cran: pheatmap | Projects | Ecosyste.ms: Papers

10.1186/s12935-020-01351-3

Exploring TCGA database for identification of potential prognostic genes in stomach adenocarcinoma
Cited by: 22
Author(s): Lin Zhou, Wei Huang, Hefen Yu, Yajuan Feng, Xu Teng
Software Mentions: 3
Published: about 6 years ago

10.1186/s12935-021-02174-6

Carcinogenic effect of adenylosuccinate lyase (ADSL) in prostate cancer development and progression through the cell cycle pathway
Cited by: 3
Author(s): Jinling Liao, Qiong Song, Jie Li, Kechen Du, Chen Yang, Chunlin Zou, Zengnan Mo
Software Mentions: 3
Published: about 5 years ago

10.20892/j.issn.2095-3941.2020.0648

A nomogram-based immune-serum scoring system predicts overall survival in patients with lung adenocarcinoma
Cited by: 5
Author(s): Qun Huang, Tongyuan Qu, Lisha Qi, Changxu Liu, Yuhong Guo, Qian Guo, Guangning Li, Yalei Wang, Wenshuai Zhang, Wei Zhao, Danyang Ren, Leina Sun, Shengguang Wang, Bin Meng, Bei Sun, Bin Zhang, Wenjuan Ma, Weijun Cao
Software Mentions: 3
Published: over 5 years ago

10.1186/s13058-020-01277-8

Glucocorticoid receptors are required effectors of TGFβ1-induced p38 MAPK signaling to advanced cancer phenotypes in triple-negative breast cancer
Cited by: 25
Author(s): Carlos Perez Kerkvliet, Amy R. Dwyer, Caroline H. Diep, Robert H. Oakley, Christopher Liddle, John A. Cidlowski, Carol A. Lange
Software Mentions: 3
Published: over 6 years ago

10.3390/ijms22052282

The RNAi Mechanism Regulates a New Exonuclease Gene Involved in the Virulence of Mucorales
Cited by: 8
Author(s): Carlos Pèrez-Arques, María Isabel Navarro-Mendoza, Laura Murcia, Eusebio Navarro, Victoriano Garre
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms22052442

Immunogenomic Identification for Predicting the Prognosis of Cervical Cancer Patients
Cited by: 10
Author(s): Qun Wang, Aurelia Vattai, Theresa� Vilsmaier, Till Kaltofen, Alexander Steger, Doris Mayr, Sven Mahner, Udo Jeschke, H Heidegger
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-91373-2

Transcriptome profiling analysis of muscle tissue reveals potential candidate genes affecting water holding capacity in Chinese Simmental beef cattle
Cited by: 4
Author(s): Lili Du, Tianpeng Chang, Bingxing An, Mang Liang, Xinghai Duan, Wentao Cai, Bo Zhu, Xue Gao, Yan Chen, Lingyang Xu, Lupei Zhang, Junya Li, Huijiang Gao
Software Mentions: 3
Published: over 5 years ago

10.1590/1414-431X20198333

Screening potential prognostic biomarkers of long non-coding RNAs for predicting the risk of chronic kidney disease
Cited by: 11
Author(s): Na Li, Yan Cui, Min Yin, Feng Liu
Software Mentions: 3
Published: over 7 years ago

10.3390/brainsci10060360

Migraine Frequency Decrease Following Prolonged Medical Cannabis Treatment: A Cross-Sectional Study
Cited by: 15
Author(s): Joshua Aviram, Yelena Vysotski, Paula Berman, Gil M. Lewitus, Elon Eisenberg, David Meiri
Software Mentions: 3
Published: about 6 years ago

10.1186/s13568-020-00984-x

Diversity of active root-associated methanotrophs of three emergent plants in a eutrophic wetland in northern China
Cited by: 15
Author(s): Jiahe Cui, Ji Zhao, Zheng Wang, Weiwei Cao, Shaohua Zhang, Jumei Liu, Zhihua Bao
Software Mentions: 3
Published: over 6 years ago

10.1038/s41416-019-0659-3

Kinetic modelling of quantitative proteome data predicts metabolic reprogramming of liver cancer
Cited by: 14
Author(s): Nikolaus Berndt, Antje Egners, Guido Mastrobuoni, Olga Vvedenskaya, Athanassios Fragoulis, Aurélien Dugourd, Sascha Bulik, Matthias Pietzke, Chris Bielow, Rob J. J. van Gassel, Steven W. M. Olde Damink, Merve Erdem, Julio Sáez-Rodríguez, Hermann‐Georg Holzhütter, Stefan Kempa, Thorsten Cramer
Software Mentions: 3
Published: over 6 years ago

10.1186/s12920-021-00971-6

Bioinformatic identification of hub genes and related transcription factors in low shear stress treated endothelial cells
Cited by: 2
Author(s): Yang Yang, Xiangshan Xu
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-59469-3

Targeting Oncogenic Super Enhancers in MYC-Dependent AML Using a Small Molecule Activator of NR4A Nuclear Receptors
Cited by: 18
Author(s): S. Greg Call, Ryan P. Duren, Anil K. Panigrahi, Huu Lam Nguyen, Pablo R. Freire, Sandra L. Grimm, Cristian Coarfa, Orla M. Conneely
Software Mentions: 3
Published: over 6 years ago

