula Hasi
Software Mentions: 1
Published: over 4 years ago
10.1038/s41419-020-03348-2
BTF3 confers oncogenic activity in prostate cancer through transcriptional upregulation of Replication Factor C
Cited by: 9
Author(s): Yuan Zhang, Xiang Gao, Jingyan Yi, Xiaolin Sang, Zhihong Dai, Tao Zhou, Min Wang, Limeng Shen, Yaxun Jia, Xie Daqing, Hai‐Ling Margaret Cheng, Zhiyu Liu, Pixu Liu
Software Mentions: 1
Published: almost 4 years ago
10.3390/genes10090701
The Soybean Laccase Gene Family: Evolution and Possible Roles in Plant Defense and Stem Strength Selection
Cited by: 34
Author(s): Quan Wang, Guang Li, Kang‐Cheng Zheng, Xiaobin Zhu, Jingjing Ma, Dongmei Wang, Kun Tang, Xingxing Feng, Jiantian Leng, Hui Yu, Suxin Yang
Software Mentions: 1
Published: about 5 years ago
10.3390/ijms21072394
Comparative Proteomic Analysis by iTRAQ Reveals that Plastid Pigment Metabolism Contributes to Leaf Color Changes in Tobacco (Nicotiana tabacum) during Curing
Cited by: 20
Author(s): Shengjiang Wu, Yushuang Guo, Muhammad Faheem Adil, Shafaque Sehar, Bin Cai, Zhangmin Xiang, Youyou Tu, Degang Zhao, Imran Haider Shamsi
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2015.00356
Shifts in methanogenic community composition and methane fluxes along the degradation of discontinuous permafrost
Cited by: 52
Author(s): Susanne Liebner, Lars Ganzert, Andrea Kiss, Shuai Yang, Dirk Wagner, Mette M. Svenning
Software Mentions: 1
Published: over 9 years ago
10.1038/s41598-020-63547-x
Soil bacterial community structure of mixed bamboo and broad-leaved forest based on tree crown width ratio
Cited by: 5
Author(s): Mei-man Zhang, Shaohui Fan, Fengying Guan, Xi Yan, Zi-xu Yin
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2021.610370
Characterization of the Oral Microbiome of Medicated Type-2 Diabetes Patients
Cited by: 15
Author(s): Ana C. Almeida-Santos, Daniela Martins-Mendes, Magdalena Gayà-Vidal, L. Pérez‐Pardal, Albano Beja‐Pereira
Software Mentions: 1
Published: almost 4 years ago
10.1002/bit.27836
Assessing the influence of perfusion on cardiac microtissue maturation: A heart‐on‐chip platform embedding peristaltic pump capabilities
Cited by: 10
Author(s): Daniela Cruz-Moreira, Roberta Visone, Francisco Vasques‐Nóvoa, António S. Barros, Adelino Leite‐Moreira, Alberto Redaelli, Matteo Moretti
Software Mentions: 1
Published: over 3 years ago
10.1002/mbo3.1236
Effect of the skincare product on facial skin microbial structure and biophysical parameters: A pilot study
Cited by: 4
Author(s): Bo Kyoung Hwang, Sado Lee, Joonoh Myoung, Seung Jin Hwang, Jun Man Lim, Eui Taek Jeong, Sun Gyoo Park, Sung Hun Youn
Software Mentions: 1
Published: about 3 years ago
10.3390/ph12010033
Characterisation of an Isogenic Model of Cisplatin Resistance in Oesophageal Adenocarcinoma Cells
Cited by: 9
Author(s): A Buckley, Becky A.S. Bibby, Margaret R. Dunne, Susan Kennedy, Maria Davern, Breandán N Kennedy, Stephen G. Maher, Jacintha O’Sullivan
Software Mentions: 1
Published: almost 6 years ago
10.3390/ani11051351
Dynamic Expression Profiles of Circular RNAs during Brown to White Adipose Tissue Transformation in Goats (Capra hircus)
Cited by: 7
Author(s): Xujia Zhang, Siyuan Zhan, Shi‐Zhong Yang, Tao Zhong, Jiazhong Guo, Jiaxue Cao, Yan Wang, Li Li, Hongping Zhang, Linjie Wang
Software Mentions: 1
Published: over 3 years ago
10.3390/ani9050232
Metatranscriptomic Analysis of Sub-Acute Ruminal Acidosis in Beef Cattle
Cited by: 21
Author(s): Ibukun M Ogunade, Andres A Pech-Cervantes, Hank Schweickart
