cran: pheatmap | Projects | Ecosyste.ms: Papers

10.1016/j.isci.2021.102878

CHIP-dependent regulation of the actin cytoskeleton is linked to neuronal cell membrane integrity
Cited by: 6
Author(s): Catarina Dias, Erisa Nita, Jakub Faktor, Ailish Tynan, Lenka Hernychová, Bořivoj Vojtěšek, Jesper Nylandsted, Ted R. Hupp, Tilo Kunath, Kathryn L. Ball
Software Mentions: 2
Published: about 5 years ago

10.3389/fphar.2021.693982

Resveratrol Alleviates Dextran Sulfate Sodium-Induced Acute Ulcerative Colitis in Mice by Mediating PI3K/Akt/VEGFA Pathway
Cited by: 12
Author(s): Fang Zhu, Jujia Zheng, Fang Xu, Yiyuan Xi, Jun Chen, Xiaorong Xu
Software Mentions: 2
Published: about 5 years ago

10.1155/2019/6706354

Integrative Analysis Reveals Comprehensive Altered Metabolic Genes Linking with Tumor Epigenetics Modification in Pan-Cancer
Cited by: 6
Author(s): Yahui Shi, Jinjia Wei, Zixi Chen, Yuhong Yuan, Xingsong Li, Yanyu Zhang, Yuhuan Meng, Yumin Hu, Hongli Du
Software Mentions: 2
Published: almost 7 years ago

10.1155/2021/6626094

Screening of Hub Genes Associated with Pulmonary Arterial Hypertension by Integrated Bioinformatic Analysis
Cited by: 9
Author(s): Yu Zeng, Nanhong Li, Zhenzhen Zheng, Riken Chen, Min Peng, Wang Liu, Jiang Zhu, Mingqing Zeng, Junfen Cheng, Cheng Hong
Software Mentions: 2
Published: over 5 years ago

10.3389/fphys.2018.00532

Effects of Acute Aerobic Exercise on Rats Serum Extracellular Vesicles Diameter, Concentration and Small RNAs Content
Cited by: 62
Author(s): Getúlio Pereira de Oliveira Júnior, William F. Porto, Cintia Palu, Lydyane Menezes Pereira, Bernardo A. Petriz, Jeeser Alves de Almeida, Juliane Cançado Viana, Nezio N. A. Filho, Octávio Luiz Franco, Rinaldo Wellerson Pereira
Software Mentions: 2
Published: over 8 years ago

10.3389/fphys.2021.672099

Genome-Wide Transcriptional Responses of Marine Nematode Litoditis marina to Hyposaline and Hypersaline Stresses
Cited by: 7
Author(s): Yusu Xie, Peng‐Chi Zhang, Liusuo Zhang
Software Mentions: 2
Published: over 5 years ago

10.3389/fphys.2019.01289

Transcription Analysis of the Stress and Immune Response Genes to Temperature Stress in Ostrinia furnacalis
Cited by: 26
Author(s): Kangkang Chen, Tai Tang, Qisheng Song, Zhenying Wang, Kanglai He, Xu Liu, Jiahui Song, Libao Wang, Ye Yang, Chao Feng
Software Mentions: 2
Published: almost 7 years ago

10.3389/fpls.2018.00264

Panax notoginseng Root Cell Death Caused by the Autotoxic Ginsenoside Rg1 Is Due to Over-Accumulation of ROS, as Revealed by Transcriptomic and Cellular Approaches
Cited by: 30
Author(s): Min Yang, Youcong Chuan, Changhong Guo, Jingjing Liao, Yanguo Xu, Xinyue Mei, Yixiang Liu, Huichuan Huang, Xiahong He, Shusheng Zhu
Software Mentions: 2
Published: over 8 years ago

10.1186/s13293-020-00343-2

MicroRNA profiling of the pig periaqueductal grey (PAG) region reveals candidates potentially related to sex-dependent differences
Cited by: 0
Author(s): Klaudia Pawlina-Tyszko, Maria Oczkowicz, Artur Gurgul, Tomasz Szmatoła, Monika Bugno‐Poniewierska
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpls.2020.607893

Evolution of Tandem Repeats Is Mirroring Post-polyploid Cladogenesis in Heliophila (Brassicaceae)
Cited by: 11
Author(s): Mert Dogan, Milan Pouch, Terezie Mandáková, Petra Hloušková, Xi Guo, P.J.D. Winter, Zuzana Chumová, Adriaan van Niekerk, Klaus Mummenhoff, Ihsan A. Al‐Shehbaz, Ladislav Mucina, Martin A. Lysak
Software Mentions: 2
Published: over 5 years ago

10.1186/s13048-020-00760-2

miR-362-3p acts as a tumor suppressor by targeting SERBP1 in ovarian cancer
Cited by: 6
Author(s): Shujun Cao, Na Li, Xihong Liao
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2015.00882

Evolution, diversification, and expression of KNOX proteins in plants
Cited by: 37
Author(s): Jie Gao, Xue Yang, Wei Zhao, Tiange Lang, Tore Samuelsson
Software Mentions: 2
Published: almost 11 years ago

