cran: pheatmap | Projects | Ecosyste.ms: Papers

10.1074/jbc.RA120.015755

Genomic determinants implicated in the glucocorticoid-mediated induction of KLF9 in pulmonary epithelial cells
Cited by: 9
Author(s): Mahmoud Mostafa, Akanksha Bansal, Aubrey N. Michi, Sarah K. Sasse, David Proud, Anthony N. Gerber, Robert Newton
Software Mentions: 2
Published: over 5 years ago

10.1186/s40709-020-00116-3

A potential prognostic model based on miRNA expression profile in The Cancer Genome Atlas for bladder cancer patients
Cited by: 3
Author(s): Yan Liu, Dong Zhu, Hong Xing, Yi Hou, Yan Sun
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-017-03820-8

Tracing the epidemic history of HIV-1 CRF01_AE clusters using near-complete genome sequences
Cited by: 31
Author(s): Xingguang Li, Haizhou Liu, Lu Liu, Yi Feng, Marcia L. Kalish, Simon Y. W. Ho, Yiming Shao
Software Mentions: 2
Published: about 9 years ago

10.1186/s13048-020-00760-2

miR-362-3p acts as a tumor suppressor by targeting SERBP1 in ovarian cancer
Cited by: 6
Author(s): Shujun Cao, Na Li, Xihong Liao
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-10436-5

Microbial communities in peatlands along a chronosequence on the Sanjiang Plain, China
Cited by: 16
Author(s): Xue Zhou, Zhenqing Zhang, Lei Tian, Xiujun Li, Chunjie Tian
Software Mentions: 2
Published: about 9 years ago

10.1186/s12864-018-4901-9

LTR-retrotransposon transcriptome modulation in response to endotoxin-induced stress in PBMCs
Cited by: 22
Author(s): Marine Mommert, Olivier Tabone, Guy Oriol, Elisabeth Cerrato, Audrey Guichard, Magali Naville, Paola Fournier, Jean‐Nicolas Volff, Alexandre Pachot, Guillaume Monneret, Fabienne Venet, Karen Brengel‐Pesce, Julien Textoris, François Mallet
Software Mentions: 2
Published: about 8 years ago

10.1186/s12864-019-6144-9

Genome-wide identification, expression profiles and regulatory network of MAPK cascade gene family in barley
Cited by: 42
Author(s): Licao Cui, Guang Yang, Jiali Yan, Yan Pan, Xiaojun Nie
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-017-18773-1

Identification and validation of an 18-gene signature highly-predictive of bladder cancer metastasis
Cited by: 8
Author(s): Beihe Wang, Fangning Wan, Haoyue Sheng, Yiping Zhu, Guohai Shi, Ye Zhang, Bo Dai, Yijun Shen, Yao Zhu, Dingwei Ye
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-20935-8

Impact of mid-season sulphur deficiency on wheat nitrogen metabolism and biosynthesis of grain protein
Cited by: 39
Author(s): Zitong Yu, Angéla Juhász, Shahidul Islam, Dean Diepeveen, Jingjuan Zhang, Penghao Wang, Wujun Ma
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-22753-4

Allele-specific expression in a family quartet with autism reveals mono-to-biallelic switch and novel transcriptional processes of autism susceptibility genes
Cited by: 13
Author(s): Chun‐Yen Lin, Kai Wei Chang, Chia Yi Lin, Jia Ying Wu, Hilary Coon, Pei Hsin Huang, Hong Nerng Ho, Schahram Akbarian, Susan Shur‐Fen Gau, Hsien-Sung Huang
Software Mentions: 2
Published: over 8 years ago

10.1186/s12864-021-07459-8

Identification of the molecular regulation of differences in lipid deposition in dedifferentiated preadipocytes from different chicken tissues
Cited by: 10
Author(s): Zheng Ma, Na Luo, Lu Liu, Huanxian Cui, Jing Li, Hai Xiang, Hao Kang, Hua Li, Guiping Zhao
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-018-23189-6

The role of cuticular hydrocarbons in mate recognition in Drosophila suzukii
Cited by: 50
Author(s): Yannick Snellings, Beatriz Herrera, Bruna Wildemann, Melissa Beelen, Liesbeth Zwarts, Tom Wenseleers, Patrick Callaerts
Software Mentions: 2
Published: over 8 years ago

10.1186/s12864-021-07442-3

Genomic insight into diet adaptation in the biological control agent Cryptolaemus montrouzieri
Cited by: 5
Author(s): Hao‐Sen Li, Yu‐Hao Huang, Meilan Chen, Renbin Zhan, Bo-Yuan Qiu, Patrick De Clercq, Gerald Heckel
Software Mentions: 2
Published: over 5 years ago

10.18632/oncotarget.13139

FGFR3, as a receptor tyrosine kinase, is associated with differentiated biological functions and improved survival of glioma patients
Cited by: 10
Author(s): Zheng Wang, Chuanbao Zhang, Lihua Sun, Jingshan Liang, Xing Liu, Guanzhang Li, Kun Yao, Wei Zhang, Tao Jiang
Software Mentions: 2
Published: almost 10 years ago