Software Mentions: 1
Published: over 5 years ago
10.1186/s13068-019-1511-y
Quantitative proteomic analysis reveals the ethanologenic metabolism regulation of Ethanoligenens harbinense by exogenous ethanol addition
Cited by: 13
Author(s): Huahua Li, Xiaoxue Mei, Bingfeng Liu, Guo-Jun Xie, Nanqi Ren, Defeng Xing
Software Mentions: 1
Published: over 5 years ago
10.3389/fgene.2021.606816
Identifying Hypoxia Characteristics to Stratify Prognosis and Assess the Tumor Immune Microenvironment in Renal Cell Carcinoma
Cited by: 8
Author(s): Zhenan Zhang, Qinhan Li, Feng Wang, Binglei Ma, Yisen Meng, Qian Zhang
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2017.00966
Different Types of Dietary Fibers Trigger Specific Alterations in Composition and Predicted Functions of Colonic Bacterial Communities in BALB/c Mice
Cited by: 44
Author(s): Yuheng Luo, Ling Li Zhang, Hua Li, Hauke Smidt, André Denis G. Wright, Keying Zhang, Xuemei Ding, Qiufeng Zeng, Shiping Bai, Jianping Wang, Jian Li, Ping Zheng, Gang Tian, Jingyi Cai, Shuai Chen
Software Mentions: 1
Published: over 7 years ago
10.3390/pathogens3010211
Genome Sequencing of Xanthomonas vasicola Pathovar vasculorum Reveals Variation in Plasmids and Genes Encoding Lipopolysaccharide Synthesis, Type-IV Pilus and Type-III Secretion Effectors
Cited by: 23
Author(s): Arthur Wasukira, Max Coulter, Noorah Al-Sowayeh, Richard Thwaites, Konrad Paszkiewicz, Jerome Kubiriba, J. J. Smith, Murray Grant, David J. Studholme
Software Mentions: 1
Published: over 10 years ago
10.1038/s41598-020-67310-0
Mesenchymal subtype neuroblastomas are addicted to TGF-βR2/HMGCR-driven protein geranylgeranylation
Cited by: 2
Author(s): Michael Stokes, Jonnell Small, Alessandro Vasciaveo, Kenichi Shimada, Tal Hirschhorn, Andrea Califano, Brent R. Stockwell
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-67716-w
The effect of a diet based on rice straw co-fermented with probiotics and enzymes versus a fresh corn Stover-based diet on the rumen bacterial community and metabolites of beef cattle
Cited by: 15
Author(s): Yongqiang Hu, Yan He, Shan Gao, Zhiqiang Liao, Tao Lai, Haimei Zhou, Qianlin Chen, Lingyu Li, Hongbo Gao, Wei Lü
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2019.01184
Novel Yersinia enterocolitica Prophages and a Comparative Analysis of Genomic Diversity
Cited by: 4
Author(s): Junrong Liang, Zengqiang Kou, Shuai Qin, Yuhuang Chen, Zhenpeng Li, Chuchu Li, Ran Duan, Huijing Hao, Tao Zha, Wenpeng Gu, Yuanming Huang, Meng Xiao, Huaiqi Jing, Xin Wang
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pgen.1006929
Comprehensive analysis of nucleocytoplasmic dynamics of mRNA in Drosophila cells
Cited by: 21
Author(s): Tao Chen, Bas van Steensel
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0223417
Effect of host genotype and Eimeria acervulina infection on the metabolome of meat-type chickens
Cited by: 10
Author(s): Samuel E. Aggrey, Marie C. Milfort, Alberta L. Fuller, Jianmin Yuan, Romdhane Rekaya
Software Mentions: 1
Published: about 5 years ago
10.3390/ijms21030975
Genome-Wide Analysis of the MYB Transcription Factor Superfamily in Physcomitrella patens
Cited by: 32
Author(s): Xiaojun Pu, Lixin Yang, Lina Liu, Xueyi Dong, Silin Chen, Zexi Chen, Gaojing Liu, Yulin Jia, Wenya Yuan, Li Liu
Software Mentions: 1
Published: almost 5 years ago
10.3389/fgene.2020.577897
Alternative Splicing Diversified the Heat Response and Evolutionary Strategy of Conserved Heat Shock Protein 90s in Hexaploid Wheat (Triticum aestivum L.)