10.1038/s41416-019-0572-9

Aberrations in Notch-Hedgehog signalling reveal cancer stem cells harbouring conserved oncogenic properties associated with hypoxia and immunoevasion
Cited by: 30
Author(s): Wai Hoong Chang, Alvina G. Lai
Software Mentions: 3
Published: almost 7 years ago

10.3389/fcell.2021.594640

Overexpression of Long Non-coding RNA 4933425B07Rik Causes Urinary Malformations in Mice
Cited by: 2
Author(s): Lihong Tan, Minghui Yu, Yaxin Li, Shanshan Xue, Jing Chen, Yihui Zhai, Xiaoyan Fang, Jialu Liu, Jiaojiao Liu, Xiaohui Wu, Hong Xu, Qian Shen
Software Mentions: 3
Published: over 5 years ago

10.3389/fcell.2020.582282

Increased Expression of Zyxin and Its Potential Function in Androgenetic Alopecia
Cited by: 5
Author(s): Qingmei Liu, Xiaofeng Shi, Yue Zhang, Yan Huang, Kai Yang, Yulong Tang, Yanyun Ma, Yuting Zhang, Ji'an Wang, Li Zhang, Qi Zhang, Lei Xiao, Jinran Lin, Jiucun Wang, Wenyu Wu
Software Mentions: 3
Published: over 5 years ago

10.1038/bcj.2017.86

Meis2 as a critical player in MN1-induced leukemia
Cited by: 15
Author(s): Courteney K. Lai, Gudmundur L. Norddahl, Tobias Maetzig, Patty Rosten, Tanner Lohr, Lea Sanchez Milde, Niklas von Krosigk, T. Roderick Docking, Michael Heuser, Aly Karsan, R. Keith Humphries
Software Mentions: 3
Published: almost 9 years ago

10.1038/s41598-021-90583-y

Identification of Nrf2-responsive microRNA networks as putative mediators of myocardial reductive stress
Cited by: 13
Author(s): Justin M. Quiles, Mark E Pepin, Sini Sunny, Sandeep Shelar, Anil K. Challa, Brian Dalley, John R. Hoidal, Steven M. Pogwizd, Adam R. Wende, Namakkal S. Rajasekaran
Software Mentions: 3
Published: over 5 years ago

10.1186/s13068-021-01880-7

CRISPRi screens reveal genes modulating yeast growth in lignocellulose hydrolysate
Cited by: 14
Author(s): Friederike Gutmann, Cosimo Jann, Filipa Pereira, Anders Johansson, Lars M. Steinmetz, Kiran Raosaheb Patil
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-74540-9

Transcriptome analysis of alternative splicing in the pathogen life cycle in human foreskin fibroblasts infected with Trypanosoma cruzi
Cited by: 4
Author(s): Hyeim Jung, Seonggyun Han, Younghee Lee
Software Mentions: 3
Published: almost 6 years ago

10.1186/s13068-017-0705-4

Identification and characterization of the glucose dual-affinity transport system in Neurospora crassa: pleiotropic roles in nutrient transport, signaling, and carbon catabolite repression
Cited by: 49
Author(s): Bang Wang, Jingen Li, Jingfang Gao, Pengli Cai, Xiao Han, Chaoguang Tian
Software Mentions: 3
Published: over 9 years ago

10.1186/s13068-020-01728-6

Deciphering the transcriptional regulatory networks that control size, color, and oil content in Brassica rapa seeds
Cited by: 21
Author(s): Yue Niu, Limin Wu, Yànhuá Lǐ, Hualei Huang, Mingchao Qian, Wei Sun, Hong Zhu, Yingying Xu, Yonghai Fan, Umer Mahmood, Benbo Xu, Kai Zhang, Cunmin Qu, Jiana Li, Kun Lu
Software Mentions: 3
Published: over 6 years ago

10.1186/s13068-021-02018-5

CAZymes from the thermophilic fungus Thermoascus aurantiacus are induced by C5 and C6 sugars
Cited by: 5
Author(s): Raphael Gabriel, Rebecca C. Mueller, Lena Floerl, Cynthia Hopson, Simon Harth, Timo Schuerg, André Fleißner, Steven W. Singer
Software Mentions: 3
Published: about 5 years ago

10.1042/BSR20200214

Dipeptidyl peptidase like 6 promoter methylation is a potential prognostic biomarker for pancreatic ductal adenocarcinoma
Cited by: 5
Author(s): Xin Zhao, Di Cao, Zhiwei Ren, Zhe Liu, Shaocheng Lv, Jun Zhu, Lixin Li, Ren Lang, Qiang He
Software Mentions: 3
Published: about 6 years ago

10.1042/BSR20191139

Comprehensive analysis of long noncoding RNA and mRNA in five colorectal cancer tissues and five normal tissues
Cited by: 4
Author(s): Zhenxu Zhou, Xiaoming Chen, Yuqi Zhang, Peng Liu, Xiangyang Xue, Guoxin Li
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-61688-7

Prognostic implications of EGFR protein expression in sporadic colorectal tumors: Correlation with copy number status, mRNA levels and miRNA regulation
Cited by: 15
Author(s): Sofía Del Carmen, Luis A. Corchete, Ruth Gervás, A Barrio Rodriguez, María José García, José A. Sánchez Alcázar, José María Sánchez García, Óscar Bengoechea, Luís Muñoz-Bellvis, José María Sayagués, Mónica Viñarás Abad
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2018.02023

