cran: pheatmap | Projects | Ecosyste.ms: Papers

10.1155/2020/8867019

Development of an Autophagy Score Signature for Predicting Overall Survival in Papillary Renal Cell Carcinoma
Cited by: 2
Author(s): Xiang Gu, Xiaojun Chen, Lei Zhu, Wenbo Song, Ali Wang, Junfeng Chu, Tao Wang, Peng Jiang, Yuxiang Ge
Software Mentions: 3
Published: about 4 years ago

10.1155/2019/7049294

Identification of Key Pathways and Genes in the Orai2 Mediated Classical and Mesenchymal Subtype of Glioblastoma by Bioinformatic Analyses
Cited by: 11
Author(s): Feng Yuan, Yi Li, Hai Long, Yingshuai Wang, Yihan Yang, Tao Li, Luqing Tong, Haiwen Ma, Peidong Liu, Haolang Ming, Biao Ren, Shukun Yu, Yu Lin, Xuejun Yang
Software Mentions: 3
Published: about 5 years ago

10.7150/jca.50472

High Expression of RhoBTB3 Predicts Favorable Chemothrapy Outcomes in non-M3 Acute Myeloid Leukemia
Cited by: 3
Author(s): Shuanghui Yang, Wei Liu, Jie Peng, Yajing Xu, Yanfeng Liu, Yan Li, Minyuan Peng, Zhao Ouyang, Cong Chen, Enyi Liu
Software Mentions: 3
Published: almost 4 years ago

10.3390/diagnostics10050263

The Influence of Methylating Mutations on Acute Myeloid Leukemia: Preliminary Analysis on 56 Patients
Cited by: 3
Author(s): Sergiu Pașca, Cristina Turcas, Ancuța Jurj, Patric Teodorescu, Sabina Iluta, Ionut Hotea, Anca Bojan, Cristina Selicean, Bogdan Fetică, Bobe Petrushev, Vlad Moisoiu, Alina-Andreea Zimța, Valentina Sas, Cătălin Constantinescu, Dumitru Zdrenghea, Delia Dima, Ciprian Tomuleasa
Software Mentions: 3
Published: over 4 years ago

10.3389/fonc.2021.693353

Identification of Key Genes Related to CD8+ T-Cell Infiltration as Prognostic Biomarkers for Lung Adenocarcinoma
Cited by: 6
Author(s): Minjun Du, Yicheng Liang, Zixu Liu, Xingkai Li, Mei Liang, Boxuan Zhou, Yushun Gao
Software Mentions: 3
Published: about 3 years ago

10.4049/jimmunol.2100063

Defining T Cell Subsets in Human Tonsils Using ChipCytometry
Cited by: 3
Author(s): Joachim Hagel, Kyle Bennett, Francesca M. Buffa, Paul Klenerman, Christian Willberg, Kate Powell
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2017.00456

Comparative Genomics Analysis of a New Exiguobacterium Strain from Salar de Huasco Reveals a Repertoire of Stress-Related Genes and Arsenic Resistance
Cited by: 30
Author(s): Juan Castro‐Severyn, Francisco Remonsellez, Sandro L. Valenzuela, Cesar Salinas, Jonathan Fortt, Pablo S. Aguilar, Coral Pardo-Esté, Cristina Dorador, Raquel Quatrini, Franck Molina, Daniel Aguayo, Eduardo Castro-Nallar, Claudia P. Saavedra
Software Mentions: 3
Published: over 7 years ago

10.1186/s13068-021-02018-5

CAZymes from the thermophilic fungus Thermoascus aurantiacus are induced by C5 and C6 sugars
Cited by: 5
Author(s): Raphael Gabriel, Rebecca C. Mueller, Lena Floerl, Cynthia Hopson, Simon Harth, Timo Schuerg, André Fleißner, Steven W. Singer
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0248430

High mutation burden in the checkpoint and micro-RNA processing genes in myelodysplastic syndrome
Cited by: 5
Author(s): Ivan S. Moiseev, Nikolai Tsvetkov, Ildar Barkhatov, Maria V. Barabanshikova, Dmitrii S. Bug, Natalya Vitalievna Petuhova, Артем Тишков, Evgeny Bakin, Е. А. Измайлова, Alena I. Shakirova, Alexander Kulagin, Elena Morozova
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2018.00971

Characterization of Microcystis (Cyanobacteria) Genotypes Based on the Internal Transcribed Spacer Region of rRNA by Next-Generation Sequencing
Cited by: 13
Author(s): Da Huo, Youxin Chen, Tao Zheng, Liu Xiang, Xinyue Zhang, Ge Yu, Zhiyi Qiao, Renhui Li
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-61688-7

Prognostic implications of EGFR protein expression in sporadic colorectal tumors: Correlation with copy number status, mRNA levels and miRNA regulation
Cited by: 15
Author(s): Sofía Del Carmen, Luis A. Corchete, Ruth Gervás, A Barrio Rodriguez, María José García, José A. Sánchez Alcázar, José María Sánchez García, Óscar Bengoechea, Luís Muñoz-Bellvis, José María Sayagués, Mónica Viñarás Abad
Software Mentions: 3
Published: over 4 years ago

10.18632/aging.203039

Transcriptomic profile of the mice aging lung is associated with inflammation and apoptosis as important pathways
Cited by: 6
Author(s): Jazmín Calyeca, Yalbi I. Balderas-Martínez, Moisés Selman, Annie Pardo
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-020-59469-3