10.1038/s41598-018-26718-5

Transcriptome analysis of the reef-building octocoral, Heliopora coerulea
Cited by: 16
Author(s): Christine Guzman, Chuya Shinzato, Tsai-Ming Lu, Cecilia Conaco
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-27479-x

Damage-associated molecular pattern recognition is required for induction of retinal neuroprotective pathways in a sex-dependent manner
Cited by: 6
Author(s): Marcus Hooper, Jiangang Wang, Robert Browning, John D. Ash
Software Mentions: 2
Published: about 8 years ago

10.18632/oncotarget.15596

Non-small cell lung cancer associated microRNA expression signature: integrated bioinformatics analysis, validation and clinical significance
Cited by: 56
Author(s): Chunyu Li, Yunhong Yin, Xiao Liu, Xuejiao Xi, Weixiao Xue, Yi-Qing Qu
Software Mentions: 2
Published: over 9 years ago

10.18632/oncotarget.17295

Transcriptional response profiles of paired tumor-normal samples offer novel perspectives in pan-cancer analysis
Cited by: 22
Author(s): Shuofeng Hu, Hanyu Yuan, Zongcheng Li, Jian Zhang, Jiaqi Wu, Yaowen Chen, Qiang Shi, Wu Ren, Ningsheng Shao, Xiaomin Ying
Software Mentions: 2
Published: over 9 years ago

10.1186/1471-2164-14-S5-S8

Gene expression analysis of induced pluripotent stem cells from aneuploid chromosomal syndromes
Cited by: 29
Author(s): Ruosi Zhang, Lili Hao, Lingping Wang, Meili Chen, Wen Li, Rujiao Li, Jun Yu, Jingfa Xiao, Jiayan Wu
Software Mentions: 2
Published: almost 13 years ago

10.1038/s41598-018-31432-3

Metabolome and molecular basis for carbohydrate increase and nitrate reduction in burley tobacco seedlings by glycerol through upregulating carbon and nitrogen metabolism
Cited by: 8
Author(s): Yafei Li, Dong Chil Chang, Huijuan Yang, Jing Wang, Hongzhi Shi
Software Mentions: 2
Published: about 8 years ago

10.1186/s12864-019-5506-7

Transcriptome sequencing analysis of maize embryonic callus during early redifferentiation
Cited by: 17
Author(s): Zhang Xiao-ling, Yanli Wang, Yuanyuan Yan, Hua Peng, Yun Long, Yinchao Zhang, Jiang Zhou, Peng Liu, Chaoying Zou, Huanwei Peng, Guangtang Pan, Yaou Shen
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-34614-1

Genome-wide Identification of Jatropha curcas MAPK, MAPKK, and MAPKKK Gene Families and Their Expression Profile Under Cold Stress
Cited by: 17
Author(s): Haibo Wang, Ming Gong, Junyun Guo, Hu Xiu, Yong Gao, Chao Liu, Dong-Qin Dai, Lizhou Tang
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-018-37565-9

Environmental filtering of bacterial functional diversity along an aridity gradient
Cited by: 14
Author(s): Huacan Song, Yu Shi, Teng Yang, Haiyan Chu, Jin‐Sheng He, Hyoki Kim, Piotr G. Jabłoński, Jonathan M. Adams
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-38186-y

Human macrophages survive and adopt activated genotypes in living zebrafish
Cited by: 18
Author(s): Colin D. Paul, Alexus Devine, Kevin Bishop, Qing Xu, William J. Wulftange, Hannah A. Burr, Kathryn M. Daly, Chaunte Lewis, Daniel S. Green, Jack R. Staunton, Swati Choksi, Zheng-gang Liu, Kandice Tanner
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-43025-9

Fungal Elevational Rapoport pattern from a High Mountain in Japan
Cited by: 29
Author(s): Matthew Chidozie Ogwu, Koichi Takahashi, Ke Dong, Huacan Song, Itumeleng Moroenyane, Bruce Waldman, Jonathan M. Adams
Software Mentions: 2
Published: over 7 years ago

10.1186/s12864-019-5853-4

What determines host specificity in hyperspecialized plant parasitic nematodes?
Cited by: 9
Author(s): Michaël Sabeh, Étienne Lord, Éric Grenier, Marc St‐Arnaud, Benjamin Mimee
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-47332-z

Roux-Y Gastric Bypass and Sleeve Gastrectomy directly change gut microbiota composition independent of surgery type
Cited by: 53
Author(s): Fernanda L. Paganelli, Misha D. P. Luyer, C. Marijn Hazelbag, Hae‐Won Uh, Malbert R. C. Rogers, Danielle Adriaans, Roos-Marijn Berbers, Antoni P. A. Hendrickx, Marco C. Viveen, James Groot, Marc J. M. Bonten, Ad C. Fluit, Rob J. L. Willems, Helen L. Leavis
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-47950-7

The large repertoire of conifer NLR resistance genes includes drought responsive and highly diversified RNLs
Cited by: 42
Author(s): Cyril Van Ghelder, Gérard Parent, Philippe Rigault, Julien Prunier, Isabelle Giguère, S. Caron, Juliana Stival Sena, Annie Deslauriers, Jean Bousquet, Daniel Esmenjaud, John J. MacKay
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-48904-9

