cran: pheatmap | Projects | Ecosyste.ms: Papers

10.3389/fcell.2021.709498

The Dynamic Changes of Transcription Factors During the Development Processes of Human Biparental and Uniparental Embryos
Cited by: 3
Author(s): Chenxi Zhang, Conghui Li, Ling Yang, Lizhi Leng, Dragomirka Jovic, Jun Wang, Fang Fang, Guibo Li, Depeng Zhao, Xuemei Li, Lin Lin, Yonglun Luo, Lars Bolund, Jinrong Huang, Ge Lin, Fengping Xu
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-017-07975-2

Signs of innate immune activation and premature immunosenescence in psoriasis patients
Cited by: 30
Author(s): Liisi Šahmatova, Elena Sügis, Marina Šunina, Helen Hermann, Ele Prans, Maire Pihlap, Kristi Abram, Ana Rebane, Hedi Peterson, Pärt Peterson, Külli Kingo, Kai Kisand
Software Mentions: 4
Published: about 9 years ago

10.3389/fcell.2021.649168

Pan-Cancer Genome-Wide DNA Methylation Analyses Revealed That Hypermethylation Influences 3D Architecture and Gene Expression Dysregulation in HOXA Locus During Carcinogenesis of Cancers
Cited by: 3
Author(s): Gang Liu, Zhenhao Liu, Xiaomeng Sun, Xiaoqiong Xia, Yunhe Liu, Lei Liu
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2021.727302

Identification of Genes and MicroRNAs Affecting Pre-harvest Sprouting in Rice (Oryza sativa L.) by Transcriptome and Small RNAome Analyses
Cited by: 4
Author(s): Minsu Park, Wookap Choi, Sang Yoon Shin, Hongman Moon, Dowhan Lee, Yun Shil Gho, Ki Hong Jung, Jong Seong Jeon, Chanseok Shin
Software Mentions: 4
Published: about 5 years ago

10.7554/eLife.35786

Human axial progenitors generate trunk neural crest cells in vitro
Cited by: 70
Author(s): Thomas J.R. Frith, Ilaria Granata, Matthew Wind, Erin Stout, Oliver Thompson, Katrin Neumann, Dylan Stavish, Paul R. Heath, Daniel Ortmann, James Hackland, Konstantinos Anastassiadis, Mina Gouti, James Briscoe, Valerie Wilson, Stuart L. Johnson, Marysia Placzek, Mario Rosario Guarracino, Peter W. Andrews, Anestis Tsakiridis
Software Mentions: 4
Published: about 8 years ago

10.3389/fpls.2016.01744

Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals
Cited by: 17
Author(s): Erich M. Schwarz, Adrienne Roeder
Software Mentions: 4
Published: almost 10 years ago

10.3389/fphys.2018.00825

Transcriptomics and Fitness Data Reveal Adaptive Plasticity of Thermal Tolerance in Oysters Inhabiting Different Tidal Zones
Cited by: 28
Author(s): Ao Li, Wei Wang, Kai Song, Guofan Zhang
Software Mentions: 4
Published: about 8 years ago

10.3390/ijms22041904

Genome-Wide Identification and Characterization of Wheat 14-3-3 Genes Unravels the Role of TaGRF6-A in Salt Stress Tolerance by Binding MYB Transcription Factor
Cited by: 18
Author(s): Wenna Shao, Wang Chen, Xiaofu Zhu, Xiaoyi Zhou, Yingying Jin, Chuang Zhan, Gensen Liu, Xi Liu, Dongfang Ma, Yongli Qiao
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2018.00272

Ethylene-Related Gene Expression Networks in Wood Formation
Cited by: 34
Author(s): Carolin Seyfferth, Bernard A. Wessels, Soile Jokipii-Lukkari, Björn Sundberg, Nicolas Delhomme, Judith Felten, Hannele Tuominen
Software Mentions: 4
Published: over 8 years ago

10.3390/ijms22041591

Reciprocal Changes in miRNA Expression with Pigmentation and Decreased Proliferation Induced in Mouse B16F1 Melanoma Cells by l-Tyrosine and 5-Bromo-2′-Deoxyuridine
Cited by: 4
Author(s): Hernán Mauricio Rivera, Esther Natalia Muñoz, Daniel Osuna, Mauro Florez, Michael Carvajal, Luis Alberto Gómez
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms22020736

Omics Analysis of Blood-Responsive Regulon in Bordetella pertussis Identifies a Novel Essential T3SS Substrate
Cited by: 2
Author(s): Jakub Držmíšek, Daniel Štipl, Denisa Petráčková, Branislav Večerek, Ana Dienstbier
Software Mentions: 4
Published: over 5 years ago

10.1186/s13018-021-02658-1

Potential genes and pathways associated with heterotopic ossification derived from analyses of gene expression profiles
Cited by: 5
Author(s): Zhanyu Yang, Delong Liu, Rui Guan, Li X, Yiwei Wang, Bin Sheng
Software Mentions: 4
Published: about 5 years ago

10.1186/s13048-021-00802-3

Small RNA sequencing reveals distinct nuclear microRNAs in pig granulosa cells during ovarian follicle growth
Cited by: 7
Author(s): Derek Toms, Bo Pan, Yinshan Bai, Julang Li
Software Mentions: 4
Published: over 5 years ago

