Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: pheatmap

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/pheatmap

Pretty Heatmaps
17 versions
Latest release: almost 6 years ago
77 dependent packages
37,681 downloads last month

Papers Mentioning pheatmap 2,572

10.1093/molbev/msaa027
Cis- and Trans-Regulatory Variations in the Domestication of the Chili Pepper Fruit
Cited by: 19
Author(s): Erik Díaz-Valenzuela, Ruairidh J. H. Sawers, Angélica Cibrián-Jaramillo
Software Mentions: 3
Published: almost 5 years ago
10.1093/molbev/msab103
The Evolution of Calcification in Reef-Building Corals
Cited by: 15
Author(s): Xin Wang, Didier Zoccola, Yi Jin Liew, Éric Tambutté, Guoxin Cui, Denis Allemand, Sylvie Tambutté, Manuel Aranda
Software Mentions: 3
Published: over 3 years ago
10.1093/molbev/msaa099
Extensive Ethnolinguistic Diversity in Vietnam Reflects Multiple Sources of Genetic Diversity
Cited by: 61
Author(s): Dang Liu, Nguyễn Thùy Dương, Nguyễn Đăng Tôn, Nguyễn Văn Phòng, Brigitte Pakendorf, Nông Văn Hải, Mark Stoneking
Software Mentions: 3
Published: over 4 years ago
10.1093/molbev/msaa245
A Truncated Singleton NLR Causes Hybrid Necrosis in<i>Arabidopsis thaliana</i>
Cited by: 24
Author(s): Cristina A. Barragan, Maximilian Collenberg, Jinge Wang, Rachelle R.Q. Lee, Wei Yuan Cher, Fernando A. Rabanal, Haim Ashkenazy, Detlef Weigel, Eunyoung Chae
Software Mentions: 3
Published: about 4 years ago
10.1186/s12943-019-0977-3
MiR155 sensitized B-lymphoma cells to anti-PD-L1 antibody via PD-1/PD-L1-mediated lymphoma cell interaction with CD8+T cells
Cited by: 60
Author(s): Zhong Zheng, Rui Sun, Hongzheng Zhao, Di Fu, Hui Zhong, Xiang‐Qin Weng, Bin Qu, Yan Zhao, Li Wang, Wei‐Li Zhao
Software Mentions: 3
Published: over 5 years ago
10.1074/mcp.RA117.000445
Infection by the Helminth Parasite Fasciola hepatica Requires Rapid Regulation of Metabolic, Virulence, and Invasive Factors to Adjust to Its Mammalian Host
Cited by: 70
Author(s): Krystyna Cwiklinski, Heather Jewhurst, Paul McVeigh, Tara Barbour, Aaron G. Maule, José F. Tort, Sandra M. O’Neill, Mark W. Robinson, Sheila Donnelly, John P. Dalton
Software Mentions: 3
Published: over 6 years ago
10.3390/molecules26082387
Genome-Wide Analysis of PL7 Alginate Lyases in the Genus Zobellia
Cited by: 8
Author(s): Nadezhda Chernysheva, Evgeniya Bystritskaya, G. N. Likhatskaya, Olga I. Nedashkovskaya, Marina Isaeva
Software Mentions: 3
Published: over 3 years ago
10.1016/j.molmet.2020.100978
Functional changes of the liver in the absence of growth hormone (GH) action – Proteomic and metabolomic insights from a GH receptor deficient pig model
Cited by: 20
Author(s): Evamaria Olga Riedel, Arne Hinrichs, Elisabeth Kemter, Maik Dahlhoff, Mattias Backman, Birgit Rathkolb, Cornelia Prehn, Jerzy Adamski, Simone Renner, Andreas Blutke, Martin Hrabě de Angelis, Martin Bidlingmaier, Jochen Schopohl, Georg J. Arnold, Thomas Fröhlich, Eckhard Wolf
Software Mentions: 3
Published: over 4 years ago
10.1111/mmi.14362
<i>Mycobacterium tuberculosis</i>requires glyoxylate shunt and reverse methylcitrate cycle for lactate and pyruvate metabolism
Cited by: 66
Author(s): Agnese Serafini, Lendl Tan, Stuart Horswell, Steven Howell, Greenwood Dj, Deborah M. Hunt, Minh-Duy Phan, Mark A. Schembri, Mercedes Monteleone, Christine R Montague, Warwick J. Britton, Acely Garza-Garcia, Ambrosius P. Snijders, Brian C. VanderVen, Maximiliano G. Gutiérrez, Nicholas P. West, Luiz Pedro S. de Carvalho
Software Mentions: 3
Published: over 5 years ago
10.1002/1878-0261.12951
Detection of phenotype‐specific therapeutic vulnerabilities in breast cells using a CRISPR loss‐of‐function screen
Cited by: 3
Author(s): Anna Barkovskaya, Craig M. Goodwin, Kotryna Seip, Bylgja Hilmarsdóttir, Solveig Pettersen, Clint A. Stalnecker, Olav Engebraaten, Eiríkur Briem, Channing J. Der, Siver Andreas Moestue, Þórarinn Guðjónsson, Gunhild M. Mælandsmo, Lina Prasmickaite
Software Mentions: 3
Published: over 3 years ago
10.1002/1878-0261.12642
Deciphering tissue‐based proteome signatures revealed novel subtyping and prognostic markers for thymic epithelial tumors
Cited by: 7
Author(s): Xin Ku, Qiangling Sun, Lei Zhu, Zhenyu Gu, Yuchen Han, Ning Xu, Chen Meng, Xiaohua Yang, Wei Yan, Wentao Fang
