Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: pheatmap

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/pheatmap

Pretty Heatmaps
17 versions
Latest release: almost 6 years ago
77 dependent packages
37,681 downloads last month

Papers Mentioning pheatmap 2,572

10.3389/fphys.2018.00532
Effects of Acute Aerobic Exercise on Rats Serum Extracellular Vesicles Diameter, Concentration and Small RNAs Content
Cited by: 62
Author(s): Getúlio Pereira de Oliveira Júnior, William F. Porto, Cintia Palu, Lydyane Menezes Pereira, Bernardo A. Petriz, Jeeser Alves de Almeida, Juliane Cançado Viana, Nezio N. A. Filho, Octávio Luiz Franco, Rinaldo Wellerson Pereira
Software Mentions: 2
Published: over 6 years ago
10.3389/fphys.2021.672099
Genome-Wide Transcriptional Responses of Marine Nematode Litoditis marina to Hyposaline and Hypersaline Stresses
Cited by: 7
Author(s): Yusu Xie, Peng‐Chi Zhang, Liusuo Zhang
Software Mentions: 2
Published: over 3 years ago
10.3389/fphys.2019.01289
Transcription Analysis of the Stress and Immune Response Genes to Temperature Stress in Ostrinia furnacalis
Cited by: 26
Author(s): Kangkang Chen, Tai Tang, Qisheng Song, Zhenying Wang, Kanglai He, Xu Liu, Jiahui Song, Libao Wang, Ye Yang, Chao Feng
Software Mentions: 2
Published: about 5 years ago
10.1155/2020/8951907
Baicalin Represses C/EBP<i>β</i> via Its Antioxidative Effect in Parkinson’s Disease
Cited by: 24
Author(s): Kecheng Lei, Yijue Shen, Yijing He, Liwen Zhang, Jingxing Zhang, Weifang Tong, Yawei Xu, Lingjing Jin
Software Mentions: 2
Published: over 4 years ago
10.3389/fpls.2018.00264
Panax notoginseng Root Cell Death Caused by the Autotoxic Ginsenoside Rg1 Is Due to Over-Accumulation of ROS, as Revealed by Transcriptomic and Cellular Approaches
Cited by: 30
Author(s): Min Yang, Youcong Chuan, Changhong Guo, Jingjing Liao, Yanguo Xu, Xinyue Mei, Yixiang Liu, Huichuan Huang, Xiahong He, Shusheng Zhu
Software Mentions: 2
Published: almost 7 years ago
10.18632/aging.203318
MicroRNA-106b-5p inhibits growth and progression of lung adenocarcinoma cells by downregulating IGSF10
Cited by: 1
Author(s): Bowen Ling, Xin Liao, Qiang Tang, Guangbin Ye, Xiaoyun Bin, Jianchu Wang, Yaqin Pang, Guangzi Qi
Software Mentions: 2
Published: over 3 years ago
10.1186/s12863-021-00995-y
Genome-wide association studies of yield-related traits in high-latitude japonica rice
Cited by: 5
Author(s): Guomin Zhang, Rongsheng Wang, Junxun Ma, Hongjiang Gao, Lingwei Deng, Nanbo Wang, Yongli Wang, Jun Zhang, Kun Li, Wei Zhang, Fengchen Mu, Hui Liu, Ying Wang
Software Mentions: 2
Published: about 3 years ago
10.1002/mgg3.934
MtDNA polymorphism analyses in the Chinese Mongolian group: Efficiency evaluation and further matrilineal genetic structure exploration
Cited by: 11
Author(s): Qiong Lan, Ting Xie, Xiaoye Jin, Yingying Fang, Shuyan Mei, Guang Yang, Bofeng Zhu
Software Mentions: 2
Published: over 5 years ago
10.1016/j.jlr.2021.100096
PCSK9 is not secreted from mature differentiated intestinal cells
Cited by: 4
Author(s): François Marchand, Aurélie Thedrez, Damien Garçon, Audrey Ayer, Thibaud Sotin, Wieneke Dijk, Claire Blanchard, Gilliane Chadeuf, Lucie Arnaud, Mikaël Croyal, Laurianne Van Landeghem, Mélissa Touvron, Xavier Prieur, Anna Roubtsova, Nabil G. Seidah, Annik Prat, Bertrand Cariou, Cédric Le May
Software Mentions: 2
Published: almost 4 years ago
10.3389/fpls.2020.607893
Evolution of Tandem Repeats Is Mirroring Post-polyploid Cladogenesis in Heliophila (Brassicaceae)
Cited by: 11
Author(s): Mert Dogan, Milan Pouch, Terezie Mandáková, Petra Hloušková, Xi Guo, P.J.D. Winter, Zuzana Chumová, Adriaan van Niekerk, Klaus Mummenhoff, Ihsan A. Al‐Shehbaz, Ladislav Mucina, Martin A. Lysak
Software Mentions: 2
Published: almost 4 years ago
10.1186/s12902-019-0356-5
Genetic and epigenetic characteristics in ovarian tissues from polycystic ovary syndrome patients with irregular menstruation resemble those of ovarian cancer
Cited by: 24
Author(s): Jiao Jiao, Matthew Sagnelli, Bei Shi, Yuanyuan Fang, Zi-Qi Shen, Tianyu Tang, Bingying Dong, Da Li, Xiuxia Wang
Software Mentions: 2
Published: over 5 years ago
10.1002/mgg3.1235
A novel compound heterozygous missense mutation in <i>ASNS</i> broadens the spectrum of asparagine synthetase deficiency
Cited by: 5
Author(s): Chun Wang, Guiyuan He, Yakun Ge, Runjie Li, Zhenguo Li, Yongzhong Lin
Software Mentions: 2
Published: over 4 years ago
10.7554/eLife.40655
