cran: pheatmap | Projects | Ecosyste.ms: Papers

10.1186/s12967-018-1640-2

Systematic analysis of lncRNA–miRNA–mRNA competing endogenous RNA network identifies four-lncRNA signature as a prognostic biomarker for breast cancer
Cited by: 188
Author(s): Chi Fan, Lei Ma, Ning Liu
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-24266-6

Duplication and diversification of lectin receptor-like kinases (LecRLK) genes in soybean
Cited by: 26
Author(s): Pingli Liu, Yuan Huang, Peng-Hao Shi, Meng Yu, Jianbo Xie, Lulu Xie
Software Mentions: 1
Published: over 8 years ago

10.3389/fnins.2019.00909

Linear Registration of Brain MRI Using Knowledge-Based Multiple Intermediator Libraries
Cited by: 9
Author(s): Mengjie Zhang, Yanqiu Feng, Wufan Chen, Xin Li, Andréia V. Faria, Qianjin Feng, Susumu Mori
Software Mentions: 1
Published: about 7 years ago

10.3389/fnins.2020.00656

Non-photoreceptor Expression of Tulp1 May Contribute to Extensive Retinal Degeneration in Tulp1-/- Mice
Cited by: 10
Author(s): Arpad Palfi, Adlet Yesmambetov, Pete Humphries, Karsten Hokamp, G. Jane Farrar
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-28220-4

Supraphysiological Levels of Oxygen Exposure During the Neonatal Period Impairs Signaling Pathways Required for Learning and Memory
Cited by: 9
Author(s): Manimaran Ramani, Ranjit Kumar, Brian Halloran, Charitharth Vivek Lal, Namasivayam Ambalavanan, Lori L. McMahon
Software Mentions: 1
Published: over 8 years ago

10.1186/s12967-019-02145-6

Long non-coding RNA BZRAP1-AS1 silencing suppresses tumor angiogenesis in hepatocellular carcinoma by mediating THBS1 methylation
Cited by: 32
Author(s): Weiwei Wang, Guoyong Chen, Bing Wang, Zheng Yuan, Guangbo Liu, Biao Niu, Yongfeng Chen, Shaotang Zhou, Jin He, Hao Xue
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-34183-3

The biological role of N-acyl-homoserine lactone-based quorum sensing (QS) in EPS production and microbial community assembly during anaerobic granulation process
Cited by: 42
Author(s): Haijun Ma, Sijia Ma, Haidong Hu, Lili Ding, Hongqiang Ren
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-35058-3

Correlation between genomic index lesions and mpMRI and 68Ga-PSMA-PET/CT imaging features in primary prostate cancer
Cited by: 26
Author(s): Claudia Kesch, Jan Philipp Radtke, Axel Wintsche, Manuel Wiesenfarth, Mariska Luttje, Claudia Gasch, Svenja Dieffenbacher, Carine Pecqueux, Doğu Teber, Gencay Hatiboglu, Joanne Nyarangi‐Dix, Tobias Simpfendörfer, Gita Schönberg, Antonia Dimitrakopoulou-Strauß, Martin T. Freitag, Anette Duensing, Carsten Grüllich, Dirk Jäger, Michael Goetz, Niels Grabe, Michal R. Schweiger, Sascha Pahernik, Sven Perner, Esther Herpel, Wilfried Roth, Kathrin Wieczorek, Klaus H. Maier‐Hein, Jürgen Debus, Uwe Haberkorn, Frederik L. Giesel, Joerg Galle, Boris Hadaschik, Heinz–Peter Schlemmer, Markus Hohenfellner, David Bonekamp, Holger Sültmann, Stefan Duensing
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-35403-6

In-depth validation of total HIV-1 DNA assays for quantification of various HIV-1 subtypes
Cited by: 26
Author(s): Sofie Rutsaert, Ward De Spiegelaere, Clarissa Van Hecke, Marie‐Angélique De Scheerder, Maja Kiselinova, Karen Vervisch, Wim Trypsteen, Linos Vandekerckhove
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-35625-8

Genome-wide identification and characterization of CKIN/SnRK gene family in Chlamydomonas reinhardtii
Cited by: 31
Author(s): Francisco Colina, Joana Amaral, María Teresa Doménech Carbó, Glória Pinto, Amadeu M.V.M. Soares, María Jesús Cañal, Luís Valledor
Software Mentions: 1
Published: almost 8 years ago

10.3389/fnmol.2021.620593

Severe Spinal Cord Injury in Rats Induces Chronic Changes in the Spinal Cord and Cerebral Cortex Metabolism, Adjusted by Thiamine That Improves Locomotor Performance
Cited by: 14
Author(s): Alexandra Boyko, Polina Tsepkova, Vasily A. Aleshin, Artem V. Artiukhov, Garik Mkrtchyan, Alexander L. Ksenofontov, L. A. Baratova, S. I. Ryabov, А. В. Граф, Victoria I. Bunik
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-46062-6

Particle morphomics by high-throughput dynamic image analysis
Cited by: 11
Author(s): Youmin Sun, Zhengqing Cai, Jie Fu
Software Mentions: 1
Published: over 7 years ago