Enhanced dechlorination and biodegradation of 2-chloroaniline by a 2-aminoanthraquinone-graphene oxide composite under anaerobic conditions
Cited by: 5
Author(s): Hong Lü, Tiantian Zhang, Yang Zhou, Jiti Zhou, Jing Wang, Xiaolei Wang
Software Mentions: 2
Published: about 7 years ago

10.1186/s12864-020-07058-z

Skeletal muscle and cardiac transcriptomics of a regionally endothermic fish, the Pacific bluefin tuna, Thunnus orientalis
Cited by: 2
Author(s): Adam Ciezarek, Luke D. Gardner, Vincent Savolainen, Barbara A. Block
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12864-019-5600-x

Genomic sequence analysis reveals diversity of Australian Xanthomonas species associated with bacterial leaf spot of tomato, capsicum and chilli
Cited by: 14
Author(s): R. Roach, Rachel Mann, Cherie Gambley, Toni A. Chapman, R. G. Shivas, Brendan Rodoni
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-55869-2

Multi-omics analysis of multiple missions to space reveal a theme of lipid dysregulation in mouse liver
Cited by: 43
Author(s): Afshin Beheshti, Kaushik Chakravarty, Homer Fogle, Hossein Fazelinia, Willian A. da Silveira, Valery Boyko, San-Huei Lai Polo, Amanda Saravia-Butler, Gary Hardiman, Deanne Taylor, Jonathan M. Galazka, Sylvain V. Costes
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-56367-1

Characterization of a five-microRNA signature as a prognostic biomarker for esophageal squamous cell carcinoma
Cited by: 13
Author(s): Jun Yu, Ming Zhu, Min Lv, Xiaoliu Wu, Xiaomei Zhang, Yuanying Zhang, Jintian Li, Qin Zhang
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-56290-5

Fungal and bacterial diversity of Svalbard subglacial ice
Cited by: 44
Author(s): Laura Perini, Cene Gostinčar, Nina Gunde‐Cimerman
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-017-4366-2

Comparative transcriptome and proteome profiling of two Citrus sinensis cultivars during fruit development and ripening
Cited by: 38
Author(s): Jianhui Wang, Jianjun Li, Keling Chen, Hongwen Li, Jian He, Bin Guan, Li He
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-019-57182-4

Metabolomic networks and pathways associated with feed efficiency and related-traits in Duroc and Landrace pigs
Cited by: 23
Author(s): Victor Adriano Okstoft Carmelo, Priyanka Banerjee, Wellison J. S. Diniz, Haja N. Kadarmideen
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-55013-0

Fibroblasts in urothelial bladder cancer define stroma phenotypes that are associated with clinical outcome
Cited by: 36
Author(s): Artur Mezheyeuski, Ulrika Segersten, Lina Leiss, Per‐Uno Malmström, Jiřı́ Hatina, Arne Östman, Carina Strell
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-58163-8

Defining the Environmental Adaptations of Genus Devosia: Insights into its Expansive Short Peptide Transport System and Positively Selected Genes
Cited by: 46
Author(s): Chandni Talwar, Shekhar Nagar, Roshan Kumar, Joy Scaria, Rup Lal, Ram Krishan Negi
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-020-6639-4

Endogenous circadian time genes expressions in the liver of mice under constant darkness
Cited by: 23
Author(s): Huan Li, Shiyao Zhang, Wenxiang Zhang, Siyu Chen, Anjara Rabearivony, Yujie Shi, Jie Liu, Christopher J. Corton, Chang Liu
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-62108-6

A genome-wide identification, characterization and functional analysis of salt-related long non-coding RNAs in non-model plant Pistacia vera L. using transcriptome high throughput sequencing
Cited by: 24
Author(s): Masoomeh Jannesar, Seyed Mahdi Seyedi, Maryam Moazzam Jazi, Vahid Niknam, Hassan Ebrahimzadeh, Christopher Botanga
Software Mentions: 2
Published: over 6 years ago

10.18632/oncotarget.20627

The downregulation of putative anticancer target BORIS/CTCFL in an addicted myeloid cancer cell line modulates the expression of multiple protein coding and ncRNA genes
Cited by: 2
Author(s): Evgeny Teplyakov, Qiongfang Wu, Jian Liu, Elena M. Pugacheva, Dmitry Loukinov, Abdelhalim Boukaba, Victor Lobanenkov, Alexander Strunnikov
Software Mentions: 2
Published: about 9 years ago

10.1186/s12864-021-07838-1

Gonadal transcriptomes associated with sex phenotypes provide potential male and female candidate genes of sex determination or early differentiation in Crassostrea gigas, a sequential hermaphrodite mollusc
Cited by: 12
Author(s): Coralie Broquard, Saowaros Suwansa‐ard, Mélanie Lepoittevin, Lionel Degrémont, Jean‐Baptiste Lamy, Benjamín Morga, Abigail Elizur, Anne‐Sophie Martinez
Software Mentions: 2
Published: about 5 years ago