Vertical Distribution of Microbial Eukaryotes From Surface to the Hadal Zone of the Mariana Trench
Cited by: 34
Author(s): Zhimeng Xu, Min Wang, Wenxue Wu, Yifan Li, Qian Liu, Yuye Han, Hongbing Shao, Andrew McMinn, Hongbin Liu
Software Mentions: 3
Published: about 8 years ago

10.1042/BSR20210495

RNA sequencing reveals potential interacting networks between the altered transcriptome and ncRNome in the skeletal muscle of diabetic mice
Cited by: 5
Author(s): Devesh Kesharwani, Amit Kumar, M. Damodara Poojary, Vinod Scaria, Malabika Datta
Software Mentions: 3
Published: about 5 years ago

10.1042/BSR20202463

Explore prognostic biomarker of bladder cancer based on competing endogenous network
Cited by: 6
Author(s): Faping Li, Hui Guo, Bin Liu, Nian Liu, Zhixiang Xu, Yishu Wang, Honglan Zhou
Software Mentions: 3
Published: almost 6 years ago

10.1042/BSR20202921

Immune-associated biomarkers for early diagnosis of Parkinson’s disease based on hematological lncRNA–mRNA co-expression
Cited by: 8
Author(s): Kecheng Lei, Liwen Zhang, Yijing He, Hui Sun, Weifang Tong, Yawei Xu, Lingjing Jin
Software Mentions: 3
Published: almost 6 years ago

10.1186/s40478-018-0636-8

Forced turnover of aged microglia induces an intermediate phenotype but does not rebalance CNS environmental cues driving priming to immune challenge
Cited by: 91
Author(s): Shane O'Neil, Kristina G. Witcher, Daniel B. McKim, Jonathan P. Godbout
Software Mentions: 3
Published: almost 8 years ago

10.18632/aging.101541

Comprehensive analysis of circRNA expression pattern and circRNA-miRNA-mRNA network in the pathogenesis of atherosclerosis in rabbits
Cited by: 129
Author(s): Feng Zhang, Ruyou Zhang, Xiaoyu Zhang, Yingnan Wu, Xiaoying Li, Shuang Zhang, Wen-ying Hou, Yu Ding, Jiawei Tian, Lei Sun, Xiangdong Kong
Software Mentions: 3
Published: about 8 years ago

10.3390/ijms22147298

Reprogramming mRNA Expression in Response to Defect in RNA Polymerase III Assembly in the Yeast Saccharomyces cerevisiae
Cited by: 1
Author(s): Izabela Rudzińska, Małgorzata Cieśla, Tomasz W. Turowski, Alicja Armatowska, Ewa Leśniewska, Magdalena Boguta
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-021-90944-7

Identification of Small Molecule Inhibitors of a Mir155 Transcriptional Reporter in Th17 Cells
Cited by: 2
Author(s): Anju Singh, Myagmarjav Dashynam, Bryan Chim, Thelma M. Escobar, Xiuhuai Liu, Xin Hu, Samarjit Patnaik, Xin Xu, Noel Southall, Juan Marugán, Ajit Jadhav, Vanja Lazarevic, Stefan A. Muljo, Marc Ferrer
Software Mentions: 3
Published: over 5 years ago

10.1042/BSR20200790

Identification of feature autophagy-related genes in patients with acute myocardial infarction based on bioinformatics analyses
Cited by: 4
Author(s): Yajuan Du, Enfa Zhao, Yushun Zhang
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-020-63148-8

Comprehensive immunogenomic landscape analysis of prognosis-related genes in head and neck cancer
Cited by: 22
Author(s): Lei Li, Xiaoli Wang, Qian Lei, Chuanzheng Sun, Yan Xi, Ran Chen, Yongming He
Software Mentions: 3
Published: over 6 years ago

10.3389/fcell.2020.615671

Identification of lncRNA-mRNA Regulatory Module to Explore the Pathogenesis and Prognosis of Melanoma
Cited by: 17
Author(s): Jiaqi Zhang, Hui Liu, Wenhao Zhang, Yinfang Li, Zhipeng Fan, Hua Jiang, Judong Luo
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.203039

Transcriptomic profile of the mice aging lung is associated with inflammation and apoptosis as important pathways
Cited by: 6
Author(s): Jazmín Calyeca, Yalbi I. Balderas-Martínez, Moisés Selman, Annie Pardo
Software Mentions: 3
Published: over 5 years ago

10.1042/BSR20194200

Genome-wide analysis of the hypoxia-related DNA methylation-driven genes in lung adenocarcinoma progression
Cited by: 19
Author(s): Hongxia Li, Tong Li, Tao Hong, Zhe Liu
Software Mentions: 3
Published: over 6 years ago

10.3390/biom9080364

Identification of SWI2/SNF2-Related 1 Chromatin Remodeling Complex (SWR1-C) Subunits in Pineapple and the Role of Pineapple SWR1 COMPLEX 6 (AcSWC6) in Biotic and Abiotic Stress Response
Cited by: 9
Author(s): Bello Hassan Jakada, Mohammad Aslam, Beenish Fakher, Joseph G. Greaves, Zeyun Li, Weimin Liu, Linyi Lai, Oyekunle Adenike Ayoade, Yan Cheng, Shijiang Cao, Gang Li, Jer‐Ming Hu, Yuan Qin
Software Mentions: 3
Published: about 7 years ago