10.7717/peerj.7544

Crucial lncRNAs associated with adipocyte differentiation from human adipose-derived stem cells based on co-expression and ceRNA network analyses
Cited by: 15
Author(s): Kana Chen, Shujie Xie, Wujun Jin
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-47789-y

Small RNA profiling in Pinus pinaster reveals the transcriptome of developing seeds and highlights differences between zygotic and somatic embryos
Cited by: 27
Author(s): Andreia S. Rodrigues, Inês Chaves, Bruno Vasques Costa, Yao‐Cheng Lin, Susana Lopes, Ana Milhinhos, Yves Van de Peer, Celia María Gonzalo Miguel
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-48608-0

iTRAQ-based quantitative analysis reveals proteomic changes in Chinese cabbage (Brassica rapa L.) in response to Plasmodiophora brassicae infection
Cited by: 17
Author(s): Mei Lan, Guoliang Li, Jingfeng Hu, Hongli Yang, Liqin Zhang, Xuezhong Xu, Jiajia Li, Jiangming He, Rifei Sun
Software Mentions: 1
Published: about 7 years ago

10.1016/j.omtn.2019.04.013

MicroRNA-1305 Inhibits the Stemness of LCSCs and Tumorigenesis by Repressing the UBE2T-Dependent Akt-Signaling Pathway
Cited by: 35
Author(s): Xiaoyong Wei, Xiaolong You, Jianlong Zhang, Cuncai Zhou
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-49532-z

Early Life Supraphysiological Levels of Oxygen Exposure Permanently Impairs Hippocampal Mitochondrial Function
Cited by: 11
Author(s): Manimaran Ramani, Kiara Miller, Jamelle Brown, Ranjit Kumar, Jegen Kadasamy, Lori L. McMahon, Scott W. Ballinger, Namasivayam Ambalavanan
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-49501-6

Understanding pseudo-albinism in sole (Solea senegalensis): a transcriptomics and metagenomics approach
Cited by: 12
Author(s): Patrícia I. S. Pinto, Cláudia C. Guerreiro, Rita A. Costa, Juan F. Martínez-Blanch, Carlos Carballo, Francisco M. Codoñer, Manuel Manchado, Deborah M. Power
Software Mentions: 1
Published: about 7 years ago

10.1016/j.dib.2020.105179

Proteome data to explore the axolotl limb regeneration capacity at neotenic and metamorphic stages
Cited by: 2
Author(s): Turan Demircan, Mustafa Sibai, Ebru Altuntaş
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-51707-7

Illumina-based Analysis of Endophytic Bacterial Diversity of four Allium species
Cited by: 17
Author(s): Yonghong Huang
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-52562-2

Expansion, isolation and first characterization of bovine Th17 lymphocytes
Cited by: 13
Author(s): Patricia Cunha, Yves Le Vern, Christophe Gitton, Pierre Germon, Gilles Foucras, Pascal Rainard
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-019-52970-4

Identifying sex-linked markers in Litoria aurea: a novel approach to understanding sex chromosome evolution in an amphibian
Cited by: 13
Author(s): Jarrod Sopniewski, Foyez Shams, Benjamin C. Scheele, Ben J. Kefford, Tariq Ezaz
Software Mentions: 1
Published: almost 7 years ago

10.3389/fgene.2020.577897

Alternative Splicing Diversified the Heat Response and Evolutionary Strategy of Conserved Heat Shock Protein 90s in Hexaploid Wheat (Triticum aestivum L.)
Cited by: 9
Author(s): Yunze Lu, Peng Zhao, Aihua Zhang, Lingjian Ma, Shengbao Xu, Xiaoming Wang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2020.592128

Comparative mRNA and LncRNA Analysis of the Molecular Mechanisms Associated With Low Silk Production in Bombyx mori
Cited by: 4
Author(s): Jinghua Ruan, Meiyu Wu, Xiaogang Ye, Shuo Zhao, Jianshe Liang, Lupeng Ye, Zhengying You, Boxiong Zhong
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-62199-1

Symbiotic nitrogen fixation and endophytic bacterial community structure in Bt-transgenic chickpea (Cicer arietinum L)
Cited by: 14
Author(s): Alok Das, Harika Annapragada, S. K. Singh, M. Senthilkumar, Narendra Pratap Singh
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-63547-x

Soil bacterial community structure of mixed bamboo and broad-leaved forest based on tree crown width ratio
Cited by: 5
Author(s): Mei-man Zhang, Shaohui Fan, Fengying Guan, Xi Yan, Zi-xu Yin
Software Mentions: 1
Published: over 6 years ago

10.1016/j.dib.2020.105523

Data analysis of PD-1 antibody in the treatment of melanoma patients
Cited by: 2
Author(s): Ting Li, Chao Zhang, Gang Zhao, Xinwei Zhang, Mengze Hao, Shafat Hassan, Min Zhang, Hong Zheng, Da Yang, Liang Liu, Farideh Mehraein-Ghomi, Xu Bai, Kexin Chen, Wei Zhang, Jilong Yang
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.4030

Whole genome sequencing of Rhodotorula mucilaginosa isolated from the chewing stick (Distemonanthus benthamianus): insights into Rhodotorula phylogeny, mitogenome dynamics and carotenoid biosynthesis
Cited by: 19
Author(s): Han Ming Gan, Bolaji N. Thomas, Nicole T. Cavanaugh, Grace Morales, Ashley N Mayers, Michael A. Savka, André O. Hudson
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-020-67310-0