10.3389/fpls.2021.711838

Plasmodiophora brassicae-Triggered Cell Enlargement and Loss of Cellular Integrity in Root Systems Are Mediated by Pectin Demethylation
Cited by: 8
Author(s): Karolina Stefanowicz, Monika Szymańska-Chargot, William Truman, Piotr Walerowski, Marcin Olszak, Adam Augustyniak, Arkadiusz Kosmala, Artur Zdunek, Robert Malinowski
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2020.00406

Genome-Wide Identification of Peanut KCS Genes Reveals That AhKCS1 and AhKCS28 Are Involved in Regulating VLCFA Contents in Seeds
Cited by: 18
Author(s): Dongxin Huai, Xiaomeng Xue, Yang Li, Peng Wang, Jianguo Li, Liying Yan, Yuning Chen, Xin Wang, Nian Liu, Yanping Kang, Zhihui Wang, Yi Huang, Huifang Jiang, Yong Lei, Boshou Liao
Software Mentions: 2
Published: over 6 years ago

10.1242/bio.058676

Dorso-ventral heterogeneity in tracheal basal stem cells
Cited by: 2
Author(s): Tomomi Tadokoro, Keisuke Tanaka, Shun Osakabe, Mimoko Kato, Hisato Kobayashi, Brigid L.M. Hogan, Hideki Taniguchi
Software Mentions: 2
Published: almost 5 years ago

10.3389/fpls.2021.667929

Genome-Wide Identification and Evolutionary Analysis of Gossypium Tubby-Like Protein (TLP) Gene Family and Expression Analyses During Salt and Drought Stress
Cited by: 13
Author(s): Nasreen Bano, Shafquat Fakhrah, Chandra Sekhar Mohanty, Sumit K. Bag
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2020.00625

Genome-Wide Association Study Reveals the Genetic Architecture of Stripe Rust Resistance at the Adult Plant Stage in Chinese Endemic Wheat
Cited by: 6
Author(s): Jing Li, Yunfeng Jiang, Fangjie Yao, Long Li, Yuqi Wang, Yu Wu, Hao Li, Jirui Wang, Qiantao Jiang, Houyang Kang, Wei Li, Pengfei Qi, Jian Ma, Zhien Pu, Shoufen Dai, Yuming Wei, Youliang Zheng, Guoyue Chen
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2020.00484

Evolution and Functional Divergence of the Fructokinase Gene Family in Populus
Cited by: 4
Author(s): Weijie Xu, Yiyang Zhao, Sisi Chen, Jianbo Xie, Deqiang Zhang
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2021.703667

Convergent Epigenetic Mechanisms Avoid Constitutive Expression of Immune Receptor Gene Subsets
Cited by: 11
Author(s): Damián Alejandro Cambiagno, José Roberto Torres, María Elena Alvarez
Software Mentions: 2
Published: almost 5 years ago

10.3389/fpls.2021.725728

Integrated Genomic Analyses From Low-Depth Sequencing Help Resolve Phylogenetic Incongruence in the Bamboos (Poaceae: Bambusoideae)
Cited by: 3
Author(s): Domitille Chalopin, Lynn G. Clark, William P. Wysocki, Minkyu Park, Melvin R. Duvall, Jeffrey L. Bennetzen
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2017.00271

Transcriptomic Analysis of Thermally Stressed Symbiodinium Reveals Differential Expression of Stress and Metabolism Genes
Cited by: 72
Author(s): Sarah L. Gierz, Sylvain Forêt, William Leggat
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2020.01193

Transcriptome Analysis of Solanum Tuberosum Genotype RH89-039-16 in Response to Chitosan
Cited by: 11
Author(s): Philipp Lemke, Bruno M. Moerschbacher, Ratna Singh
Software Mentions: 2
Published: about 6 years ago

10.3389/fpls.2021.729328

Genomic Prediction and the Practical Breeding of 12 Quantitative-Inherited Traits in Cucumber (Cucumis sativus L.)
Cited by: 1
Author(s): Ce Liu, Huan Liu, Yike Han, Wang Xiao, Yuanyuan Ding, Huanwen Meng, Zhihui Cheng
Software Mentions: 2
Published: about 5 years ago

10.3389/fpsyt.2020.603014

Risk Factors Underlying COVID-19 Lockdown-Induced Mental Distress
Cited by: 45
Author(s): Jan Sebastian Novotný, Juan P. González-Rivas, Šárka Kunzová, Mária Skladaná, Anna Pospíšilová, Anna Polcrová, Jose Ramon Medina-Inojosa, Francisco López-Jiménez, Yonas E. Geda, Gorazd B. Stokin
Software Mentions: 2
Published: over 5 years ago

10.1016/j.bbalip.2017.11.005

Specific oxygenation of plasma membrane phospholipids by Pseudomonas aeruginosa lipoxygenase induces structural and functional alterations in mammalian cells
Cited by: 24
Author(s): Maceler Aldrovandi, Swathi Banthiya, Sven W. Meckelmann, You Zhou, Dagmar Heydeck, Valerie Bridget O'Donnell, Hartmut Kühn
Software Mentions: 2
Published: over 8 years ago