Cited by: 9
Author(s): Yunze Lu, Peng Zhao, Aihua Zhang, Lingjian Ma, Shengbao Xu, Xiaoming Wang
Software Mentions: 1
Published: almost 4 years ago
10.3390/microorganisms9040782
Different Responses of Bacterial and Archaeal Communities in River Sediments to Water Diversion and Seasonal Changes
Cited by: 12
Author(s): Jiali Lv, Yangdan Niu, Rong Yuan, Shiqin Wang
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0235268
Dynamic longitudinal behavior in animals exposed to chronic social defeat stress
Cited by: 10
Author(s): Marlon Wendelmuth, M. Willam, Hristo Todorov, Konstantin Radyushkin, Susanne Gerber, Susann Schweiger
Software Mentions: 1
Published: over 4 years ago
10.1186/s12864-017-4114-7
Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor
Cited by: 10
Author(s): Yohann Daguerre, Elisabetta Levati, Joske Ruytinx, Émilie Tisserant, Emmanuel Morin, Annegret Kohler, Barbara Montanini, Simone Ottonello, Annick Brun, Claire Veneault‐Fourrey, Francis Martin
Software Mentions: 1
Published: about 7 years ago
10.1186/1471-2164-15-45
The transcriptome of the NZ endemic sea urchin Kina (Evechinus chloroticus)
Cited by: 23
Author(s): Gareth Benjamin Gillard, Daniel J. Garama, Chris M. Brown
Software Mentions: 1
Published: almost 11 years ago
10.1186/s13072-016-0109-x
MS_HistoneDB, a manually curated resource for proteomic analysis of human and mouse histones
Cited by: 38
Author(s): Sara El Kennani, Annie Adrait, Alexey K. Shaytan, Saadi Khochbin, Christophe Bruley, Anna R. Panchenko, David Landsman, Delphine Pflieger, Jérôme Govin
Software Mentions: 1
Published: almost 8 years ago
10.3389/fendo.2021.719843
3D Atlas of the Pituitary Gland of the Model Fish Medaka (Oryzias latipes)
Cited by: 12
Author(s): Muhammad Rahmad Royan, Khadeeja Siddique, Gergely Csúcs, Maja Puchades, Rasoul Nourizadeh-Lillabadi, Jan G. Bjaalie, Christiaan V. Henkel, Finn‐Arne Weltzien, Romain Fontaine
Software Mentions: 1
Published: about 3 years ago
10.1186/s12864-019-6103-5
Complex and dynamic transcriptional changes allow the helminth Fasciola gigantica to adjust to its intermediate snail and definitive mammalian hosts
Cited by: 24
Author(s): Xiaoxuan Zhang, Krystyna Cwiklinski, Rui-Si Hu, Wei Zheng, Zhao-An Sheng, Fu-Kai Zhang, Hany M. Elsheikha, John P. Dalton, Xing‐Quan Zhu
Software Mentions: 1
Published: about 5 years ago
10.3389/fmed.2020.00538
Self-Balance of Intestinal Flora in Spouses of Patients With Rheumatoid Arthritis
Cited by: 5
Author(s): Zhihui Liu, Yongwei Wu, Yubin Luo, Shixiong Wei, Chenyang Lu, Yi Zhou, Jing Wang, T. Miao, Hui Lin, Yi Zhao, Qi Liu, Yi Liu
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-020-73655-3
Detection of tuberculosis in cynomolgus macaques (Macaca fascicularis) using a supplementary Monkey Interferon Gamma Releasing Assay (mIGRA)
Cited by: 11
Author(s): Saradee Warit, Pamaree Billamas, Nampueng Makhao, Sarinya Jaitrong, Tada Juthayothin, Wandee Yindeeyoungyeon, Kanchana Dokladda, Nat Smittipat, Taratorn Kemthong, Suthirote Meesawat, N Kongsombat, C Kraitat, Therdsak Prammananan, Tanapat Palaga, Angkana Chaiprasert, Suchinda Malaivijitnond
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0188838