Mesenchymal subtype neuroblastomas are addicted to TGF-βR2/HMGCR-driven protein geranylgeranylation
Cited by: 2
Author(s): Michael Stokes, Jonnell Small, Alessandro Vasciaveo, Kenichi Shimada, Tal Hirschhorn, Andrea Califano, Brent R. Stockwell
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-67716-w

The effect of a diet based on rice straw co-fermented with probiotics and enzymes versus a fresh corn Stover-based diet on the rumen bacterial community and metabolites of beef cattle
Cited by: 15
Author(s): Yongqiang Hu, Yan He, Shan Gao, Zhiqiang Liao, Tao Lai, Haimei Zhou, Qianlin Chen, Lingyu Li, Hongbo Gao, Wei Lü
Software Mentions: 1
Published: over 6 years ago

10.1186/s12967-020-02572-w

PGM5-AS1 impairs miR-587-mediated GDF10 inhibition and abrogates progression of prostate cancer
Cited by: 18
Author(s): Lei Du, Yongli Gao
Software Mentions: 1
Published: almost 6 years ago

10.3389/fendo.2021.719843

3D Atlas of the Pituitary Gland of the Model Fish Medaka (Oryzias latipes)
Cited by: 12
Author(s): Muhammad Rahmad Royan, Khadeeja Siddique, Gergely Csúcs, Maja Puchades, Rasoul Nourizadeh-Lillabadi, Jan G. Bjaalie, Christiaan V. Henkel, Finn‐Arne Weltzien, Romain Fontaine
Software Mentions: 1
Published: about 5 years ago

10.3390/pathogens3010211

Genome Sequencing of Xanthomonas vasicola Pathovar vasculorum Reveals Variation in Plasmids and Genes Encoding Lipopolysaccharide Synthesis, Type-IV Pilus and Type-III Secretion Effectors
Cited by: 23
Author(s): Arthur Wasukira, Max Coulter, Noorah Al-Sowayeh, Richard Thwaites, Konrad Paszkiewicz, Jerome Kubiriba, J. J. Smith, Murray Grant, David J. Studholme
Software Mentions: 1
Published: over 12 years ago

10.7717/peerj.11496

Identification of potential gene signatures associated with osteosarcoma by integrated bioinformatics analysis
Cited by: 13
Author(s): Yutao Jia, Yang Liu, Zhihua Han, Rong Tian
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.4514

Assessing soil bacterial community and dynamics by integrated high-throughput absolute abundance quantification
Cited by: 57
Author(s): Jun Lou, Li Yang, Haizhen Wang, Laosheng Wu, Jianming Xu
Software Mentions: 1
Published: over 8 years ago

10.3389/fimmu.2020.02063

Excessive Neutrophils and Neutrophil Extracellular Traps in COVID-19
Cited by: 184
Author(s): Jun Wang, Qian Li, Yongmei Yin, Yingying Zhang, Yingying Cao, Xiao Lin, Lihua Huang, Daniel Hoffmann, Mengji Lu, Yuanwang Qiu
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-73655-3

Detection of tuberculosis in cynomolgus macaques (Macaca fascicularis) using a supplementary Monkey Interferon Gamma Releasing Assay (mIGRA)
Cited by: 11
Author(s): Saradee Warit, Pamaree Billamas, Nampueng Makhao, Sarinya Jaitrong, Tada Juthayothin, Wandee Yindeeyoungyeon, Kanchana Dokladda, Nat Smittipat, Taratorn Kemthong, Suthirote Meesawat, N Kongsombat, C Kraitat, Therdsak Prammananan, Tanapat Palaga, Angkana Chaiprasert, Suchinda Malaivijitnond
Software Mentions: 1
Published: about 6 years ago

10.3389/fgene.2021.606816

Identifying Hypoxia Characteristics to Stratify Prognosis and Assess the Tumor Immune Microenvironment in Renal Cell Carcinoma
Cited by: 8
Author(s): Zhenan Zhang, Qinhan Li, Feng Wang, Binglei Ma, Yisen Meng, Qian Zhang
Software Mentions: 1
Published: over 5 years ago

10.3390/cells10071832

The FibromiR miR-214-3p Is Upregulated in Duchenne Muscular Dystrophy and Promotes Differentiation of Human Fibro-Adipogenic Muscle Progenitors
Cited by: 3
Author(s): Nicole Arrighi, Claudine Moratal, Grégoire Savary, Julien Fassy, Nicolas Nottet, Nicolas Pons, Noémie Clement, Sandy Fellah, Romain Larrue, Virginie Magnone, Kévin Lebrigand, Nicolas Pottier, Claude J. Dechesne, Georges Vassaux, Christian Dani, Pascal Peraldi, Bernard Mari
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-75853-5

Glucocorticoid-dependent transcription in skin requires epidermal expression of the glucocorticoid receptor and is modulated by the mineralocorticoid receptor
Cited by: 3
Author(s): Lisa M. Sevilla, Judit Bigas, Álvaro Chiner‐Oms, Iñaki Comas, Vicente Sentandreu, Paloma Pérez
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcimb.2018.00005