Identification and characterisation of hypomethylated DNA loci controlling quantitative resistance in Arabidopsis
Cited by: 64
Author(s): Leonardo Furci, Ritushree Jain, Joost H. M. Stassen, Oliver Berkowitz, James Whelan, David Roquis, Victoire Baillet, Vincent Colot, Frank Johannes, Jurriaan Ton
Software Mentions: 2
Published: almost 6 years ago
10.3390/molecules24010015
Genome-Wide Identification and Comparative Analysis for OPT Family Genes in Panax ginseng and Eleven Flowering Plants
Cited by: 9
Author(s): He Su, Yang Chu, Junqi Bai, Lu Gong, Juan Huang, Wen Xu, Jing Zhang, Xiaohui Qiu, Jiang Xu, Zhixing Huang
Software Mentions: 2
Published: almost 6 years ago
10.3389/fpls.2015.00882
Evolution, diversification, and expression of KNOX proteins in plants
Cited by: 37
Author(s): Jie Gao, Xue Yang, Wei Zhao, Tiange Lang, Tore Samuelsson
Software Mentions: 2
Published: about 9 years ago
10.7554/eLife.59795
Amino acid synthesis loss in parasitoid wasps and other hymenopterans
Cited by: 0
Author(s): Xinhai Ye, Shijiao Xiong, Ziwen Teng, Yi Yang, Jiale Wang, Kaili Yu, Huizi Wu, Mei Yang, Zhichao Yan, Sammy Cheng, Chuanlin Yin, Fang Wang, Hongwei Yao, Qi Fang, Qisheng Song, John H. Werren, Gōngyín Yè, Fēi Li
Software Mentions: 2
Published: about 4 years ago
10.3389/fpls.2021.711838
Plasmodiophora brassicae-Triggered Cell Enlargement and Loss of Cellular Integrity in Root Systems Are Mediated by Pectin Demethylation
Cited by: 8
Author(s): Karolina Stefanowicz, Monika Szymańska-Chargot, William Truman, Piotr Walerowski, Marcin Olszak, Adam Augustyniak, Arkadiusz Kosmala, Artur Zdunek, Robert Malinowski
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-019-47950-7
The large repertoire of conifer NLR resistance genes includes drought responsive and highly diversified RNLs
Cited by: 42
Author(s): Cyril Van Ghelder, Gérard Parent, Philippe Rigault, Julien Prunier, Isabelle Giguère, S. Caron, Juliana Stival Sena, Annie Deslauriers, Jean Bousquet, Daniel Esmenjaud, John J. MacKay
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-019-56367-1
Characterization of a five-microRNA signature as a prognostic biomarker for esophageal squamous cell carcinoma
Cited by: 13
Author(s): Jun Yu, Ming Zhu, Min Lv, Xiaoliu Wu, Xiaomei Zhang, Yuanying Zhang, Jintian Li, Qin Zhang
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-019-56290-5
Fungal and bacterial diversity of Svalbard subglacial ice
Cited by: 44
Author(s): Laura Perini, Cene Gostinčar, Nina Gunde‐Cimerman
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-019-57182-4
Metabolomic networks and pathways associated with feed efficiency and related-traits in Duroc and Landrace pigs
Cited by: 23
Author(s): Victor Adriano Okstoft Carmelo, Priyanka Banerjee, Wellison J. S. Diniz, Haja N. Kadarmideen
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-019-55013-0
Fibroblasts in urothelial bladder cancer define stroma phenotypes that are associated with clinical outcome
Cited by: 36
Author(s): Artur Mezheyeuski, Ulrika Segersten, Lina Leiss, Per‐Uno Malmström, Jiřı́ Hatina, Arne Östman, Carina Strell
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41419-018-0896-z
Somatic loss of WWOX is associated with TP53 perturbation in basal-like breast cancer
Cited by: 20
Author(s): Suhaib K. Abdeen, Uri Ben‐David, Aya Shweiki, Bella Maly, Rami I. Aqeilan
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-020-58163-8
Defining the Environmental Adaptations of Genus Devosia: Insights into its Expansive Short Peptide Transport System and Positively Selected Genes
Cited by: 46
Author(s): Chandni Talwar, Shekhar Nagar, Roshan Kumar, Joy Scaria, Rup Lal, Ram Krishan Negi
Software Mentions: 2
Published: almost 5 years ago
10.3389/fmicb.2018.01886
Pan-Genomic Study of Mycobacterium tuberculosis Reflecting the Primary/Secondary Genes, Generality/Individuality, and the Interconversion Through Copy Number Variations
Cited by: 29
Author(s): Tingting Yang, Jun Zhong, Ju Zhang, Cuidan Li, Xia Yu, Jingfa Xiao, Xiaoyun Jia, Nan Ding, Ge Ma, Guirong Wang, Liya Yue, Qian Liang, Yongjie Sheng, Yanhong Sun, Hairong Huang, Fei Chen
Software Mentions: 2
Published: over 6 years ago
10.1038/cddis.2017.398
Three-dimensional tumor cell growth stimulates autophagic flux and recapitulates chemotherapy resistance
Cited by: 40
Author(s): Corinna Bingel, E Koeneke, Johannes Ridinger, Annika Bittmann, Martin Sill, Heike Peterziel, Jagoda K. Wrobel, Inga Edeltraud Rettig, Till Milde, Uta Fernekorn, Frank Weise, Andreas Schober, Olaf Witt, Ina Oehme