10.15252/embj.2018101430

Cyclin F‐dependent degradation of E2F7 is critical for <scp>DNA</scp> repair and G2‐phase progression
Cited by: 33
Author(s): Ruixue Yuan, Qingwu Liu, Hendrika A. Segeren, Laurensia Yuniati, Daniele Guardavaccaro, Robert Jan Lebbink, Bart Westendorp, Alain de Bruin
Software Mentions: 4
Published: about 7 years ago

10.3389/fpls.2021.640789

Coupling Between the Responses of Plants, Soil, and Microorganisms Following Grazing Exclusion in an Overgrazed Grassland
Cited by: 13
Author(s): Zhen Wang, Xiliang Li, Baoming Ji, P.C. Struik, Ke Jin, Shiming Tang
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-020-77433-z

High CD45 expression of CD8+ and CD4+ T cells correlates with the size of HIV-1 reservoir in blood
Cited by: 7
Author(s): Stefan Petkov, Yonas Bekele, Tadepally Lakshmikanth, Bo Hejdeman, Maurizio Zazzi, Petter Brodin, Francesca Chiodi
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-017-11327-5

Genome-wide identification and co-expression network analysis provide insights into the roles of auxin response factor gene family in chickpea
Cited by: 26
Author(s): Vikash Singh, Mohan Singh Rajkumar, Rohini Garg, Mukesh Jain
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-019-49817-3

An integrated genome-wide multi-omics analysis of gene expression dynamics in the preimplantation mouse embryo
Cited by: 35
Author(s): Steffen Israel, Markus Ernst, Olympia E. Psathaki, Hannes C.A. Drexler, Ellen Casser, Yutaka Suzuki, Wojciech Makałowski, Michele Boiani, Georg Fuellen, Leila Taher
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-020-63434-5

Identification of tipifarnib sensitivity biomarkers in T-cell acute lymphoblastic leukemia and T-cell lymphoma
Cited by: 5
Author(s): Ruth Alonso‐Alonso, Rufino Mondéjar, Nerea Martínez, Nuria García-Díaz, Cristina Fernández Pérez, David Merino, Marta Rodríguez, Anna Esteve‐Codina, Berta Fusté, Marta Gut, Francis Burrows, Catherine Scholz, José P. Vaqué, Antonio Gualberto, Miguel Á. Piris
Software Mentions: 4
Published: over 6 years ago

10.3389/fonc.2021.641487

Establishment of a Prognostic Model for Hepatocellular Carcinoma Based on Endoplasmic Reticulum Stress-Related Gene Analysis
Cited by: 14
Author(s): Peng Liu, Jinhong Wei, Feiyu Mao, Zechang Xin, Heng Duan, Yan Du, Xiaodong Wang, Zhennan Li, Jianjun Qian, Jie Yao
Software Mentions: 4
Published: over 5 years ago

10.18632/oncotarget.26322

Differential gene expression in human tissue resident regulatory T cells from lung, colon, and blood
Cited by: 13
Author(s): Magdalena Niedzielska, Elisabeth Israelsson, B. Angermann, Ben S. Sidders, Maryam Clausen, Matthew C. Catley, Rajneesh Malhotra, Céline Dumont
Software Mentions: 4
Published: almost 8 years ago

10.3389/fpls.2015.00918

Genome-wide survey and comprehensive expression profiling of Aux/IAA gene family in chickpea and soybean
Cited by: 61
Author(s): Vikash Singh, Mukesh Jain
Software Mentions: 4
Published: almost 11 years ago

10.3390/ijms21093129

Bisphenol A Exposure in utero Disrupts Hypothalamic Gene Expression Particularly Genes Suspected in Autism Spectrum Disorders and Neuron and Hormone Signaling
Cited by: 18
Author(s): Anne De Piante Henriksen, Alejandro Andrade, Erin P. Harris, Emilie F. Rissman, Jennifer T. Wolstenholme
Software Mentions: 4
Published: over 6 years ago

10.3389/fonc.2021.688882

MiR-1236-3p Inhibits the Proliferation, Invasion, and Migration of Colon Cancer Cells and Hinders Epithelial-Mesenchymal Transition by Targeting DCLK3
Cited by: 9
Author(s): Yang Zhao, Hongyi Zhou, Jie Shen, Shaohui Yang, Ke Deng, Qi Li, Wei Cui
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-017-14978-6

Usefulness and limitations of sample pooling for environmental DNA metabarcoding of freshwater fish communities
Cited by: 72
Author(s): Hirotoshi Sato, Yuki Sogo, Hideyuki Doi, Hiroki Yamanaka
Software Mentions: 4
Published: almost 9 years ago

10.1002/2211-5463.12982

Metabolomic analysis of fibrotic mice combined with public RNA‐Seq human lung data reveal potential diagnostic biomarker candidates for lung fibrosis
Cited by: 8
Author(s): Yosui Nojima, Yoshito Takeda, Yohei Maeda, Takeshi Bamba, Eiichiro Fukusaki, Mari Itoh, Kenji Mizuguchi, Atsushi Kumanogoh
Software Mentions: 4
Published: almost 6 years ago