10.3390/biomedicines8090292

Anticancer Imidazoacridinone C-1311 is Effective in Androgen-Dependent and Androgen-Independent Prostate Cancer Cells
Cited by: 5
Author(s): Magdalena Niemira, Barbara Borowa-Mazgaj, Samuel B. Bader, Adrianna Moszyńska, Marcin Ratajewski, Kaja Karaś, Mirosław Kwaśniewski, Adam Krętowski, Zofia Mazerska, Ester M. Hammond, Anna Skwarska
Software Mentions: 3
Published: about 6 years ago

10.18632/aging.202882

Transcriptome integration analysis and specific diagnosis model construction for Hodgkin's lymphoma, diffuse large B-cell lymphoma, and mantle cell lymphoma
Cited by: 2
Author(s): Wen‐Xing Li, Shao‐Xing Dai, Sanqi An, Tingting Sun, Justin Liu, Jun Wang, Leyna G. Liu, Yang Xiao, Hua Yang, Lixia Fan, Xiaoli Zhang, Wanqin Liao, Hua You, Luca Tamagnone, Fang Liu, Jing‐Fei Huang, Dahai Liu
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.102349

A molecular sub-cluster of colon cancer cells with low VDR expression is sensitive to chemotherapy, BRAF inhibitors and PI3K-mTOR inhibitors treatment
Cited by: 19
Author(s): Haiwei Wang, Xinrui Wang, Liangpu Xu, Ji Zhang, Hua Cao
Software Mentions: 3
Published: almost 7 years ago

10.3389/fcell.2021.661243

Ligand–Receptor Interactions Elucidate Sex-Specific Pathways in the Trajectory From Primordial Germ Cells to Gonia During Human Development
Cited by: 11
Author(s): Arend W. Overeem, Yolanda W. Chang, Jeroen Spruit, Celine M. Roelse, Susana M. Chuva de Sousa Lopes
Software Mentions: 3
Published: about 5 years ago

10.3389/fphar.2020.546589

The Enhanced Pharmacological Effects of Modified Traditional Chinese Medicine in Attenuation of Atherosclerosis Is Driven by Modulation of Gut Microbiota
Cited by: 12
Author(s): JI Wen-yan, Ting Jiang, Zheng Sun, Fei Teng, Chenchen Ma, Shi Huang, Shi Fang Yan
Software Mentions: 3
Published: almost 6 years ago

10.1155/2018/9415409

Time-Course Comparative Metabolite Profiling under Osmotic Stress in Tolerant and Sensitive Tibetan Hulless Barley
Cited by: 50
Author(s): Hongjun Yuan, Xingquan Zeng, Jian Shi, Qijun Xu, Yulin Wang, Dunzhu Jabu, Zha Sang, Nyima Tashi
Software Mentions: 3
Published: over 7 years ago

10.3389/fmolb.2021.640387

Lipidomic Perturbations in Cynomolgus Monkeys are Regulated by Thyroid Stimulating Hormone
Cited by: 2
Author(s): Tao Xu, Yi-Yan Yang, Xing Huang, Jianhong Ren, Ting Xu, Wei Xie
Software Mentions: 3
Published: over 5 years ago

10.3389/fphar.2020.559618

Metabolomics Deciphers Potential Targets of Xuefu Zhuyu Decoction Against Traumatic Brain Injury in Rat
Cited by: 9
Author(s): Teng Li, En Hu, Pengfei Li, Zhaoyu Yang, Yi-Ming Wu, Ruoqi Ding, Xiaofei Zhu, Tao Tang, Yang Wang
Software Mentions: 3
Published: almost 6 years ago

10.1155/2020/5156304

Comprehensive Analyses of miRNA-mRNA Network and Potential Drugs in Idiopathic Pulmonary Arterial Hypertension
Cited by: 8
Author(s): Chan Li, Zeyu Zhang, Qian Xu, Ruizheng Shi
Software Mentions: 3
Published: about 6 years ago

10.1155/2020/2071593

High Expression of UBB, RAC1, and ITGB1 Predicts Worse Prognosis among Nonsmoking Patients with Lung Adenocarcinoma through Bioinformatics Analysis
Cited by: 11
Author(s): Huan Deng, Yo-Ping Huang, Li Wang, Ming Chen
Software Mentions: 3
Published: almost 6 years ago

10.1155/2021/2545459

Identification of Differentially Expressed circRNAs, miRNAs, and Genes in Patients Associated with Cartilaginous Endplate Degeneration
Cited by: 0
Author(s): Haiwei Xu, Yongjin Li, Jianhua Li, Zhenxin Huo, Guowang Li, Lilong Du, Lijun Tian, Bei Xu
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms221810073

Systemic Expression of Genes Involved in the Plant Defense Response Induced by Wounding in Senna tora
Cited by: 11
Author(s): Ji-Nam Kang, Woo-Haeng Lee, So Youn Won, Saemin Chang, Jaemin Hong, Tae‐Jin Oh, Si Myung Lee, Sang-Ho Kang
Software Mentions: 3
Published: almost 5 years ago