Identification and Characterization of Blood and Neutrophil-Associated Microbiomes in Patients with Severe Acute Pancreatitis Using Next-Generation Sequencing
Cited by: 59
Author(s): Qiurong Li, Chenyang Wang, Chunbo Tang, Xiuhe Zhao, Qi He, Jieshou Li
Software Mentions: 1
Published: almost 9 years ago

10.3390/cells8121637

Identification and Validation Model for Informative Liquid Biopsy-Based microRNA Biomarkers: Insights from Germ Cell Tumor In Vitro, In Vivo and Patient-Derived Data
Cited by: 65
Author(s): João Lobo, Ad J. M. Gillis, Annette van den Berg, Lambert C. J. Dorssers, Gazanfer Belge, Klaus‐Peter Dieckmann, Henk P. Roest, Luc J. W. van der Laan, Jourik A. Gietema, Robert J. Hamilton, Carmen Jerónimo, Rui Henrique, Daniela Salvatori, Leendert H. J. Looijenga
Software Mentions: 1
Published: almost 7 years ago

10.3389/fendo.2020.00628

Correlation Between Fecal Metabolomics and Gut Microbiota in Obesity and Polycystic Ovary Syndrome
Cited by: 49
Author(s): Ling Zhou, Zhexin Ni, Jin Yu, Wen Cheng, Zhen Cai, Chaoqin Yu
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-76497-1

NLRP3 inflammasome deficiency attenuates metabolic disturbances involving alterations in the gut microbial profile in mice exposed to high fat diet
Cited by: 20
Author(s): Marina Sokolova, Kuan Yang, Simen Hyll Hansen, Mieke C. Louwe, Martin Kummen, Johannes Espolin Roksund Hov, Ivar Sjaastad, Rolf K. Berge, Bente Halvorsen, Pål Aukrust, Arne Yndestad, Trine Ranheim
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13020-020-00354-6

Integrated metabolomic and transcriptomic profiling reveals the tissue-specific flavonoid compositions and their biosynthesis pathways in Ziziphora bungeana
Cited by: 9
Author(s): Jiang He, Wei‐Jun Yang, Bo Cheng, Lina Ma, Dilinuer Tursunjiang, Zenghui Ding, Yong Li, Zhaofeng Wang, Yimian Ma, Li Guan
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-78721-4

Phenotypic and genetic characterization of differential galacto-oligosaccharide utilization in Lactobacillus plantarum
Cited by: 11
Author(s): Jori Führen, Markus Schwalbe, Lucía Peralta-Marzal, Christiane Rösch, Henk A. Schols, Michiel Kleerebezem
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2017.01936

Role of Gut Microbiota on Cardio-Metabolic Parameters and Immunity in Coronary Artery Disease Patients with and without Type-2 Diabetes Mellitus
Cited by: 73
Author(s): Lidia Sánchez-Alcoholado, Daniel Castellano‐Castillo, Laura Jordán-Martínez, Isabel Moreno-Indias, Pilar Cardila-Cruz, Daniel Elena, Antonio J. Muñoz-García, María Isabel Queipo‐Ortuño, Manuel Jiménez‐Navarro
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2020.581610

Comparison of Bacterial Microbiota in Raw Mare’s Milk and Koumiss Using PacBio Single Molecule Real-Time Sequencing Technology
Cited by: 8
Author(s): Meng Zhang, Na Le Dang, Dongyan Ren, Feiyan Zhao, Ruirui Lv, Teng Ma, Qiuhua Bao, Bilige Menghe, Wenjun Liu
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2021.726074

Characterization and Genomic Analysis of Marinobacter Phage vB_MalS-PS3, Representing a New Lambda-Like Temperate Siphoviral Genus Infecting Algae-Associated Bacteria
Cited by: 6
Author(s): Huan Liu, Kaiyang Zheng, Baohong Liu, Yantao Liang, Siyuan You, Wenjing Zhang, Xinran Zhang, Yaqi Jie, Hongbing Shao, Yong Jiang, Cui Guo, Hui He, Hualong Wang, Yeong Yik Sung, Wen Jye Mok, Li Lian Wong, Andrew McMinn, Min Wang
Software Mentions: 1
Published: about 5 years ago

10.7717/peerj.11329

Genome-wide identification, classification, and expression analysis of the HSF gene family in pineapple (Ananas comosus)
Cited by: 7
Author(s): Lulu Wang, Qing Liu, Mengnan Chai, Huihuang Chen, Mohammad Aslam, Xiaoping Niu, Yuan Qin, Hanyang Cai
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.617030

Integrative Metagenomics–Metabolomics for Analyzing the Relationship Between Microorganisms and Non-volatile Profiles of Traditional Xiaoqu
Cited by: 20
Author(s): Chi Zhao, Wei Su, Yu Mu, Yingchun Mu, Li Jiang
Software Mentions: 1
Published: over 5 years ago

10.1186/s40246-018-0186-y

Germline TP53 and MSH6 mutations implicated in sporadic triple-negative breast cancer (TNBC): a preliminary study
Cited by: 8
Author(s): Dandan Yi, Lei Xu, Jiaqi Luo, Xiaobin You, Tao Huang, Yi Zi, Xiaoting Li, Ru Wang, Zaixuan Zhong, Xiaoqiao Tang, Ang Li, Yujian Shi, Jianmei Rao, Yifen Zhang, Jianfeng Sang
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.54095