Software Mentions: 3
Published: almost 5 years ago
10.15252/msb.20167159
Recurrent patterns of DNA copy number alterations in tumors reflect metabolic selection pressures
Cited by: 60
Author(s): Nicholas A. Graham, Aspram Minasyan, Anastasia Lomova, Ashley Cass, Nikolas G. Balanis, Michael Friedman, Shawna T. Chan, Sophie R. Zhao, Adrián Delgado, James Go, L. P. Beck, Christian Hurtz, Carina Ng, Rong Qiao, Johanna ten Hoeve, Nicolaos Palaskas, Hong Wu, Markus Müschen, Asha S. Multani, Elisa Port, Steven M. Larson, Nikolaus Schultz, Daniel Braas, Heather R. Christofk, Ingo K. Mellinghoff, Thomas G. Graeber
Software Mentions: 3
Published: almost 8 years ago
10.15252/msb.202110207
A genome‐scale yeast library with inducible expression of individual genes
Cited by: 30
Author(s): Yuko Arita, Griffin Kim, Li Z, Helena Friesen, Gina Turco, Rebecca Y. Wang, Dale Climie, Matej Ušaj, Manuel Hotz, Emily H. Stoops, Anastasia Baryshnikova, Charles Boone, David Botstein, Brenda Andrews, R. Scott McIsaac
Software Mentions: 3
Published: over 3 years ago
10.1016/j.omtn.2020.04.018
MicroRNA-4500 Inhibits Migration, Invasion, and Angiogenesis of Breast Cancer Cells via RRM2-Dependent MAPK Signaling Pathway
Cited by: 28
Author(s): Shaoying Li, Hui-Fen Mai, Yefeng Zhu, Guofeng Li, Jing Sun, Guisen Li, Bichan Liang, Heng Chen
Software Mentions: 3
Published: about 4 years ago
10.1186/s12985-016-0592-5
Functional prediction of differentially expressed lncRNAs in HSV-1 infected human foreskin fibroblasts
Cited by: 15
Author(s): Benxia Hu, Yongxia Huo, Guijun Chen, Liping Yang, Dong‐Dong Wu, Jumin Zhou
Software Mentions: 3
Published: over 8 years ago
10.3390/v13091805
Acute HIV-1 and SARS-CoV-2 Infections Share Slan+ Monocyte Depletion—Evidence from an Hyperacute HIV-1 Case Report
Cited by: 1
Author(s): Guilherme B. Farias, Robert Badura, Carolina M. Conceição, André M. C. Gomes, Ana Godinho‐Santos, Joel Laia, Pedro Rosmaninho, Diana Santos, Catarina Mota, Afonso R. M. Almeida, S. Fernandes, A.C. Trombetta, Ana E. Sousa
Software Mentions: 3
Published: about 3 years ago
10.1186/1743-8977-9-25
Type I interferon and pattern recognition receptor signaling following particulate matter inhalation
Cited by: 12
Author(s): Aaron Erdely, James M. Antonini, Rebecca Salmen‐Muniz, Angie Liston, Tracy Hulderman, Petia P. Simeonova, Michael L. Kashon, Shengqiao Li, Ja K. Gu, Samuel Stone, Bean T. Chen, David G. Frazer, Patti C. Zeidler-Erdely
Software Mentions: 3
Published: almost 13 years ago
10.3389/pore.2021.589662
Identification of Prognostic Related Genes of Tumor Microenvironment Derived From Esophageal Cancer Patients
Cited by: 3
Author(s): Wei Yuan, Jiaqin Yan, Hongtao Liu, Ling Li, Bowen Wu, Can Guo, Mingzhi Zhang
Software Mentions: 3
Published: over 3 years ago
10.7717/peerj.7645
Yak rumen microbial diversity at different forage growth stages of an alpine meadow on the Qinghai-Tibet Plateau
Cited by: 31
Author(s): Li Ma, Shixiao Xu, Hongjin Liu, Tianwei Xu, Linyong Hu, Na Zhao, Xueping Han, Xiaoling Zhang
Software Mentions: 3
Published: about 5 years ago
10.7717/peerj.10803
The long non-coding RNA <i>MEG3</i> plays critical roles in the pathogenesis of cholesterol gallstone
Cited by: 1
Author(s): Chenyin Qian, Weiqing Qiu, Jie Zhang, Zhiyong Shen, Hua Liu, Yongjie Zhang
Software Mentions: 3
Published: almost 4 years ago
10.7717/peerj.11241
Consequences of herbal mixture supplementation on milk performance, ruminal fermentation, and bacterial diversity in water buffaloes
Cited by: 4
Author(s): Faiz‐ul Hassan, Zhengyi Tang, H. M. Ebeid, Mengwei Li, Kaiping Peng, Xin Liang, Chengjian Yang
Software Mentions: 3
Published: over 3 years ago
10.7717/peerj.11987
Characteristics of T-cell receptor repertoire of stem cell-like memory CD4+ T cells
Cited by: 2
Author(s): Shiyu Wang, Longlong Wang, Yang Liu, Yonggang Zhu, Ya Liu
Software Mentions: 3
Published: over 3 years ago
10.7717/peerj.8324
Identification of target genes in neuroinflammation and neurodegeneration after traumatic brain injury in rats
Cited by: 11
Author(s): Jianwei Zhao, Chen Xu, Heli Cao, Lin Zhang, Xuyang Wang, Shiwen Chen
Software Mentions: 3
Published: almost 5 years ago
10.7717/peerj.6939