10.7554/eLife.56554

Cytotoxic T cells swarm by homotypic chemokine signalling
Cited by: 32
Author(s): Jorge Luis Galeano Niño, Sophie V. Pageon, Szun S. Tay, Feyza Colakoglu, Daryan Kempe, Jack D. Hywood, Jessica K Mazalo, James Cremasco, Matt Govendir, Laura F. Dagley, Ku‐Lung Hsu, Simone Rizzetto, Jerzy Zieba, Gregory Rice, Victoria Prior, Geraldine M. O’Neill, Richard J. Williams, David R. Nisbet, Belinda Kramer, Andrew I. Webb, Fabio Luciani, Mark Read, Maté Biro
Software Mentions: 4
Published: almost 6 years ago

10.1155/2021/1557968

Prognostic Analysis of Lung Adenocarcinoma Based on DNA Methylation Regulatory Factor Clustering
Cited by: 1
Author(s): Chen Yang, Chongquan Zhong, Shujun Bao, Fang Zheng, Jing Tang
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-018-29186-z

Inter-individual differences in contamination profiles as tracer of social group association in stranded sperm whales
Cited by: 5
Author(s): Joseph Schnitzler, Marianna Pinzone, Marijke Autenrieth, Abbo van Neer, Lonneke L. IJsseldijk, Jonathan L. Barber, Rob Deaville, Paul D. Jepson, Andrew Brownlow, Tobias Schaffeld, Jean-Pierre Thomé, Ralph Tiedemann, Krishna Das, Ursula Siebert
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-018-32198-4

Experimental Adaptation of the Yellow Fever Virus to the Mosquito Aedes albopictus and Potential risk of urban epidemics in Brazil, South America
Cited by: 26
Author(s): Fadila Amraoui, Adrien Pain, Géraldine Piorkowski, Marie Vazeille, Dinair Couto-Lima, Xavier de Lamballerie, Ricardo Lourenço‐de‐Oliveira, Anna‐Bella Failloux
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-020-78439-3

Production of the antimicrobial compound tetrabromopyrrole and the Pseudomonas quinolone system precursor, 2-heptyl-4-quinolone, by a novel marine species Pseudoalteromonas galatheae sp. nov.
Cited by: 14
Author(s): Sara Skøtt Paulsen, Thomas Isbrandt, Markus Kirkegaard, Yannick Buijs, Mikael Lenz Strube, Eva C. Sonnenschein, Thomas Ostenfeld Larsen, Lone Gram
Software Mentions: 3
Published: over 5 years ago

10.3389/fped.2019.00265

Lung Microbiota and Pulmonary Inflammatory Cytokines Expression Vary in Children With Tracheomalacia and Adenoviral or Mycoplasma pneumoniae Pneumonia
Cited by: 19
Author(s): Heping Wang, Qian Zhou, Wenkui Dai, Xin Feng, Zhiwei Lü, Zhenyu Yang, Yanhong Liu, Guoli Xie, Yonghong Yang, Kunling Shen, Yinhu Li, Shuai Cheng Li, Ximing Xu, Yongshun Shen, Dongfang Li, Yuejie Zheng
Software Mentions: 3
Published: about 7 years ago

10.3389/fphar.2021.632206

LINC01116 Promotes Doxorubicin Resistance in Osteosarcoma by Epigenetically Silencing miR-424-5p and Inducing Epithelial-Mesenchymal Transition
Cited by: 11
Author(s): Ran Li, Qing Ruan, Jia Zheng, Butian Zhang, Hongliang Yang
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-40974-z

G-protein Gα13 functions as a cytoskeletal and mitochondrial regulator to restrain osteoclast function
Cited by: 11
Author(s): Shinichi Nakano, Kenzo Inoue, Cheng Xu, Zhonghao Deng, Viktoriya Syrovatkina, G. Vitone, Liang Zhao, Xin‐Yun Huang, Baohong Zhao
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-019-41625-z

Improved survival prognostication of node-positive malignant melanoma patients utilizing shotgun proteomics guided by histopathological characterization and genomic data
Cited by: 12
Author(s): Lázaro Betancourt, Krzysztof Pawłowski, Jonatan Eriksson, Attila Marcell Szász, Shamik Mitra, Indira Pla, Charlotte Welinder, Henrik Ekedahl, Per Broberg, Roger Appelqvist, Maria Yakovleva, Y. Sugita, Kenichi Miharada, Christian Ingvar, Lotta Lundgren, Bo Baldetorp, Håkan Olsson, Melinda Rezeli, Elisabet Wieslander, Péter Horvatovich, Johan Malm, Göran Jönsson, György Markó-Varga
Software Mentions: 3
Published: over 7 years ago

10.1002/2211-5463.12737

Transcriptome analysis of roots from resistant and susceptible rice varieties infected with Hirschmanniella mucronata
Cited by: 7
Author(s): Xiaotang Sun, Lei Zhang, Ziqing Tang, Xugen Shi, Jian Ma, Ruqiang Cui
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-020-77623-9

UBC9 coordinates inflammation affecting development of bladder cancer
Cited by: 15
Author(s): Xiaoliang Huang, Yuting Tao, Jiamin Gao, Xiaoting Zhou, Shaomei Tang, Caiwang Deng, Zhiyong Lai, Xinggu Lin, Qiuyan Wang, Tianyu Li
Software Mentions: 3
Published: almost 6 years ago