Targeting Oncogenic Super Enhancers in MYC-Dependent AML Using a Small Molecule Activator of NR4A Nuclear Receptors
Cited by: 18
Author(s): S. Greg Call, Ryan P. Duren, Anil K. Panigrahi, Huu Lam Nguyen, Pablo R. Freire, Sandra L. Grimm, Cristian Coarfa, Orla M. Conneely
Software Mentions: 3
Published: almost 5 years ago

10.18632/aging.102612

ASPM promotes glioblastoma growth by regulating G1 restriction point progression and Wnt-β-catenin signaling
Cited by: 29
Author(s): Xin Chen, Lijie Huang, Yang Yang, Suhua Chen, Jianjun Sun, Chang-cheng Ma, Jingcheng Xie, Yongmei Song, Jun Yang
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-020-57806-0

Novel Analytical Platform For Robust Identification of Cell Migration Inhibitors
Cited by: 6
Author(s): Parinyachat Somchai, Kriengkrai Phongkitkarun, Patipark Kueanjinda, Supawan Jamnongsong, Kulthida Vaeteewoottacharn, Vor Luvira, Seiji Okada, Siwanon Jirawatnotai, Somponnat Sampattavanich
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12864-019-6340-7

The transcriptome variations of Panaxnotoginseng roots treated with different forms of nitrogen fertilizers
Cited by: 11
Author(s): Xiaohong Ou, Shipeng Li, Peiran Liao, Xiuming Cui, Binglian Zheng, Ye Yang, Dahui Liu, Yun Zheng
Software Mentions: 3
Published: almost 5 years ago

10.1042/BSR20200214

Dipeptidyl peptidase like 6 promoter methylation is a potential prognostic biomarker for pancreatic ductal adenocarcinoma
Cited by: 5
Author(s): Xin Zhao, Di Cao, Zhiwei Ren, Zhe Liu, Shaocheng Lv, Jun Zhu, Lixin Li, Ren Lang, Qiang He
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2021.687533

Biosorption of Copper in Swine Manure Using Aspergillus and Yeast: Characterization and Its Microbial Diversity Study
Cited by: 1
Author(s): Yongkang Zhen, Mengzhi Wang, Yinmin Gu, Xiao Yu, Khuram Shahzad, Jun Xu, Yuqing Gong, Peizhen Li, Juan J. Loor
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pntd.0009217

Effects and interaction of meteorological factors on hemorrhagic fever with renal syndrome incidence in Huludao City, northeastern China, 2007–2018
Cited by: 12
Author(s): Wanwan Sun, Xiaobo Liu, Li Ming Wen, Zhiyuan Mao, Jimin Sun, Liang Lu
Software Mentions: 3
Published: over 3 years ago

10.15252/embr.201948375

Class I <scp>HDAC</scp> inhibitors enhance <scp>YB</scp> ‐1 acetylation and oxidative stress to block sarcoma metastasis
Cited by: 63
Author(s): Amal M. El-Naggar, Syam Prakash Somasekharan, Yemin Wang, Hongwei Cheng, Gian Luca Negri, Melvin Pan, Xue Q. Wang, Alberto Delaidelli, Bo Rafn, Jordan Cran, Fan Zhang, Haifeng Zhang, Shane Colborne, Martin Gleave, Anna Mandinova, Nancy Kedersha, Christopher S. Hughes, Didier Surdez, Olivier Delattre, Yuzhuo Wang, David G. Huntsman, Gregg B. Morin, Poul H. Sorensen
Software Mentions: 3
Published: about 5 years ago

10.3390/v13091805

Acute HIV-1 and SARS-CoV-2 Infections Share Slan+ Monocyte Depletion—Evidence from an Hyperacute HIV-1 Case Report
Cited by: 1
Author(s): Guilherme B. Farias, Robert Badura, Carolina M. Conceição, André M. C. Gomes, Ana Godinho‐Santos, Joel Laia, Pedro Rosmaninho, Diana Santos, Catarina Mota, Afonso R. M. Almeida, S. Fernandes, A.C. Trombetta, Ana E. Sousa
Software Mentions: 3
Published: about 3 years ago

10.1038/s41598-019-47866-2

Early life exposures shape the CD4+ T cell transcriptome, influencing proliferation, differentiation, and mitochondrial dynamics later in life
Cited by: 6
Author(s): Catherine G. Burke, Jason R. Myers, Lisbeth A. Boulé, Christina M. Post, Paul S. Brookes, B. Paige Lawrence
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-021-07536-y

Expression characteristics of pineal miRNAs at ovine different reproductive stages and the identification of miRNAs targeting the AANAT gene
Cited by: 1
Author(s): Ran Di, Qiu Yue Liu, Shu Hui Song, Dong Tian, Jian He, Ying Ge, Xiang Yu Wang, Wen Hu, Joram M. Mwacharo, Zhang Yuan Pan, Jian Dong Wang, Qing Ma, G. L. Cao, Hui Jin, Liang Xiao, M. X. Chu
Software Mentions: 3
Published: over 3 years ago

10.3389/fgene.2020.589076

Identification of mRNAs and lncRNAs Involved in the Regulation of Follicle Development in Goat
Cited by: 7
Author(s): Zhifeng Zhao, Xian Zou, Tingting Lu, Ming Deng, Yaokun Li, Yongqing Guo, Baoli Sun, Guangbin Liu, Dewu Liu
Software Mentions: 3
Published: almost 4 years ago