10.1186/s12864-018-4511-6

Evolutionary and expression analyses of soybean basic Leucine zipper transcription factor family
Cited by: 65
Author(s): Man Zhang, Qing Liu, Hongbo Shi, Mingliang Guo, Mengnan Chai, Qing-Yu He, Mei Yan, Du Cao, Lihua Zhao, Hanyang Cai, Yuan Qin
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-020-66132-4

Identification of key genes and modules in response to Cadmium stress in different rice varieties and stem nodes by weighted gene co-expression network analysis
Cited by: 27
Author(s): Qi Wang, Xianmin Zeng, Qiulai Song, Yu Sun, Yang Feng, Yongcai Lai
Software Mentions: 2
Published: about 6 years ago

10.1186/s12864-015-1988-0

Rapid evolutionary divergence of Gossypium barbadense and G. hirsutum mitochondrial genomes
Cited by: 40
Author(s): Mingyong Tang, Zhiwen Chen, Corrinne E. Grover, Yumei Wang, Shuangshuang Li, Guozheng Liu, Zhiying Ma, Jonathan F. Wendel, Jinping Hua
Software Mentions: 2
Published: almost 11 years ago

10.1038/s41598-020-67208-x

Vaccination of koalas during antibiotic treatment for Chlamydia-induced cystitis induces an improved antibody response to Chlamydia pecorum
Cited by: 7
Author(s): Samuel Phillips, Bonnie Chaban, Olusola Olagoke, Rosemary Booth, Michael Pyne, Peter Timms
Software Mentions: 2
Published: about 6 years ago

10.1186/s12864-018-4531-2

Comparative genomic analysis reveals the evolution and environmental adaptation strategies of vibrios
Cited by: 56
Author(s): Heyu Lin, Min Yu, Xiaolei Wang, Xiaohua Zhang
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-020-68150-8

High expression of TCN1 is a negative prognostic biomarker and can predict neoadjuvant chemosensitivity of colon cancer
Cited by: 25
Author(s): Guangjie Liu, Yao-jie Wang, Meng Yue, Lianmei Zhao, Yongdong Guo, Yueping Liu, Hongjiang Yang, Fang Liu, Xue Zhang, Lianghui Zhi, Jing Zhao, Yan Sun, Guiying Wang
Software Mentions: 2
Published: about 6 years ago

10.1186/s12864-021-07644-9

Transcriptional profile of oil palm pathogen, Ganoderma boninense, reveals activation of lignin degradation machinery and possible evasion of host immune response
Cited by: 10
Author(s): Braham Dhillon, Richard Hamelin, Jeffrey A. Rollins
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-021-07547-9

Transcriptomic analysis of the poultry red mite, Dermanyssus gallinae, across all stages of the lifecycle
Cited by: 8
Author(s): Kathryn Bartley, Wan Chen, Richard I. Lloyd Mills, Francesca Nunn, Daniel D. Price, Stéphane Rombauts, Yves Van de Peer, Lise Roy, Alasdair J. Nisbet, Stewart T. G. Burgess
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-69978-w

Immune outcomes of Zika virus infection in nonhuman primates
Cited by: 5
Author(s): Blake Schouest, Marissa Fahlberg, Elizabeth A. Scheef, Matthew J. Ward, Kyra Headrick, Dawn Szeltner, Robert V Blair, Margaret H. Gilbert, Lara A. Doyle-Meyers, Victoria W. Danner, Myrna C. Bonaldo, Dawn M. Wesson, Antonito T. Panganiban, Nicholas J. Maness
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-69418-9

iPSC-derived progenitor stromal cells provide new insights into aberrant musculoskeletal development and resistance to cancer in down syndrome
Cited by: 4
Author(s): Yekaterina Galat, Mariana Perepitchka, Irina Elcheva, Stephen Iannaccone, Philip M. Iannaccone, Vasiliy Galat
Software Mentions: 2
Published: about 6 years ago

10.1186/s12864-019-6184-1

Microevolution within ST11 group Clostridioides difficile isolates through mobile genetic elements based on complete genome sequencing
Cited by: 4
Author(s): Yuan Wu, Lin Yang, Wenge Li, Wen Zhu Zhang, Zheng Jie Liu, Jinxing Lu
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-020-72792-z

Strain-specific strategies of 2′-fucosyllactose, 3-fucosyllactose, and difucosyllactose assimilation by Bifidobacterium longum subsp. infantis Bi-26 and ATCC 15697
Cited by: 30
Author(s): Bryan Zabel, Svetlana Gerdes, Kara Evans, Derek Nedveck, Suzanne Koch Singles, Barbara Volk, Charles R. Budinoff
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-73709-6

Multi-gene metabolic engineering of tomato plants results in increased fruit yield up to 23%
Cited by: 12
Author(s): José G. Vallarino, Szymon Kubiszewski-Jakubiak, Stephanie Ruf, Margit Rößner, Stefan Timm, Hermann Bauwe, Fernando Carrari, Doris Rentsch, Ralph Bock, Lee J. Sweetlove, Alisdair R. Fernie
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-75179-2