Circulating myeloid cells invade the central nervous system to mediate cachexia during pancreatic cancer
Cited by: 32
Author(s): Kevin G. Burfeind, Xiao‐Dong Zhu, Mason A. Norgard, Peter R. Levasseur, Christian Huisman, Abigail C. Buenafe, Brennan Olson, Katherine A. Michaelis, Eileen Ruth S. Torres, Sophia Jeng, Shannon K. McWeeney, Jacob Raber, Daniel L. Marks
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2017.01051

RNA Profiling Analysis of the Serum Exosomes Derived from Patients with Active and Latent Mycobacterium tuberculosis Infection
Cited by: 27
Author(s): Lingna Lv, Cuidan Li, Xiuli Zhang, Nan Ding, Tian-Shu Cao, Xiaoyun Jia, Jinghui Wang, Liping Pan, Hongyan Jia, Zihui Li, Ju Zhang, Fei Chen, Zongde Zhang
Software Mentions: 1
Published: over 9 years ago

10.1038/s41396-020-0590-x

Anaerobic methane oxidation coupled to manganese reduction by members of the Methanoperedenaceae
Cited by: 186
Author(s): Andy O. Leu, Chen Cai, Simon Jon McIlroy, Gordon Southam, Victoria J. Orphan, Zhiguo Yuan, Shihu Hu, Gene W. Tyson
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13046-018-0923-z

Elevated Na/H exchanger 1 (SLC9A1) emerges as a marker for tumorigenesis and prognosis in gliomas
Cited by: 42
Author(s): Xiudong Guan, Lanxin Luo, Gulnaz Begum, Gary Kohanbash, Qingkun Song, Aparna Rao, Nduka Amankulor, Baoshan Sun, Dandan Sun, Wang Jia
Software Mentions: 1
Published: about 8 years ago

10.1186/s13046-019-1023-4

RETRACTED ARTICLE: MicroRNA-506 inhibits tumor growth and metastasis in nasopharyngeal carcinoma through the inactivation of the Wnt/β-catenin signaling pathway by down-regulating LHX2
Cited by: 69
Author(s): Tian Liang, Yanjun Zheng, Juan Wang, Jingyi Zhao, Daoke Yang, Zhangsuo Liu
Software Mentions: 1
Published: over 7 years ago

10.1186/s13046-019-1488-1

Human bone marrow mesenchymal stem cells-derived microRNA-205-containing exosomes impede the progression of prostate cancer through suppression of RHPN2
Cited by: 58
Author(s): Shuangjian Jiang, Chengqiang Mo, Shengjie Guo, Sian Liu, Bin Huang, Xiaopeng Mao
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2019.00528

Genomic and Physiological Traits of the Marine Bacterium Alcaligenes aquatilis QD168 Isolated From Quintero Bay, Central Chile, Reveal a Robust Adaptive Response to Environmental Stressors
Cited by: 23
Author(s): Roberto E. Durán, Valentina Méndez, Laura Rodríguez-Castro, Bárbara Barra-Sanhueza, Francisco Salvà‐Serra, Edward R. B. Moore, Eduardo Castro-Nallar, Michael Seeger
Software Mentions: 1
Published: over 7 years ago

10.3389/fonc.2021.677111

The RNA-Binding Protein NELFE Promotes Gastric Cancer Growth and Metastasis Through E2F2
Cited by: 5
Author(s): Changyu Chen, Qiang Zheng, Shubo Pan, Wenzheng Chen, Jianfeng Huang, Yi Cao, Yi Tu, Zhengrong Li, Changjun Yu, Zhigang Jie
Software Mentions: 1
Published: over 5 years ago

10.1534/g3.117.043331

Functional Profiling of Transcription Factor Genes inNeurospora crassa
Cited by: 46
Author(s): Alexander J. Carrillo, Patrick Schacht, Ilva E. Cabrera, Johnathon Blahut, Loren Prudhomme, Sarah Dietrich, Thomas Bekman, Jennifer Mei, Cristian Carrera, Vivian Chen, Isaiah Clark, Gerardo Fierro, Logan Ganzen, Jose Orellana, Shelby Wise, Kyeongcheol Yang, Hui Zhong, Katherine A. Borkovich
Software Mentions: 1
Published: about 9 years ago

10.1534/g3.117.1129

Differential Expression of miRNAs in the Respiratory Tree of the Sea Cucumber Apostichopus japonicus Under Hypoxia Stress
Cited by: 20
Author(s): Da Huo, Lina Sun, Xiaoni Li, Xiaoshang Ru, Shilin Liu, Libin Zhang, Lili Xing, Hongsheng Yang
Software Mentions: 1
Published: almost 9 years ago

10.1155/2019/7350414

Genome-Wide Identification, Characterization, and Expression Analysis of the Grapevine Superoxide Dismutase (SOD) Family
Cited by: 25
Author(s): Xin Hu, Chenyu Hao, Zong‐Ming Cheng, Yan Zhong
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2019.03055