10.3389/fphar.2020.559618

Metabolomics Deciphers Potential Targets of Xuefu Zhuyu Decoction Against Traumatic Brain Injury in Rat
Cited by: 9
Author(s): Teng Li, En Hu, Pengfei Li, Zhaoyu Yang, Yi-Ming Wu, Ruoqi Ding, Xiaofei Zhu, Tao Tang, Yang Wang
Software Mentions: 3
Published: almost 6 years ago

10.3389/fphar.2020.546589

The Enhanced Pharmacological Effects of Modified Traditional Chinese Medicine in Attenuation of Atherosclerosis Is Driven by Modulation of Gut Microbiota
Cited by: 12
Author(s): JI Wen-yan, Ting Jiang, Zheng Sun, Fei Teng, Chenchen Ma, Shi Huang, Shi Fang Yan
Software Mentions: 3
Published: almost 6 years ago

10.1515/med-2021-0241

A four-lncRNA signature for predicting prognosis of recurrence patients with gastric cancer
Cited by: 3
Author(s): Qiang Chen, Zunqi Hu, Xin Zhang, Ziran Wei, Hongbing Fu, Dejun Yang, Qing-Qing Cai
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-76139-6

Multi-level analysis of reproduction in an Antarctic midge identifies female and male accessory gland products that are altered by larval stress and impact progeny viability
Cited by: 16
Author(s): Geoffrey Finch, Sonya Nandyal, Carlie Perretta, Benjamin Davies, Andrew J. Rosendale, Christopher J. Holmes, J. D. Gantz, Drew E. Spacht, Samuel T. Bailey, Marc E. Rothenberg, Kennan Oyen, Elise M. Didion, Souvik Chakraborty, Richard Lee, David L. Denlinger, Stephen F. Matter, Geoffrey M. Attardo, Matthew T. Weirauch, Joshua B. Benoit
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-019-47866-2

Early life exposures shape the CD4+ T cell transcriptome, influencing proliferation, differentiation, and mitochondrial dynamics later in life
Cited by: 6
Author(s): Catherine G. Burke, Jason R. Myers, Lisbeth A. Boulé, Christina M. Post, Paul S. Brookes, B. Paige Lawrence
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-020-75904-x

Diverse and abundant resistome in terrestrial and aquatic vertebrates revealed by transcriptional analysis
Cited by: 13
Author(s): Yanmei Chen, Edward C. Holmes, Chen Xiao, Jiaxin Tian, Xian-Dan Lin, Xin-Cheng Qin, Wen-Hua Gao, Jing Liu, Zhongdao Wu, Yongzhen Zhang
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-020-74540-9

Transcriptome analysis of alternative splicing in the pathogen life cycle in human foreskin fibroblasts infected with Trypanosoma cruzi
Cited by: 4
Author(s): Hyeim Jung, Seonggyun Han, Younghee Lee
Software Mentions: 3
Published: almost 6 years ago

10.18632/oncotarget.25572

Transcriptome profiling of anti-müllerian hormone treated preantral/small antral mouse ovary follicles
Cited by: 2
Author(s): Zia Ur Rehman, Faheem Ahmed Khan, Farmanullah, Hira Sajjad Talpur, Qing Liu, Shenhe Liu, Liguo Yang
Software Mentions: 3
Published: about 8 years ago

10.3389/fonc.2020.01418

Bacterial Alterations in Post-Cholecystectomy Patients Are Associated With Colorectal Cancer
Cited by: 24
Author(s): Xinhua Ren, Jianming Xu, Yuanyuan Zhang, Guodong Chen, Yiwen Zhang, Qing Huang, Yulan Liu
Software Mentions: 3
Published: about 6 years ago

10.1002/2211-5463.13078

Identification of key modules and hub genes in glioblastoma multiforme based on co‐expression network analysis
Cited by: 5
Author(s): Chun Li, Bangming Pu, Lianzhi Gu, Mingwei Zhang, Hongping Shen, Yuan Yuan, Lishang Liao
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-57806-0

Novel Analytical Platform For Robust Identification of Cell Migration Inhibitors
Cited by: 6
Author(s): Parinyachat Somchai, Kriengkrai Phongkitkarun, Patipark Kueanjinda, Supawan Jamnongsong, Kulthida Vaeteewoottacharn, Vor Luvira, Seiji Okada, Siwanon Jirawatnotai, Somponnat Sampattavanich
Software Mentions: 3
Published: over 6 years ago

10.1002/2211-5463.12897

A digital mRNA expression signature to classify challenging Spitzoid melanocytic neoplasms
Cited by: 1
Author(s): Lisa M. Hillen, Milan S. Geybels, Ivelina Spassova, Juergen C. Becker, Thilo Gambichler, Marjan Garmyn, Axel zur Hausen, Joost van den Oord, Véronique Winnepenninckx
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-59469-3

Targeting Oncogenic Super Enhancers in MYC-Dependent AML Using a Small Molecule Activator of NR4A Nuclear Receptors
Cited by: 18
Author(s): S. Greg Call, Ryan P. Duren, Anil K. Panigrahi, Huu Lam Nguyen, Pablo R. Freire, Sandra L. Grimm, Cristian Coarfa, Orla M. Conneely
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-61688-7

