Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: pheatmap

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/pheatmap

Pretty Heatmaps
17 versions
Latest release: almost 6 years ago
77 dependent packages
37,681 downloads last month

Papers Mentioning pheatmap 2,572

10.1038/s41598-018-25998-1
FACS-Seq analysis of Pax3-derived cells identifies non-myogenic lineages in the embryonic forelimb
Cited by: 8
Author(s): Arun Singh, Cheng-Chi Chang, Hsiao-Yen Ma, Stephen A. Ramsey, Theresa M. Filtz, Chrissa Kioussi
Software Mentions: 4
Published: over 6 years ago
10.1038/s41598-018-25110-7
Transcriptional Profiling of Somatostatin Interneurons in the Spinal Dorsal Horn
Cited by: 43
Author(s): Alexander Chamessian, Michael Young, Yawar J. Qadri, Temugin Berta, Ru-Rong Ji, Thomas Van de Ven
Software Mentions: 4
Published: over 6 years ago
10.3389/fpls.2015.00918
Genome-wide survey and comprehensive expression profiling of Aux/IAA gene family in chickpea and soybean
Cited by: 61
Author(s): Vikash Singh, Mukesh Jain
Software Mentions: 4
Published: about 9 years ago
10.1038/s41598-018-23207-7
Comparative High-Resolution Transcriptome Sequencing of Lymphoma Cell Lines and de novo Lymphomas Reveals Cell-Line-Specific Pathway Dysregulation
Cited by: 10
Author(s): Leila Taher, Julia Beck, Wen Li, Catrin Roolf, Jan T. Soller, Barbara C. Rütgen, Sabine E. Hammer, Murali Chodisetti, Sina Sender, Katharina A Sterenczak, Georg Fuellen, Christian Junghanß, Bertram Brenig, Ingo Nolte, Ekkehard Schütz, Hugo Murua Escobar
Software Mentions: 4
Published: over 6 years ago
10.1038/s41598-018-20347-8
Characterization of soil bacterial, archaeal and fungal communities inhabiting archaeological human-impacted layers at Monte Iato settlement (Sicily, Italy)
Cited by: 20
Author(s): J.A. Siles, Birgit Öhlinger, Tomáš Cajthaml, Erich Kistler, Rosa Margesin
Software Mentions: 4
Published: almost 7 years ago
10.1186/s13018-021-02658-1
Potential genes and pathways associated with heterotopic ossification derived from analyses of gene expression profiles
Cited by: 5
Author(s): Zhanyu Yang, Delong Liu, Rui Guan, Li X, Yiwei Wang, Bin Sheng
Software Mentions: 4
Published: over 3 years ago
10.3389/fgene.2021.641117
Gene Expression Analysis Suggests Immunological Changes of Peripheral Blood Monocytes in the Progression of Patients With Coronary Artery Disease
Cited by: 6
Author(s): Chunyue Wang, Chenxi Song, Qianqian Liu, Rui Zhang, Rui Fu, Hao Wang, Yin Ding, Weihua Song, Haitao Zhang, Kefei Dou
Software Mentions: 4
Published: over 3 years ago
10.3389/fgene.2021.608936
Whole Genome Level Analysis of the Wnt and DIX Gene Families in Mice and Their Coordination Relationship in Regulating Cardiac Hypertrophy
Cited by: 6
Author(s): Zhongchao Gai, Yujiao Wang, Lü Tian, Guoli Gong, Jieqiong Zhao
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-020-77433-z
High CD45 expression of CD8+ and CD4+ T cells correlates with the size of HIV-1 reservoir in blood
Cited by: 7
Author(s): Stefan Petkov, Yonas Bekele, Tadepally Lakshmikanth, Bo Hejdeman, Maurizio Zazzi, Petter Brodin, Francesca Chiodi