Avian Pathogenic Escherichia coli (APEC) Strain-Dependent Immunomodulation of Respiratory Granulocytes and Mononuclear Phagocytes in CSF1R-Reporter Transgenic Chickens
Cited by: 33
Author(s): Andreas Alber, Katrina M. Morris, Karen Bryson, Kate Sutton, Melissa S. Monson, Cosmin Chintoan-Uta, Dominika Borowska, Susan J. Lamont, Catherine Schouler, Pete Kaiser, Mark P. Stevens, Lonneke Vervelde
Software Mentions: 1
Published: almost 7 years ago

10.1534/g3.120.401880

High-Throughput Identification of Nuclear Envelope Protein Interactions inSchizosaccharomyces pombeUsing an Arrayed Membrane Yeast-Two Hybrid Library
Cited by: 7
Author(s): Joseph M. Varberg, Jennifer M. Gardner, Scott McCroskey, Snehabala Saravanan, W. David Bradford, Sue L. Jaspersen
Software Mentions: 1
Published: almost 6 years ago

10.3390/genes7040012

De Novo Transcriptome Sequencing of Desert Herbaceous Achnatherum splendens (Achnatherum) Seedlings and Identification of Salt Tolerance Genes
Cited by: 19
Author(s): Jiangtao Liu, Yuelong Zhou, Changxin Luo, Yun Xiang, Lizhe An
Software Mentions: 1
Published: over 10 years ago

10.3390/genes7120111

Genome-Wide Survey Reveals Transcriptional Differences Underlying the Contrasting Trichome Phenotypes of Two Sister Desert Poplars
Cited by: 8
Author(s): Jianchao Ma, Xiaodong He, Xiaotao Bai, Zhimin Niu, Bingbing Duan, Ningning Chen, Xuemin Shao, Dongshi Wan
Software Mentions: 1
Published: almost 10 years ago

10.3390/genes10070527

Genome-Wide Identification and Expression Analysis of the Metacaspase Gene Family in Gossypium Species
Cited by: 9
Author(s): Senmiao Fan, Àiyīng Liú, Zhen Zhang, Xianyan Zou, Xiao Jiang, Jinyong Huang, Liqiang Fan, Zhibin Zhang, Xiǎoyīng Dèng, Qún Gě, Wànkuí Gǒng, Jùnwén Lǐ, Jǔwǔ Gōng, Yùzhēn Shí, Kang Lei, Shuya Zhang, Tingting Jia, Lipeng Zhang, Yǒulù Yuán, Hǎihóng Shāng
Software Mentions: 1
Published: over 7 years ago

10.3390/genes10090701

The Soybean Laccase Gene Family: Evolution and Possible Roles in Plant Defense and Stem Strength Selection
Cited by: 34
Author(s): Quan Wang, Guang Li, Kang‐Cheng Zheng, Xiaobin Zhu, Jingjing Ma, Dongmei Wang, Kun Tang, Xingxing Feng, Jiantian Leng, Hui Yu, Suxin Yang
Software Mentions: 1
Published: about 7 years ago

10.3389/fonc.2021.647269

Exploring the Significance of the Exon 4-Skipping Isoform of the ZNF217 Oncogene in Breast Cancer
Cited by: 2
Author(s): Aurélie Bellanger, Diep Tien Le, Julie A. Vendrell, Anne Wierinckx, Lőrinc Sándor Pongor, Jérôme Solassol, Joël Lachuer, Philippe Clézardin, Balázs Győrffy, Pascale A. Cohen
Software Mentions: 1
Published: over 5 years ago

10.3390/genes10110914

Genome-Wide Analysis of Basic Helix–Loop–Helix Superfamily Members Reveals Organization and Chilling-Responsive Patterns in Cabbage (Brassica oleracea var. capitata L.)
Cited by: 8
Author(s): Shibo Xi, Wei Zhang, Fangwei Yu, Shenyun Wang, Jianbin Li, Jun Tang, Zhigang Dai
Software Mentions: 1
Published: almost 7 years ago

10.1080/21505594.2020.1747799

Molecularly defined extraintestinal pathogenic Escherichia coli status predicts virulence in a murine sepsis model better than does virotype, individual virulence genes, or clonal subset among E. coli ST131 isolates
Cited by: 12
Author(s): Irene Merino, Stephen Porter, Brian Johnston, Connie Clabots, Paul Thuras, Patrícia Ruíz-Garbajosa, Rafael Cantón, James R. Johnson
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2020.01413

Rehmannia glutinosa Replant Issues: Root Exudate-Rhizobiome Interactions Clearly Influence Replant Success
Cited by: 14
Author(s): Zhang Bao, Leslie A. Weston, Mingjie Li, Xiaocheng Zhu, Paul A. Weston, Fan Feng, Bingyong Zhang, Liuji Zhang, Li Gu, Zhongyi Zhang
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers13143513

Expression of Retroelements in Cervical Cancer and Their Interplay with HPV Infection and Host Gene Expression
Cited by: 6
Author(s): Gislaine Curty, Albert N. Menezes, Ayslan Castro Brant, Miguel de Mulder Rougvie, Miguel Ângelo Martins Moreira, Marcelo A. Soares
Software Mentions: 1
Published: over 5 years ago