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-020-62108-6
A genome-wide identification, characterization and functional analysis of salt-related long non-coding RNAs in non-model plant Pistacia vera L. using transcriptome high throughput sequencing
Cited by: 24
Author(s): Masoomeh Jannesar, Seyed Mahdi Seyedi, Maryam Moazzam Jazi, Vahid Niknam, Hassan Ebrahimzadeh, Christopher Botanga
Software Mentions: 2
Published: over 4 years ago
10.1038/s41419-021-03816-3
Proteomics of extracellular vesicles in plasma reveals the characteristics and residual traces of COVID-19 patients without underlying diseases after 3 months of recovery
Cited by: 20
Author(s): Kaimin Mao, Qi Tan, Yanling Ma, Sufei Wang, Hua Zhong, Yuhan Liao, Qi Huang, Wenjing Xiao, Hui Xia, Xingyi Tan, Ping Luo, Jing Xu, Danling Long, Yang Jin
Software Mentions: 2
Published: over 3 years ago
10.1186/s12967-021-02932-0
Inhibition of c-Fos expression attenuates IgE-mediated mast cell activation and allergic inflammation by counteracting an inhibitory AP1/Egr1/IL-4 axis
Cited by: 20
Author(s): Hui-Na Wang, Kunmei Ji, Lina Zhang, Chu-Chu Xie, Weiyong Li, Zhenghuan Zhao, Jiajie Chen
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-020-66132-4
Identification of key genes and modules in response to Cadmium stress in different rice varieties and stem nodes by weighted gene co-expression network analysis
Cited by: 27
Author(s): Qi Wang, Xianmin Zeng, Qiulai Song, Yu Sun, Yang Feng, Yongcai Lai
Software Mentions: 2
Published: over 4 years ago
10.3389/fmicb.2016.00889
Responses of Aquatic Bacteria to Terrestrial Runoff: Effects on Community Structure and Key Taxonomic Groups
Cited by: 12
Author(s): Huong T. Le, Cuong Tu Ho, Quan Hong Trinh, Anh Duc Trinh, Minh Thi Nguyet Luu, Hai S. Tran, Didier Orange, Jean‐Louis Janeau, A. Merroune, Emma Rochelle-Newall, Thomas Pommier
Software Mentions: 2
Published: over 8 years ago
10.1186/s13578-021-00665-7
Effects of low lead exposure on sperm quality and sperm DNA methylation in adult men
Cited by: 6
Author(s): Tiancheng Zhang, Yan Fei Ru, Bin Wu, Haiyan Dong, Chen Liang, Jing Zheng, Jianhui Li, Xin Wang, Zhikai Wang, Xuemei Wang, Xiaorong Shen, Jun Wu, Jun Qian, Maohua Miao, Yihua Gu, Huijuan Shi
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-020-67208-x
Vaccination of koalas during antibiotic treatment for Chlamydia-induced cystitis induces an improved antibody response to Chlamydia pecorum
Cited by: 7
Author(s): Samuel Phillips, Bonnie Chaban, Olusola Olagoke, Rosemary Booth, Michael Pyne, Peter Timms
Software Mentions: 2
Published: over 4 years ago
10.1038/s41419-019-2177-x
Vitamin D promotes the cisplatin sensitivity of oral squamous cell carcinoma by inhibiting LCN2-modulated NF-κB pathway activation through RPS3
Cited by: 46
Author(s): Zheng‐Ming Huang, Yin Zhang, Haigang Li, Yufeng Zhou, Qianyu Zhang, Rui Chen, Tingting Jin, Kaishun Hu, Shihao Li, Yan Wang, Wei‐liang Chen, Zhiquan Huang
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-020-68150-8
High expression of TCN1 is a negative prognostic biomarker and can predict neoadjuvant chemosensitivity of colon cancer
Cited by: 25
Author(s): Guangjie Liu, Yao-jie Wang, Meng Yue, Lianmei Zhao, Yongdong Guo, Yueping Liu, Hongjiang Yang, Fang Liu, Xue Zhang, Lianghui Zhi, Jing Zhao, Yan Sun, Guiying Wang
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-69978-w
Immune outcomes of Zika virus infection in nonhuman primates
Cited by: 5
Author(s): Blake Schouest, Marissa Fahlberg, Elizabeth A. Scheef, Matthew J. Ward, Kyra Headrick, Dawn Szeltner, Robert V Blair, Margaret H. Gilbert, Lara A. Doyle-Meyers, Victoria W. Danner, Myrna C. Bonaldo, Dawn M. Wesson, Antonito T. Panganiban, Nicholas J. Maness
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-69418-9
iPSC-derived progenitor stromal cells provide new insights into aberrant musculoskeletal development and resistance to cancer in down syndrome
Cited by: 4
Author(s): Yekaterina Galat, Mariana Perepitchka, Irina Elcheva, Stephen Iannaccone, Philip M. Iannaccone, Vasiliy Galat
Software Mentions: 2
Published: over 4 years ago
10.3389/fmicb.2018.00399
Unique Microbial Diversity and Metabolic Pathway Features of Fermented Vegetables From Hainan, China
Cited by: 36
Author(s): Qingyun Peng, Shuaiming Jiang, Jieling Chen, Chenchen Ma, Dongxue Huo, Yiming Shao, Jiachao Zhang
Software Mentions: 2
Published: over 6 years ago
10.3389/fmicb.2021.653998