10.3389/fvets.2020.00642

RNA-Seq Whole Transcriptome Analysis of Bovine Mammary Epithelial Cells in Response to Intracellular Staphylococcus aureus
Cited by: 9
Author(s): Xiaozhou Wang, Feng Su, Xiaohui Yu, Nan Geng, Liping Li, Run Wang, Meihua Zhang, Jianzhu Liu, Yongxia Liu, Bo Han
Software Mentions: 2
Published: over 5 years ago

10.1186/s12917-018-1696-5

Metagenomic analysis of captive Amur tiger faecal microbiome
Cited by: 17
Author(s): Fengping He, Dan Liú, Le Zhang, Jiancheng Zhai, Yue Ma, Yanchun Xu, Guangshun Jiang, Ke Rong, Jingyun Ma
Software Mentions: 2
Published: almost 8 years ago

10.1534/g3.119.400743

Evaluation of<i>Saccharomyces cerevisiae</i>Wine Yeast Competitive Fitness in Enologically Relevant Environments by Barcode Sequencing
Cited by: 9
Author(s): Simon A. Schmidt, Radka Kolouchova, Angus H. Forgan, Anthony R. Borneman
Software Mentions: 2
Published: over 6 years ago

10.1186/1752-0509-9-S3-S5

A knowledge base for Vitis vinifera functional analysis
Cited by: 13
Author(s): Alfredo Pulvirenti, Rosalba Giugno, Rosario Distefano, Giuseppe Pigola, Misael Mongiovì, Girolamo Giudice, Vera Vendramin, Alfio Lombardo, Federica Cattonaro, Alfredo Ferro
Software Mentions: 2
Published: over 11 years ago

10.3390/genes9010032

Genome-Wide Methylation Patterns in Androgen-Independent Prostate Cancer Cells: A Comprehensive Analysis Combining MeDIP-Bisulfite, RNA, and microRNA Sequencing Data
Cited by: 5
Author(s): Yumin Wang, Tingting Qin, Wangqiang Hu, Binghua Chen, Mei-jie Dai, Gang Xu
Software Mentions: 2
Published: over 8 years ago

10.3390/genes9110547

Assembly of a Complete Mitogenome of Chrysanthemum nankingense Using Oxford Nanopore Long Reads and the Diversity and Evolution of Asteraceae Mitogenomes
Cited by: 32
Author(s): Shuaibin Wang, Qingwei Song, Shanshan Li, Zhigang Hu, Dong Gao, Chi Song, Hongwen Huang, Yifei Liu
Software Mentions: 2
Published: almost 8 years ago

10.3390/genes9120592

Genome-Wide Analysis of LRR-RLK Gene Family in Four Gossypium Species and Expression Analysis during Cotton Development and Stress Responses
Cited by: 11
Author(s): Ruibin Sun, Shaohui Wang, Dan Ma, Chuanliang Liu
Software Mentions: 2
Published: almost 8 years ago

10.3390/genes10020155

Identification of Differentially Expressed Genes and Pathways for Abdominal Fat Deposition in Ovariectomized and Sham-Operated Chickens
Cited by: 5
Author(s): Xiaopeng Mu, Xiaoyan Cui, Ranran Liu, Qinghe Li, Maiqing Zheng, Guiping Zhao, Chao Ge, Jie Wen, Yaodong Hu, Huanxian Cui
Software Mentions: 2
Published: over 7 years ago

10.3390/genes10100827

Comparative Study of Gut Microbiota in Wild and Captive Giant Pandas (Ailuropoda melanoleuca)
Cited by: 54
Author(s): Wei Guo, Saurabh Mishra, Chengdong Wang, Hemin Zhang, Ruihong Ning, Fanli Kong, Bo Zeng, Jiangchao Zhao, Ying Liu
Software Mentions: 2
Published: almost 7 years ago

10.18632/oncotarget.13139

FGFR3, as a receptor tyrosine kinase, is associated with differentiated biological functions and improved survival of glioma patients
Cited by: 10
Author(s): Zheng Wang, Chuanbao Zhang, Lihua Sun, Jingshan Liang, Xing Liu, Guanzhang Li, Kun Yao, Wei Zhang, Tao Jiang
Software Mentions: 2
Published: almost 10 years ago

10.3390/genes10100804

Transcriptional Analysis of Masson Pine (Pinus massoniana) under High CO2 Stress
Cited by: 17
Author(s): Fan Wu, Xiaobo Sun, Bingzhang Zou, Peihuang Zhu, Nengqing Lin, Jingquan Lin, Kongshu Ji
Software Mentions: 2
Published: almost 7 years ago

10.3390/genes10100730

Genome-Wide Analysis of Cotton Auxin Early Response Gene Families and Their Roles in Somatic Embryogenesis
Cited by: 14
Author(s): Ruibin Sun, Shaohui Wang, Dan Ma, Yilin Li, Chuanliang Liu
Software Mentions: 2
Published: almost 7 years ago

10.3390/genes11010020

Analysis of NAC Domain Transcription Factor Genes of Tectona grandis L.f. Involved in Secondary Cell Wall Deposition
Cited by: 11
Author(s): Fernando Manuel Matias Hurtado, Maísa de Siqueira Pinto, Perla Novais de Oliveira, Diego Mauricio Riaño-Pachón, Laura Beatriz Inocente, Helaine Carrer
Software Mentions: 2
Published: over 6 years ago