10.3389/fonc.2021.647512

Transcriptomic and Mutational Analysis Discovering Distinct Molecular Characteristics Among Chinese Thymic Epithelial Tumor Patients
Cited by: 5
Author(s): Ning Liang, Lei Liu, Cheng Huang, Huan Liu, Chao Guo, Ji Li, Weiwei Wang, Nan Li, Rui Lin, Tao Wang, Lieming Ding, Li Mao, Shanqing Li
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-021-90554-3

A potential role for somatostatin signaling in regulating retinal neurogenesis
Cited by: 5
Author(s): Kurt Weir, Dong Won Kim, Seth Blackshaw
Software Mentions: 3
Published: over 5 years ago

10.1155/2020/3040839

The Oncogenic Role of CENPA in Hepatocellular Carcinoma Development: Evidence from Bioinformatic Analysis
Cited by: 17
Author(s): Yuan Zhang, Lei Yang, Jia Shi, Yao Lu, Xiaorong Chen, Zongguo Yang
Software Mentions: 3
Published: over 6 years ago

10.1155/2019/1649423

A 6-Gene Risk Signature Predicts Survival of Glioblastoma Multiforme
Cited by: 14
Author(s): J. W. Zhao, Le Wang, Guozhang Hu, Bo Wei
Software Mentions: 3
Published: about 7 years ago

10.3389/fcimb.2021.641920

Persistent Bacterial Coinfection of a COVID-19 Patient Caused by a Genetically Adapted Pseudomonas aeruginosa Chronic Colonizer
Cited by: 44
Author(s): Jiuxin Qu, Zhao Cai, Yumei Liu, Xiangke Duan, Shuhong Han, Jihong Liu, Yuao Zhu, Zhichao Jiang, Yingdan Zhang, Chao Zhuo, Yang Liu, Yingxia Liu, Lei Liu, Liang Yang
Software Mentions: 3
Published: over 5 years ago

10.3389/fphar.2021.632206

LINC01116 Promotes Doxorubicin Resistance in Osteosarcoma by Epigenetically Silencing miR-424-5p and Inducing Epithelial-Mesenchymal Transition
Cited by: 11
Author(s): Ran Li, Qing Ruan, Jia Zheng, Butian Zhang, Hongliang Yang
Software Mentions: 3
Published: over 5 years ago

10.1038/srep33342

Metabolic engineering of cottonseed oil biosynthesis pathway via RNA interference
Cited by: 29
Author(s): Zhongping Xu, Jingwen Li, Xiaoping Guo, Shuangxia Jin, Xianlong Zhang
Software Mentions: 3
Published: almost 10 years ago

10.1038/srep28075

Cellular responses to HSV-1 infection are linked to specific types of alterations in the host transcriptome
Cited by: 52
Author(s): Benxia Hu, Li X, Yongxia Huo, Yafen Yu, Qiuping Zhang, Guijun Chen, Yaping Zhang, Nigel W. Fraser, Dong‐Dong Wu, Jumin Zhou
Software Mentions: 3
Published: about 10 years ago

10.1038/srep27623

Multiplex giant magnetoresistive biosensor microarrays identify interferon-associated autoantibodies in systemic lupus erythematosus
Cited by: 31
Author(s): J. Lee, D. James Haddon, Hannah Wand, J. M. Price, Vivian K. Diep, Drew A. Hall, Michelle Petri, Emily C. Baechler, Imelda Balboni, Paul J. Utz, Shan X. Wang
Software Mentions: 3
Published: about 10 years ago

10.3389/fmicb.2019.01424

The Diversity and Geographic Distribution of Cultivable Bacillus-Like Bacteria Across Black Soils of Northeast China
Cited by: 17
Author(s): Junjie Liu, Xiao Yang Cui, Zhuxiu Liu, Guo Zhaokui, Zhenhua Yu, Qin Yao, Yueyu Sui, Jian Jin, Xiaobing Liu
Software Mentions: 3
Published: about 7 years ago

10.3389/fimmu.2021.722293

Precision N-Glycoproteomic Profiling of Murine Peritoneal Macrophages After Different Stimulations
Cited by: 2
Author(s): Lujie Yang, Tianqi Gong, Huali Shen, Jiangnan Pei, Lei Zhang, Quanqing Zhang, Yuanyu Huang, Zuojian Hu, Ziyue Pan, Pengyuan Yang, Gang Li, Hongxiu Yu
Software Mentions: 3
Published: about 5 years ago

10.3389/fped.2019.00265

Lung Microbiota and Pulmonary Inflammatory Cytokines Expression Vary in Children With Tracheomalacia and Adenoviral or Mycoplasma pneumoniae Pneumonia
Cited by: 19
Author(s): Heping Wang, Qian Zhou, Wenkui Dai, Xin Feng, Zhiwei Lü, Zhenyu Yang, Yanhong Liu, Guoli Xie, Yonghong Yang, Kunling Shen, Yinhu Li, Shuai Cheng Li, Ximing Xu, Yongshun Shen, Dongfang Li, Yuejie Zheng
Software Mentions: 3
Published: about 7 years ago

10.1155/2020/3858373

A Robust Signature Based on Autophagy-Associated LncRNAs for Predicting Prognosis in Lung Adenocarcinoma
Cited by: 12
Author(s): Mi Zhou, Wei Shao, Haiyun Dai, Xin Zhu
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-66939-1