Genomic analysis of European bovine Staphylococcus aureus from clinical versus subclinical mastitis
Cited by: 41
Author(s): Jurriaan Hoekstra, Aldert Zomer, Victor P.M.G. Rutten, Lindert Benedictus, Arjan Stegeman, Mirlin Spaninks, Torben Werner Bennedsgaard, Andrew G. Biggs, Sarne De Vliegher, Demetrio Herrera Mateo, R. Huber‐Schlenstedt, J. Katholm, P. Kovács, Volker Krömker, Guillaume Lequeux, P. Moroni, Luciana Pinho, S. Smulski, K. Supré, J.M. Swinkels, Mark A. Holmes, T.J.G.M. Lam, Gerrit Koop
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-75536-1

Identification of serum cytokine clusters associated with outcomes in ovarian clear cell carcinoma
Cited by: 3
Author(s): Akira Yabuno, Hirokazu Matsushita, Tetsutaro Hamano, Tuan Zea Tan, Daisuke Shintani, Nao Fujieda, David S.P. Tan, Ruby Yun‐Ju Huang, Keiichi Fujiwara, Kazuhiro Kakimi, Kosei Hasegawa
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-76887-5

Streptomyces sp. strain TOR3209: a rhizosphere bacterium promoting growth of tomato by affecting the rhizosphere microbial community
Cited by: 31
Author(s): Dong Hu, Shuhong Li, Ying Li, Jie Peng, Xiaoyan Wei, Jia Ma, Cuimian Zhang, Jun Nan, Entao Wang, Zhanwu Wang
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-78507-8

Age related extracellular matrix and interstitial cell phenotype in pulmonary valves
Cited by: 8
Author(s): Shaohua Wu, Vikas Kumar, Xiao Peng, Mitchell Kuss, Jung Yul Lim, Chittibabu Guda, Jonathan T. Butcher, Bin Duan
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-79313-y

Transcriptional profiles of human islet and exocrine endothelial cells in subjects with or without impaired glucose metabolism
Cited by: 4
Author(s): Ann‐Beth Jonsson, A. Hedin, Malin Müller, Oskar Skog, Olle Korsgren
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-79643-x

Individual-oocyte transcriptomic analysis shows that genotoxic chemotherapy depletes human primordial follicle reserve in vivo by triggering proapoptotic pathways without growth activation
Cited by: 24
Author(s): Shiny Titus, Katarzyna Szymanska, B Musul, Volkan Turan, Enes Taylan, Rolando García-Milián, Shilpi S Mehta, Kutluk Oktay
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-80264-7

Integrated mRNA and miRNA expression profile analysis of female and male gonads in Hyriopsis cumingii
Cited by: 10
Author(s): Yayu Wang, Shenghua Duan, Guiling Wang, Jiale Li
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-016-2778-z

Multiple adaptive routes of Salmonella enterica Typhimurium to biocide and antibiotic exposure
Cited by: 36
Author(s): Tânia Curião, Emmanuela Marchi, Denis Grandgirard, Ricardo León‐Sampedro, Carlo Viti, Stephen L. Leib, Fernando Baquero, Marco R. Oggioni, José Luis Martínez, Teresa M. Coque
Software Mentions: 2
Published: about 10 years ago

10.1038/s41598-021-82709-z

Structural changes in the oral microbiome of the adolescent patients with moderate or severe dental fluorosis
Cited by: 7
Author(s): Qian Wang, Xuelan Chen, Huan Hu, Xiaoyuan Wei, Xiaofan Wang, Zhiqing Peng, Rui Ma, Qian Zhao, Jiangchao Zhao, Jianguo Liu, Feilong Deng
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-82252-x

Inhibition of androgen/AR signaling inhibits diethylnitrosamine (DEN) induced tumour initiation and remodels liver immune cell networks
Cited by: 8
Author(s): Timothy H. Helms, Riley Mullins, Jennifer M. Thomas‐Ahner, Samuel K. Kulp, Moray J. Campbell, Fabienne Lucas, Nathan W. Schmidt, D. Lemoine, Surafel Getaneh, Zhiliang Xie, Mitch A. Phelps, Steven K. Clinton, Christopher C. Coss
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-83752-6

Allelopathic effect of Artemisia argyi on the germination and growth of various weeds
Cited by: 29
Author(s): Jinxin Li, Le Chen, Qiaohuan Chen, Yuhuan Miao, Peng Zheng, Bisheng Huang, Lan-Ping Guo, Dahui Liu, Hongzhi Du
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-84177-x

Effects of different proportions of soft rock additions on organic carbon pool and bacterial community structure of sandy soil
Cited by: 2
Author(s): Wanying Li, Zhen Guo, Juan Li, Jichang Han
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-85246-x

A highly expressed mRNA signature for predicting survival in patients with stage I/II non-small-cell lung cancer after operation
Cited by: 6
Author(s): Nan Ma, Lu Si, Meiling Yang, Meihua Li, He Zhou
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-021-07808-7

Population differentiated copy number variation of Bos taurus, Bos indicus and their African hybrids
Cited by: 11
Author(s): Jung Eun Jang, Kwondo Kim, Young Ho Lee, Heebal Kim
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-86259-2