10.1042/BSR20191139

Comprehensive analysis of long noncoding RNA and mRNA in five colorectal cancer tissues and five normal tissues
Cited by: 4
Author(s): Zhenxu Zhou, Xiaoming Chen, Yuqi Zhang, Peng Liu, Xiangyang Xue, Guoxin Li
Software Mentions: 3
Published: almost 5 years ago

10.18632/aging.103958

Identification of genomic alterations and associated transcriptomic profiling reveal the prognostic significance of MMP14 and PKM2 in patients with pancreatic cancer
Cited by: 5
Author(s): Haiwei Wang, Xinrui Wang, Liangpu Xu, Yingying Lin, Ji Zhang, Hua Cao
Software Mentions: 3
Published: about 4 years ago

10.15252/msb.202110207

A genome‐scale yeast library with inducible expression of individual genes
Cited by: 30
Author(s): Yuko Arita, Griffin Kim, Li Z, Helena Friesen, Gina Turco, Rebecca Y. Wang, Dale Climie, Matej Ušaj, Manuel Hotz, Emily H. Stoops, Anastasia Baryshnikova, Charles Boone, David Botstein, Brenda Andrews, R. Scott McIsaac
Software Mentions: 3
Published: over 3 years ago

10.1186/s12864-019-5603-7

Genomic comparison of serogroups O159 and O170 with other Vibrio cholerae serogroups
Cited by: 8
Author(s): Zhenpeng Li, Xin Lü, Duochun Wang, Wei Li Liang, Jingyun Zhang, Jie Li, Jialiang Xu, Bo Pang, Biao Kan
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-018-5325-2

Analysis of microRNAs, phased small interfering RNAs and their potential targets in Rosarugosa Thunb.
Cited by: 12
Author(s): Junqiang Guo, Qingyi Wang, Li Liu, Shuchao Ren, Shipeng Li, Peiran Liao, Zhigang Zhao, Chenyu Lu, Bingbing Jiang, Ramanjulu Sunkar, Yun Zheng
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2018.02045

Design of Primers for Evaluation of Lactic Acid Bacteria Populations in Complex Biological Samples
Cited by: 37
Author(s): Qiangchuan Hou, Xiaoye Bai, Weicheng Li, Xu Gao, Faming Zhang, Zhihong Sun, Heping Zhang
Software Mentions: 3
Published: about 6 years ago

10.1155/2021/1557968

Prognostic Analysis of Lung Adenocarcinoma Based on DNA Methylation Regulatory Factor Clustering
Cited by: 1
Author(s): Chen Yang, Chongquan Zhong, Shujun Bao, Fang Zheng, Jing Tang
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2018.02737

The Bacterial Community Structure and Microbial Activity in a Traditional Organic Milpa Farming System Under Different Soil Moisture Conditions
Cited by: 38
Author(s): Iván Pável Moreno-Espíndola, María Jesús Ferrara-Guerrero, Marco Luna‐Guido, Daniel Alejandro Ramírez-Villanueva, Arit S. de León-Lorenzana, Selene Gómez-Acata, Elizabeth González-Terreros, Blanca Ramírez-Barajas, Yendi E. Navarro‐Noya, Luis M. Sánchez-Rodríguez, Mariela Fuentes-Ponce, Juan U. Macedas-Jímenez, Luc Dendooven
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2021.687211

Gut Bacteria Associated With Monochamus saltuarius (Coleoptera: Cerambycidae) and Their Possible Roles in Host Plant Adaptations
Cited by: 18
Author(s): Si-Xun Ge, Fengming Shi, Jiahe Pei, Zehai Hou, Shixiang Zong, Lili Ren
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2019.01617

Reconditioning Degraded Mine Site Soils With Exogenous Soil Microbes: Plant Fitness and Soil Microbiome Outcomes
Cited by: 25
Author(s): Benjamin Moreira‐Grez, Miriam Muñoz‐Rojas, Khalil Kariman, Paul Storer, Anthony G. O'Donnell, Deepak Kumaresan, Andrew S. Whiteley
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-41625-z

Improved survival prognostication of node-positive malignant melanoma patients utilizing shotgun proteomics guided by histopathological characterization and genomic data
Cited by: 12
Author(s): Lázaro Betancourt, Krzysztof Pawłowski, Jonatan Eriksson, Attila Marcell Szász, Shamik Mitra, Indira Pla, Charlotte Welinder, Henrik Ekedahl, Per Broberg, Roger Appelqvist, Maria Yakovleva, Y. Sugita, Kenichi Miharada, Christian Ingvar, Lotta Lundgren, Bo Baldetorp, Håkan Olsson, Melinda Rezeli, Elisabet Wieslander, Péter Horvatovich, Johan Malm, Göran Jönsson, György Markó-Varga
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2018.01798

Differences in the Gut Microbiota Establishment and Metabolome Characteristics Between Low- and Normal-Birth-Weight Piglets During Early-Life
Cited by: 51
Author(s): Na Li, Shimeng Huang, Lili Jiang, Wei Wang, Tiantian Li, Bo Zuo, Zhen Li, Junjun Wang
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-019-40974-z

G-protein Gα13 functions as a cytoskeletal and mitochondrial regulator to restrain osteoclast function
Cited by: 11
Author(s): Shinichi Nakano, Kenzo Inoue, Cheng Xu, Zhonghao Deng, Viktoriya Syrovatkina, G. Vitone, Liang Zhao, Xin‐Yun Huang, Baohong Zhao
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pntd.0009297