Soluble silica stimulates osteogenic differentiation and gap junction communication in human dental follicle cells
Cited by: 17
Author(s): Pamela Uribe, Anders Johansson, Ravin Jugdaohsingh, Jonathan J. Powell, Catarina Magnusson, Marcela Dávila, Anna Westerlund, Maria Ransjö
Software Mentions: 3
Published: about 6 years ago

10.3389/fimmu.2021.611656

IL-12p40/IL-23p40 Blockade With Ustekinumab Decreases the Synovial Inflammatory Infiltrate Through Modulation of Multiple Signaling Pathways Including MAPK-ERK and Wnt
Cited by: 16
Author(s): Renée H Fiechter, Henriëtte M. de Jong, Leonieke J J van Mens, Inka A. Fluri, Sander W. Tas, Dominique Baeten, Nataliya Yeremenko, Marleen G H van de Sande
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-019-6340-7

The transcriptome variations of Panaxnotoginseng roots treated with different forms of nitrogen fertilizers
Cited by: 11
Author(s): Xiaohong Ou, Shipeng Li, Peiran Liao, Xiuming Cui, Binglian Zheng, Ye Yang, Dahui Liu, Yun Zheng
Software Mentions: 3
Published: almost 7 years ago

10.1038/srep33151

De novo Transcriptome Analysis Reveals Distinct Defense Mechanisms by Young and Mature Leaves of Hevea brasiliensis (Para Rubber Tree)
Cited by: 37
Author(s): Yuxiao Fang, Hailiang Mei, Binhui Zhou, Xiaohu Xiao, Meng Yang, Yacheng Huang, Xiangyu Long, Songnian Hu, Chaorong Tang
Software Mentions: 3
Published: almost 10 years ago

10.1038/s41598-021-87977-3

Environmental factors shape the epiphytic bacterial communities of Gracilariopsis lemaneiformis
Cited by: 16
Author(s): Pengbing Pei, Muhammad Aslam, Hong Du, Honghao Liang, Wu Hui, Xiaojuan Liu, Weizhou Chen
Software Mentions: 3
Published: over 5 years ago

10.1038/srep13888

Comprehensive urinary metabolomic profiling and identification of potential noninvasive marker for idiopathic Parkinson’s disease
Cited by: 107
Author(s): Hemi Luan, Liang-Feng Liu, Tian Zhi, Manwen Zhang, Ka-Kit Chua, Ju‐Xian Song, Vincent Mok, Min Li, Zongwei Cai
Software Mentions: 3
Published: almost 11 years ago

10.18632/oncotarget.19483

Identification of hub genes involved in the development of hepatocellular carcinoma by transcriptome sequencing
Cited by: 8
Author(s): Yongchang Zheng, Junyu Long, Liangcai Wu, Haohai Zhang, Lin Li, Ying Zheng, Anqiang Wang, Jianzhen Lin, Xiaobo Yang, Xinting Sang, Ke Hu, Jie Pan, Haitao Zhao
Software Mentions: 3
Published: about 9 years ago

10.1038/srep12978

From lithotroph- to organotroph-dominant: directional shift of microbial community in sulphidic tailings during phytostabilization
Cited by: 42
Author(s): Xiaofang Li, Philip L. Bond, Joy D. Van Nostrand, Jizhong Zhou, Longbin Huang
Software Mentions: 3
Published: about 11 years ago

10.1038/srep37376

Differential fecal microbiota are retained in broiler chicken lines divergently selected for fatness traits
Cited by: 73
Author(s): Qiangchuan Hou, Lai‐Yu Kwok, Yi Zheng, Lifeng Wang, Zhuang Guo, Jiachao Zhang, Weiqiang Huang, Yuxiang Wang, Li Leng, Hui Li, Heping Zhang
Software Mentions: 3
Published: almost 10 years ago

10.1038/s41598-020-68074-3

Tumor microenvironment characterization in head and neck cancer identifies prognostic and immunotherapeutically relevant gene signatures
Cited by: 25
Author(s): Mengqi Huo, Ying Zhang, Zhong Chen, Suxin Zhang, Yong-Rui Bao, Tianke Li
Software Mentions: 3
Published: about 6 years ago

10.3389/fimmu.2021.681380

Memory CD8 T Cells Generated by Cytomegalovirus Vaccine Vector Expressing NKG2D Ligand Have Effector-Like Phenotype and Distinct Functional Features
Cited by: 4
Author(s): Marko Šustić, Maja Cokarić Brdovčak, Berislav Lisnić, Jelena Materljan, Vanda Juranić Lisnić, Carmen Rožmanić, Daniela Indenbirken, Lea Hiršl, Dirk H. Busch, Ilija Brizić, Astrid Krmpotić, Stipan Jonjić
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-021-07536-y

Expression characteristics of pineal miRNAs at ovine different reproductive stages and the identification of miRNAs targeting the AANAT gene
Cited by: 1
Author(s): Ran Di, Qiu Yue Liu, Shu Hui Song, Dong Tian, Jian He, Ying Ge, Xiang Yu Wang, Wen Hu, Joram M. Mwacharo, Zhang Yuan Pan, Jian Dong Wang, Qing Ma, G. L. Cao, Hui Jin, Liang Xiao, M. X. Chu
Software Mentions: 3
Published: over 5 years ago