TiO<sub>2</sub> nanoparticles affect the bacterial community structure and <i>Eisenia fetida</i> (Savigny, 1826) in an arable soil
Cited by: 12
Author(s): Katia Berenice Sánchez-López, Francisco J De Los Santos-Ramos, Selene Gómez-Acata, Marco Luna‐Guido, Yendi E. Navarro‐Noya, F. Fernández-Luqueño, Luc Dendooven
Software Mentions: 3
Published: over 5 years ago
10.7717/peerj.11145
COL1A1 is a prognostic biomarker and correlated with immune infiltrates in lung cancer
Cited by: 32
Author(s): Qishun Geng, Zhibo Shen, Lifeng Li, Jie Zhao
Software Mentions: 3
Published: over 3 years ago
10.7717/peerj.6251
Different revegetation types alter soil physical-chemical characteristics and fungal community in the Baishilazi Nature Reserve
Cited by: 26
Author(s): Jiaojiao Deng, You Yin, Jiyao Luo, Wenxu Zhu, Yongbin Zhou
Software Mentions: 3
Published: almost 6 years ago
10.7717/peerj.9453
Microenvironment-related gene TNFSF13B predicts poor prognosis in kidney renal clear cell carcinoma
Cited by: 5
Author(s): Mingzhe Jiang, Jiaxing Lin, Haotian Xing, Jing An, Jieping Yang, Biao Wang, Meng Yu, Yuyan Zhu
Software Mentions: 3
Published: over 4 years ago
10.7717/peerj.2829
Hydrogel scaffolds promote neural gene expression and structural reorganization in human astrocyte cultures
Cited by: 12
Author(s): V. Bleu Knight, Elba E. Serrano
Software Mentions: 3
Published: almost 8 years ago
10.7717/peerj.10302
Characterization and comparison of the bacterial communities of rhizosphere and bulk soils from cadmium-polluted wheat fields
Cited by: 12
Author(s): Li Song, Zhenzhi Pan, Yi Dai, Lin Chen, Li Zhang, Qilin Liao, Xi Yu, Hongyan Guo, Guisheng Zhou
Software Mentions: 3
Published: about 4 years ago
10.3390/ph14090898
RTK25: A Comprehensive Molecular Profiling Strategy in Cholangiocarcinoma Using an Integrated Bioinformatics Approach
Cited by: 4
Author(s): Brinda Balasubramanian, Simran Venkatraman, Tavan Janvilisri, Tuangporn Suthiphongchai, Siriporn Jitkaew, Jittiyawadee Sripa, Rutaiwan Tohtong
Software Mentions: 3
Published: about 3 years ago
10.1111/pbi.13111
Tea Plant Information Archive: a comprehensive genomics and bioinformatics platform for tea plant
Cited by: 177
Author(s): Enhua Xia, Fangdong Li, Wei Tong, Penghui Li, Qiong Wu, Hongxing Zhao, Ruoheng Ge, Ruopei Li, Yeyun Li, Zhengzhu Zhang, Chaoling Wei, Xiaochun Wan
Software Mentions: 3
Published: over 5 years ago
10.1093/pcp/pcaa077
Molecular and Physiological Alterations in Chickpea under Elevated CO2 Concentrations
Cited by: 14
Author(s): P. Palit, Raju Ghosh, Priya Tolani, Avijit Tarafdar, Annapurna Chitikineni, Prasad Bajaj, Mamta Sharma, Himabindu Kudapa, Rajeev K. Varshney
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pbio.3000739
Increased prostaglandin-D2 in male STAT3-deficient hearts shifts cardiac progenitor cells from endothelial to white adipocyte differentiation
Cited by: 3
Author(s): Elisabeth Stelling, Melanie Ricke‐Hoch, Sergej Erschow, Steve Hoffmann, Anke Bergmann, Maren Heimerl, Stefan Pietzsch, Karin Battmer, Alexandra Haase, Britta Stapel, Michaela Scherr, Jean‐Luc Balligand, Ofer Binah, Denise Hilfiker‐Kleiner
Software Mentions: 3
Published: almost 4 years ago
10.1371/journal.pbio.3000335
Mouse HSA+ immature cardiomyocytes persist in the adult heart and expand after ischemic injury
Cited by: 13
Author(s): Mariana Valente, Tatiana P. Resende, Diana S. Nascimento, Odile Burlen-Defranoux, Francisca Soares-da-Silva, B. Dupont, Ana Cumano, Perpétua Pinto-do-Ó
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pgen.1008603
Chromatin modifiers and recombination factors promote a telomere fold-back structure, that is lost during replicative senescence
Cited by: 5
Author(s): Tina Wagner, Lara Pérez-Martínez, René Schellhaas, Marta Barrientos-Moreno, Merve Öztürk, Félix Prado, Falk Butter, Brian Luke
Software Mentions: 3
Published: almost 4 years ago
10.1371/journal.pgen.1008941
A point mutation decouples the lipid transfer activities of microsomal triglyceride transfer protein
Cited by: 16
Author(s): Meredith H. Wilson, Sujith Rajan, Aidan Danoff, Richard White, Monica R. Hensley, Vanessa H. Quinlivan, Rosario Recacha, James H. Thierer, Frederick J. Tan, Elisabeth M Busch-Nentwich, Lloyd W. Ruddock, M. Mahmood Hussain, Steven A. Farber
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pgen.1007909