Software Mentions: 4
Published: about 4 years ago
10.3389/fgene.2021.684281
A Robust Seven-Gene Signature Associated With Tumor Microenvironment to Predict Survival Outcomes of Patients With Stage III–IV Lung Adenocarcinoma
Cited by: 3
Author(s): Hao Zhao, Xuening Zhang, Liting Guo, Songhe Shi, Ciyong Lu
Software Mentions: 4
Published: about 3 years ago
10.1038/s41598-017-14978-6
Usefulness and limitations of sample pooling for environmental DNA metabarcoding of freshwater fish communities
Cited by: 72
Author(s): Hirotoshi Sato, Yuki Sogo, Hideyuki Doi, Hiroki Yamanaka
Software Mentions: 4
Published: about 7 years ago
10.18632/oncotarget.14286
Comprehensive tissue-specific gene set enrichment analysis and transcription factor analysis of breast cancer by integrating 14 gene expression datasets
Cited by: 23
Author(s): Wen‐Xing Li, Kan He, Ling Tang, Shao‐Xing Dai, Gong‐Hua Li, Wen Lv, Yicheng Guo, Sanqi An, Guoying Wu, Dahai Liu, Jing‐Fei Huang
Software Mentions: 4
Published: almost 8 years ago
10.3389/fgene.2020.599834
An Integrated Transcriptome Analysis Reveals IGFBP7 Upregulation in Vasculature in Traumatic Brain Injury
Cited by: 3
Author(s): Jianhao Wang, Xiangyi Deng, Yuan Xie, Jiefu Tang, Ziwei Zhou, Fan Yang, Qiyuan He, Qingze Cao, Lei Zhang, Liqun He
Software Mentions: 4
Published: almost 4 years ago
10.3389/fonc.2020.576615
Integrated Analysis of Distant Metastasis-Associated Genes and Potential Drugs in Colon Adenocarcinoma
Cited by: 6
Author(s): Min Wu, Weiyang Lou, Meng Lou, Peifen Fu, Xiaofang Yu
Software Mentions: 4
Published: about 4 years ago
10.3389/fgene.2019.00217
Genomic, Transcriptomic, and Epigenomic Features Differentiate Genes That Are Relevant for Muscular Polyunsaturated Fatty Acids in the Common Carp
Cited by: 18
Author(s): Hanyuan Zhang, Peng Xu, Yanliang Jiang, Zixia Zhao, Jianxin Feng, Ruyu Tai, Chuanju Dong, Jian Xu
Software Mentions: 4
Published: over 5 years ago
10.3389/fgene.2020.00294
Methylation-Driven Genes Identified as Novel Prognostic Indicators for Thyroid Carcinoma
Cited by: 12
Author(s): Liting Lv, Liyu Cao, Guoqing Hu, Qinyan Shen, Jiaming Wu
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-017-07975-2
Signs of innate immune activation and premature immunosenescence in psoriasis patients
Cited by: 30
Author(s): Liisi Šahmatova, Elena Sügis, Marina Šunina, Helen Hermann, Ele Prans, Maire Pihlap, Kristi Abram, Ana Rebane, Hedi Peterson, Pärt Peterson, Külli Kingo, Kai Kisand
Software Mentions: 4
Published: over 7 years ago
10.3389/fgene.2020.597459
Pearl Sac Gene Expression Profiles Associated With Pearl Attributes in the Silver-Lip Pearl Oyster, Pinctada maxima
Cited by: 9
Author(s): Carmel McDougall, Felipe Aguilera, Ali Shokoohmand, Patrick Moase, Bernard M. Degnan
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-017-11327-5
Genome-wide identification and co-expression network analysis provide insights into the roles of auxin response factor gene family in chickpea
Cited by: 26
Author(s): Vikash Singh, Mohan Singh Rajkumar, Rohini Garg, Mukesh Jain