Expression profiling of Echinococcus multilocularis miRNAs throughout metacestode development in vitro
Cited by: 7
Author(s): Natalia Macchiaroli, Matías Preza, Moira Pérez, Laura Kamenetzky, Marcela Alejandra Cucher, Uriel Koziol, Estela Castillo, Matthew Berriman, Klaus Brehm, Mara Cecília Rosenzvit
Software Mentions: 3
Published: over 3 years ago

10.15252/msb.20167159

Recurrent patterns of DNA copy number alterations in tumors reflect metabolic selection pressures
Cited by: 60
Author(s): Nicholas A. Graham, Aspram Minasyan, Anastasia Lomova, Ashley Cass, Nikolas G. Balanis, Michael Friedman, Shawna T. Chan, Sophie R. Zhao, Adrián Delgado, James Go, L. P. Beck, Christian Hurtz, Carina Ng, Rong Qiao, Johanna ten Hoeve, Nicolaos Palaskas, Hong Wu, Markus Müschen, Asha S. Multani, Elisa Port, Steven M. Larson, Nikolaus Schultz, Daniel Braas, Heather R. Christofk, Ingo K. Mellinghoff, Thomas G. Graeber
Software Mentions: 3
Published: almost 8 years ago

10.1042/BSR20210495

RNA sequencing reveals potential interacting networks between the altered transcriptome and ncRNome in the skeletal muscle of diabetic mice
Cited by: 5
Author(s): Devesh Kesharwani, Amit Kumar, M. Damodara Poojary, Vinod Scaria, Malabika Datta
Software Mentions: 3
Published: over 3 years ago

10.3389/fgene.2021.648158

Identification and Comparative Analysis of Long Non-coding RNAs in High- and Low-Fecundity Goat Ovaries During Estrus
Cited by: 3
Author(s): Yaokun Li, Xiangping Xu, Ming Deng, Xian Zou, Zhifeng Zhao, Sixiu Huang, Dewu Liu, Guangbin Liu
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2020.618144

Organic Acids as Alternatives for Antibiotic Growth Promoters Alter the Intestinal Structure and Microbiota and Improve the Growth Performance in Broilers
Cited by: 37
Author(s): Dong Dai, Kai Qiu, Haijun Zhang, Shu‐geng Wu, Yanming Han, Yuanyuan Wu, Guang‐hai Qi, Jing Wang
Software Mentions: 3
Published: almost 4 years ago

10.1080/21623945.2020.1789283

Identification of differentially expressed mRNA and the Hub mRNAs modulated by lncRNA Meg3 as a competing endogenous RNA in brown adipose tissue of mice on a high-fat diet
Cited by: 5
Author(s): Yemin Zhang, Yalin Fu, Yuyang Zheng, Zhongyuan Wen, Changhua Wang
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-018-32198-4

Experimental Adaptation of the Yellow Fever Virus to the Mosquito Aedes albopictus and Potential risk of urban epidemics in Brazil, South America
Cited by: 26
Author(s): Fadila Amraoui, Adrien Pain, Géraldine Piorkowski, Marie Vazeille, Dinair Couto-Lima, Xavier de Lamballerie, Ricardo Lourenço‐de‐Oliveira, Anna‐Bella Failloux
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2016.01781

The Microbiome and Occurrence of Methanotrophy in Carnivorous Sponges
Cited by: 18
Author(s): Jon Thomassen Hestetun, Helge K. Dahle, Steffen Leth Jørgensen, Bernt Rydland Olsen, Hans Tore Rapp
Software Mentions: 3
Published: about 8 years ago

10.1186/s12881-020-0992-7

An eight-mRNA signature outperforms the lncRNA-based signature in predicting prognosis of patients with glioblastoma
Cited by: 7
Author(s): Zhenyu Gong, Hong Fan, Hongxiang Wang, Xu Zhang, Juxiang Chen
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2019.00908

Bacterioplankton Community Composition Along Environmental Gradients in Lakes From Byers Peninsula (Maritime Antarctica) as Determined by Next-Generation Sequencing
Cited by: 25
Author(s): Antonio Picazo, Carlos Rochera, Juan Antonio Villaescusa, Javier Miralles‐Lorenzo, David Velázquez, Antonio Quesada, Antonio Camacho
Software Mentions: 3
Published: over 5 years ago

10.1042/BSR20202463

Explore prognostic biomarker of bladder cancer based on competing endogenous network
Cited by: 6
Author(s): Faping Li, Hui Guo, Bin Liu, Nian Liu, Zhixiang Xu, Yishu Wang, Honglan Zhou
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pntd.0006280

Transcriptomes of Trypanosoma brucei rhodesiense from sleeping sickness patients, rodents and culture: Effects of strain, growth conditions and RNA preparation methods
Cited by: 27
Author(s): Julius Mulindwa, Kevin Leiss, David Ibberson, Kevin Kamanyi Marucha, Claudia Helbig, Larissa Mélo do Nascimento, Eleanor Silvester, Keith R. Matthews, Enock Matovu, John Enyaru, Christine Clayton
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-018-29186-z

Inter-individual differences in contamination profiles as tracer of social group association in stranded sperm whales
Cited by: 5
Author(s): Joseph Schnitzler, Marianna Pinzone, Marijke Autenrieth, Abbo van Neer, Lonneke L. IJsseldijk, Jonathan L. Barber, Rob Deaville, Paul D. Jepson, Andrew Brownlow, Tobias Schaffeld, Jean-Pierre Thomé, Ralph Tiedemann, Krishna Das, Ursula Siebert
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2021.675263