Characterization and Comparison of Bacterial Communities of an Invasive and Two Native Caribbean Seagrass Species Sheds Light on the Possible Influence of the Microbiome on Invasive Mechanisms
Cited by: 7
Author(s): Tânia Aires, Tamara M. Stuij, Gerard Muyzer, Ester A. Serrão, Aschwin H. Engelen
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-020-72792-z
Strain-specific strategies of 2′-fucosyllactose, 3-fucosyllactose, and difucosyllactose assimilation by Bifidobacterium longum subsp. infantis Bi-26 and ATCC 15697
Cited by: 30
Author(s): Bryan Zabel, Svetlana Gerdes, Kara Evans, Derek Nedveck, Suzanne Koch Singles, Barbara Volk, Charles R. Budinoff
Software Mentions: 2
Published: about 4 years ago
10.3389/fmicb.2019.03012
Combined Application of High-Throughput Sequencing and Metabolomics Reveals Metabolically Active Microorganisms During Panxian Ham Processing
Cited by: 32
Author(s): Yu Mu, Wei Su, Yingchun Mu, Li Jiang
Software Mentions: 2
Published: almost 5 years ago
10.3389/fmicb.2021.653283
Illumina Sequencing and Metabolomics Analysis Reveal Thiamine Modulation of Ruminal Microbiota and Metabolome Characteristics in Goats Fed a High-Concentrate Diet
Cited by: 15
Author(s): Yuxiang Ma, Chao Wang, Hao Zhang, Lihuai Yu, Dong Li, Daoqing Gong, Junhu Yao, Hongrong Wang
Software Mentions: 2
Published: over 3 years ago
10.3389/fmicb.2017.02630
The Expressed MicroRNA—mRNA Interactions of Toxoplasma gondii
Cited by: 9
Author(s): İlhan E. Acar, Müşerref Duygu Saçar Demirci, Uwe Groß, Jens Allmer
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-020-73709-6
Multi-gene metabolic engineering of tomato plants results in increased fruit yield up to 23%
Cited by: 12
Author(s): José G. Vallarino, Szymon Kubiszewski-Jakubiak, Stephanie Ruf, Margit Rößner, Stefan Timm, Hermann Bauwe, Fernando Carrari, Doris Rentsch, Ralph Bock, Lee J. Sweetlove, Alisdair R. Fernie
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-75179-2
Genomic analysis of European bovine Staphylococcus aureus from clinical versus subclinical mastitis
Cited by: 41
Author(s): Jurriaan Hoekstra, Aldert Zomer, Victor P.M.G. Rutten, Lindert Benedictus, Arjan Stegeman, Mirlin Spaninks, Torben Werner Bennedsgaard, Andrew G. Biggs, Sarne De Vliegher, Demetrio Herrera Mateo, R. Huber‐Schlenstedt, J. Katholm, P. Kovács, Volker Krömker, Guillaume Lequeux, P. Moroni, Luciana Pinho, S. Smulski, K. Supré, J.M. Swinkels, Mark A. Holmes, T.J.G.M. Lam, Gerrit Koop
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-75536-1
Identification of serum cytokine clusters associated with outcomes in ovarian clear cell carcinoma
Cited by: 3
Author(s): Akira Yabuno, Hirokazu Matsushita, Tetsutaro Hamano, Tuan Zea Tan, Daisuke Shintani, Nao Fujieda, David S.P. Tan, Ruby Yun‐Ju Huang, Keiichi Fujiwara, Kazuhiro Kakimi, Kosei Hasegawa
Software Mentions: 2
Published: about 4 years ago
10.18632/oncotarget.27712
Down syndrome iPSC model: endothelial perspective on tumor development
Cited by: 2
Author(s): Mariana Perepitchka, Yekaterina Galat, Igor P. Beletsky, Philip M. Iannaccone, Vasiliy Galat
Software Mentions: 2
Published: about 4 years ago
10.1186/s13578-020-00487-z
Significant transcriptomic changes are associated with differentiation of bone marrow-derived mesenchymal stem cells into neural progenitor-like cells in the presence of bFGF and EGF
Cited by: 19
Author(s): Amir Ali Khan, Tee Jong Huat, Abdullah Al Mutery, Ahmed T. El‐Serafi, Hassen Hadj Kacem, Sallam Hasan Abdallah, Muhammed Faruque Reza, Jafri Malin Abdullah, Hasnan Jaafar
Software Mentions: 2
Published: about 4 years ago
10.3389/fmed.2021.713312
Topical Application of the PI3Kβ-Selective Small Molecule Inhibitor TGX-221 Is an Effective Treatment Option for Experimental Epidermolysis Bullosa Acquisita
Cited by: 4
Author(s): Hannah Zillikens, Anika Kasprick, Colin Osterloh, Natalie Gross, Michael Radziewitz, Cindy Hass, Veronika Hartmann, Martina Behnen-Härer, Nancy Ernst, Katharina Boch, Gestur Vidarsson, Remco Visser, Tamás Laskay, Xinhua Yu, Frank Petersen, Ralf J. Ludwig, Katja Bieber
Software Mentions: 2
Published: about 3 years ago
10.1038/s41598-020-76887-5
Streptomyces sp. strain TOR3209: a rhizosphere bacterium promoting growth of tomato by affecting the rhizosphere microbial community
Cited by: 31
Author(s): Dong Hu, Shuhong Li, Ying Li, Jie Peng, Xiaoyan Wei, Jia Ma, Cuimian Zhang, Jun Nan, Entao Wang, Zhanwu Wang
Software Mentions: 2
Published: about 4 years ago
10.3389/fimmu.2021.625244