Software Mentions: 4
Published: about 7 years ago
10.1186/s13048-021-00802-3
Small RNA sequencing reveals distinct nuclear microRNAs in pig granulosa cells during ovarian follicle growth
Cited by: 7
Author(s): Derek Toms, Bo Pan, Yinshan Bai, Julang Li
Software Mentions: 4
Published: over 3 years ago
10.3389/fonc.2021.688882
MiR-1236-3p Inhibits the Proliferation, Invasion, and Migration of Colon Cancer Cells and Hinders Epithelial-Mesenchymal Transition by Targeting DCLK3
Cited by: 9
Author(s): Yang Zhao, Hongyi Zhou, Jie Shen, Shaohui Yang, Ke Deng, Qi Li, Wei Cui
Software Mentions: 4
Published: about 3 years ago
10.3389/fimmu.2017.01199
Plasmodium berghei NK65 in Combination with IFN-γ Induces Endothelial Glucocorticoid Resistance via Sustained Activation of p38 and JNK
Cited by: 9
Author(s): Karolina Zielińska, Lode De Cauwer, Sofie Knoops, Kristof Van der Molen, Alexander Sneyers, Jonathan Thommis, J. Brian de Souza, Ghislain Opdenakker, Karolien De Bosscher, Philippe E. Van den Steen
Software Mentions: 4
Published: about 7 years ago
10.3389/fgene.2021.741608
Identification of Key Regulators of Hepatitis C Virus-Induced Hepatocellular Carcinoma by Integrating Whole-Genome and Transcriptome Sequencing Data
Cited by: 7
Author(s): L. Chen, Wei Zhang, Yiran Ben
Software Mentions: 4
Published: about 3 years ago
10.7554/eLife.56554
Cytotoxic T cells swarm by homotypic chemokine signalling
Cited by: 32
Author(s): Jorge Luis Galeano Niño, Sophie V. Pageon, Szun S. Tay, Feyza Colakoglu, Daryan Kempe, Jack D. Hywood, Jessica K Mazalo, James Cremasco, Matt Govendir, Laura F. Dagley, Ku‐Lung Hsu, Simone Rizzetto, Jerzy Zieba, Gregory Rice, Victoria Prior, Geraldine M. O’Neill, Richard J. Williams, David R. Nisbet, Belinda Kramer, Andrew I. Webb, Fabio Luciani, Mark Read, Maté Biro
Software Mentions: 4
Published: about 4 years ago
10.1038/s41598-020-75999-2
Loss of PHF6 leads to aberrant development of human neuron-like cells
Cited by: 2
Author(s): Anna Fliedner, Anne Gregor, Fulvia Ferrazzi, Arif B. Ekici, Heinrich Sticht, Christiane Zweier
Software Mentions: 4
Published: about 4 years ago
10.18632/oncotarget.26322
Differential gene expression in human tissue resident regulatory T cells from lung, colon, and blood
Cited by: 13
Author(s): Magdalena Niedzielska, Elisabeth Israelsson, B. Angermann, Ben S. Sidders, Maryam Clausen, Matthew C. Catley, Rajneesh Malhotra, Céline Dumont
Software Mentions: 4
Published: about 6 years ago
10.3389/fgene.2020.598743
A Pan-Cancer Study of Epidermal Growth Factor-Like Domains 6/7/8 as Therapeutic Targets in Cancer
Cited by: 3
Author(s): Shanping Shi, Ting Ma, Yang Xi
Software Mentions: 4
Published: almost 4 years ago
10.18632/oncotarget.19483
Identification of hub genes involved in the development of hepatocellular carcinoma by transcriptome sequencing
Cited by: 8
Author(s): Yongchang Zheng, Junyu Long, Liangcai Wu, Haohai Zhang, Lin Li, Ying Zheng, Anqiang Wang, Jianzhen Lin, Xiaobo Yang, Xinting Sang, Ke Hu, Jie Pan, Haitao Zhao
Software Mentions: 3
Published: over 7 years ago