10.1038/s41597-020-00754-1

Transcriptome dataset of human corneal endothelium based on ribosomal RNA-depleted RNA-Seq data
Cited by: 13
Author(s): Yoshiyuki Tokuda, Naoki Okumura, Yuya Komori, Naoya Hanada, Kei Tashiro, Noriko Koizumi, Masakazu Nakano
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12974-020-01953-8

Coding transcriptome analyses reveal altered functions underlying immunotolerance of PEG-fused rat sciatic nerve allografts
Cited by: 2
Author(s): Tyler A. Smith, Cameron L. Ghergherehchi, Haley O. Tucker, George D. Bittner
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12864-019-5603-7

Genomic comparison of serogroups O159 and O170 with other Vibrio cholerae serogroups
Cited by: 8
Author(s): Zhenpeng Li, Xin Lü, Duochun Wang, Wei Li Liang, Jingyun Zhang, Jie Li, Jialiang Xu, Bo Pang, Biao Kan
Software Mentions: 3
Published: over 7 years ago

10.18632/aging.102178

Prognostic value of genome-wide DNA methylation patterns in noncoding miRNAs and lncRNAs in uveal melanomas
Cited by: 1
Author(s): Zheng Zhang, Dan Xu, Ke–Qing Shi, Minfeng Chen, Fan Liu
Software Mentions: 3
Published: about 7 years ago

10.1186/s12931-019-0995-0

Identification of differentially expressed proteins in the injured lung from zinc chloride smoke inhalation based on proteomics analysis
Cited by: 13
Author(s): Xiaowei Xie, Jiemin Zhao, Lei Xie, Haiyan Wang, Yan Xiao, Yingjia She, Lingyun Ma
Software Mentions: 3
Published: over 7 years ago

10.3389/fimmu.2019.02101

Nrf2 Negatively Regulates Type I Interferon Responses and Increases Susceptibility to Herpes Genital Infection in Mice
Cited by: 24
Author(s): Camilla Gunderstofte, Marie B. Iversen, Suraj Peri, Anne Thielke, Siddharth Balachandran, Christian K. Holm, David Olagnier
Software Mentions: 3
Published: about 7 years ago

10.21203/rs.3.rs-86169/v1

Clofazimine is a broad-spectrum coronavirus inhibitor that antagonizes SARS-CoV-2 replication in primary human cell culture and hamsters
Cited by: 11
Author(s): Shuofeng Yuan, Xin Yin, Xiangzhi Meng, Jasper Fuk Woo Chan, Zi‐Wei Ye, Laura Riva, Lars Pache, Chris Chun-Yiu Chan, Pok-Man Lai, Chris Chun Yiu Chan, Vincent Kwok Man Poon, Naoko Matsunaga, Yuan Pu, Chun-Kit Yuen, Jianli Cao, Ronghui Liang, Kaiming Tang, Sheng Li, Yushen Du, Wan Xu, Kong-Hung Sze, Jinxia Zhang, Hin Chu, Kin‐Hang Kok, Kelvin Kai-Wang To, Dong-Yan Jin, Ren Sun, Sumit K. Chanda, Kwok‐Yung Yuen
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12958-021-00801-5

Trophoblast derived extracellular vesicles specifically alter the transcriptome of endometrial cells and may constitute a critical component of embryo-maternal communication
Cited by: 19
Author(s): Kasun Godakumara, James Ord, Freddy Lättekivi, Keerthie Dissanayake, Janeli Viil, Nageswara Rao Boggavarapu, Omid R. Faridani, Kersti Jääger, Agne Velthut-Meikas, Ülle Jaakma, Andres Salumets, Alireza Fazeli
Software Mentions: 3
Published: about 5 years ago

10.1038/srep40301

Evolution of protein N-glycosylation process in Golgi apparatus which shapes diversity of protein N-glycan structures in plants, animals and fungi
Cited by: 25
Author(s): Peng Wang, Hong Wang, Jiangtao Gai, Xiaoli Tian, Xiaoxiao Zhang, Yongzhi Lv, Yi Jiang
Software Mentions: 3
Published: over 9 years ago

10.3389/fonc.2020.597569

Identification and Validation of an Autophagy-Related lncRNA Signature for Patients With Breast Cancer
Cited by: 13
Author(s): Ruyue Zhang, Qingwen Zhu, Dengke Yin, Zichang Yang, Jiahao Guo, Jingmin Zhang, Yubing Zhou, Jane Yu
Software Mentions: 3
Published: over 5 years ago

10.1098/rsos.210113

Gene expression associated with disease resistance and long-term growth in a reef-building coral
Cited by: 9
Author(s): Emma R. Kelley, Robin S. Sleith, Mikhail V. Matz, Rachel M. Wright
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-018-5325-2

Analysis of microRNAs, phased small interfering RNAs and their potential targets in Rosarugosa Thunb.
Cited by: 12
Author(s): Junqiang Guo, Qingyi Wang, Li Liu, Shuchao Ren, Shipeng Li, Peiran Liao, Zhigang Zhao, Chenyu Lu, Bingbing Jiang, Ramanjulu Sunkar, Yun Zheng
Software Mentions: 3
Published: over 7 years ago