Neutrophils Encompass a Regulatory Subset Suppressing T Cells in Apparently Healthy Cattle and Mice
Cited by: 10
Author(s): Marion Rambault, Émilie Doz-Deblauwe, Yves Le Vern, Florence Carreras, Patricia Cunha, Pierre Germon, Pascal Rainard, Nathalie Winter, Aude Rémot
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-020-78507-8
Age related extracellular matrix and interstitial cell phenotype in pulmonary valves
Cited by: 8
Author(s): Shaohua Wu, Vikas Kumar, Xiao Peng, Mitchell Kuss, Jung Yul Lim, Chittibabu Guda, Jonathan T. Butcher, Bin Duan
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-020-79313-y
Transcriptional profiles of human islet and exocrine endothelial cells in subjects with or without impaired glucose metabolism
Cited by: 4
Author(s): Ann‐Beth Jonsson, A. Hedin, Malin Müller, Oskar Skog, Olle Korsgren
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-020-79643-x
Individual-oocyte transcriptomic analysis shows that genotoxic chemotherapy depletes human primordial follicle reserve in vivo by triggering proapoptotic pathways without growth activation
Cited by: 24
Author(s): Shiny Titus, Katarzyna Szymanska, B Musul, Volkan Turan, Enes Taylan, Rolando García-Milián, Shilpi S Mehta, Kutluk Oktay
Software Mentions: 2
Published: almost 4 years ago
10.3389/fimmu.2020.600012
IL4I1 Accelerates the Expansion of Effector CD8+ T Cells at the Expense of Memory Precursors by Increasing the Threshold of T-Cell Activation
Cited by: 10
Author(s): Marie-Line Puiffe, Aurélie Dupont, Nouhoum Sako, Jérôme Gatineau, José L. Cohen, Denis Mestivier, Agnès Lebon, Armelle Prévost-Blondel, Flavia Castellano, Valérie Molinier‐Frenkel
Software Mentions: 2
Published: about 4 years ago
10.3390/ijms18050925
Genome-Wide Analyses of MicroRNA Profiling in Interleukin-27 Treated Monocyte-Derived Human Dendritic Cells Using Deep Sequencing: A Pilot Study
Cited by: 10
Author(s): Xiaojun Hu, Qian Chen, Bharatwaj Sowrirajan, Marjorie Bosche, Tomozumi Imamichi, Brad T. Sherman
Software Mentions: 2
Published: over 7 years ago
10.3390/ijms19072052
Genome-Wide Characterization and Expression Analyses of Pleurotus ostreatus MYB Transcription Factors during Developmental Stages and under Heat Stress Based on de novo Sequenced Genome
Cited by: 26
Author(s): Lining Wang, Wei Gao, Xiangli Wu, Ming Zhao, Jian Qu, Chenyang Huang, Jinxia Zhang
Software Mentions: 2
Published: over 6 years ago
10.3390/ijms19103262
Structural and Comparative Analysis of the Complete Chloroplast Genome of Pyrus hopeiensis—“Wild Plants with a Tiny Population”—and Three Other Pyrus Species
Cited by: 26
Author(s): Yongtan Li, Jun Zhang, Longfei Li, Lijuan Gao, Jintao Xu, Minsheng Yang
Software Mentions: 2
Published: about 6 years ago
10.3390/ijms19113525
Comparative Transcriptome Analysis Provides Novel Insight into Morphologic and Metabolic Changes in the Fat Body during Silkworm Metamorphosis
Cited by: 15
Author(s): Jian Peng, Zheng Li, Yan Yang, Peng Wang, Xuan Zhou, Tujing Zhao, Mengpei Guo, Meng Meng, Tianlei Zhang, Wenliang Qian, Qingyou Xia, Daojun Cheng, Ping Zhao
Software Mentions: 2
Published: about 6 years ago
10.3390/ijms19123772
Comparison of the Abundance and Community Structure of N-Cycling Bacteria in Paddy Rhizosphere Soil under Different Rice Cultivation Patterns
Cited by: 23
Author(s): Xiaomei Yi, Jing Yuan, Yupeng Zhu, Xiaojian Yi, Qi Zhao, Kai Fang, Linkui Cao
Software Mentions: 2
Published: about 6 years ago
10.3390/ijms20030661
GeneLab Database Analyses Suggest Long-Term Impact of Space Radiation on the Cardiovascular System by the Activation of FYN Through Reactive Oxygen Species
Cited by: 22
Author(s): Afshin Beheshti, J. Tyson McDonald, Jack Miller, Peter Grabham, Sylvain V. Costes
Software Mentions: 2
Published: almost 6 years ago
10.3390/ijms20061519
Wnt/β-Catenin Pathway Is Involved in Cadmium-Induced Inhibition of Osteoblast Differentiation of Bone Marrow Mesenchymal Stem Cells
Cited by: 28
Author(s): Lu Wu, Qiujing Wei, Yingjian Lv, Junchao Xue, Bo Zhang, Qiang Sun, Tian Xiao, Rui Huang, Ping Wang, Xiangyu Dai, Haibo Xia, Jun-Jie Liu, Xingfen Yang, Qizhan Liu
Software Mentions: 2
Published: over 5 years ago
10.3390/ijms20102491
Deep Insight into the Transcriptome of the Single Silk Gland of Bombyx mori
Cited by: 10
Author(s): Run Shi, Sanyuan Ma, Ting He, Jian Peng, Tong Zhang, Xiaoxu Chen, Xiaogang Wang, Jiasong Chang, Qingyou Xia, Ping Zhao
Software Mentions: 2
Published: over 5 years ago
10.3390/ijms20194864