10.18632/oncotarget.27732
Novel combination therapy for melanoma induces apoptosis via a gap junction positive feedback mechanism
Cited by: 3
Author(s): Archis Bagati, Timothy C. Hutcherson, Zethan Koch, Joseph Pechette, Hossein Dianat, Cory Higley, Lisa Chiu, Yesul Song, Jay B. Shah, Elana Chazen, Andrew Nicolais, Peter Casey, Kyle Thompson, K. Burke, Mikhail A. Nikiforov, J. Zirnheld, Shoshanna N. Zucker
Software Mentions: 3
Published: about 4 years ago
10.3389/fcimb.2020.615876
Niche-Specific Adaptive Evolution of Lactobacillus plantarum Strains Isolated From Human Feces and Paocai
Cited by: 10
Author(s): Qiqi Pan, Shi Cen, Leilei Yu, Fengwei Tian, Hao Zhang, Qixiao Zhai
Software Mentions: 3
Published: almost 4 years ago
10.3389/fcimb.2020.608298
Analysis of Long Non-Coding RNA in Cryptosporidium parvum Reveals Significant Stage-Specific Antisense Transcription
Cited by: 18
Author(s): Yiran Li, Rodrigo P. Baptista, Adam Sateriale, Boris Striepen, Jessica C. Kissinger
Software Mentions: 3
Published: almost 4 years ago
10.3389/fgene.2021.564780
Distinct Extracellular RNA Profiles in Different Plasma Components
Cited by: 8
Author(s): Jing Jia, Shangdong Yang, Jinyong Huang, Hong Zheng, Ying He, Liang Wang
Software Mentions: 3
Published: over 3 years ago
10.3389/fonc.2020.01418
Bacterial Alterations in Post-Cholecystectomy Patients Are Associated With Colorectal Cancer
Cited by: 24
Author(s): Xinhua Ren, Jianming Xu, Yuanyuan Zhang, Guodong Chen, Yiwen Zhang, Qing Huang, Yulan Liu
Software Mentions: 3
Published: over 4 years ago
10.18632/oncotarget.25572
Transcriptome profiling of anti-müllerian hormone treated preantral/small antral mouse ovary follicles
Cited by: 2
Author(s): Zia Ur Rehman, Faheem Ahmed Khan, Farmanullah, Hira Sajjad Talpur, Qing Liu, Shenhe Liu, Liguo Yang
Software Mentions: 3
Published: over 6 years ago
10.3389/fonc.2021.595259
A Voxel-Based Radiographic Analysis Reveals the Biological Character of Proneural-Mesenchymal Transition in Glioblastoma
Cited by: 3
Author(s): Tengfei Qi, Xiangqi Meng, Zhenyu Wang, Xinyu Wang, Nan Sun, Jianguang Ming, Lejia Ren, Chuanlu Jiang, Jinquan Cai
Software Mentions: 3
Published: over 3 years ago
10.18632/oncotarget.24598
Tracking cellular and molecular changes in a species-specific manner during experimental tumor progression <i>in vivo</i>
Cited by: 9
Author(s): Émilie Indersie, Katarzyna B. Hooks, Caroline Capdevielle, Monique Fabrè, Nathalie Dugot‐Senant, Angélique Desplat, Sébastien Lepreux, Aksam Merched, Christophe Grosset, Martin Hagedorn
Software Mentions: 3
Published: over 6 years ago
10.18632/oncotarget.24035
Reversible LSD1 inhibition with HCI-2509 induces the p53 gene expression signature and disrupts the MYCN signature in high-risk neuroblastoma cells
Cited by: 21
Author(s): Sumati Gupta, Kelly Doyle, Timothy Mosbruger, Andrew Butterfield, Alexis Weston, Allison Ast, Mohan R. Kaadige, Anupam Verma, Sunil Sharma
Software Mentions: 3
Published: almost 7 years ago
10.3389/fonc.2020.00504
Targeted Deep Sequencing Uncovers Cryptic KIT Mutations in KIT/PDGFRA/SDH/RAS-P Wild-Type GIST