The Murine Reg3a Stimulated by Lactobacillus casei Promotes Intestinal Cell Proliferation and Inhibits the Multiplication of Porcine Diarrhea Causative Agent in vitro
Cited by: 9
Author(s): Yongfei Bai, Yanmei Huang, Ying Liu, Bingbing Zhang, Xiao Cui-hong, Xilin Hou, Liyun Yu
Software Mentions: 3
Published: over 3 years ago

10.3390/nu13020637

Sex-Dependent Effects of 7,8-Dihydroxyflavone on Metabolic Health Are Associated with Alterations in the Host Gut Microbiome
Cited by: 8
Author(s): Pulkit Sharma, Guojun Wu, Deeptha Kumaraswamy, Natalie Burchat, Hong Ye, Yongjia Gong, Liping Zhao, Yan Y. Lam, Harini Sampath
Software Mentions: 3
Published: almost 4 years ago

10.3389/fmicb.2020.00652

Effects of Carbon/Nitrogen Ratio on Growth, Intestinal Microbiota and Metabolome of Shrimp (Litopenaeus vannamei)
Cited by: 26
Author(s): Haipeng Guo, Lei Huang, Songtao Hu, Chen Chen, Xiaolin Huang, Wei Liu, Sipeng Wang, Yueyue Zhu, Yueji Zhao, Demin Zhang
Software Mentions: 3
Published: over 4 years ago

10.1111/pbi.13111

Tea Plant Information Archive: a comprehensive genomics and bioinformatics platform for tea plant
Cited by: 177
Author(s): Enhua Xia, Fangdong Li, Wei Tong, Penghui Li, Qiong Wu, Hongxing Zhao, Ruoheng Ge, Ruopei Li, Yeyun Li, Zhengzhu Zhang, Chaoling Wei, Xiaochun Wan
Software Mentions: 3
Published: over 5 years ago

10.1002/2211-5463.12897

A digital mRNA expression signature to classify challenging Spitzoid melanocytic neoplasms
Cited by: 1
Author(s): Lisa M. Hillen, Milan S. Geybels, Ivelina Spassova, Juergen C. Becker, Thilo Gambichler, Marjan Garmyn, Axel zur Hausen, Joost van den Oord, Véronique Winnepenninckx
Software Mentions: 3
Published: over 4 years ago

10.1042/BSR20202921

Immune-associated biomarkers for early diagnosis of Parkinson’s disease based on hematological lncRNA–mRNA co-expression
Cited by: 8
Author(s): Kecheng Lei, Liwen Zhang, Yijing He, Hui Sun, Weifang Tong, Yawei Xu, Lingjing Jin
Software Mentions: 3
Published: almost 4 years ago

10.1186/s13018-020-01839-8

Bioinformatics analysis of differentially expressed genes in subchondral bone in early experimental osteoarthritis using microarray data
Cited by: 2
Author(s): Wang Zhao, Yong Ji, Hongwei Bao
Software Mentions: 3
Published: over 4 years ago

10.1186/s12920-020-0707-0

Transcriptome analysis reveals the link between lncRNA-mRNA co-expression network and tumor immune microenvironment and overall survival in head and neck squamous cell carcinoma
Cited by: 19
Author(s): Zhaoming Zhong, Min Hee Hong, Xiao Chen, Yan Xi, Yuanyuan Xu, Deyu Kong, Jun Deng, Yun Li, Rui Hu, Chuanzheng Sun, Jin Liang
Software Mentions: 3
Published: over 4 years ago

10.1186/s12920-019-0645-x

CDK1 and CCNB1 as potential diagnostic markers of rhabdomyosarcoma: validation following bioinformatics analysis
Cited by: 23
Author(s): Qianru Li, Liang Zhang, Jinfang Jiang, Yangyang Zhang, Xiaomeng Wang, Qiaochu Zhang, Yang Wang, Chunxia Liu, Feng Li
Software Mentions: 3
Published: almost 5 years ago

10.3389/fgene.2019.01045

Population Genetic Analysis of Modern and Ancient DNA Variations Yields New Insights Into the Formation, Genetic Structure, and Phylogenetic Relationship of Northern Han Chinese
Cited by: 25
Author(s): Pengyu Chen, Jian Wu, Li Luo, Hongyan Gao, Mengge Wang, Xing Zou, Yingxiang Li, Chen Gang, Haibo Luo, Limei Yu, Yanyan Han, Jia Fu, Guanglin He
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0160331

Differential Analysis of the Nasal Microbiome of Pig Carriers or Non-Carriers of Staphylococcus aureus
Cited by: 27
Author(s): Carmen Espinosa-Gongora, Niels Larsen, Kristian Schønning, Merete Fredholm, Luca Guardabassi
Software Mentions: 3
Published: over 8 years ago

10.3389/fonc.2020.01418

Bacterial Alterations in Post-Cholecystectomy Patients Are Associated With Colorectal Cancer
Cited by: 24
Author(s): Xinhua Ren, Jianming Xu, Yuanyuan Zhang, Guodong Chen, Yiwen Zhang, Qing Huang, Yulan Liu
Software Mentions: 3
Published: over 4 years ago