10.1186/s12900-018-0096-1

Deciphering evolution of immune recognition in antibodies
Cited by: 4
Author(s): Harmeet Kaur, Neetu Sain, Debasisa Mohanty, Dinakar M. Salunke
Software Mentions: 2
Published: almost 8 years ago

10.3390/genes11020219

Clinical Ketosis-Associated Alteration of Gene Expression in Holstein Cows
Cited by: 10
Author(s): Zhoulin Wu, Shiyi Chen, Chao Qin, Xianbo Jia, Feilong Deng, Jie Wang, Songjia Lai
Software Mentions: 2
Published: over 6 years ago

10.1186/s12890-021-01655-8

DNA methylation and gene expression profiles to identify childhood atopic asthma associated genes
Cited by: 4
Author(s): Rui Chen, Li-Zhen Piao, Ling Liu, Xiaofei Zhang
Software Mentions: 2
Published: almost 5 years ago

10.3390/genes11050515

Genomic Identification, Evolution, and Expression Analysis of Collagen Genes Family in Water Buffalo during Lactation
Cited by: 11
Author(s): Xingrong Lu, Anqin Duan, Shasha Liang, Xiaoya Ma, Tingxian Deng
Software Mentions: 2
Published: over 6 years ago

10.3390/genes11050489

Transcriptome Analysis of circRNA and mRNA in Theca Cells during Follicular Development in Chickens
Cited by: 15
Author(s): Manman Shen, Ping Wu, Tingting Li, Pengfei Wu, Fuxiang Chen, Lan Chen, Kaizhou Xie, Jinyu Wang, Genxi Zhang
Software Mentions: 2
Published: over 6 years ago

10.18632/oncotarget.15596

Non-small cell lung cancer associated microRNA expression signature: integrated bioinformatics analysis, validation and clinical significance
Cited by: 56
Author(s): Chunyu Li, Yunhong Yin, Xiao Liu, Xuejiao Xi, Weixiao Xue, Yi-Qing Qu
Software Mentions: 2
Published: over 9 years ago

10.1186/s12870-019-1644-y

Elevated CO2 concentration promotes photosynthesis of grape (Vitis vinifera L. cv. ‘Pinot noir’) plantlet in vitro by regulating RbcS and Rca revealed by proteomic and transcriptomic profiles
Cited by: 25
Author(s): Xin Zhao, Wenfang Li, Ying Wang, Zhiying Ma, Shuai Yang, Qi Zhou, Juan Mao, Baihong Chen
Software Mentions: 2
Published: over 7 years ago

10.3390/genes11111347

Comparative Genomics Reveals Novel Target Genes towards Specific Control of Plant-Parasitic Nematodes
Cited by: 25
Author(s): Priscila Grynberg, Roberto Coiti Togawa, Leticia Dias de Freitas, José Dijair Antonino, Corinne Rancurel, Marcos Mota do Carmo Costa, Maria Fátima Grossi‐de‐Sá, Robert G. Miller, Ana Cristina Miranda Brasileiro, P. M. Guimarães, Etienne G. J. Danchin
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12870-021-03068-5

Transcriptomics identifies key defense mechanisms in rice resistant to both leaf-feeding and phloem feeding herbivores
Cited by: 7
Author(s): Yang Li, Boon Huat Cheah, Yu-Fu Fang, Yun-Hung Kuang, Shu Wha Lin, Chung-Ta Liao, Sheng-Lung Huang, Ya-Fen Lin, Wen-Po Chuang
Software Mentions: 2
Published: about 5 years ago

10.18632/oncotarget.17295

Transcriptional response profiles of paired tumor-normal samples offer novel perspectives in pan-cancer analysis
Cited by: 22
Author(s): Shuofeng Hu, Hanyu Yuan, Zongcheng Li, Jian Zhang, Jiaqi Wu, Yaowen Chen, Qiang Shi, Wu Ren, Ningsheng Shao, Xiaomin Ying
Software Mentions: 2
Published: over 9 years ago

10.1186/s12870-020-02464-7

The transcriptional reprograming and functional identification of WRKY family members in pepper’s response to Phytophthora capsici infection
Cited by: 16
Author(s): Cheng Wei, Yan Jiang, Jiangtao Peng, Jianwen Guo, Menglan Lin, Chengting Jin, Jinfeng Huang, Weiqi Tang, Deyi Guan, Shuilin He
Software Mentions: 2
Published: over 6 years ago

10.18632/oncotarget.20627

The downregulation of putative anticancer target BORIS/CTCFL in an addicted myeloid cancer cell line modulates the expression of multiple protein coding and ncRNA genes
Cited by: 2
Author(s): Evgeny Teplyakov, Qiongfang Wu, Jian Liu, Elena M. Pugacheva, Dmitry Loukinov, Abdelhalim Boukaba, Victor Lobanenkov, Alexander Strunnikov
Software Mentions: 2
Published: about 9 years ago