Prognostic implications of EGFR protein expression in sporadic colorectal tumors: Correlation with copy number status, mRNA levels and miRNA regulation
Cited by: 15
Author(s): Sofía Del Carmen, Luis A. Corchete, Ruth Gervás, A Barrio Rodriguez, María José García, José A. Sánchez Alcázar, José María Sánchez García, Óscar Bengoechea, Luís Muñoz-Bellvis, José María Sayagués, Mónica Viñarás Abad
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-68074-3

Tumor microenvironment characterization in head and neck cancer identifies prognostic and immunotherapeutically relevant gene signatures
Cited by: 25
Author(s): Mengqi Huo, Ying Zhang, Zhong Chen, Suxin Zhang, Yong-Rui Bao, Tianke Li
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-020-63148-8

Comprehensive immunogenomic landscape analysis of prognosis-related genes in head and neck cancer
Cited by: 22
Author(s): Lei Li, Xiaoli Wang, Qian Lei, Chuanzheng Sun, Yan Xi, Ran Chen, Yongming He
Software Mentions: 3
Published: over 6 years ago

10.1002/2211-5463.12993

TYROBP is a potential prognostic biomarker of clear cell renal cell carcinoma
Cited by: 15
Author(s): Ping Wu, T. Xiang, Jing Wang, Run Lv, Guangzhen Wu
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-020-63607-2

Regulatory relationship between quality variation and environment of Cistanche deserticola in three ecotypes based on soil microbiome analysis
Cited by: 17
Author(s): Xiao Sun, Li Zhang, Jin Pei, Linfang Huang
Software Mentions: 3
Published: over 6 years ago

10.18632/oncotarget.24598

Tracking cellular and molecular changes in a species-specific manner during experimental tumor progression in vivo
Cited by: 9
Author(s): Émilie Indersie, Katarzyna B. Hooks, Caroline Capdevielle, Monique Fabrè, Nathalie Dugot‐Senant, Angélique Desplat, Sébastien Lepreux, Aksam Merched, Christophe Grosset, Martin Hagedorn
Software Mentions: 3
Published: over 8 years ago

10.1128/JVI.01010-21

Kinetic Multi-omic Analysis of Responses to SARS-CoV-2 Infection in a Model of Severe COVID-19
Cited by: 19
Author(s): Angelene M. Cantwell, Harinder Singh, Maryann P. Platt, Yonghao Yu, Yi‐Han Lin, Yuji Ikeno, Gene B. Hubbard, Yan Xiang, Norberto González-Juarbe, Peter H. Dube
Software Mentions: 3
Published: almost 5 years ago

10.1186/s13018-020-01839-8

Bioinformatics analysis of differentially expressed genes in subchondral bone in early experimental osteoarthritis using microarray data
Cited by: 2
Author(s): Wang Zhao, Yong Ji, Hongwei Bao
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-020-66939-1

Soluble silica stimulates osteogenic differentiation and gap junction communication in human dental follicle cells
Cited by: 17
Author(s): Pamela Uribe, Anders Johansson, Ravin Jugdaohsingh, Jonathan J. Powell, Catarina Magnusson, Marcela Dávila, Anna Westerlund, Maria Ransjö
Software Mentions: 3
Published: about 6 years ago

10.18632/oncotarget.24035

Reversible LSD1 inhibition with HCI-2509 induces the p53 gene expression signature and disrupts the MYCN signature in high-risk neuroblastoma cells
Cited by: 21
Author(s): Sumati Gupta, Kelly Doyle, Timothy Mosbruger, Andrew Butterfield, Alexis Weston, Allison Ast, Mohan R. Kaadige, Anupam Verma, Sunil Sharma
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-020-66986-8

ssGSEA score-based Ras dependency indexes derived from gene expression data reveal potential Ras addiction mechanisms with possible clinical implications
Cited by: 100
Author(s): Ming Yi, Dwight V. Nissley, Frank McCormick, Robert M. Stephens
Software Mentions: 3
Published: about 6 years ago

10.18632/oncotarget.19483

Identification of hub genes involved in the development of hepatocellular carcinoma by transcriptome sequencing
Cited by: 8
Author(s): Yongchang Zheng, Junyu Long, Liangcai Wu, Haohai Zhang, Lin Li, Ying Zheng, Anqiang Wang, Jianzhen Lin, Xiaobo Yang, Xinting Sang, Ke Hu, Jie Pan, Haitao Zhao
Software Mentions: 3
Published: about 9 years ago

10.18632/oncotarget.9037

Integrative analysis reveals clinical phenotypes and oncogenic potentials of long non-coding RNAs across 15 cancer types
Cited by: 16
Author(s): Zelin Wang, Bin Li, Stephen R. Piccolo, Xiaoqin Zhang, Junhao Li, Hui Zhou, Jianhua Yang, Liang‐Hu Qu
Software Mentions: 3
Published: over 10 years ago

10.3389/fcell.2021.661243

Ligand–Receptor Interactions Elucidate Sex-Specific Pathways in the Trajectory From Primordial Germ Cells to Gonia During Human Development
Cited by: 11
Author(s): Arend W. Overeem, Yolanda W. Chang, Jeroen Spruit, Celine M. Roelse, Susana M. Chuva de Sousa Lopes
Software Mentions: 3
Published: about 5 years ago