10.1042/BSR20200790

Identification of feature autophagy-related genes in patients with acute myocardial infarction based on bioinformatics analyses
Cited by: 4
Author(s): Yajuan Du, Enfa Zhao, Yushun Zhang
Software Mentions: 3
Published: over 4 years ago

10.1002/1878-0261.12642

Deciphering tissue‐based proteome signatures revealed novel subtyping and prognostic markers for thymic epithelial tumors
Cited by: 7
Author(s): Xin Ku, Qiangling Sun, Lei Zhu, Zhenyu Gu, Yuchen Han, Ning Xu, Chen Meng, Xiaohua Yang, Wei Yan, Wentao Fang
Software Mentions: 3
Published: almost 5 years ago

10.1042/BSR20194200

Genome-wide analysis of the hypoxia-related DNA methylation-driven genes in lung adenocarcinoma progression
Cited by: 19
Author(s): Hongxia Li, Tong Li, Tao Hong, Zhe Liu
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-018-20518-7

Csde1 binds transcripts involved in protein homeostasis and controls their expression in an erythroid cell line
Cited by: 20
Author(s): Kat Moore, Nurcan Yağcı, Floris van Alphen, Nahuel A. Paolini, Rastislav Horos, Ntsiki M. Held, Riekelt H. Houtkooper, Emile van den Akker, Alexander B. Meijer, Peter A. C. ât Hoen, Marieke von Lindern
Software Mentions: 3
Published: almost 7 years ago

10.3389/fonc.2021.595259

A Voxel-Based Radiographic Analysis Reveals the Biological Character of Proneural-Mesenchymal Transition in Glioblastoma
Cited by: 3
Author(s): Tengfei Qi, Xiangqi Meng, Zhenyu Wang, Xinyu Wang, Nan Sun, Jianguang Ming, Lejia Ren, Chuanlu Jiang, Jinquan Cai
Software Mentions: 3
Published: over 3 years ago

10.1002/1878-0261.12951

Detection of phenotype‐specific therapeutic vulnerabilities in breast cells using a CRISPR loss‐of‐function screen
Cited by: 3
Author(s): Anna Barkovskaya, Craig M. Goodwin, Kotryna Seip, Bylgja Hilmarsdóttir, Solveig Pettersen, Clint A. Stalnecker, Olav Engebraaten, Eiríkur Briem, Channing J. Der, Siver Andreas Moestue, Þórarinn Guðjónsson, Gunhild M. Mælandsmo, Lina Prasmickaite
Software Mentions: 3
Published: over 3 years ago

10.1155/2021/4664955

Systematic Profiling of mRNA Splicing Reveals the Prognostic Predictor and Potential Therapeutic Target for Glioblastoma Multiforme
Cited by: 5
Author(s): Botao Zhang, Quanyou Wu, Shujun Cheng, Wenbin Li
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms22052282

The RNAi Mechanism Regulates a New Exonuclease Gene Involved in the Virulence of Mucorales
Cited by: 8
Author(s): Carlos Pèrez-Arques, María Isabel Navarro-Mendoza, Laura Murcia, Eusebio Navarro, Victoriano Garre
Software Mentions: 3
Published: almost 4 years ago

10.3390/biom9080364

Identification of SWI2/SNF2-Related 1 Chromatin Remodeling Complex (SWR1-C) Subunits in Pineapple and the Role of Pineapple SWR1 COMPLEX 6 (AcSWC6) in Biotic and Abiotic Stress Response
Cited by: 9
Author(s): Bello Hassan Jakada, Mohammad Aslam, Beenish Fakher, Joseph G. Greaves, Zeyun Li, Weimin Liu, Linyi Lai, Oyekunle Adenike Ayoade, Yan Cheng, Shijiang Cao, Gang Li, Jer‐Ming Hu, Yuan Qin
Software Mentions: 3
Published: over 5 years ago

10.3390/biomedicines8090292

Anticancer Imidazoacridinone C-1311 is Effective in Androgen-Dependent and Androgen-Independent Prostate Cancer Cells
Cited by: 5
Author(s): Magdalena Niemira, Barbara Borowa-Mazgaj, Samuel B. Bader, Adrianna Moszyńska, Marcin Ratajewski, Kaja Karaś, Mirosław Kwaśniewski, Adam Krętowski, Zofia Mazerska, Ester M. Hammond, Anna Skwarska
Software Mentions: 3
Published: over 4 years ago

10.1093/pcp/pcaa077

Molecular and Physiological Alterations in Chickpea under Elevated CO2 Concentrations
Cited by: 14
Author(s): P. Palit, Raju Ghosh, Priya Tolani, Avijit Tarafdar, Annapurna Chitikineni, Prasad Bajaj, Mamta Sharma, Himabindu Kudapa, Rajeev K. Varshney
Software Mentions: 3
Published: over 4 years ago

10.1186/s12920-019-0643-z

RNA-seq from archival FFPE breast cancer samples: molecular pathway fidelity and novel discovery
Cited by: 30
Author(s): Nathan D. Pennock, Sonali Jindal, Wesley Horton, Duanchen Sun, Jayasri Narasimhan, Lucia Carbone, Suzanne S. Fei, Robert P. Searles, Christina A. Harrington, Julja Burchard, Sheila Weinmann, Pepper Schedin, Zheng Xia
Software Mentions: 3
Published: almost 5 years ago