10.1186/s13059-020-02069-1

Mapping regulatory variants controlling gene expression in drought response and tolerance in maize
Cited by: 67
Author(s): Shengxue Liu, Cuiping Li, Hongwei Wang, Shuhui Wang, Shiping Yang, Xiaohu Liu, Jianbing Yan, Bailin Li, Mary Beatty, Gina Zastrow-Hayes, Shuhui Song, Feng Qin
Software Mentions: 2
Published: about 6 years ago

10.1186/s13059-021-02413-z

Integration of metabolomics, genomics, and immune phenotypes reveals the causal roles of metabolites in disease
Cited by: 24
Author(s): Xiaojing Chu, Martin Jaeger, Joep Beumer, Olivier B. Bakker, Raúl Aguirre-Gamboa, Marije Oosting, Sanne P. Smeekens, Simone J.C.F.M. Moorlag, Vera P. Mourits, Valerie A C M Koeken, Charlotte de Bree, Trees Jansen, Ian T. Mathews, Khoi Dao, Mahan Najhawan, Jeramie D. Watrous, Irma Joosten, Sonia Sharma, Hans J. P. M. Koenen, Sebo Withoff, Iris Jonkers, Romana T. Netea‐Maier, Ramnik J. Xavier, Lude Franke, Cheng‐Jian Xu, Leo A. B. Joosten, Serena Sanna, Mohit Jain, Vinod Kumar, Hans Clevers, Cisca Wijmenga, Mihai G. Netea, Yang Li
Software Mentions: 2
Published: about 5 years ago

10.1186/s12870-020-2288-7

Comparative functional genomics analysis of cytochrome P450 gene superfamily in wheat and maize
Cited by: 45
Author(s): Yixuan Li, Kaifa Wei
Software Mentions: 2
Published: over 6 years ago

10.1093/gbe/evu211

Phylogenomics and Evolutionary Dynamics of the Family Actinomycetaceae
Cited by: 22
Author(s): Kelei Zhao, Wujiao Li, Chunlan Kang, Lianming Du, Ting Huang, Xiuyue Zhang, Min Wu, Bisong Yue
Software Mentions: 2
Published: almost 12 years ago

10.1093/gbe/evab051

Evolutionary Contribution of Duplicated Genes to Genome Evolution in the Ginseng Species Complex
Cited by: 3
Author(s): Ming-Rui Li, Ning Ding, Tianyuan Lu, Jing Zhao, Zhenhui Wang, Peng Jiang, Sitong Liu, Xinfeng Wang, Bao Liu, Linfeng Li
Software Mentions: 2
Published: over 5 years ago

10.1186/s13073-016-0330-z

The early infant gut microbiome varies in association with a maternal high-fat diet
Cited by: 256
Author(s): Derrick M. Chu, Kathleen M. Antony, Jun Ma, Amanda Prince, Lori Showalter, Michelle Moller, Kjersti M. Aagaard
Software Mentions: 2
Published: about 10 years ago

10.1186/s13073-016-0375-z

Copy number analysis by low coverage whole genome sequencing using ultra low-input DNA from formalin-fixed paraffin embedded tumor tissue
Cited by: 36
Author(s): Tanjina Kader, David Goode, Stephen Q. Wong, Jacquie Connaughton, Simone M. Rowley, Lisa Devereux, David Byrne, Stephen B. Fox, Gisela Mir Arnau, Richard W. Tothill, Ian Campbell, Kylie L. Gorringe
Software Mentions: 2
Published: almost 10 years ago

10.1186/s13073-017-0409-1

Characterization of oral and gut microbiome temporal variability in hospitalized cancer patients
Cited by: 75
Author(s): Jessica Galloway-Peña, Daniel P. Smith, Pranoti Sahasrabhojane, W. Duncan Wadsworth, Bryan Fellman, Nadim J. Ajami, Elizabeth J. Shpall, Naval Daver, Michele Guindani, Joseph F. Petrosino, Dimitrios P. Kontoyiannis, Samuel A. Shelburne
Software Mentions: 2
Published: over 9 years ago

10.1186/s12870-017-1063-x

Evolution, gene expression profiling and 3D modeling of CSLD proteins in cotton
Cited by: 17
Author(s): Yanpeng Li, Yang Tie-gang, Dandan Dai, Ying Hu, Xiaoyang Guo, Hongwei Guo
Software Mentions: 2
Published: about 9 years ago

10.1186/s12870-020-02651-6

Comprehensive analysis of the Ppatg3 mutant reveals that autophagy plays important roles in gametophore senescence in Physcomitrella patens
Cited by: 6
Author(s): Zexi Chen, Wenbo Wang, Xiaojun Pu, Xueyi Dong, Bei Gao, Ping Li, Yulin Jia, Aizhong Liu, Li Liu
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12870-020-2329-2

Characterization of the Gh4CL gene family reveals a role of Gh4CL7 in drought tolerance
Cited by: 30
Author(s): Jie Sun, Xingjiang Xiong, Xiaoli Zhang, Hongjie Feng, Qian Zhu, Yanjun Li
Software Mentions: 2
Published: over 6 years ago

10.1186/s13073-021-00880-4

Crosstalk between microRNA expression and DNA methylation drives the hormone-dependent phenotype of breast cancer
Cited by: 24
Author(s): Miriam Ragle Aure, Osbreac, Thomas Fleischer, Sunniva Bjørklund, Jørgen Ankill, Jaime A Castro-Mondragón, Anne‐Lise Børresen‐Dale, Jörg Tost, Kristine Kleivi Sahlberg, Anthony Mathelier, Xavier Tekpli, Vessela N. Kristensen
Software Mentions: 2
Published: over 5 years ago