Meta-QTL and ortho-MQTL analyses identified genomic regions controlling rice yield, yield-related traits and root architecture under water deficit conditions
Cited by: 35
Author(s): Bahman Khahani, Elahe Tavakol, Vahid Shariati, Laura Rossini
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-86970-0

Biosyntheses characterization of alkaloids and flavonoids in Sophora flavescens by combining metabolome and transcriptome
Cited by: 9
Author(s): Guangfei Wei, Yongzhong Chen, Xiaotong Guo, Jianhe Wei, Lixin Dong, Shilin Chen
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-87048-7

Genome-wide identification and analysis of long non-coding RNAs involved in fatty acid biosynthesis in young soybean pods
Cited by: 9
Author(s): Ben Ma, Aijing Zhang, Qiuzhu Zhao, Zeyuan Li, Abraham Lamboro, Haobo He, Yue Li, Suqi Jiao, Shuyan Guan, Siyan Liu, Dan Yao, Jun Zhang
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-87542-y

The application of ozonated water rearranges the Vitis vinifera L. leaf and berry transcriptomes eliciting defence and antioxidant responses
Cited by: 8
Author(s): Ana Campayo, Stefania Savoi, Charles Romieu, Alberto José López-Jiménez, Kortes Serrano de la Hoz, M. Rosario Salinas, Laurent Torregrosa, Gonzalo L. Alonso
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-019-5725-y

Expanding dynamics of the virulence-related gene variations in the toxigenic Vibrio cholerae serogroup O1
Cited by: 8
Author(s): Zhenpeng Li, Bo Pang, Duochun Wang, Jie Li, Jialiang Xu, Yujie Fang, Xin Lü, Biao Kan
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-021-89713-3

Heme cytotoxicity is the consequence of endoplasmic reticulum stress in atherosclerotic plaque progression
Cited by: 2
Author(s): Dávid Pethő, Zoltán Hendrik, Annamária Nagy, Lívia Beke, Andreas Patsalos, László Nagy, Szilárd Póliska, Gábor Méhes, Csaba Tóth, László Potor, John W. Eaton, Harry S. Jacob, György Balla, József Balla, Tamás Gáll
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-91934-5

Differential methylation of G-protein coupled receptor signaling genes in gastrointestinal neuroendocrine tumors
Cited by: 5
Author(s): Seyoun Byun, Kajsa E. Affolter, Angela K. Snow, Karen Curtin, Austin R. Cannon, Lisa Cannon-Albright, Ramya Thota, Deborah W. Neklason
Software Mentions: 2
Published: about 5 years ago

10.1186/s12864-020-07152-2

Genome-wide study of pineapple (Ananas comosus L.) bHLH transcription factors indicates that cryptochrome-interacting bHLH2 (AcCIB2) participates in flowering time regulation and abiotic stress response
Cited by: 19
Author(s): Mohammad Aslam, Bello Hassan Jakada, Beenish Fakher, Joseph G. Greaves, Xiaoping Niu, Zhenxia Su, Yan Cheng, Shijiang Cao, Xiaomei Wang, Yuan Qin
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-91742-x

Gender specific airway gene expression in COPD sub-phenotypes supports a role of mitochondria and of different types of leukocytes
Cited by: 7
Author(s): Anna Esteve‐Codina, Thomas P. Hofer, Dorothe Burggraf, Marion Heiß-Neumann, Wolfgang Gesierich, Anne Boland, Robert Olaso, Marie-Thérèse Bihoreau, Jean‐François Deleuze, Winfried Moeller, Otmar Schmid, María Soler Artigas, Kathrin Renner, Jens M. Hohlfeld, Tobias Welte, Thomas Fuehner, Lukas Jerrentrup, Andreas Rembert Koczulla, Timm Greulich, Antje Prasse, Joachim Müller–Quernheim, Sumit Gupta, Christopher Brightling, Deepak Subramanian, David Parr, Umme Kolsum, Vandana Gupta, Imre Barta, Balázs Döme, J. Strausz, Mariarita Stendardo, Marco Piattella, Pierà Boschetto, Damian Korzybski, Dorota Górecka, Adam Nowiński, Marc Dabad, Marcos Fernández-Callejo, David Endesfelder, Wolfgang zu Castell, Pieter S. Hiemstra, Per Venge, Elfriede Noeßner, Thasso Griebel, Simon Heath, Dave Singh, Marta Gut, Loems Ziegler-Heitbrock
Software Mentions: 2
Published: about 5 years ago

10.18632/oncotarget.27712

Down syndrome iPSC model: endothelial perspective on tumor development
Cited by: 2
Author(s): Mariana Perepitchka, Yekaterina Galat, Igor P. Beletsky, Philip M. Iannaccone, Vasiliy Galat
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-92701-2

Integrated network analysis identifying potential novel drug candidates and targets for Parkinson's disease
Cited by: 8
Author(s): Pusheng Quan, Kai Wang, Yan Shi, Shirong Wen, Chengqun Wei, Xinyu Zhang, Jingwei Cao, Lifen Yao
Software Mentions: 2
Published: about 5 years ago