Cited by: 14
Author(s): Annalisa Astolfi, Valentina Indio, Margherita Nannini, Maristella Saponara, Angela Schipani, Antonio De Leo, Annalisa Altimari, Bruno Vincenzi, Danila Comandini, Giovanni Grignani, Paola Secchiero, Milena Urbini, Maria Abbondanza Pantaleo
Software Mentions: 3
Published: over 4 years ago
10.3389/fgene.2021.741325
Multiomics Analysis Reveals the Prognostic Non-tumor Cell Landscape in Glioblastoma Niches
Cited by: 0
Author(s): Zixuan Xiao, Wei Zhang, Guanzhang Li, Wendong Li, Liang-In Lin, Taixiang Sun, Yufei He, Guang Liu, Lu Wang, Xiaohan Han, Hao Wen, Yong Liu, Yifan Chen, Haoyu Wang, Jing Li, Yubo Fan, Jing Zhang
Software Mentions: 3
Published: about 3 years ago
10.3389/fonc.2020.577530
GPR115 Contributes to Lung Adenocarcinoma Metastasis Associated With LAMC2 and Predicts a Poor Prognosis
Cited by: 13
Author(s): Yingjing Wang, Muqi Shi, Nan Yang, Xiaoyu Zhou, Liqin Xu
Software Mentions: 3
Published: about 4 years ago
10.18632/oncotarget.9037
Integrative analysis reveals clinical phenotypes and oncogenic potentials of long non-coding RNAs across 15 cancer types
Cited by: 16
Author(s): Zelin Wang, Bin Li, Stephen R. Piccolo, Xiaoqin Zhang, Junhao Li, Hui Zhou, Jianhua Yang, Liang‐Hu Qu
Software Mentions: 3
Published: over 8 years ago
10.3389/fped.2019.00265
Lung Microbiota and Pulmonary Inflammatory Cytokines Expression Vary in Children With Tracheomalacia and Adenoviral or Mycoplasma pneumoniae Pneumonia
Cited by: 19
Author(s): Heping Wang, Qian Zhou, Wenkui Dai, Xin Feng, Zhiwei Lü, Zhenyu Yang, Yanhong Liu, Guoli Xie, Yonghong Yang, Kunling Shen, Yinhu Li, Shuai Cheng Li, Ximing Xu, Yongshun Shen, Dongfang Li, Yuejie Zheng
Software Mentions: 3
Published: over 5 years ago
10.3389/fphar.2021.632206
LINC01116 Promotes Doxorubicin Resistance in Osteosarcoma by Epigenetically Silencing miR-424-5p and Inducing Epithelial-Mesenchymal Transition
Cited by: 11
Author(s): Ran Li, Qing Ruan, Jia Zheng, Butian Zhang, Hongliang Yang
Software Mentions: 3
Published: over 3 years ago
10.3389/fphar.2020.559618
Metabolomics Deciphers Potential Targets of Xuefu Zhuyu Decoction Against Traumatic Brain Injury in Rat
Cited by: 9
Author(s): Teng Li, En Hu, Pengfei Li, Zhaoyu Yang, Yi-Ming Wu, Ruoqi Ding, Xiaofei Zhu, Tao Tang, Yang Wang
Software Mentions: 3
Published: about 4 years ago
10.3389/fphar.2020.546589
The Enhanced Pharmacological Effects of Modified Traditional Chinese Medicine in Attenuation of Atherosclerosis Is Driven by Modulation of Gut Microbiota
Cited by: 12
Author(s): JI Wen-yan, Ting Jiang, Zheng Sun, Fei Teng, Chenchen Ma, Shi Huang, Shi Fang Yan
Software Mentions: 3
Published: about 4 years ago
10.3389/fgene.2019.00373
Identification of Potential Crucial Genes Associated With the Pathogenesis and Prognosis of Endometrial Cancer
Cited by: 45
Author(s): Li Liu, Jiajing Lin, Haiyang He
Software Mentions: 3
Published: over 5 years ago
10.3389/fgene.2019.00561
Genome-Wide Identification and Homoeologous Expression Analysis of PP2C Genes in Wheat (Triticum aestivum L.)