10.1016/j.gpb.2020.06.012

Screening of Potential Biomarkers for Gastric Cancer with Diagnostic Value Using Label-free Global Proteome Analysis
Cited by: 12
Author(s): Yongxi Song, Jun Wang, Jingwei Sun, Xiaowan Chen, Jinxin Shi, Zhonghua Wu, Dehao Yu, Fei Zhang, Zhenning Wang
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12870-020-02431-2

Genome-wide identification and functional characterization of cotton (Gossypium hirsutum) MAPKKK gene family in response to drought stress
Cited by: 22
Author(s): Jingbo Zhang, Xinpeng Wang, Ya-Chao Wang, Yi-Hao Chen, Jingwen Luo, Deng-Di Li, Xuebao Li
Software Mentions: 2
Published: over 6 years ago

10.1186/s41065-020-00166-6

Immunological analysis and differential genes screening of venous thromboembolism
Cited by: 2
Author(s): Lina Gao, Qiang Li, Jianqin Xie, Wan-Xia Yang, Chongge You
Software Mentions: 2
Published: over 5 years ago

10.1186/s41065-021-00190-0

Bioinformatics analysis of differentially expressed genes and identification of an miRNA–mRNA network associated with entorhinal cortex and hippocampus in Alzheimer’s disease
Cited by: 4
Author(s): Haoming Li, Lin Zou, Jinhong Shi, Xiao Han
Software Mentions: 2
Published: about 5 years ago

10.1186/s12882-020-02142-8

Identification of biomarkers and pathways in hypertensive nephropathy based on the ceRNA regulatory network
Cited by: 8
Author(s): Zhen Wang, Zhongjie Liu, Yong Yang, Kang Lei
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41438-020-00381-2

Coexpression network analysis reveals an MYB transcriptional activator involved in capsaicinoid biosynthesis in hot peppers
Cited by: 43
Author(s): Binmei Sun, Xin Zhou, Changming Chen, Chengjie Chen, Kunhao Chen, Muxi Chen, Shaoqun Liu, Guoju Chen, Bihao Cao, Fanrong Cao, Jing Liu, Zhiwen Zhu
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41438-021-00470-w

Isolation and comparative proteomic analysis of mitochondria from the pulp of ripening citrus fruit
Cited by: 10
Author(s): Xin Li, Yingfang Chai, Hong-Chang Yang, Zhen Tian, Chengyang Li, Rangwei Xu, Chunmei Shi, Feng Zhu, Yunliu Zeng, Xiuxin Deng, Pengwei Wang, Yunjiang Cheng
Software Mentions: 2
Published: over 5 years ago

10.1038/s41438-020-0261-0

Coriander Genomics Database: a genomic, transcriptomic, and metabolic database for coriander
Cited by: 31
Author(s): Xiaoming Song, Fulei Nie, Wei Chen, Xiao Ma, Ke Gong, Qing Yang, Jinpeng Wang, Nan Li, Pengchuan Sun, Qiaoying Pei, Tong Yu, Jingjing Hu, Xinyu Li, Tong Wu, Shuyan Feng, Xiuqing Li, Xiyin Wang
Software Mentions: 2
Published: over 6 years ago

10.1186/s12866-020-01794-8

Organic mulching positively regulates the soil microbial communities and ecosystem functions in tea plantation
Cited by: 44
Author(s): Shuning Zhang, Yu Wang, Litao Sun, Chen Qiu, Yiqian Ding, Honglian Gu, Linjun Wang, Zhaoshun Wang, Zhaotang Ding
Software Mentions: 2
Published: over 6 years ago

10.1016/j.immuni.2020.07.004

Flexible Usage and Interconnectivity of Diverse Cell Death Pathways Protect against Intracellular Infection
Cited by: 83
Author(s): Marcel Doerflinger, Yexuan Deng, Paul G. Whitney, Ranja Salvamoser, Sven Engel, Andrew J. Kueh, Lin Tai, Annabell Bachem, Elise Gressier, Niall Geoghegan, Stephen Wilcox, Kelly L. Rogers, Alexandra L. Garnham, Michael A. Dengler, Stefanie Bader, Gregor Ebert, Jaclyn S. Pearson, Dominic De Nardo, Nancy Wang, Chenying Yang, Milton Pereira, Clare E. Bryant, Richard A. Strugnell, James E. Vince, Marc Pellegrini, Andreas Strasser, Sammy Bedoui, Marco J. Herold
Software Mentions: 2
Published: about 6 years ago

10.1016/j.immuni.2020.10.020

Antagonistic Inflammatory Phenotypes Dictate Tumor Fate and Response to Immune Checkpoint Blockade
Cited by: 113
Author(s): Eduardo Bonavita, Christian P. Bromley, Gustav Jonsson, Victoria S. Pelly, Sudhakar Sahoo, Katherine Walwyn-Brown, Sofia Mensurado, Agrin Moeini, Eimear Flanagan, Charlotte R. Bell, Shih‐Chieh Chiang, C.P. Chikkanna-Gowda, Neil C. Rogers, Bruno Silva‐Santos, Sébastien Jaillon, Alberto Mantovani, Caetano Reis e Sousa, Nadia Guerra, Daniel M. Davis, Santiago Zelenay
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12866-020-01871-y