Genome-Wide Identification, Evolution, and Expression Analysis of RING Finger Gene Family in Solanum lycopersicum
Cited by: 15
Author(s): Liang Yang, Mingjun Miao, Hongjun Lyu, Xue Cao, Ju Li, Li YueJian, Zhi Li, Wei Chang
Software Mentions: 2
Published: about 5 years ago
10.3389/fimmu.2021.637659
Activation of Toll-Like Receptor 7 Signaling Pathway in Primary Sjögren's Syndrome-Associated Thrombocytopenia
Cited by: 10
Author(s): Shuo Zhang, Jingge Qu, Li Wang, Mengtao Li, Dong Xu, Yan Zhao, Fengchun Zhang, Xiaofeng Zeng
Software Mentions: 2
Published: over 3 years ago
10.3389/fimmu.2021.700009
Comparative Proteomic Analysis of Polarized Human THP-1 and Mouse RAW264.7 Macrophages
Cited by: 39
Author(s): Pengfei Li, Hao Zou, Jingyu Wu, Chen Ma, Yintai Xu, Jun Li, Rongxia Lan, Bojing Zhu, Pengyu Ren, Daidi Fan, Shisheng Sun
Software Mentions: 2
Published: over 3 years ago
10.3390/ijms21030866
Reduced miR-26b Expression in Megakaryocytes and Platelets Contributes to Elevated Level of Platelet Activation Status in Sepsis
Cited by: 27
Author(s): Bernadett Szilágyi, Zsolt Fejes, Szilárd Póliska, Marianna Pócsi, Zsolt Czimmerer, Andreas Patsalos, Ferenc Fenyvesi, Ágnes Rusznyák, György M. Nagy, György Kerekes, Mariann Berhés, István Szűcs, Satya P. Kunapuli, János Kappelmayer, Béla Nagy
Software Mentions: 2
Published: almost 5 years ago
10.3390/ijms21031070
Local and Systemic Humoral Response to Autologous Lineage-Negative Cells Intrathecal Administration in ALS Patients
Cited by: 10
Author(s): Bartłomiej Baumert, Anna Sobuś, Monika Gołąb-Janowska, Zofia Ulańczyk, Edyta Paczkowska, Karolina Łuczkowska, Alicja Zawiślak, Sławomir Milczarek, Bogumiła Osękowska, Agnieszka Meller, Karolina Machowska-Sempruch, Agnieszka Wełnicka, Krzysztof Safranow, Przemysław Nowacki, Bogusław Machaliński
Software Mentions: 2
Published: almost 5 years ago
10.3389/fimmu.2021.639572
3D Bioprinting Allows the Establishment of Long-Term 3D Culture Model for Chronic Lymphocytic Leukemia Cells
Cited by: 19
Author(s): Francesca Sbrana, Riccardo Pinos, Federica Barbaglio, Davide Ribezzi, Fiorella Scagnoli, Lydia Scarfò, Itedale Namro Redwan, Héctor Martínez, Silvia Farè, Paolo Ghia, Cristina Scielzo
Software Mentions: 2
Published: over 3 years ago
10.3389/fimmu.2018.01040
Bacteroides fragilis Protects Against Antibiotic-Associated Diarrhea in Rats by Modulating Intestinal Defenses
Cited by: 65
Author(s): Wendi Zhang, Bo Zhu, Jiahui Xu, Yangyang Liu, Enqi Qiu, Zhijun Li, Zhengchao Li, Yan He, Hongwei Zhou, Yang Bai, Fachao Zhi
Software Mentions: 2
Published: over 6 years ago
10.3389/fimmu.2018.02458
Absence of Regulatory T Cells Causes Phenotypic and Functional Switch in Murine Peritoneal Macrophages
Cited by: 15
Author(s): Jelena Škuljec, Adan Chari Jirmo, Anika Habener, Steven R. Talbot, Refik Pul, Ruth Grychtol, Malik Aydin, Christoph Kleinschnitz, Christine Happle, Gesine Hansen
Software Mentions: 2
Published: about 6 years ago
10.3389/fimmu.2020.590459
A Network-Based Analysis Reveals the Mechanism Underlying Vitamin D in Suppressing Cytokine Storm and Virus in SARS-CoV-2 Infection
Cited by: 41
Author(s): Firoz Ahmed
Software Mentions: 2
Published: almost 4 years ago
10.3389/fimmu.2021.708770
Transcriptional Profiling and Functional Analysis of N1/N2 Neutrophils Reveal an Immunomodulatory Effect of S100A9-Blockade on the Pro-Inflammatory N1 Subpopulation
Cited by: 21
Author(s): Andreea C. Mihaila, Letitia Ciortan, Razvan D. Macarie, Mihaela Vadana, Sergiu Cecoltan, Mihai Bogdan Preda, Ariana Hudiță, Ana-Maria Gan, Gabriel Jakobsson, Monica Pirvulescu, E. Magda Barbu, Șerban Mihai Bălănescu, Maya Simionescu, Alexandru Schiopu, Elena Butoi
Software Mentions: 2
Published: over 3 years ago
10.3389/fimmu.2021.623280
Thymic Epithelial Cell-Derived IL-15 and IL-15 Receptor α Chain Foster Local Environment for Type 1 Innate Like T Cell Development
Cited by: 5
Author(s): Huishan Tao, Lei Li, Nan‐Shih Liao, Kimberly S. Schluns, Shirley Luckhart, John W. Sleasman, Xiao‐Ping Zhong
Software Mentions: 2
Published: almost 4 years ago
10.3389/fimmu.2020.614343
Use of the Tissue Common Rejection Module Score in Kidney Transplant as an Objective Measure of Allograft Inflammation
Cited by: 5
Author(s): Arya Zarinsefat, José Manuel Arreola Guerra, Tara K. Sigdel, Izabella Damm, Reuben D. Sarwal, Chitranon Chan-on, Gyula Szabó, Jorge L. Aguilar-Frasco, Xicohténcatl Ixtlapale-Carmona, Carlos Salinas-Ramos, Leonardo Ramirez-Martinez, C B. Ramirez, Mario Vilatobá, Luis Eduardo Morales Buenrostro, Josefina Alberú, Minnie M. Sarwal