10.1186/s12870-021-03078-3

Genome-wide identification and expression analysis of LBD transcription factor genes in Moso bamboo (Phyllostachys edulis)
Cited by: 17
Author(s): Bin Huang, Zhinuo Huang, Ruifang Ma, Muthusamy Ramakrishnan, Jialu Chen, Zhijun Zhang, Kim Yrjälä
Software Mentions: 3
Published: about 5 years ago

10.3389/fimmu.2021.707355

Dysregulation of the Immune Environment in the Airways During HIV Infection
Cited by: 6
Author(s): Rubina Bunjun, Andreia Soares, Narjis Thawer, Tracey L. Müller, Agano Kiravu, Zekarias Ginbot, Björn Corleis, Brandon D. Murugan, Douglas S. Kwon, Florian von Groote-Bidlingmaier, Catherine Riou, Robert J. Wilkinson, Gerhard Walzl, Wendy A. Burgers
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.ppat.1008870

Eomes cannot replace its paralog T-bet during expansion and differentiation of CD8 effector T cells
Cited by: 7
Author(s): Jonas Fixemer, Jonas Hummel, Frederic Arnold, Christoph S. N. Klose, Alexis Hofherr, Kristoffer Weißert, Tamara Kögl, Michael Köttgen, Sebastian J. Arnold, Peter Aichele, Yakup Tanriver
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.ppat.1008803

Closely related reovirus lab strains induce opposite expression of RIG-I/IFN-dependent versus -independent host genes, via mechanisms of slow replication versus polymorphisms in dsRNA binding σ3 respectively
Cited by: 17
Author(s): Adil Mohamed, Prathyusha Konda, Heather E. Eaton, Shashi Gujar, James R. Smiley, Maya Shmulevitz
Software Mentions: 3
Published: almost 6 years ago

10.3389/fimmu.2021.703846

Identification of Novel Low-Density Neutrophil Markers Through Unbiased High-Dimensional Flow Cytometry Screening in Non-Small Cell Lung Cancer Patients
Cited by: 11
Author(s): Paulina Valadez-Cosmes, Kathrin Maitz, Oliver Kindler, Sofia Raftopoulou, Melanie Kienzl, Ana Santiso, Zala Nikita Mihalič, Luka Brčić, Jörg Lindenmann, Melanie Fediuk, Martin Pichler, Rudolf Schicho, A. McGarry Houghton, Ákos Heinemann, Julia Kargl
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.ppat.1008006

Shigella sonnei infection of zebrafish reveals that O-antigen mediates neutrophil tolerance and dysentery incidence
Cited by: 17
Author(s): Vincenzo Torraca, Myrsini Kaforou, Jayne Watson, Gina Duggan, Hazel Guerrero-Gutierrez, Sina Krokowski, Michael Hollinshead, Tom Clarke, Rafal Mostowy, Gillian S. Tomlinson, Vanessa Sancho‐Shimizu, Abigail Clements, Serge Mostowy
Software Mentions: 3
Published: over 6 years ago

10.1186/s13568-021-01200-0

Effects of altitude on human oral microbes
Cited by: 14
Author(s): Fang Liu, Tian Liang, Zhiying Zhang, Lijun Liu, Jing Li, Wenxue Dong, Han Zhang, Su Bai, Lifeng Ma, Longli Kang
Software Mentions: 3
Published: over 5 years ago

10.1186/s12575-020-00125-5

Combination of Size-Exclusion Chromatography and Ultracentrifugation Improves the Proteomic Profiling of Plasma-Derived Small Extracellular Vesicles
Cited by: 33
Author(s): Rui Wei, Libo Zhao, Guanyi Kong, Xiang Liu, Shoumin Zhu, Shutian Zhang, Li Min
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-020-66986-8

ssGSEA score-based Ras dependency indexes derived from gene expression data reveal potential Ras addiction mechanisms with possible clinical implications
Cited by: 100
Author(s): Ming Yi, Dwight V. Nissley, Frank McCormick, Robert M. Stephens
Software Mentions: 3
Published: about 6 years ago

10.3390/jcm9092920

A Pilot Study on MicroRNA Profile in Tear Fluid to Predict Response to Anti-VEGF Treatments for Diabetic Macular Edema
Cited by: 9
Author(s): Hwei Wuen Chan, Binxia Yang, Wai P. Wong, Paul Blakeley, Ivan Seah, Queenie Shu Woon Tan, Haofei Wang, Mayuri Bhargava, Hazel Anne Lin, Charmaine Chai, Erlangga Ariadarma Mangunkusumo, Thet Naing, Yew Sen Yuen, Raman Sethi, Si Wang, Walter Hunziker, Lingam Gopal, Xinyi Su
Software Mentions: 3
Published: almost 6 years ago

10.1210/clinem/dgaa382

Effect of Gut Microbiota and <i>PNPLA3</i> rs738409 Variant on Nonalcoholic Fatty Liver Disease (NAFLD) in Obese Youth
Cited by: 39
Author(s): Ayesha Monga Kravetz, Todd Testerman, Brittany Galuppo, Joerg Graf, Bridget Pierpont, Stephan Siebel, Richard Feinn, Nicola Santoro
Software Mentions: 3
Published: about 6 years ago

Projects: cran: pheatmap

Science Score: 75/100

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Papers Mentioning pheatmap 2,572