Dual role of DMXL2 in olfactory information transmission and the first wave of spermatogenesis
Cited by: 10
Author(s): Clara Gobé, Maëva Elzaïat, Nicolas Meunier, Marjolaine André, Eli Sellem, Patrice Congar, Luc Jouneau, Aurélie Allais‐Bonnet, Ikrame Naciri, Bruno Passet, Eric Pailhoux, Maëlle Pannetier
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pntd.0006280
Transcriptomes of Trypanosoma brucei rhodesiense from sleeping sickness patients, rodents and culture: Effects of strain, growth conditions and RNA preparation methods
Cited by: 27
Author(s): Julius Mulindwa, Kevin Leiss, David Ibberson, Kevin Kamanyi Marucha, Claudia Helbig, Larissa Mélo do Nascimento, Eleanor Silvester, Keith R. Matthews, Enock Matovu, John Enyaru, Christine Clayton
Software Mentions: 3
Published: almost 7 years ago
10.1371/journal.pntd.0009297
Expression profiling of Echinococcus multilocularis miRNAs throughout metacestode development in vitro
Cited by: 7
Author(s): Natalia Macchiaroli, Matías Preza, Moira Pérez, Laura Kamenetzky, Marcela Alejandra Cucher, Uriel Koziol, Estela Castillo, Matthew Berriman, Klaus Brehm, Mara Cecília Rosenzvit
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pntd.0009217
Effects and interaction of meteorological factors on hemorrhagic fever with renal syndrome incidence in Huludao City, northeastern China, 2007–2018
Cited by: 12
Author(s): Wanwan Sun, Xiaobo Liu, Li Ming Wen, Zhiyuan Mao, Jimin Sun, Liang Lu
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0047833
Metabolic Profiling Reveals Sphingosine-1-Phosphate Kinase 2 and Lyase as Key Targets of (Phyto-) Estrogen Action in the Breast Cancer Cell Line MCF-7 and Not in MCF-12A
Cited by: 22
Author(s): Nadja Engel, Jan Lisec, Birgit Piechulla, Barbara Nebe
Software Mentions: 3
Published: about 12 years ago
10.1371/journal.pone.0234029
An investigation into the beneficial effects and molecular mechanisms of humic acid on foxtail millet under drought conditions
Cited by: 8
Author(s): Jie Shen, Meijun Guo, Yuguo Wang, Xiangyang Yuan, Shuqi Dong, Xi-e Song, Peng Guo
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0157937
Comorbid Analysis of Genes Associated with Autism Spectrum Disorders Reveals Differential Evolutionary Constraints
Cited by: 20
Author(s): Maude M. David, David Enard, Alp Ozturk, Jena Daniels, Ji Ye Jung, Leticia Díaz-Beltrán, Dennis P. Wall
Software Mentions: 3
Published: over 8 years ago
10.1371/journal.pone.0253701
Exposure to dexamethasone modifies transcriptomic responses of free-living stages of Strongyloides stercoralis
Cited by: 3
Author(s): Rutchanee Rodpai, Oranuch Sanpool, Tongjit Thanchomnang, Pokkamol Laoraksawong, Lakkhana Sadaow, Patcharaporn Boonroumkaew, Arporn Wangwiwatsin, Chaisiri Wongkham, Porntip Laummaunwai, Wannaporn Ittiprasert, Paul J Brindley, Pewpan M. Intapan, Wanchai Maleewong
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0253219
Identify specific gene pairs for subarachnoid hemorrhage based on wavelet analysis and genetic algorithm
Cited by: 0
Author(s): Pengcheng Zhao, Shaonian Xu, Zhenshan Huang, Peng Deng, Yongming Zhang
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0181761
The integrated analysis of RNA-seq and microRNA-seq depicts miRNA-mRNA networks involved in Japanese flounder (Paralichthys olivaceus) albinism
Cited by: 12
Author(s): Na Wang, Ruoqing Wang, Renkai Wang, Yongsheng Tian, Changwei Shao, Xiaodong Jia, Songlin Chen
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pone.0242030
dagLogo: An R/Bioconductor package for identifying and visualizing differential amino acid group usage in proteomics data
Cited by: 10
Author(s): Jianhong Ou, Haibo Li, Niraj K. Nirala, Alexey Stukalov, Usha Acharya, Michael R. Green, Lihua Julie Zhu
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pone.0234893
Nutritional combinatorial impact on the gut microbiota and plasma short-chain fatty acids levels in the prevention of mammary cancer in Her2/neu estrogen receptor-negative transgenic mice
Cited by: 16
Author(s): Manvi Sharma, Itika Arora, Matthew L. Stoll, Yuanyuan Li, Casey D. Morrow, Stephen Barnes, Taylor F. Berryhill, Shizhao Li, Trygve O. Tollefsbol
Software Mentions: 3
Published: almost 4 years ago
10.1371/journal.pone.0249375