Software Mentions: 2
Published: almost 4 years ago
10.1155/2020/8880004
Identification of Featured Metabolism-Related Genes in Patients with Acute Myocardial Infarction
Cited by: 5
Author(s): Hang Xie, Enfa Zha, Yushun Zhang
Software Mentions: 2
Published: about 4 years ago
10.1186/s13018-020-01655-0
MicroRNA-1202 plays a vital role in osteoarthritis via KCNQ1OT1 has-miR-1202-ETS1 regulatory pathway
Cited by: 9
Author(s): Changzeng Liu, Jianming Gao, Guangyan Su, Yu‐Tao Xiang, Wei Le
Software Mentions: 2
Published: over 4 years ago
10.1038/s42003-021-01901-z
Inside-out chicken enteroids with leukocyte component as a model to study host–pathogen interactions
Cited by: 38
Author(s): Tessa Nash, Katrina M. Morris, Neil A. Mabbott, Lonneke Vervelde
Software Mentions: 2
Published: over 3 years ago
10.1038/s42003-019-0716-8
NHC-gold compounds mediate immune suppression through induction of AHR-TGFβ1 signalling in vitro and in scurfy mice
Cited by: 14
Author(s): Xinlai Cheng, Stefanie Haeberle, Iart Luca Shytaj, Rodrigo A. Gama-Brambila, Jannick Theobald, Shahrouz Ghafoory, Jessica Wölker, Uttara Basu, Claudia Schmidt, Annika Timm, Katerina Taškova, Andrea S. Bauer, Jörg D. Hoheisel, Nikolaos Tsopoulidis, Oliver T. Fackler, Andrea Savarino, Miguel A. Andrade‐Navarro, Ingo Ott, Marina Lušić, Eva Hadaschik, Stefan Wölfl
Software Mentions: 2
Published: almost 5 years ago
10.1038/s42003-020-1082-2
A smart polymer for sequence-selective binding, pulldown, and release of DNA targets
Cited by: 9
Author(s): Elisha Krieg, Krishna Gupta, Andreas Dahl, Mathias Lesche, Susanne Boye, Albena Lederer, William M. Shih
Software Mentions: 2
Published: over 4 years ago
10.1038/s42003-020-0964-7
Omics-wide quantitative B-cell infiltration analyses identify GPR18 for human cancer prognosis with superiority over CD20
Cited by: 13
Author(s): Yuchen Liu, Li Wang, Kwok Wai Lo, Vivian Wai Yan Lui
Software Mentions: 2
Published: over 4 years ago
10.1038/s42003-021-02676-z
High-throughput single-cell transcriptomics reveals the female germline differentiation trajectory in Arabidopsis thaliana
Cited by: 14
Author(s): Zongliu Hou, Qing Liu, Man Zhang, Lihua Zhao, Xingyue Jin, Liping Liu, Zhenxia Su, Hanyang Cai, Yuan Qin
Software Mentions: 2
Published: about 3 years ago
10.1186/s13148-020-00940-3
Identification of the subtypes of gastric cancer based on DNA methylation and the prediction of prognosis
Cited by: 10
Author(s): Tengda Li, Xin Chen, Mingli Gu, Anmei Deng, Cheng Qing
Software Mentions: 2
Published: about 4 years ago
10.3390/ijms22094491
Comparative Transcriptome Analysis Identified Candidate Genes for Late Leaf Spot Resistance and Cause of Defoliation in Groundnut
Cited by: 11
Author(s): Sunil S. Gangurde, Spurthi N. Nayak, P. K. Joshi, Shilp Purohit, H. Sudini, Annapurna Chitikineni, Yanbin Hong, Bao‐Zhu Guo, Xiaoping Chen, Manish K. Pandey, Rajeev K. Varshney
Software Mentions: 2
Published: over 3 years ago
10.3390/cells10020251
Osteoarthritic Subchondral Bone Release Exosomes That Promote Cartilage Degeneration
Cited by: 26
Author(s): Xiaoxin Wu, Ross Crawford, Yin Xiao, Xinzhan Mao, Indira Prasadam
Software Mentions: 2
Published: almost 4 years ago
10.3390/ijms22115908
Smooth Muscle Specific Ablation of CXCL12 in Mice Downregulates CXCR7 Associated with Defective Coronary Arteries and Cardiac Hypertrophy
Cited by: 7
Author(s): Santhosh Kumar Ghadge, Moritz Messner, H Seiringer, Thomas Maurer, Simon Staggl, Tanja Zeller, Christian Müller, Daniela Börnigen, Wolfgang J. Weninger, Stefan H. Geyer, Sieghart Sopper, Anne Krogsdam, Gerhard Pölzl, Axel Bauer, Marc-Michael Zaruba
Software Mentions: 2
Published: over 3 years ago
10.3390/ijms22147508
4-Acetyl-Antroquinonol B Improves the Sensitization of Cetuximab on Both Kras Mutant and Wild Type Colorectal Cancer by Modulating the Expression of Ras/Raf/miR-193a-3p Signaling Axis
Cited by: 7
Author(s): Yi Cheng Chu, Tung Yao Tsai, Vijesh Kumar Yadav, Li Deng, Chun Chih Huang, Yew Min Tzeng, Chi Tai Yeh, Ming‐Yao Chen
Software Mentions: 2
Published: over 3 years ago
10.3390/ijms22157876
Males and Females Have Distinct Molecular Events in the Articular Cartilage during Knee Osteoarthritis
Cited by: 5
Author(s): Chenshuang Li, Zhong Zheng
Software Mentions: 2
Published: over 3 years ago
10.3390/ijms22168815
A New Glycosyltransferase Enzyme from Family 91, UGT91P3, Is Responsible for the Final Glucosylation Step of Crocins in Saffron (Crocus sativus L.)