10.3390/genes11080863

Extensive Genetic Connectivity and Historical Persistence Are Features of Two Widespread Tree Species in the Ancient Pilbara Region of Western Australia
Cited by: 3
Author(s): Heidi Nistelberger, Rachel M. Binks, Stephen van Leeuwen, David Coates, Shelley McArthur, B. MacDonald, Margaret Hankinson, Margaret Byrne
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2019.01284

Dysregulated lncRNA-miRNA-mRNA Network Reveals Patient Survival-Associated Modules and RNA Binding Proteins in Invasive Breast Carcinoma
Cited by: 12
Author(s): Yu Dong, Yang Xiao, Qi Shi, Chunjie Jiang
Software Mentions: 1
Published: almost 7 years ago

10.3390/genes12040520

Actin-Related Protein 4 Interacts with PIE1 and Regulates Gene Expression in Arabidopsis
Cited by: 6
Author(s): Wen-Feng Nie, Jinyu Wang
Software Mentions: 1
Published: over 5 years ago

10.1590/1678-4685-GMB-2020-0054

A comparison of mRNA and circRNA expression between squamous cell carcinoma and adenocarcinoma of the lungs
Cited by: 4
Author(s): Min Yu, Yingxuan Tian, Min Wu, Jinglong Gao, Yuan Wang, Fuqiang Liu, Sen Sheng, Shufen Huo, Jun Bai
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41419-020-03348-2

BTF3 confers oncogenic activity in prostate cancer through transcriptional upregulation of Replication Factor C
Cited by: 9
Author(s): Yuan Zhang, Xiang Gao, Jingyan Yi, Xiaolin Sang, Zhihong Dai, Tao Zhou, Min Wang, Limeng Shen, Yaxun Jia, Xie Daqing, Hai‐Ling Margaret Cheng, Zhiyu Liu, Pixu Liu
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.55456

Phylogenetic variation in cortical layer II immature neuron reservoir of mammals
Cited by: 34
Author(s): Chiara La Rosa, Francesca Cavallo, Alessandra Pecora, Matteo Chincarini, Ugo Ala, Chris G. Faulkes, Juan Nácher, Bruno Cozzi, Chet C. Sherwood, Irmgard Amrein, Luca Bonfanti
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers12071811

Proliferative Classification of Intracranially Injected HER2-positive Breast Cancer Cell Lines
Cited by: 18
Author(s): Yoshihiro Kuroiwa, Jun Nakayama, Chihiro Adachi, Takafumi Inoue, Shinya Watanabe, Kentaro Semba
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2017.00976

Autoantibody Repertoire in APECED Patients Targets Two Distinct Subgroups of Proteins
Cited by: 38
Author(s): Dmytro Fishman, Kai Kisand, Christina Hertel, Mike Rothe, Anu Remm, Maire Pihlap, Priit Adler, Jaak Vilo, Aleksandr Peet, Antonella Meloni, Katarina Trebušak Podkrajšek, Tadej Battelino, Øyvind Bruserud, Anette S. B. Wolff, Eystein S. Husebye, Nicolas Kluger, Kai Krohn, Annamari Ranki, Hedi Peterson, Adrian Hayday, Pärt Peterson
Software Mentions: 1
Published: about 9 years ago

10.3389/fonc.2021.640910

Molecular and Clinical Characterization of UBE2S in Glioma as a Biomarker for Poor Prognosis and Resistance to Chemo-Radiotherapy
Cited by: 6
Author(s): Li Hu, Xingbo Cheng, Zev A. Binder, Zhibin Han, Yibo Yin, Donald M. O’Rourke, Sida Wang, Yumeng Feng, Changjiang Weng, Anhua Wu, Zhiguo Lin
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2019.01578

Identification of a Two-Gene (PML-EPB41) Signature With Independent Prognostic Value in Osteosarcoma
Cited by: 7
Author(s): Shengye Liu, Jiamei Liu, Xuechen Yu, Tao Shen, Qin Fu
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2020.623993

Circulating Myeloid Regulatory Cells: Promising Biomarkers in B-Cell Lymphomas
Cited by: 4
Author(s): Juliette Ferrant, Faustine Lhomme, Simon Le Gallou, Jonathan M. Irish, Mikaël Roussel
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.6455

Amorphous silica nanoparticles induce tumorigenesis via regulating ATP5H/SOD1-related oxidative stress, oxidative phosphorylation and EIF4G2/PABPC1-associated translational initiation
Cited by: 5
Author(s): Dongli Xie, Yang Zhou, Xiaogang Luo
Software Mentions: 1
Published: over 7 years ago

10.1155/2021/5568411

Integrated Analysis of the Roles of RNA Binding Proteins and Their Prognostic Value in Clear Cell Renal Cell Carcinoma
Cited by: 5
Author(s): Bowen Wang, Haoran Zhao, Shaobin Ni, Beichen Ding
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2021.647236

Autophagy-Related Long Non-coding RNA Is a Prognostic Indicator for Bladder Cancer
Cited by: 30
Author(s): Jiaming Wan, Cheng Guo, Hongpeng Fang, Zhongye Xu, Yongwei Hu, Yun Luo
Software Mentions: 1
Published: over 5 years ago