Virulence genes and subclone status as markers of experimental virulence in a murine sepsis model among Escherichia coli sequence type 131 clinical isolates from Spain
Cited by: 7
Author(s): Irene Merino, Stephen Porter, Brian Johnston, Connie Clabots, Evelyn Shaw, Juan Pablo Horcajada, Rafael Cantón, Patrícia Ruíz-Garbajosa, James R. Johnson
Software Mentions: 1
Published: almost 7 years ago
10.3389/fimmu.2020.579776
CD4+CD8+ T-Lymphocytes in Xenogeneic and Human Graft-versus-Host Disease
Cited by: 7
Author(s): Kutaiba Alhaj Hussen, David Michonneau, Vincent Biajoux, Seydou Keita, Laetitia Dubouchet, Elisabeth Nelson, Niclas Setterblad, Hélène Le Buanec, Jean‐David Bouaziz, Fabien Guimiot, Gérard Socié, Bruno Canque
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12864-020-6715-9
Genome-wide analysis of the citrus B3 superfamily and their association with somatic embryogenesis
Cited by: 10
Author(s): Zheng Liu, Xiao Xia Ge, Xiao Meng Wu, Qiang Xu, Ross G. Atkinson, Guo Wen
Software Mentions: 1
Published: over 4 years ago
10.3389/fendo.2020.00628
Correlation Between Fecal Metabolomics and Gut Microbiota in Obesity and Polycystic Ovary Syndrome
Cited by: 49
Author(s): Ling Zhou, Zhexin Ni, Jin Yu, Wen Cheng, Zhen Cai, Chaoqin Yu
Software Mentions: 1
Published: about 4 years ago
10.3390/ijms17111814
Assessing Heterogeneity of Osteolytic Lesions in Multiple Myeloma by 1H HR-MAS NMR Metabolomics
Cited by: 5
Author(s): Laurette Tavel, Francesca Fontana, Josè Manuel Garcia Manteiga, Silvia Mari, E. Mariani, Enrico Caneva, Roberto Sitia, F. Camnasio, Magda Marcatti, Simone Cenci, Giovanna Musco
Software Mentions: 1
Published: about 8 years ago
10.3389/fimmu.2021.612144
Hepcidin Upregulation in Lung Cancer: A Potential Therapeutic Target Associated With Immune Infiltration
Cited by: 38
Author(s): Yumei Fan, Bing Liu, Fei Chen, Zhen Song, Bihui Han, Yanxiu Meng, Jiajie Hou, Pengxiu Cao, Yan‐Zhong Chang, Karsoon Tan
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-020-75853-5
Glucocorticoid-dependent transcription in skin requires epidermal expression of the glucocorticoid receptor and is modulated by the mineralocorticoid receptor
Cited by: 3
Author(s): Lisa M. Sevilla, Judit Bigas, Álvaro Chiner‐Oms, Iñaki Comas, Vicente Sentandreu, Paloma Pérez
Software Mentions: 1
Published: about 4 years ago
10.3390/microorganisms7120678
Insights into Antagonistic Interactions of Multidrug Resistant Bacteria in Mangrove Sediments from the South Indian State of Kerala
Cited by: 12
Author(s): Madangchanok Imchen, Ravali Krishna Vennapu, Preetam Ghosh, Ranjith Kumavath
Software Mentions: 1
Published: almost 5 years ago
10.3389/fimmu.2020.00029
CD44 Loss Disrupts Lung Lipid Surfactant Homeostasis and Exacerbates Oxidized Lipid-Induced Lung Inflammation
Cited by: 24
Author(s): Yifei Dong, Arif A. Arif, Jian Guo, Zongyi Ha, Sally S. M. Lee-Sayer, Grace F. T. Poon, Manisha Dosanjh, Calvin D. Roskelley, Tao Huan, Pauline Johnson
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12864-018-4861-0
Mixed evolutionary origins of endogenous biomass-depolymerizing enzymes in animals
Cited by: 6
Author(s): Wai Hoong Chang, Alvina G. Lai
Software Mentions: 1
Published: over 6 years ago
10.1002/fsn3.1010
Effect of different<i>Lactobacillus</i>species on volatile and nonvolatile flavor compounds in juices fermentation