10.3389/fonc.2021.595259

A Voxel-Based Radiographic Analysis Reveals the Biological Character of Proneural-Mesenchymal Transition in Glioblastoma
Cited by: 3
Author(s): Tengfei Qi, Xiangqi Meng, Zhenyu Wang, Xinyu Wang, Nan Sun, Jianguang Ming, Lejia Ren, Chuanlu Jiang, Jinquan Cai
Software Mentions: 3
Published: over 5 years ago

10.1155/2021/4664955

Systematic Profiling of mRNA Splicing Reveals the Prognostic Predictor and Potential Therapeutic Target for Glioblastoma Multiforme
Cited by: 5
Author(s): Botao Zhang, Quanyou Wu, Shujun Cheng, Wenbin Li
Software Mentions: 3
Published: about 5 years ago

10.3389/fcell.2020.582282

Increased Expression of Zyxin and Its Potential Function in Androgenetic Alopecia
Cited by: 5
Author(s): Qingmei Liu, Xiaofeng Shi, Yue Zhang, Yan Huang, Kai Yang, Yulong Tang, Yanyun Ma, Yuting Zhang, Ji'an Wang, Li Zhang, Qi Zhang, Lei Xiao, Jinran Lin, Jiucun Wang, Wenyu Wu
Software Mentions: 3
Published: over 5 years ago

10.3389/fphys.2020.565240

Identification of Pathways and Key Genes in Venous Remodeling After Arteriovenous Fistula by Bioinformatics Analysis
Cited by: 10
Author(s): Jie Kong, Zhen Wang, Bin Zhao, Maofeng Gong, Jianbin Zhang, Zhaoxuan Lu, Yangyi Zhou, Changhong Liang, Haobo Su, Wensheng Lou, Guoping Chen, Jianping Gu, Xu He, Jianyan Wen
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2021.634960

Life on the Rocks: First Insights Into the Microbiota of the Threatened Aquatic Rheophyte Hanseniella heterophylla
Cited by: 3
Author(s): Witoon Purahong, Shakhawat Hossen, Ali Nawaz, Dolaya Sadubsarn, Benjawan Tanunchai, Sven Dommert, Matthias Noll, La‐aw Ampornpan, Petcharat Werukamkul, Tesfaye Wubet
Software Mentions: 3
Published: about 5 years ago

10.3389/fpls.2018.00485

Metabolome Integrated Analysis of High-Temperature Response in Pinus radiata
Cited by: 39
Author(s): Monica Escandón, Mónica Meijón, Luís Valledor, Jesús Pascual, Glória Pinto, María Jesús Cañal
Software Mentions: 3
Published: over 8 years ago

10.1186/s12974-020-01953-8

Coding transcriptome analyses reveal altered functions underlying immunotolerance of PEG-fused rat sciatic nerve allografts
Cited by: 2
Author(s): Tyler A. Smith, Cameron L. Ghergherehchi, Haley O. Tucker, George D. Bittner
Software Mentions: 3
Published: almost 6 years ago

10.15252/embr.201948375

Class I <scp>HDAC</scp> inhibitors enhance <scp>YB</scp> ‐1 acetylation and oxidative stress to block sarcoma metastasis
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Author(s): Amal M. El-Naggar, Syam Prakash Somasekharan, Yemin Wang, Hongwei Cheng, Gian Luca Negri, Melvin Pan, Xue Q. Wang, Alberto Delaidelli, Bo Rafn, Jordan Cran, Fan Zhang, Haifeng Zhang, Shane Colborne, Martin Gleave, Anna Mandinova, Nancy Kedersha, Christopher S. Hughes, Didier Surdez, Olivier Delattre, Yuzhuo Wang, David G. Huntsman, Gregg B. Morin, Poul H. Sorensen
Software Mentions: 3
Published: almost 7 years ago

10.3389/fpls.2014.00615

Bayesian phylogeny of sucrose transporters: ancient origins, differential expansion and convergent evolution in monocots and dicots
Cited by: 39
Author(s): Duo Peng, Xi Gu, Liang‐Jiao Xue, James H. Leebens‐Mack, Chung‐Jui Tsai
Software Mentions: 3
Published: almost 12 years ago

10.3389/fpls.2021.721253

Genome-Wide Identification, Evolution, and Expression Analysis of LBD Transcription Factor Family in Bread Wheat (Triticum aestivum L.)
Cited by: 12
Author(s): Zhenyu Wang, Ruoyu Zhang, Yue Cheng, Pengzheng Lei, Weining Song, Wenbin Zheng, Xiaojun Nie
Software Mentions: 3
Published: about 5 years ago

10.3389/fpls.2017.02130

Characterization of the Primary Metabolome of Brachystegia boehmii and Colophospermum mopane under Different Fire Regimes in Miombo and Mopane African Woodlands
Cited by: 7
Author(s): Jossias A. Duvane, Tiago F. Jorge, Ivete Maquia, Natasha Ribeiro, Ana I. Ribeiro‐Barros, Carla António
Software Mentions: 3
Published: over 8 years ago

10.3389/fcimb.2021.641920

Persistent Bacterial Coinfection of a COVID-19 Patient Caused by a Genetically Adapted Pseudomonas aeruginosa Chronic Colonizer
Cited by: 44
Author(s): Jiuxin Qu, Zhao Cai, Yumei Liu, Xiangke Duan, Shuhong Han, Jihong Liu, Yuao Zhu, Zhichao Jiang, Yingdan Zhang, Chao Zhuo, Yang Liu, Yingxia Liu, Lei Liu, Liang Yang
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2018.01603