10.3390/plants8120615

Soil Mesofauna Respond to the Upward Expansion of Deyeuxia purpurea in the Alpine Tundra of the Changbai Mountains, China
Cited by: 2
Author(s): Tao Yan, Zhongqiang Wang, Chen Ma, Hongshi He, Jiawei Xu, Yinghua Jin, Haixia Wang, Xiaona Zheng
Software Mentions: 1
Published: almost 7 years ago

10.3390/plants9070855

Identification of the Volatile Compounds and Observation of the Glandular Trichomes in Opisthopappus taihangensis and Four Species of Chrysanthemum
Cited by: 11
Author(s): Yanhong Guo, Tengxun Zhang, Jian Zhong, Tingting Ba, Ting Xu, Qixiang Zhang, Ming Sun
Software Mentions: 1
Published: over 6 years ago

10.3390/plants9050586

Insights into the SAM Synthetase Gene Family and Its Roles in Tomato Seedlings under Abiotic Stresses and Hormone Treatments
Cited by: 39
Author(s): Parviz Heidari, Faezeeh Mazloomi, Thomas Nußbaumer, Gianni Barcaccia
Software Mentions: 1
Published: over 6 years ago

10.1093/gigascience/giz115

Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome
Cited by: 33
Author(s): Bo Song, Yue Song, Yuan Fang, Elizabeth Balyejusa Kizito, Sandra Ndagire Kamenya, Pamela Nahamya Kabod, Huan Liu, Samuel Muthemba, Robert Kariba, Joyce Njuguna, Solomon Maina, Francesca Stomeo, Appolinaire Djikeng, Prasad S. Hendre, Xiaoli Chen, Wenbin Chen, Xiuli Li, Wenjing Sun, Sibo Wang, Shifeng Cheng, Alice Muchugi, Ramni Jamnadass, Howard Shapiro, Allen Van Deynze, Huanming Yang, Jian Wang, Xun Xu, Damaris Achieng Odeny, Xin Liu
Software Mentions: 1
Published: about 7 years ago

10.3389/fimmu.2019.00372

Hemorrhagic Fever-Causing Arenaviruses: Lethal Pathogens and Potent Immune Suppressors
Cited by: 50
Author(s): Morgan Brisse, Hinh Ly
Software Mentions: 1
Published: over 7 years ago

10.4049/jimmunol.2001245

The Roles of Type 2 Cytotoxic T Cells in Inflammation, Tissue Remodeling, and Prostaglandin (PG) D2 Production Are Attenuated by PGD2 Receptor 2 Antagonism
Cited by: 7
Author(s): Wentao Chen, Jian Luo, Ye Yuan, Ryan Hoyle, Wei Liu, Rowie Borst, Shamsah Kazani, Eric A. Shikatani, Veit J. Erpenbeck, Ian D. Pavord, Paul Klenerman, David A. Sandham, Luzheng Xue
Software Mentions: 1
Published: over 5 years ago

10.1002/pld3.305

BHLH IRIDOID SYNTHESIS 3 is a member of a bHLH gene cluster regulating terpenoid indole alkaloid biosynthesis in Catharanthus roseus
Cited by: 18
Author(s): Sanjay K. Singh, Barunava Patra, Priyanka Paul, Yongliang Liu, Sitakanta Pattanaik, Ling Yuan
Software Mentions: 1
Published: almost 6 years ago

10.1155/2021/2649123

Identification of a Transcription Factor Signature That Can Predict Breast Cancer Survival
Cited by: 4
Author(s): Chi Fan, Jianshi Du, Liu Ning
Software Mentions: 1
Published: over 5 years ago

10.3390/ijerph17165751

The Response of Red Clover (Trifolium pratense L.) to Separate and Mixed Inoculations with Rhizobium leguminosarum and Azospirillum brasilense in Presence of Polycyclic Aromatic Hydrocarbons
Cited by: 6
Author(s): Karolina Furtak, Karolina Gawryjołek, Anna Gałązka, Jarosław Grządziel
Software Mentions: 1
Published: about 6 years ago

10.1186/s41065-021-00174-0

Development and analysis of long non-coding RNA-associated competing endogenous RNA network for osteosarcoma metastasis
Cited by: 2
Author(s): Yucheng Fu, Qi Liu, Qiyuan Bao, Junxiang Wen, Zhuochao Liu, Yuehao Hu, Guoyu He, Cheng Peng, Yanguang Xu, Weibin Zhang
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2018.00279

Population Genetic Diversity and Clustering Analysis for Chinese Dongxiang Group With 30 Autosomal InDel Loci Simultaneously Analyzed
Cited by: 16
Author(s): Bofeng Zhu, Qiong Lan, Yuxin Guo, Ting Xie, Yingying Fang, Xiaoye Jin, Wei Cui, Chong Chen, Yang Zhou, Yong Li
Software Mentions: 1
Published: about 8 years ago

10.1038/s41438-018-0027-0

The grapevine kinome: annotation, classification and expression patterns in developmental processes and stress responses
Cited by: 29
Author(s): Kaikai Zhu, Xiaolong Wang, Jinyi Liu, Jun Tang, Qunkang Cheng, Jay Chen, Zong‐Ming Cheng
Software Mentions: 1
Published: over 8 years ago

Projects: cran: pheatmap

Science Score: 75/100

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Papers Mentioning pheatmap 2,572