MiRNA-107 enhances the malignant progression of pancreatic cancer by targeting TGFBR3
Cited by: 11
Author(s): Tingke Tian, Qingmei Yang, Cuijuan Zhang, Xiaokun Li, Jiancheng Cheng
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0241924
Identification of a 6-gene signature for the survival prediction of breast cancer patients based on integrated multi-omics data analysis
Cited by: 7
Author(s): Wenju Mo, Yuqin Ding, Shuai Zhao, Dayang Zou, Xiaowen Ding
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pone.0242263
Identification of prognostic genes in uveal melanoma microenvironment
Cited by: 23
Author(s): Huan Luo, Chi Ma
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pone.0210650
LncRNA expression profile and ceRNA analysis in tomato during flowering
Cited by: 24
Author(s): Zhenchao Yang, Chengcheng Yang, Zhengyan Wang, Yang Zhao, Danyan Chen, Yongjun Wu
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pone.0188082
Global analysis of gene expression mediated by OX1 orexin receptor signaling in a hypothalamic cell line
Cited by: 4
Author(s): Eric Koesema, Thomas Kodadek
Software Mentions: 3
Published: about 7 years ago
10.1371/journal.pone.0160331
Differential Analysis of the Nasal Microbiome of Pig Carriers or Non-Carriers of Staphylococcus aureus
Cited by: 27
Author(s): Carmen Espinosa-Gongora, Niels Larsen, Kristian Schønning, Merete Fredholm, Luca Guardabassi
Software Mentions: 3
Published: over 8 years ago
10.1371/journal.pone.0248430
High mutation burden in the checkpoint and micro-RNA processing genes in myelodysplastic syndrome
Cited by: 5
Author(s): Ivan S. Moiseev, Nikolai Tsvetkov, Ildar Barkhatov, Maria V. Barabanshikova, Dmitrii S. Bug, Natalya Vitalievna Petuhova, Артем Тишков, Evgeny Bakin, Е. А. Измайлова, Alena I. Shakirova, Alexander Kulagin, Elena Morozova
Software Mentions: 3
Published: over 3 years ago
10.3390/cancers13112619
AID Contributes to Accelerated Disease Progression in the TCL1 Mouse Transplant Model for CLL
Cited by: 5
Author(s): Maria Schubert, Franz Josef Gassner, Michael Huemer, Jan Philip Höpner, Е. В. Акимова, Markus J. Steiner, Alexander Egle, Richard Greil, Nadja Zaborsky, Roland Geisberger
Software Mentions: 3
Published: over 3 years ago
10.3390/cancers13112771
Involvement of Neutrophils in Metastatic Evolution of Pancreatic Neuroendocrine Tumors
Cited by: 4
Author(s): Véronique Debien, Guillaume Davidson, Philippe Baltzinger, Jean‐Emmanuel Kurtz, François Séverac, Alessio Impériale, Patrick Pessaux, Pietro Addeo, Philippe Bachellier, Xiaoping Su, Irwin Davidson, Marie-Pierrette Chenard, B. Goichot, Gabriel G. Malouf
Software Mentions: 3
Published: over 3 years ago
10.3390/cancers13092161
Low Plasma Citrate Levels and Specific Transcriptional Signatures Associated with Quiescence of CD34+ Progenitors Predict Azacitidine Therapy Failure in MDS/AML Patients
Cited by: 1
Author(s): Pavla Kořalková, Monika Beličková, David Kundrát, Michaela Dostálová Merkerová, Zdeněk Krejčík, Katarína Szikszai, Monika Kaisrlikova, Jitka Veselá, Pavla Vyhlidalova, Jan Stetka, Alžběta Hlaváčková, Jiřı́ Suttnar, Patrik Flodr, J Stříteský, Anna Jonášová, Jaroslav Čermák, Vladimír Divoký
Software Mentions: 3
Published: over 3 years ago
10.3390/cancers12123685
Angiogenesis-Related Gene Expression Signatures Predicting Prognosis in Gastric Cancer Patients
Cited by: 24
Author(s): Haoyu Ren, Jiang Zhu, Haochen Yu, Alexandr V. Bazhin, C. Benedikt Westphalen, Bernhard W. Renz, Sven Jacob, Christopher Lampert, Jens Werner, Martin K. Angele, Florian Bösch
Software Mentions: 3
Published: almost 4 years ago
10.3390/cancers13102499
Expression of Cancer Testis Antigens in Tumor-Adjacent Normal Liver Is Associated with Post-Resection Recurrence of Hepatocellular Carcinoma
Cited by: 3
Author(s): Lisanne Noordam, Zhouhong Ge, Hadiye Özturk, Michail Doukas, Shanta Mancham, Patrick P.C. Boor, Lucia Campos Carrascosa, Guoying Zhou, Thierry van den Bosch, Qiuwei Pan, Jan N.M. IJzermans, Marco J. Bruno, Dave Sprengers, Jaap Kwekkeboom
Software Mentions: 3
Published: over 3 years ago
10.3390/cancers13071585
Aberrations of Chromosomes 1 and 16 in Breast Cancer: A Framework for Cooperation of Transcriptionally Dysregulated Genes
Cited by: 8