Cited by: 44
Author(s): Xiao‐Lan Yu, Jiapeng Han, Efan Wang, Jie Xiao, Rui Hu, Guangxiao Yang, Guoqing He
Software Mentions: 3
Published: over 5 years ago
10.1155/2021/4664955
Systematic Profiling of mRNA Splicing Reveals the Prognostic Predictor and Potential Therapeutic Target for Glioblastoma Multiforme
Cited by: 5
Author(s): Botao Zhang, Quanyou Wu, Shujun Cheng, Wenbin Li
Software Mentions: 3
Published: over 3 years ago
10.3389/fgene.2020.589076
Identification of mRNAs and lncRNAs Involved in the Regulation of Follicle Development in Goat
Cited by: 7
Author(s): Zhifeng Zhao, Xian Zou, Tingting Lu, Ming Deng, Yaokun Li, Yongqing Guo, Baoli Sun, Guangbin Liu, Dewu Liu
Software Mentions: 3
Published: almost 4 years ago
10.1155/2021/1557968
Prognostic Analysis of Lung Adenocarcinoma Based on DNA Methylation Regulatory Factor Clustering
Cited by: 1
Author(s): Chen Yang, Chongquan Zhong, Shujun Bao, Fang Zheng, Jing Tang
Software Mentions: 3
Published: over 3 years ago
10.3389/fgene.2021.648158
Identification and Comparative Analysis of Long Non-coding RNAs in High- and Low-Fecundity Goat Ovaries During Estrus
Cited by: 3
Author(s): Yaokun Li, Xiangping Xu, Ming Deng, Xian Zou, Zhifeng Zhao, Sixiu Huang, Dewu Liu, Guangbin Liu
Software Mentions: 3
Published: over 3 years ago
10.3389/fphys.2020.565240
Identification of Pathways and Key Genes in Venous Remodeling After Arteriovenous Fistula by Bioinformatics Analysis
Cited by: 10
Author(s): Jie Kong, Zhen Wang, Bin Zhao, Maofeng Gong, Jianbin Zhang, Zhaoxuan Lu, Yangyi Zhou, Changhong Liang, Haobo Su, Wensheng Lou, Guoping Chen, Jianping Gu, Xu He, Jianyan Wen
Software Mentions: 3
Published: almost 4 years ago
10.3389/fpls.2021.634960
Life on the Rocks: First Insights Into the Microbiota of the Threatened Aquatic Rheophyte Hanseniella heterophylla
Cited by: 3
Author(s): Witoon Purahong, Shakhawat Hossen, Ali Nawaz, Dolaya Sadubsarn, Benjawan Tanunchai, Sven Dommert, Matthias Noll, La‐aw Ampornpan, Petcharat Werukamkul, Tesfaye Wubet
Software Mentions: 3
Published: over 3 years ago
10.3389/fpls.2018.00485
Metabolome Integrated Analysis of High-Temperature Response in Pinus radiata
Cited by: 39
Author(s): Monica Escandón, Mónica Meijón, Luís Valledor, Jesús Pascual, Glória Pinto, María Jesús Cañal
Software Mentions: 3
Published: over 6 years ago
10.3389/fgene.2019.01045
Population Genetic Analysis of Modern and Ancient DNA Variations Yields New Insights Into the Formation, Genetic Structure, and Phylogenetic Relationship of Northern Han Chinese
Cited by: 25
Author(s): Pengyu Chen, Jian Wu, Li Luo, Hongyan Gao, Mengge Wang, Xing Zou, Yingxiang Li, Chen Gang, Haibo Luo, Limei Yu, Yanyan Han, Jia Fu, Guanglin He
Software Mentions: 3
Published: about 5 years ago
10.3389/fpls.2014.00615
Bayesian phylogeny of sucrose transporters: ancient origins, differential expansion and convergent evolution in monocots and dicots
Cited by: 39
Author(s): Duo Peng, Xi Gu, Liang‐Jiao Xue, James H. Leebens‐Mack, Chung‐Jui Tsai
Software Mentions: 3
Published: about 10 years ago
10.3389/fpls.2021.721253
Genome-Wide Identification, Evolution, and Expression Analysis of LBD Transcription Factor Family in Bread Wheat (Triticum aestivum L.)