Cow manure application effectively regulates the soil bacterial community in tea plantation
Cited by: 28
Author(s): Shuning Zhang, Litao Sun, Yu Wang, Kai Fan, Qingshan Xu, Yusheng Li, Qingping Ma, Wang Ji-guo, Wanming Ren, Zhaotang Ding
Software Mentions: 2
Published: about 6 years ago

10.1186/s12866-020-01745-3

Effects of aging on the quality of roasted sesame-like flavor Daqu
Cited by: 15
Author(s): Guangsen Fan, Zhaohui Fu, Teng Chen, Pengxiao Liu, Qiuhua Wu, Md Khondakar Raziur Rahman, Xiuting Li
Software Mentions: 2
Published: over 6 years ago

10.1128/IAI.00311-19

Identification of Potential Cerebrospinal Fluid Biomarkers To Discriminate between Infection and Sterile Inflammation in a Rat Model of Staphylococcus epidermidis Catheter Infection
Cited by: 5
Author(s): Gwenn Skar, Matthew Beaver, Amy Aldrich, Dragana Lagundžin, Ishwor Thapa, Nicholas T. Woods, Hesham Ali, Jessica Snowden, Tammy Kielian
Software Mentions: 2
Published: about 7 years ago

10.1186/1755-8794-8-S2-S5

Relating hepatocellular carcinoma tumor samples and cell lines using gene expression data in translational research
Cited by: 56
Author(s): Bin Chen, Marina Sirota, Hua Fan-Minogue, Dexter Hadley, Atul J. Butte
Software Mentions: 2
Published: over 11 years ago

10.1161/JAHA.120.017091

Unique Transcriptome Signature Distinguishes Patients With Heart Failure With Myopathy
Cited by: 10
Author(s): Talia Caspi, Sam Straw, Chew Weng Cheng, Jack Garnham, Jason L. Scragg, Jessica Smith, Aaron Koshy, Eylem Levelt, Piruthivi Sukumar, John Gierula, David J. Beech, Mark T. Kearney, Richard M Cubbon, Stephen Wheatcroft, Klaus K. Witte, Lee D. Roberts, T. Scott Bowen
Software Mentions: 2
Published: almost 6 years ago

10.18632/oncotarget.27712

Down syndrome iPSC model: endothelial perspective on tumor development
Cited by: 2
Author(s): Mariana Perepitchka, Yekaterina Galat, Igor P. Beletsky, Philip M. Iannaccone, Vasiliy Galat
Software Mentions: 2
Published: almost 6 years ago

10.1074/jbc.RA120.015755

Genomic determinants implicated in the glucocorticoid-mediated induction of KLF9 in pulmonary epithelial cells
Cited by: 9
Author(s): Mahmoud Mostafa, Akanksha Bansal, Aubrey N. Michi, Sarah K. Sasse, David Proud, Anthony N. Gerber, Robert Newton
Software Mentions: 2
Published: over 5 years ago

10.1186/s40709-020-00116-3

A potential prognostic model based on miRNA expression profile in The Cancer Genome Atlas for bladder cancer patients
Cited by: 3
Author(s): Yan Liu, Dong Zhu, Hong Xing, Yi Hou, Yan Sun
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-017-03820-8

Tracing the epidemic history of HIV-1 CRF01_AE clusters using near-complete genome sequences
Cited by: 31
Author(s): Xingguang Li, Haizhou Liu, Lu Liu, Yi Feng, Marcia L. Kalish, Simon Y. W. Ho, Yiming Shao
Software Mentions: 2
Published: about 9 years ago

10.1186/s12920-020-00834-6

Identification of LINC02310 as an enhancer in lung adenocarcinoma and investigation of its regulatory network via comprehensive analyses
Cited by: 4
Author(s): Wenyuan Zhao, Jun Wang, Qingxi Luo, Wei Peng, Bin Li, Lei Wang, Chunfang Zhang, Chaojun Duan
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-10436-5

Microbial communities in peatlands along a chronosequence on the Sanjiang Plain, China
Cited by: 16
Author(s): Xue Zhou, Zhenqing Zhang, Lei Tian, Xiujun Li, Chunjie Tian
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-18773-1

Identification and validation of an 18-gene signature highly-predictive of bladder cancer metastasis
Cited by: 8
Author(s): Beihe Wang, Fangning Wan, Haoyue Sheng, Yiping Zhu, Guohai Shi, Ye Zhang, Bo Dai, Yijun Shen, Yao Zhu, Dingwei Ye
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-20935-8

Impact of mid-season sulphur deficiency on wheat nitrogen metabolism and biosynthesis of grain protein
Cited by: 39
Author(s): Zitong Yu, Angéla Juhász, Shahidul Islam, Dean Diepeveen, Jingjuan Zhang, Penghao Wang, Wujun Ma
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-22753-4