10.1186/s12864-021-07539-9

Whole-genome analysis of probiotic product isolates reveals the presence of genes related to antimicrobial resistance, virulence factors, and toxic metabolites, posing potential health risks
Cited by: 26
Author(s): Ying Wang, Qian Liang, Boxun Lu, Hong Shen, Shuyan Liu, Yue Shi, Sebastian Leptihn, Hong Li, Wei Jin, Chengzhi Liu, Hailong Xiao, Xiaowei Zheng, Chao Liu, Huan Chen
Software Mentions: 2
Published: over 5 years ago

10.1186/s12863-021-00995-y

Genome-wide association studies of yield-related traits in high-latitude japonica rice
Cited by: 5
Author(s): Guomin Zhang, Rongsheng Wang, Junxun Ma, Hongjiang Gao, Lingwei Deng, Nanbo Wang, Yongli Wang, Jun Zhang, Kun Li, Wei Zhang, Fengchen Mu, Hui Liu, Ying Wang
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12902-019-0356-5

Genetic and epigenetic characteristics in ovarian tissues from polycystic ovary syndrome patients with irregular menstruation resemble those of ovarian cancer
Cited by: 24
Author(s): Jiao Jiao, Matthew Sagnelli, Bei Shi, Yuanyuan Fang, Zi-Qi Shen, Tianyu Tang, Bingying Dong, Da Li, Xiuxia Wang
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-021-94287-1

Silicon mitigates nutritional stress in quinoa (Chenopodium quinoa Willd.)
Cited by: 19
Author(s): Ana Paula de Assis Sales, Cid Naudi Silva Campos, Jonás Pereira de Souza, Dalila Lopes da Silva, Kamilla Silva Oliveira, Larissa Pereira Ribeiro Teodoro, Paulo Eduardo Teodoro
Software Mentions: 2
Published: about 5 years ago

10.1186/s12885-020-6515-2

Comprehensive profiling of circular RNA expressions reveals potential diagnostic and prognostic biomarkers in multiple myeloma
Cited by: 44
Author(s): Fan Zhou, Dongjiao Wang, Wei Wei, Haimin Chen, Haotian Shi, Nina Zhou, Lixia Wu, Rong Peng
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-021-98184-5

The complete genome of 2,6-dichlorobenzamide (BAM) degrader Aminobacter sp. MSH1 suggests a polyploid chromosome, phylogenetic reassignment, and functions of plasmids
Cited by: 5
Author(s): Tue Kjærgaard Nielsen, Benjamin Horemans, Cédric Lood, Jeroen T’Syen, Vera van Noort, Rob Lavigne, Lea Ellegaard-Jensen, Ole Hylling, Jens Aamand, Dirk Springael, Lars Hestbjerg Hansen
Software Mentions: 2
Published: almost 5 years ago

10.1126/scitranslmed.abf8654

High titers and low fucosylation of early human anti–SARS-CoV-2 IgG promote inflammation by alveolar macrophages
Cited by: 145
Author(s): Willianne Hoepel, Hung Jen Chen, Chiara E. Geyer, Sona Allahverdiyeva, Xue D. Manz, Steven W. de Taeye, Jurjan Aman, Lynn Mes, Maurice Steenhuis, Guillermo R. Griffith, Peter I. Bonta, Philip J.M. Brouwer, Tom G. Caniels, Karlijn van der Straten, Korneliusz Golebski, René E. Jonkers, Mads Delbo Larsen, Federica Linty, Jan Nouta, Cindy P. A. A. van Roomen, Frank E.H.P. van Baarle, Cornelis M. van Drunen, Gertjan Wolbink, Alexander P.J. Vlaar, Godelieve J. de Bree, Rogier W. Sanders, Lisa Willemsen, Annette E. Neele, Diederik van de Beek, Theo Rispens, Manfred Wuhrer, Harm Jan Bogaard, Marit J. van Gils, Gestur Vidarsson, Menno P.J. de Winther, Jeroen den Dunnen
Software Mentions: 2
Published: over 5 years ago

10.1186/s12915-019-0684-y

MARPLE, a point-of-care, strain-level disease diagnostics and surveillance tool for complex fungal pathogens
Cited by: 50
Author(s): Guru V. Radhakrishnan, Nicola Cook, Vanessa Bueno-Sancho, Clare M. Lewis, Antoine Persoons, Abel Debebe Mitiku, Matthew M. Heaton, Phoebe E. Davey, Bekele Abeyo, Yoseph Alemayehu, Ayele Badebo, M. D. Barnett, Ruth Bryant, Jeron Chatelain, Xianming Chen, Suomeng Dong, Tina Henriksson, Sarah Holdgate, Annemarie Fejer Justesen, Jay Kalous, Zhensheng Kang, Szymon Laczny, Jean-Paul Legoff, Driecus Lesch, Tracy L. Richards, H. S. Randhawa, Tine Thach, Meinan Wang, Mogens S. Hovmøller, David Hodson, Diane G. O. Saunders
Software Mentions: 2
Published: about 7 years ago