The Beneficial Endophytic Fungus Fusariumsolani Strain K Alters Tomato Responses Against Spider Mites to the Benefit of the Plant
Cited by: 46
Author(s): Maria L. Pappas, Maria Liapoura, Dimitra Papantoniou, Marianna Avramidou, Nektarios Kavroulakis, Alexander Weinhold, George D. Broufas, Kalliope Κ. Papadopoulou
Software Mentions: 3
Published: almost 8 years ago

10.3389/fpls.2021.638792

Commonly and Specifically Activated Defense Responses in Maize Disease Lesion Mimic Mutants Revealed by Integrated Transcriptomics and Metabolomics Analysis
Cited by: 4
Author(s): Xiaohuan Mu, Jiankun Li, Zhuangzhuang Dai, XU Li-ping, Tianyuan Fan, Jie Teng, Mengyao Chen, Mingyue Gou
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2021.614926

Analysis of Shoot Architecture Traits in Edamame Reveals Potential Strategies to Improve Harvest Efficiency
Cited by: 4
Author(s): Kshitiz Dhakal, Qian Zhu, Bo Zhang, Mao Li, Song Li
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms221810073

Systemic Expression of Genes Involved in the Plant Defense Response Induced by Wounding in Senna tora
Cited by: 11
Author(s): Ji-Nam Kang, Woo-Haeng Lee, So Youn Won, Saemin Chang, Jaemin Hong, Tae‐Jin Oh, Si Myung Lee, Sang-Ho Kang
Software Mentions: 3
Published: almost 5 years ago

10.1002/ece3.5638

Effect of coupled reduced irrigation and nitrogen fertilizer on soil mite community composition in a wheat field
Cited by: 9
Author(s): Kewei Chen, Fang Ouyang, Xianghui Liu, Ji Ma, Fenghua Zhao, Zhu Ouyang, Feng Ge
Software Mentions: 3
Published: almost 7 years ago

10.3390/ijms22147298

Reprogramming mRNA Expression in Response to Defect in RNA Polymerase III Assembly in the Yeast Saccharomyces cerevisiae
Cited by: 1
Author(s): Izabela Rudzińska, Małgorzata Cieśla, Tomasz W. Turowski, Alicja Armatowska, Ewa Leśniewska, Magdalena Boguta
Software Mentions: 3
Published: about 5 years ago

10.3389/fpls.2018.01332

Genome-Wide Identification, Characterization, and Expression Profiling of the Legume BZR Transcription Factor Gene Family
Cited by: 28
Author(s): Yueying Li, Liangliang He, Jing Li, Jianghua Chen, Changning Liu
Software Mentions: 3
Published: almost 8 years ago

10.3390/ijms22052442

Immunogenomic Identification for Predicting the Prognosis of Cervical Cancer Patients
Cited by: 10
Author(s): Qun Wang, Aurelia Vattai, Theresa� Vilsmaier, Till Kaltofen, Alexander Steger, Doris Mayr, Sven Mahner, Udo Jeschke, H Heidegger
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms22052282

The RNAi Mechanism Regulates a New Exonuclease Gene Involved in the Virulence of Mucorales
Cited by: 8
Author(s): Carlos Pèrez-Arques, María Isabel Navarro-Mendoza, Laura Murcia, Eusebio Navarro, Victoriano Garre
Software Mentions: 3
Published: over 5 years ago

10.18632/oncotarget.27732

Novel combination therapy for melanoma induces apoptosis via a gap junction positive feedback mechanism
Cited by: 3
Author(s): Archis Bagati, Timothy C. Hutcherson, Zethan Koch, Joseph Pechette, Hossein Dianat, Cory Higley, Lisa Chiu, Yesul Song, Jay B. Shah, Elana Chazen, Andrew Nicolais, Peter Casey, Kyle Thompson, K. Burke, Mikhail A. Nikiforov, J. Zirnheld, Shoshanna N. Zucker
Software Mentions: 3
Published: almost 6 years ago

10.3389/fpls.2021.719873

Can Inoculation With the Bacterial Biostimulant Enterobacter sp. Strain 15S Be an Approach for the Smarter P Fertilization of Maize and Cucumber Plants?
Cited by: 10
Author(s): Mónica Yorlady Alzate Zuluaga, André Luiz Martinez de Oliveira, Fabio Valentinuzzi, Raphael Tiziani, Youry Pii, Tanja Mimmo, Stefano Cesco
Software Mentions: 3
Published: about 5 years ago

10.3390/ijms22020514

Transcriptome Analysis and Identification of Lipid Genes in Physaria lindheimeri, a Genetic Resource for Hydroxy Fatty Acids in Seed Oil
Cited by: 3
Author(s): Grace Q. Chen, Won Nyeong Kim, Kumiko Johnson, Mid-Eum Park, Kyeong‐Ryeol Lee, Hyun Uk Kim
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2015.01058

Identification of Putative Candidate Genes for Water Stress Tolerance in Canola (Brassica napus)
Cited by: 64
Author(s): Jing Zhang, Annaliese S. Mason, Jian Wu, Sheng Liu, Xuechen Zhang, Tao Luo, R. J. Redden, Jacqueline Batley, Liyong Hu, Guijun Yan
Software Mentions: 3
Published: almost 11 years ago