Author(s): Anna Privitera, Vincenza Barresi, D. F. Condorelli
Software Mentions: 3
Published: over 3 years ago
10.1186/s12964-020-00579-w
Autophagy suppression of trophoblast cells induces pregnancy loss by activating decidual NK cytotoxicity and inhibiting trophoblast invasion
Cited by: 40
Author(s): Hai-Xia Tan, Shao‐Liang Yang, Ming‐Qing Li, Haiyan Wang
Software Mentions: 3
Published: over 4 years ago
10.1038/s41419-020-02769-3
LEF1 mediates osteoarthritis progression through circRNF121/miR-665/MYD88 axis via NF-кB signaling pathway
Cited by: 31
Author(s): Tianfu Wang, Zhiyu Hao, Changcheng Liu, Lebin Yuan, Li Li, Menghong Yin, Qing Li, Zhiming Qi, Zi Wang
Software Mentions: 3
Published: over 4 years ago
10.1038/s41419-020-03181-7
Calcium and TRPV4 promote metastasis by regulating cytoskeleton through the RhoA/ROCK1 pathway in endometrial cancer
Cited by: 53
Author(s): Xingchen Li, Yuan Cheng, Zhiqi Wang, Jingyi Zhou, Yuanyuan Jia, Xijing He, Lijun Zhao, Yangyang Dong, Fan Yuan, Xiao Yang, Boqiang Shen, Xiangsong Wu, Jiaqi Wang, Chunyang Xiong, Lihui Wei
Software Mentions: 3
Published: about 4 years ago
10.1016/j.tcsw.2021.100052
Biochemical and phenotypic characterisation of the Mycobacterium smegmatis transporter UspABC
Cited by: 0
Author(s): Magdalena Karlikowska, Ajit Singh, Apoorva Bhatt, Sascha Ott, Andrew R. Bottrill, Gurdyal S. Besra, Elizabeth Fullam
Software Mentions: 3
Published: almost 3 years ago
10.3390/cells9112484
Quick, Coordinated and Authentic Reprogramming of Ribosome Biogenesis during iPSC Reprogramming
Cited by: 5
Author(s): Kejin Hu
Software Mentions: 3
Published: about 4 years ago
10.1186/s13148-020-00925-2
Loss-of-function maternal-effect mutations of PADI6 are associated with familial and sporadic Beckwith-Wiedemann syndrome with multi-locus imprinting disturbance
Cited by: 37
Author(s): Maria Vittoria Cubellis, Laura Pignata, Ankit Verma, Ángela Sparago, Rosita Del Prete, Maria Monticelli, Luciano Calzari, Vincenzo Antona, Daniela Melis, Romano Tenconi, Silvia Russo, Flavia Cerrato, Andrea Riccio
Software Mentions: 3
Published: about 4 years ago
10.1186/s13148-020-0811-1
Methylome and transcriptome analyses reveal insights into the epigenetic basis for the good survival of hypomethylated ER-positive breast cancer subtype
Cited by: 4
Author(s): Xiao-qiong Chen, Fan Zhang, Qichen Su, Chi Zeng, Fu-Hui Xiao, Yu Peng
Software Mentions: 3
Published: almost 5 years ago
10.1007/s00784-016-1980-3
The mycobiome of root canal infections is correlated to the bacteriome
Cited by: 52
Author(s): I.F. Persoon, M.J. Buijs, A.R. Özok, Wim Crielaard, Bastiaan P. Krom, Egija Zaura, Bernd W. Brandt
Software Mentions: 3
Published: about 8 years ago
10.1038/s42003-019-0665-2
Transcription factor Znf2 coordinates with the chromatin remodeling SWI/SNF complex to regulate cryptococcal cellular differentiation
Cited by: 18
Author(s): Jianfeng Lin, Youbao Zhao, Aileen R Ferraro, Ence Yang, Zachary A. Lewis, Xiaorong Lin
Software Mentions: 3
Published: about 5 years ago
10.1038/s42003-021-01846-3
Endothelial Jak3 expression enhances pro-hematopoietic angiocrine function in mice
Cited by: 8
Author(s): José Gabriel Barcia Durán, Tyler M. Lu, Sean Houghton, Fuqiang Geng, Ryan Schreiner, Jenny Xiang, Shahin Rafii, David Redmond, Raphaël Lis
Software Mentions: 3
Published: over 3 years ago
10.1155/2020/8183420
Weighed Gene Coexpression Network Analysis Screens the Potential Long Noncoding RNAs and Genes Associated with Progression of Coronary Artery Disease
Cited by: 6
Author(s): Lang Wang, Jun Hu, Jiali Zhou, Fan Guo, Yong Tan, Liang Zhang
Software Mentions: 3
Published: over 4 years ago
10.1155/2020/2018214
Construction and Comprehensive Analysis of Dysregulated Long Noncoding RNA-Associated Competing Endogenous RNA Network in Moyamoya Disease
Cited by: 2
Author(s): Xuefeng Gu, Da-Quan Jiang, Yanwen Yang, Peng Zhang, Guoqing Wan, Wangxian Gu, Junfeng Shi, Liying Jiang, Bing Chen, Yanjun Zheng, Dingsheng Liu, Shu Guo, Changlian Lu
Software Mentions: 3
Published: over 4 years ago
10.1016/j.csbj.2020.03.022
Full-length transcriptome sequencing provides insights into the evolution of apocarotenoid biosynthesis in Crocus sativus
Cited by: 28