10.1038/s41392-021-00690-5

The zinc finger transcription factor, KLF2, protects against COVID-19 associated endothelial dysfunction
Cited by: 27
Author(s): Suowen Xu, Yujie Liu, Yu Ding, Sihui Luo, Xueying Zheng, Xiumei Wu, Zhenghong Liu, Iqra Ilyas, Su-Yu Chen, Shuxin Han, Peter J. Little, Mukesh K. Jain, Jianping Weng
Software Mentions: 2
Published: about 5 years ago

10.1186/s12859-016-1148-9

IGDD: a database of intronless genes in dicots
Cited by: 21
Author(s): Hanwei Yan, Xiaogang Dai, Kai Feng, Qiuyue Ma, Tongming Yin
Software Mentions: 2
Published: about 10 years ago

10.1016/j.stemcr.2020.03.026

Myogenic Progenitor Cell Lineage Specification by CRISPR/Cas9-Based Transcriptional Activators
Cited by: 15
Author(s): Jennifer B. Kwon, Ashish Vankara, Adarsh R. Ettyreddy, Joel D. Bohning, Charles A. Gersbach
Software Mentions: 2
Published: over 6 years ago

10.1186/s13287-019-1235-8

microRNA-301b-3p downregulation underlies a novel inhibitory role of long non-coding RNA MBNL1-AS1 in non-small cell lung cancer
Cited by: 34
Author(s): Peng Li, Wei Xing, Jinliang Xu, Dandan Yuan, Guanghui Liang, Baoxing Liu, MA Hollywood
Software Mentions: 2
Published: over 7 years ago

10.1186/s13287-020-02047-1

Targeted expression profiling reveals distinct stages of early canine fibroblast reprogramming are regulated by 2-oxoglutarate hydroxylases
Cited by: 6
Author(s): Ian C Tobias, Mian-Mian C. Kao, Thomas Parmentier, Hailey Hunter, Jonathan LaMarre, Dean H. Betts
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13287-021-02244-6

Exosomes from human umbilical cord mesenchymal stem cells attenuate the inflammation of severe steroid-resistant asthma by reshaping macrophage polarization
Cited by: 36
Author(s): Bing Dong, Chao Wang, Jing Zhang, Jinrong Zhang, Yinuo Gu, Xiaoping Guo, Xu Zuo, Pan He, Alan Hsu, Guoqiang Wang, Fang Wang
Software Mentions: 2
Published: over 5 years ago

10.1186/s13287-021-02480-w

Hypoxic preconditioning rejuvenates mesenchymal stem cells and enhances neuroprotection following intracerebral hemorrhage via the miR-326-mediated autophagy
Cited by: 29
Author(s): Jianyang Liu, Jialin He, Lite Ge, Han Xiao, Yan Huang, Lei Zeng, Zheng Jiang, Ming Lu
Software Mentions: 2
Published: about 5 years ago

10.1186/s13018-020-01655-0

MicroRNA-1202 plays a vital role in osteoarthritis via KCNQ1OT1 has-miR-1202-ETS1 regulatory pathway
Cited by: 9
Author(s): Changzeng Liu, Jianming Gao, Guangyan Su, Yu‐Tao Xiang, Wei Le
Software Mentions: 2
Published: over 6 years ago

10.7150/thno.31502

A Comprehensive Study of Vesicular and Non-Vesicular miRNAs from a Volume of Cerebrospinal Fluid Compatible with Clinical Practice
Cited by: 16
Author(s): Endika Prieto-Fernández, Ana M. Aransay, Félix Royo, Esperanza González, Juan José Lozano, Borja Santos-Zorrozúa, Nuria Macías-Cámara, Monika González, Raquel Pérez Garay, Javier Benito, África García-Orad, Juan Manuel Falcón‐Pérez
Software Mentions: 2
Published: over 7 years ago

10.1186/s13075-019-2033-5

Long non-coding XIST raises methylation of TIMP-3 promoter to regulate collagen degradation in osteoarthritic chondrocytes after tibial plateau fracture
Cited by: 21
Author(s): Hongwei Chen, Shuo Yang, Ru-yi Shao
Software Mentions: 2
Published: almost 7 years ago

10.1128/AEM.00180-19

Growth Kinetics, Carbon Isotope Fractionation, and Gene Expression in the Hyperthermophile Methanocaldococcus jannaschii during Hydrogen-Limited Growth and Interspecies Hydrogen Transfer
Cited by: 17
Author(s): Begüm D. Topçuoğlu, Cem Meydan, Tran B. Nguyen, Susan Q. Lang, James F. Holden
Software Mentions: 2
Published: over 7 years ago

10.7150/thno.57701

TGF-β loaded exosome enhances ischemic wound healing in vitro and in vivo
Cited by: 46
Author(s): Ao Shi, Jialun Li, Xiaozhen Guo, Michael S. Sabbah, Soulmaz Boroumand, Tony Chieh-Ting Huang, Chunfeng Zhao, André Terzic, Atta Behfar, Steven L. Moran
Software Mentions: 2
Published: over 5 years ago

Projects: cran: pheatmap

Science Score: 75/100

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Papers Mentioning pheatmap 2,572