10.3389/fonc.2020.00504

Targeted Deep Sequencing Uncovers Cryptic KIT Mutations in KIT/PDGFRA/SDH/RAS-P Wild-Type GIST
Cited by: 14
Author(s): Annalisa Astolfi, Valentina Indio, Margherita Nannini, Maristella Saponara, Angela Schipani, Antonio De Leo, Annalisa Altimari, Bruno Vincenzi, Danila Comandini, Giovanni Grignani, Paola Secchiero, Milena Urbini, Maria Abbondanza Pantaleo
Software Mentions: 3
Published: over 6 years ago

10.3389/fpls.2021.684619

Identification, Characterization, and Expression Profile Analysis of the mTERF Gene Family and Its Role in the Response to Abiotic Stress in Barley (Hordeum vulgare L.)
Cited by: 4
Author(s): Tingting Li, Wenqiu Pan, Yiyuan Yuan, Ying Liu, Yihan Li, Xiaoyu Wu, Fei Wang, Licao Cui
Software Mentions: 3
Published: about 5 years ago

10.3389/fcell.2021.669145

Landscape of Prognostic m6A RNA Methylation Regulators in Hepatocellular Carcinoma to Aid Immunotherapy
Cited by: 7
Author(s): Qianhui Xu, Hao Xu, Ruilong Deng, Nanjun Li, Ruiqi Mu, Zhixuan Qi, Yunuo Shen, Zijie Wang, Jingchao Wen, Jiaxin Zhao, Di Weng, Wen Huang
Software Mentions: 3
Published: about 5 years ago

10.3389/fpls.2017.01866

Transcriptomic and Hormonal Analyses Reveal that YUC-Mediated Auxin Biogenesis Is Involved in Shoot Regeneration from Rhizome in Cymbidium
Cited by: 11
Author(s): Yang Liu, Hai-Liang Zhang, He-Rong Guo, Li Xie, Ruizhen Zeng, Xiangqian Zhang, Zhisheng Zhang
Software Mentions: 3
Published: almost 9 years ago

10.3390/ijms21176322

The Lysine Specific Demethylase-1 Negatively Regulates the COL9A1 Gene in Human Articular Chondrocytes
Cited by: 6
Author(s): Anne-Laure Durand, Alexandre Dufour, E. Aubert-Foucher, Christine Oger-Desfeux, Marielle Pasdeloup, Sébastien Lustig, Elvire Servien, Gualter Vaz, Emeline Perrier‐Groult, Frédéric Mallein-Gerin, J. Lafont
Software Mentions: 3
Published: about 6 years ago

10.3389/fonc.2020.577530

GPR115 Contributes to Lung Adenocarcinoma Metastasis Associated With LAMC2 and Predicts a Poor Prognosis
Cited by: 13
Author(s): Yingjing Wang, Muqi Shi, Nan Yang, Xiaoyu Zhou, Liqin Xu
Software Mentions: 3
Published: almost 6 years ago

10.1002/fsn3.1841

A comparative UPLC‐Q‐Orbitrap‐MS untargeted metabolomics investigation of different parts of Clausena lansium (Lour.) Skeels
Cited by: 15
Author(s): Ruiyi Fan, Cheng Peng, Xinxin Zhang, Diyang Qiu, Genlin Mao, Yusheng Lu, Jiwu Zeng
Software Mentions: 3
Published: almost 6 years ago

10.3389/fvets.2020.00277

Changes in the Salivary Proteome Associated With Canine Pyometra
Cited by: 12
Author(s): Lorena Franco‐Martínez, Anita Horvatić, Andrea Gelemanović, Marko Samardžija, Vladimir Mrljak, María Dolores Contreras-Aguilar, Silvia Martı́nez-Subiela, Roman Dąbrowski
Software Mentions: 3
Published: about 6 years ago

10.3389/fvets.2020.00205

The Use of Sheep Movement Data to Inform Design and Interpretation of Slaughterhouse-Based Surveillance Activities
Cited by: 2
Author(s): Julie M. Stirling, Jude Eze, Geoffrey Foster, Aaron Reeves, George J. Gunn, Sue C. Tongue
Software Mentions: 3
Published: over 6 years ago

10.1002/fsn3.2291

Dynamic changes of volatile compounds and bacterial diversity during fourth to seventh rounds of Chinese soy sauce aroma liquor
Cited by: 12
Author(s): Lingchang Wang, Kai Zhong, Aimin Luo, Jian Chen, Yi Shen, Xi Wang, Qiang He, Hong Gao
Software Mentions: 3
Published: over 5 years ago

10.1002/eji.202048788

CD5 levels define functionally heterogeneous populations of naïve human CD4+ T cells
Cited by: 15
Author(s): Aditi Sood, Marie-Ève Lebel, Mengqi Dong, Marilaine Fournier, Suzanne Vobecky, Élie Haddad, Jean-Sébastien Delisle, Judith N. Mandl, Nienke Vrisekoop, Heather J. Melichar
Software Mentions: 3
Published: over 5 years ago

Projects: cran: pheatmap

Science Score: 75/100

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Papers Mentioning pheatmap 2,572