10.3389/fgene.2021.583568

Aberrantly DNA Methylated-Differentially Expressed Genes in Pancreatic Cancer Through an Integrated Bioinformatics Approach
Cited by: 4
Author(s): Haifeng Sun, Rui Xin, Changjun Zheng, Ge Huang
Software Mentions: 3
Published: over 3 years ago

10.18632/aging.101541

Comprehensive analysis of circRNA expression pattern and circRNA-miRNA-mRNA network in the pathogenesis of atherosclerosis in rabbits
Cited by: 129
Author(s): Feng Zhang, Ruyou Zhang, Xiaoyu Zhang, Yingnan Wu, Xiaoying Li, Shuang Zhang, Wen-ying Hou, Yu Ding, Jiawei Tian, Lei Sun, Xiangdong Kong
Software Mentions: 3
Published: about 6 years ago

10.3389/fonc.2020.00504

Targeted Deep Sequencing Uncovers Cryptic KIT Mutations in KIT/PDGFRA/SDH/RAS-P Wild-Type GIST
Cited by: 14
Author(s): Annalisa Astolfi, Valentina Indio, Margherita Nannini, Maristella Saponara, Angela Schipani, Antonio De Leo, Annalisa Altimari, Bruno Vincenzi, Danila Comandini, Giovanni Grignani, Paola Secchiero, Milena Urbini, Maria Abbondanza Pantaleo
Software Mentions: 3
Published: over 4 years ago

10.3389/fgene.2020.586814

Differential Expression and Bioinformatics Analysis of circRNA in Non-small Cell Lung Cancer
Cited by: 21
Author(s): Qian Sun, Xia Li, Muchen Xu, Li Zhang, Haiwei Zuo, Yong Xin, Longzhen Zhang, Ping Gong
Software Mentions: 3
Published: about 4 years ago

10.1155/2018/9415409

Time-Course Comparative Metabolite Profiling under Osmotic Stress in Tolerant and Sensitive Tibetan Hulless Barley
Cited by: 50
Author(s): Hongjun Yuan, Xingquan Zeng, Jian Shi, Qijun Xu, Yulin Wang, Dunzhu Jabu, Zha Sang, Nyima Tashi
Software Mentions: 3
Published: almost 6 years ago

10.1155/2020/5156304

Comprehensive Analyses of miRNA-mRNA Network and Potential Drugs in Idiopathic Pulmonary Arterial Hypertension
Cited by: 8
Author(s): Chan Li, Zeyu Zhang, Qian Xu, Ruizheng Shi
Software Mentions: 3
Published: over 4 years ago

10.1155/2020/2071593

High Expression of UBB, RAC1, and ITGB1 Predicts Worse Prognosis among Nonsmoking Patients with Lung Adenocarcinoma through Bioinformatics Analysis
Cited by: 11
Author(s): Huan Deng, Yo-Ping Huang, Li Wang, Ming Chen
Software Mentions: 3
Published: about 4 years ago

10.3389/fonc.2020.577530

GPR115 Contributes to Lung Adenocarcinoma Metastasis Associated With LAMC2 and Predicts a Poor Prognosis
Cited by: 13
Author(s): Yingjing Wang, Muqi Shi, Nan Yang, Xiaoyu Zhou, Liqin Xu
Software Mentions: 3
Published: about 4 years ago

10.3390/microorganisms7040096

Transcriptomic Responses to Thermal Stress and Varied Phosphorus Conditions in Fugacium kawagutii
Cited by: 27
Author(s): Senjie Lin, Liying Yu, Huan Zhang
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1007909

Dual role of DMXL2 in olfactory information transmission and the first wave of spermatogenesis
Cited by: 10
Author(s): Clara Gobé, Maëva Elzaïat, Nicolas Meunier, Marjolaine André, Eli Sellem, Patrice Congar, Luc Jouneau, Aurélie Allais‐Bonnet, Ikrame Naciri, Bruno Passet, Eric Pailhoux, Maëlle Pannetier
Software Mentions: 3
Published: almost 6 years ago

10.1186/s40168-016-0181-2

Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals
Cited by: 468
Author(s): Kate L. Ormerod, David Wood, Nancy Lachner, Shaan L. Gellatly, Joshua Daly, Jeremy Parsons, Cristiana G. O. Dal’Molin, Robin W. Palfreyman, Lars K. Nielsen, Matthew A. Cooper, Mark Morrison, Philip M. Hansbro, Philip Hugenholtz
Software Mentions: 3
Published: over 8 years ago

10.1155/2021/2545459

Identification of Differentially Expressed circRNAs, miRNAs, and Genes in Patients Associated with Cartilaginous Endplate Degeneration
Cited by: 0
Author(s): Haiwei Xu, Yongjin Li, Jianhua Li, Zhenxin Huo, Guowang Li, Lilong Du, Lijun Tian, Bei Xu
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-017-10613-6

Metagenomic evidence of stronger effect of stylo (legume) than bahiagrass (grass) on taxonomic and functional profiles of the soil microbial community
Cited by: 15
Author(s): Zhihui Yang, Honghui Zhu, Shenglei Fu, Qing Yao
Software Mentions: 3
Published: about 7 years ago

10.3389/fgene.2020.594824

The Active Constituent From Gynostemma Pentaphyllum Prevents Liver Fibrosis Through Regulation of the TGF-β1/NDRG2/MAPK Axis
Cited by: 8
Author(s): Hui Huang, Kuifeng Wang, Qian Liu, Feihong Ji, Hu Zhou, Shanhua Fang, Jiansheng Zhu
Software Mentions: 3
Published: about 4 years ago