Cited by: 13
Author(s): Alberto José López-Jiménez, Sarah Frusciante, Enrique Niza, Oussama Ahrazem, Ángela Rubio-Moraga, Gianfranco Diretto, Lourdes Gómez-Gómez
Software Mentions: 2
Published: over 3 years ago
10.3390/ijms22179553
A Transcriptomic Meta-Analysis Shows Lipid Metabolism Dysregulation as an Early Pathological Mechanism in the Spinal Cord of SOD1 Mice
Cited by: 15
Author(s): Luis C. Fernández-Beltrán, Juan Miguel Godoy-Corchuelo, Maria Losa-Fontangordo, Debbie Williams, Jorge Matías‐Guiu, Silvia Corrochano
Software Mentions: 2
Published: over 3 years ago
10.3390/cells10061410
Regulatory miRNA–mRNA Networks in Parkinson’s Disease
Cited by: 10
Author(s): Bruno Lopes Santos‐Lobato, Amanda Ferreira Vidal, Ândrea Ribeiro-dos-Santos
Software Mentions: 2
Published: over 3 years ago
10.1021/acs.jproteome.1c00378
Evaluation of Spin Columns for Human Plasma Depletion to Facilitate MS-Based Proteomics Analysis of Plasma
Cited by: 21
Author(s): Xiaofang Cao, AnnSofi Sandberg, J.E. Araújo, Filip Cvetkovski, Erik Berglund, Lars E. Eriksson, Maria Pernemalm
Software Mentions: 2
Published: over 3 years ago
10.3390/cells9051078
Characterization of Endoplasmic Reticulum (ER) in Human Pluripotent Stem Cells Revealed Increased Susceptibility to Cell Death upon ER Stress
Cited by: 9
Author(s): Tae Won Ha, Ji Hun Jeong, HyeonSeok Shin, Hyun Kyu Kim, Jeong Suk Im, Byung Hoo Song, Jacob Hanna, Jae Sang Oh, Dong Hun Woo, Jaeseok Han, Man Ryul Lee
Software Mentions: 2
Published: over 4 years ago
10.1016/j.celrep.2019.12.078
Probiotic Bacillus subtilis Protects against α-Synuclein Aggregation in C. elegans
Cited by: 98
Author(s): María Eugenia Goya, Feng Xue, Cristina Sampedro-Torres-Quevedo, Sofia Arnaouteli, Lourdes Riquelme-Dominguez, Andrés Romanowski, Jack Brydon, Kathryn L. Ball, Nicola R. Stanley‐Wall, Maria Doitsidou
Software Mentions: 2
Published: almost 5 years ago
10.1016/j.celrep.2021.109230
Integrin intra-heterodimer affinity inversely correlates with integrin activatability
Cited by: 11
Author(s): Guangyu Sun, Emilie Guillon, Scott A. Holley
Software Mentions: 2
Published: over 3 years ago
10.1111/cpr.12634
Inferring immune‐associated signatures based on a co‐expression network in Guillain‐Barré syndrome
Cited by: 1
Author(s): Xiaoming Zhang, Huixue Zhang, Zhaojun Liu, Ruijuan Guan, Jianjian Wang, Xiaotong Kong, Lixia Chen, Chunrui Bo, Jie Li, Ming Bai, Xiaoyu Lu, Jia Shen, Lihua Wang, Mian Guo
Software Mentions: 2
Published: over 5 years ago
10.1515/biol-2021-0052
Potential prognostic markers and significant lncRNA–mRNA co-expression pairs in laryngeal squamous cell carcinoma
Cited by: 4
Author(s): Junguo Wang, Dingding Liu, Yajun Gu, Han Zhou, Hui Li, Xiaohui Shen, Xiaoyun Qian
Software Mentions: 2
Published: almost 4 years ago
10.1186/s12974-020-01834-0
Expression profiling of spinal cord dorsal horn in a rat model of complex regional pain syndrome type-I uncovers potential mechanisms mediating pain and neuroinflammation responses
Cited by: 25
Author(s): Ruixiang Chen, Chengyu Yin, Quanteng Hu, Boyu Liu, Yan Tai, Xiaoli Zheng, Yuanyuan Li, Jianqiao Fang
Software Mentions: 2
Published: over 4 years ago
10.1186/s12974-021-02098-y
Transcriptome profiling of long noncoding RNAs and mRNAs in spinal cord of a rat model of paclitaxel-induced peripheral neuropathy identifies potential mechanisms mediating neuroinflammation and pain
Cited by: 30
Author(s): Yuanyuan Li, Chengyu Yin, Boyu Liu, Huimin Nie, Jie Wang, Danyi Zeng, Ruixiang Chen, Xiaofen He, Jiaqi Fang, Junying Du, Yi Liang, Yongliang Jiang, Jianqiao Fang
Software Mentions: 2
Published: almost 4 years ago
10.1186/s12974-021-02144-9
High-salt diet downregulates TREM2 expression and blunts efferocytosis of macrophages after acute ischemic stroke
Cited by: 16
Author(s): Mengyan Hu, Yinyao Lin, Xuejiao Men, Shisi Wang, Xiaobo Sun, Qiang Zhu, Danli Lu, Sanxin Liu, Bingjun Zhang, Wei Cai, Zhengqi Lu
Software Mentions: 2
Published: over 3 years ago