Allele-specific expression in a family quartet with autism reveals mono-to-biallelic switch and novel transcriptional processes of autism susceptibility genes
Cited by: 13
Author(s): Chun‐Yen Lin, Kai Wei Chang, Chia Yi Lin, Jia Ying Wu, Hilary Coon, Pei Hsin Huang, Hong Nerng Ho, Schahram Akbarian, Susan Shur‐Fen Gau, Hsien-Sung Huang
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-23189-6

The role of cuticular hydrocarbons in mate recognition in Drosophila suzukii
Cited by: 50
Author(s): Yannick Snellings, Beatriz Herrera, Bruna Wildemann, Melissa Beelen, Liesbeth Zwarts, Tom Wenseleers, Patrick Callaerts
Software Mentions: 2
Published: over 8 years ago

10.1186/s13018-020-01655-0

MicroRNA-1202 plays a vital role in osteoarthritis via KCNQ1OT1 has-miR-1202-ETS1 regulatory pathway
Cited by: 9
Author(s): Changzeng Liu, Jianming Gao, Guangyan Su, Yu‐Tao Xiang, Wei Le
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-26718-5

Transcriptome analysis of the reef-building octocoral, Heliopora coerulea
Cited by: 16
Author(s): Christine Guzman, Chuya Shinzato, Tsai-Ming Lu, Cecilia Conaco
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-27479-x

Damage-associated molecular pattern recognition is required for induction of retinal neuroprotective pathways in a sex-dependent manner
Cited by: 6
Author(s): Marcus Hooper, Jiangang Wang, Robert Browning, John D. Ash
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-31432-3

Metabolome and molecular basis for carbohydrate increase and nitrate reduction in burley tobacco seedlings by glycerol through upregulating carbon and nitrogen metabolism
Cited by: 8
Author(s): Yafei Li, Dong Chil Chang, Huijuan Yang, Jing Wang, Hongzhi Shi
Software Mentions: 2
Published: about 8 years ago

10.1021/acs.jproteome.1c00378

Evaluation of Spin Columns for Human Plasma Depletion to Facilitate MS-Based Proteomics Analysis of Plasma
Cited by: 21
Author(s): Xiaofang Cao, AnnSofi Sandberg, J.E. Araújo, Filip Cvetkovski, Erik Berglund, Lars E. Eriksson, Maria Pernemalm
Software Mentions: 2
Published: about 5 years ago

10.1186/s12879-019-4123-z

DisV-HPV16, versatile and powerful software to detect HPV in RNA sequencing data
Cited by: 1
Author(s): Bingqing Yan, Xinyi Liu, Siwei Zhang, Siyang Yu, Fangjia Tong, Huanhuan Xie, Lixia Song, Yan Zhang, Lanlan Wei
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-34614-1

Genome-wide Identification of Jatropha curcas MAPK, MAPKK, and MAPKKK Gene Families and Their Expression Profile Under Cold Stress
Cited by: 17
Author(s): Haibo Wang, Ming Gong, Junyun Guo, Hu Xiu, Yong Gao, Chao Liu, Dong-Qin Dai, Lizhou Tang
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-018-37565-9

Environmental filtering of bacterial functional diversity along an aridity gradient
Cited by: 14
Author(s): Huacan Song, Yu Shi, Teng Yang, Haiyan Chu, Jin‐Sheng He, Hyoki Kim, Piotr G. Jabłoński, Jonathan M. Adams
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-38186-y

Human macrophages survive and adopt activated genotypes in living zebrafish
Cited by: 18
Author(s): Colin D. Paul, Alexus Devine, Kevin Bishop, Qing Xu, William J. Wulftange, Hannah A. Burr, Kathryn M. Daly, Chaunte Lewis, Daniel S. Green, Jack R. Staunton, Swati Choksi, Zheng-gang Liu, Kandice Tanner
Software Mentions: 2
Published: over 7 years ago

10.1515/biol-2021-0052

Potential prognostic markers and significant lncRNA–mRNA co-expression pairs in laryngeal squamous cell carcinoma
Cited by: 4
Author(s): Junguo Wang, Dingding Liu, Yajun Gu, Han Zhou, Hui Li, Xiaohui Shen, Xiaoyun Qian
Software Mentions: 2
Published: over 5 years ago

10.1186/s12865-021-00403-1

Comprehensive analysis of immunoglobulin and clinical variables identifies functional linkages and diagnostic indicators associated with Behcet’s disease patients receiving immunomodulatory treatment
Cited by: 3
Author(s): Linlin Cheng, Li Yang, Ziyan Wu, Liubing Li, Chenxi Liu, Jianhua Liu, Jiayu Dai, Wenjie Zheng, Fengchun Zhang, Liujun Tang, Xiaobo Yu, Yongzhe Li
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-43025-9

Fungal Elevational Rapoport pattern from a High Mountain in Japan
Cited by: 29
Author(s): Matthew Chidozie Ogwu, Koichi Takahashi, Ke Dong, Huacan Song, Itumeleng Moroenyane, Bruce Waldman, Jonathan M. Adams
Software Mentions: 2
Published: over 7 years ago

Projects: cran: pheatmap

Science Score: 75/100

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Papers Mentioning pheatmap 2,572