Author(s): Junyang Yue, Ran Wang, Xiaojing Ma, Jiayi Liu, Xiaohui Lu, Sambhaji Balaso Thakar, Ning An, Jia Liu, Enhua Xia, Yongsheng Liu
Software Mentions: 3
Published: almost 5 years ago
10.1186/s13054-020-03410-7
Peripheral blood transcriptomic sub-phenotypes of pediatric acute respiratory distress syndrome
Cited by: 16
Author(s): Nadir Yehya, Brian M. Varisco, Neal J. Thomas, Hector R. Wong, Jason D. Christie, Rui Feng
Software Mentions: 3
Published: almost 4 years ago
10.3390/diagnostics10050263
The Influence of Methylating Mutations on Acute Myeloid Leukemia: Preliminary Analysis on 56 Patients
Cited by: 3
Author(s): Sergiu Pașca, Cristina Turcas, Ancuța Jurj, Patric Teodorescu, Sabina Iluta, Ionut Hotea, Anca Bojan, Cristina Selicean, Bogdan Fetică, Bobe Petrushev, Vlad Moisoiu, Alina-Andreea Zimța, Valentina Sas, Cătălin Constantinescu, Dumitru Zdrenghea, Delia Dima, Ciprian Tomuleasa
Software Mentions: 3
Published: over 4 years ago
10.1155/2019/7049294
Identification of Key Pathways and Genes in the Orai2 Mediated Classical and Mesenchymal Subtype of Glioblastoma by Bioinformatic Analyses
Cited by: 11
Author(s): Feng Yuan, Yi Li, Hai Long, Yingshuai Wang, Yihan Yang, Tao Li, Luqing Tong, Haiwen Ma, Peidong Liu, Haolang Ming, Biao Ren, Shukun Yu, Yu Lin, Xuejun Yang
Software Mentions: 3
Published: about 5 years ago
10.1155/2020/8867019
Development of an Autophagy Score Signature for Predicting Overall Survival in Papillary Renal Cell Carcinoma
Cited by: 2
Author(s): Xiang Gu, Xiaojun Chen, Lei Zhu, Wenbo Song, Ali Wang, Junfeng Chu, Tao Wang, Peng Jiang, Yuxiang Ge
Software Mentions: 3
Published: about 4 years ago
10.3389/fcimb.2020.615876
Niche-Specific Adaptive Evolution of Lactobacillus plantarum Strains Isolated From Human Feces and Paocai
Cited by: 10
Author(s): Qiqi Pan, Shi Cen, Leilei Yu, Fengwei Tian, Hao Zhang, Qixiao Zhai
Software Mentions: 3
Published: almost 4 years ago
10.3389/fcimb.2020.608298
Analysis of Long Non-Coding RNA in Cryptosporidium parvum Reveals Significant Stage-Specific Antisense Transcription
Cited by: 18
Author(s): Yiran Li, Rodrigo P. Baptista, Adam Sateriale, Boris Striepen, Jessica C. Kissinger
Software Mentions: 3
Published: almost 4 years ago
10.3389/fncel.2018.00528
Identification of Altered Developmental Pathways in Human Juvenile HD iPSC With 71Q and 109Q Using Transcriptome Profiling
Cited by: 24
Author(s): Karolina Świtońska, Wojciech J. Szlachcic, Luiza Handschuh, Paweł Wojciechowski, Łukasz Marczak, Michał Stelmaszczuk, Marek Figlerowicz, Maciej Figiel
Software Mentions: 3
Published: almost 6 years ago
10.3389/fncel.2018.00352
IFN-γ Producing Th1 Cells Induce Different Transcriptional Profiles in Microglia and Astrocytes
Cited by: 22
Author(s): Chittappen Kandiyil Prajeeth, Oliver Dittrich‐Breiholz, Steven R. Talbot, Philippe A. Robert, Jochen Huehn, Martin Stangel
Software Mentions: 3
Published: about 6 years ago
10.3389/fgene.2019.00373
Identification of Potential Crucial Genes Associated With the Pathogenesis and Prognosis of Endometrial Cancer
Cited by: 45
Author(s): Li Liu, Jiajing Lin, Haiyang He
Software Mentions: 3
Published: over 5 years ago
10.3389/fgene.2019.00561
Genome-Wide Identification and Homoeologous Expression Analysis of PP2C Genes in Wheat (Triticum aestivum L.)
Cited by: 44
Author(s): Xiao‐Lan Yu, Jiapeng Han, Efan Wang, Jie Xiao, Rui Hu, Guangxiao Yang, Guoqing He
Software Mentions: 3
Published: over 5 years ago
10.3389/fgene.2020.589076
Identification of mRNAs and lncRNAs Involved in the Regulation of Follicle Development in Goat
Cited by: 7
Author(s): Zhifeng Zhao, Xian Zou, Tingting Lu, Ming Deng, Yaokun Li, Yongqing Guo, Baoli Sun, Guangbin Liu, Dewu Liu
Software Mentions: 3
Published: almost 4 years ago
10.3389/fgene.2021.648158
Identification and Comparative Analysis of Long Non-coding RNAs in High- and Low-Fecundity Goat Ovaries During Estrus
Cited by: 3
Author(s): Yaokun Li, Xiangping Xu, Ming Deng, Xian Zou, Zhifeng Zhao, Sixiu Huang, Dewu Liu, Guangbin Liu
Software Mentions: 3
Published: over 3 years ago
10.3389/fgene.2019.01045
Population Genetic Analysis of Modern and Ancient DNA Variations Yields New Insights Into the Formation, Genetic Structure, and Phylogenetic Relationship of Northern Han Chinese
Cited by: 25