Cited by: 37
Author(s): Shumao Cui, Nan Zhao, Wenwei Liu, Fang Zhao, Zheng SongYou, Weijun Wang, Wei Chen
Software Mentions: 1
Published: over 5 years ago
10.1186/s12864-018-5078-y
Bacterial endosymbiont Cardinium cSfur genome sequence provides insights for understanding the symbiotic relationship in Sogatella furcifera host
Cited by: 29
Author(s): Zhen Zeng, Yating Fu, Dongyang Guo, Yuxuan Wu, Olugbenga Emmanuel Ajayi, Qingfa Wu
Software Mentions: 1
Published: about 6 years ago
10.3390/ijms21239059
Exercise and the Cisd2 Prolongevity Gene: Two Promising Strategies to Delay the Aging of Skeletal Muscle
Cited by: 10
Author(s): Yuan Teng, Jing Ya Wang, Y. H. Hui, Ting Fen Tsai
Software Mentions: 1
Published: almost 4 years ago
10.1590/1414-431X20164897
Analyzing gene expression profiles in dilated cardiomyopathy via bioinformatics methods
Cited by: 3
Author(s): Liming Wang, Li Zhu, Rumei Luan, L. Wang, Jian Fu, X. Wang, Li Sui
Software Mentions: 1
Published: almost 9 years ago
10.1038/s41598-020-76497-1
NLRP3 inflammasome deficiency attenuates metabolic disturbances involving alterations in the gut microbial profile in mice exposed to high fat diet
Cited by: 20
Author(s): Marina Sokolova, Kuan Yang, Simen Hyll Hansen, Mieke C. Louwe, Martin Kummen, Johannes Espolin Roksund Hov, Ivar Sjaastad, Rolf K. Berge, Bente Halvorsen, Pål Aukrust, Arne Yndestad, Trine Ranheim
Software Mentions: 1
Published: almost 4 years ago
10.1002/2211-5463.12563
New biomarkers of Kawasaki disease identified by urine proteomic analysis
Cited by: 7
Author(s): Huimin Hu, Hongwu Du, Jiawen Cui, Deqin Feng, Zhenhong Du
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0213676
Carbohydrate intake attenuates post-exercise plasma levels of cytochrome P450-generated oxylipins
Cited by: 27
Author(s): David C. Nieman, Nicholas D. Gillitt, Guan-Yuan Chen, Qibin Zhang, Camila A. Sakaguchi, Ella H. Stephan
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-020-78721-4
Phenotypic and genetic characterization of differential galacto-oligosaccharide utilization in Lactobacillus plantarum
Cited by: 11
Author(s): Jori Führen, Markus Schwalbe, Lucía Peralta-Marzal, Christiane Rösch, Henk A. Schols, Michiel Kleerebezem
Software Mentions: 1
Published: almost 4 years ago
10.3390/ijms21239015
Unique Role of Caffeine Compared to Other Methylxanthines (Theobromine, Theophylline, Pentoxifylline, Propentofylline) in Regulation of AD Relevant Genes in Neuroblastoma SH-SY5Y Wild Type Cells
Cited by: 13
Author(s): Daniel Janitschke, Anna Andrea Lauer, C Bachmann, Martin S. Seyfried, Heike S. Grimm, Tobias Hartmann, Marcus O. W. Grimm
Software Mentions: 1
Published: almost 4 years ago
10.1186/s40851-019-0146-y
Gene expression profiles of dicyemid life-cycle stages may explain how dispersing larvae locate new hosts
Cited by: 0
Author(s): Tsai-Ming Lu, Hidetaka Furuya, Noriyuki Satoh
Software Mentions: 1
Published: about 5 years ago
10.3390/ijms17111924
Varietal Dependence of GLVs Accumulation and LOX-HPL Pathway Gene Expression in Four Vitis vinifera Wine Grapes
Cited by: 18
Author(s): Qiu-Man Xu, Xiaoqing Xu, Keji Yu, Baoqing Zhu, Yi-Bin Lan, Chang‐Qing Duan, Qiu-Hong Pan
Software Mentions: 1
Published: almost 8 years ago