10.18632/oncotarget.27732

Novel combination therapy for melanoma induces apoptosis via a gap junction positive feedback mechanism
Cited by: 3
Author(s): Archis Bagati, Timothy C. Hutcherson, Zethan Koch, Joseph Pechette, Hossein Dianat, Cory Higley, Lisa Chiu, Yesul Song, Jay B. Shah, Elana Chazen, Andrew Nicolais, Peter Casey, Kyle Thompson, K. Burke, Mikhail A. Nikiforov, J. Zirnheld, Shoshanna N. Zucker
Software Mentions: 3
Published: about 4 years ago

10.1155/2020/3040839

The Oncogenic Role of CENPA in Hepatocellular Carcinoma Development: Evidence from Bioinformatic Analysis
Cited by: 17
Author(s): Yuan Zhang, Lei Yang, Jia Shi, Yao Lu, Xiaorong Chen, Zongguo Yang
Software Mentions: 3
Published: over 4 years ago

10.3389/fgene.2020.589326

Temporospatial Flavonoids Metabolism Variation in Ginkgo biloba Leaves
Cited by: 17
Author(s): Ying Guo, Tongli Wang, Fangfang Fu, Guibin Wang
Software Mentions: 3
Published: about 4 years ago

10.1155/2019/1649423

A 6-Gene Risk Signature Predicts Survival of Glioblastoma Multiforme
Cited by: 14
Author(s): J. W. Zhao, Le Wang, Guozhang Hu, Bo Wei
Software Mentions: 3
Published: over 5 years ago

10.1111/mmi.14362

<i>Mycobacterium tuberculosis</i>requires glyoxylate shunt and reverse methylcitrate cycle for lactate and pyruvate metabolism
Cited by: 66
Author(s): Agnese Serafini, Lendl Tan, Stuart Horswell, Steven Howell, Greenwood Dj, Deborah M. Hunt, Minh-Duy Phan, Mark A. Schembri, Mercedes Monteleone, Christine R Montague, Warwick J. Britton, Acely Garza-Garcia, Ambrosius P. Snijders, Brian C. VanderVen, Maximiliano G. Gutiérrez, Nicholas P. West, Luiz Pedro S. de Carvalho
Software Mentions: 3
Published: over 5 years ago

10.7150/jca.35801

Identification of a six-lncRNA signature based on a competing endogenous RNA network for predicting the risk of tumour recurrence in bladder cancer patients
Cited by: 8
Author(s): Danfeng Zhao, Qiang Peng, Lu Wang, Cong Li, Yulin Lv, Yong Liu, Zhichao Wang, Ruizhe Fang, Jiaqi Wang, Zhongqing Liu, Wanhai Xu
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12920-018-0467-2

Glucocorticoid-driven transcriptomes in human airway epithelial cells: commonalities, differences and functional insight from cell lines and primary cells
Cited by: 29
Author(s): Mahmoud Mostafa, Christopher F. Rider, Suharsh Shah, Suzanne L. Traves, Paul M. Gordon, Anna Miller‐Larsson, Richard Leigh, Robert Newton
Software Mentions: 3
Published: almost 6 years ago

10.1155/2020/3858373

A Robust Signature Based on Autophagy-Associated LncRNAs for Predicting Prognosis in Lung Adenocarcinoma
Cited by: 12
Author(s): Mi Zhou, Wei Shao, Haiyun Dai, Xin Zhu
Software Mentions: 3
Published: over 4 years ago

10.3389/fped.2019.00265

Lung Microbiota and Pulmonary Inflammatory Cytokines Expression Vary in Children With Tracheomalacia and Adenoviral or Mycoplasma pneumoniae Pneumonia
Cited by: 19
Author(s): Heping Wang, Qian Zhou, Wenkui Dai, Xin Feng, Zhiwei Lü, Zhenyu Yang, Yanhong Liu, Guoli Xie, Yonghong Yang, Kunling Shen, Yinhu Li, Shuai Cheng Li, Ximing Xu, Yongshun Shen, Dongfang Li, Yuejie Zheng
Software Mentions: 3
Published: over 5 years ago

10.3389/fphar.2021.632206

LINC01116 Promotes Doxorubicin Resistance in Osteosarcoma by Epigenetically Silencing miR-424-5p and Inducing Epithelial-Mesenchymal Transition
Cited by: 11
Author(s): Ran Li, Qing Ruan, Jia Zheng, Butian Zhang, Hongliang Yang
Software Mentions: 3
Published: over 3 years ago

10.3389/fphar.2020.559618

Metabolomics Deciphers Potential Targets of Xuefu Zhuyu Decoction Against Traumatic Brain Injury in Rat
Cited by: 9
Author(s): Teng Li, En Hu, Pengfei Li, Zhaoyu Yang, Yi-Ming Wu, Ruoqi Ding, Xiaofei Zhu, Tao Tang, Yang Wang
Software Mentions: 3
Published: about 4 years ago

10.3389/fphar.2020.546589

The Enhanced Pharmacological Effects of Modified Traditional Chinese Medicine in Attenuation of Atherosclerosis Is Driven by Modulation of Gut Microbiota
Cited by: 12
Author(s): JI Wen-yan, Ting Jiang, Zheng Sun, Fei Teng, Chenchen Ma, Shi Huang, Shi Fang Yan
Software Mentions: 3
Published: about 4 years ago

Projects: cran: pheatmap

Papers Mentioning pheatmap 2,572