Author(s): Pengyu Chen, Jian Wu, Li Luo, Hongyan Gao, Mengge Wang, Xing Zou, Yingxiang Li, Chen Gang, Haibo Luo, Limei Yu, Yanyan Han, Jia Fu, Guanglin He
Software Mentions: 3
Published: about 5 years ago
10.3389/fgene.2021.583568
Aberrantly DNA Methylated-Differentially Expressed Genes in Pancreatic Cancer Through an Integrated Bioinformatics Approach
Cited by: 4
Author(s): Haifeng Sun, Rui Xin, Changjun Zheng, Ge Huang
Software Mentions: 3
Published: over 3 years ago
10.3389/fgene.2020.586814
Differential Expression and Bioinformatics Analysis of circRNA in Non-small Cell Lung Cancer
Cited by: 21
Author(s): Qian Sun, Xia Li, Muchen Xu, Li Zhang, Haiwei Zuo, Yong Xin, Longzhen Zhang, Ping Gong
Software Mentions: 3
Published: about 4 years ago
10.3389/fgene.2020.594824
The Active Constituent From Gynostemma Pentaphyllum Prevents Liver Fibrosis Through Regulation of the TGF-β1/NDRG2/MAPK Axis
Cited by: 8
Author(s): Hui Huang, Kuifeng Wang, Qian Liu, Feihong Ji, Hu Zhou, Shanhua Fang, Jiansheng Zhu
Software Mentions: 3
Published: about 4 years ago
10.3389/fgene.2020.589326
Temporospatial Flavonoids Metabolism Variation in Ginkgo biloba Leaves
Cited by: 17
Author(s): Ying Guo, Tongli Wang, Fangfang Fu, Guibin Wang
Software Mentions: 3
Published: about 4 years ago
10.3389/fgene.2020.00701
Chromosome Level Genome Assembly of Andrographis paniculata
Cited by: 11
Author(s): Ying Liang, Shanshan Chen, Kunhua Wei, Zijiang Yang, Shengchang Duan, Yihui Du, Peng Qu, Miao Jin, Wei Chen, Yang Dong
Software Mentions: 3
Published: over 4 years ago
10.3389/fgene.2021.703210
Identification and Validation of a PPP1R12A-Related Five-Gene Signature Associated With Metabolism to Predict the Prognosis of Patients With Prostate Cancer
Cited by: 3
Author(s): Zhihao Zou, Ren Liu, Yingke Liang, Rui Zhou, Qi-Shan Dai, Zhengxue Han, Minyao Jiang, Yangjia Zhuo, Yixun Zhang, Yuanfa Feng, Xinwen Zhu, Shanghua Cai, Jundong Lin, Zhenfeng Tang, Weide Zhong, Yu‐Xiang Liang
Software Mentions: 3
Published: over 3 years ago
10.3389/fgene.2021.619056
Dynamic Transcriptome Sequencing of Bovine Alphaherpesvirus Type 1 and Host Cells Carried Out by a Multi-Technique Approach
Cited by: 5
Author(s): Dóra Tombácz, Norbert Moldován, Gábor Torma, Tibor Nagy, Ákos Hornyák, Zsolt Csabai, Gábor Gulyás, Miklós Boldogkői, Victoria A Jefferson, Zoltán Zádori, Florencia Meyer, Zsolt Boldogköi
Software Mentions: 3
Published: over 3 years ago
10.3389/fgene.2021.665173
Identification and Validation of a Novel RNA-Binding Protein-Related Gene-Based Prognostic Model for Multiple Myeloma
Cited by: 6
Author(s): Wei Wang, Shiwen Xu, Xia-Yin Zhu, Qixin Guo, Min Zhu, Xin-Li Mao, Yahong Chen, Shaowei Li, Wenda Luo
Software Mentions: 3
Published: over 3 years ago
10.3389/fgene.2019.00786
Specific Glioma Prognostic Subtype Distinctions Based on DNA Methylation Patterns
Cited by: 15
Author(s): Xueran Chen, Chenggang Zhao, Zhiyang Zhao, Hongzhi Wang, Zhiyou Fang
Software Mentions: 3
Published: about 5 years ago
10.3389/fgene.2020.00727
Integrative Bioinformatics Approaches to Screen Potential Prognostic Immune-Related Genes and Drugs in the Cervical Cancer Microenvironment
Cited by: 14
Author(s): Zitong Zhao, Jigang Li, He Li, Na-Yi Yuan Wu, Peilin Ouyang, Shan Liu, Jifeng Cai, Jing Wang
Software Mentions: 3
Published: over 4 years ago
10.3389/fgene.2020.610682
Single-Cell RNA Sequencing of Tocilizumab-Treated Peripheral Blood Mononuclear Cells as an in vitro Model of Inflammation
Cited by: 5
Author(s): Arya Zarinsefat, George C. Hartoularos, Dmitry Rychkov, Priyanka Rashmi, Sindhu Chandran, Flavio Vincenti, Chun J. Yee, Minnie M. Sarwal
Software Mentions: 3
Published: almost 4 years ago
10.3389/fgene.2021.741325
Multiomics Analysis Reveals the Prognostic Non-tumor Cell Landscape in Glioblastoma Niches
Cited by: 0
Author(s): Zixuan Xiao, Wei Zhang, Guanzhang Li, Wendong Li, Liang-In Lin, Taixiang Sun, Yufei He, Guang Liu, Lu Wang, Xiaohan Han, Hao Wen, Yong Liu, Yifan Chen, Haoyu Wang, Jing Li, Yubo Fan, Jing Zhang
Software Mentions: 3
Published: about 3 years ago
10.3389/fgene.2021.564780
Distinct Extracellular RNA Profiles in Different Plasma Components
Cited by: 8
Author(s): Jing Jia, Shangdong Yang, Jinyong Huang, Hong Zheng, Ying He, Liang Wang
Software Mentions: 3
Published: over 3 years ago