Cited by: 12
Author(s): Zhenyu Wang, Ruoyu Zhang, Yue Cheng, Pengzheng Lei, Weining Song, Wenbin Zheng, Xiaojun Nie
Software Mentions: 3
Published: about 3 years ago
10.3389/fpls.2017.02130
Characterization of the Primary Metabolome of Brachystegia boehmii and Colophospermum mopane under Different Fire Regimes in Miombo and Mopane African Woodlands
Cited by: 7
Author(s): Jossias A. Duvane, Tiago F. Jorge, Ivete Maquia, Natasha Ribeiro, Ana I. Ribeiro‐Barros, Carla António
Software Mentions: 3
Published: almost 7 years ago
10.3389/fpls.2018.01603
The Beneficial Endophytic Fungus Fusariumsolani Strain K Alters Tomato Responses Against Spider Mites to the Benefit of the Plant
Cited by: 46
Author(s): Maria L. Pappas, Maria Liapoura, Dimitra Papantoniou, Marianna Avramidou, Nektarios Kavroulakis, Alexander Weinhold, George D. Broufas, Kalliope Κ. Papadopoulou
Software Mentions: 3
Published: about 6 years ago
10.3389/fpls.2021.638792
Commonly and Specifically Activated Defense Responses in Maize Disease Lesion Mimic Mutants Revealed by Integrated Transcriptomics and Metabolomics Analysis
Cited by: 4
Author(s): Xiaohuan Mu, Jiankun Li, Zhuangzhuang Dai, XU Li-ping, Tianyuan Fan, Jie Teng, Mengyao Chen, Mingyue Gou
Software Mentions: 3
Published: over 3 years ago
10.3389/fpls.2021.614926
Analysis of Shoot Architecture Traits in Edamame Reveals Potential Strategies to Improve Harvest Efficiency
Cited by: 4
Author(s): Kshitiz Dhakal, Qian Zhu, Bo Zhang, Mao Li, Song Li
Software Mentions: 3
Published: over 3 years ago
10.3389/fncel.2018.00528
Identification of Altered Developmental Pathways in Human Juvenile HD iPSC With 71Q and 109Q Using Transcriptome Profiling
Cited by: 24
Author(s): Karolina Świtońska, Wojciech J. Szlachcic, Luiza Handschuh, Paweł Wojciechowski, Łukasz Marczak, Michał Stelmaszczuk, Marek Figlerowicz, Maciej Figiel
Software Mentions: 3
Published: almost 6 years ago
10.3389/fgene.2021.583568
Aberrantly DNA Methylated-Differentially Expressed Genes in Pancreatic Cancer Through an Integrated Bioinformatics Approach
Cited by: 4
Author(s): Haifeng Sun, Rui Xin, Changjun Zheng, Ge Huang
Software Mentions: 3
Published: over 3 years ago
10.3389/fpls.2018.01332
Genome-Wide Identification, Characterization, and Expression Profiling of the Legume BZR Transcription Factor Gene Family
Cited by: 28
Author(s): Yueying Li, Liangliang He, Jing Li, Jianghua Chen, Changning Liu
Software Mentions: 3
Published: about 6 years ago
10.3389/fgene.2020.586814
Differential Expression and Bioinformatics Analysis of circRNA in Non-small Cell Lung Cancer
Cited by: 21
Author(s): Qian Sun, Xia Li, Muchen Xu, Li Zhang, Haiwei Zuo, Yong Xin, Longzhen Zhang, Ping Gong
Software Mentions: 3
Published: about 4 years ago
10.3389/fgene.2020.594824
The Active Constituent From Gynostemma Pentaphyllum Prevents Liver Fibrosis Through Regulation of the TGF-β1/NDRG2/MAPK Axis
Cited by: 8
Author(s): Hui Huang, Kuifeng Wang, Qian Liu, Feihong Ji, Hu Zhou, Shanhua Fang, Jiansheng Zhu
Software Mentions: 3
Published: about 4 years ago
10.3389/fpls.2021.719873
Can Inoculation With the Bacterial Biostimulant Enterobacter sp. Strain 15S Be an Approach for the Smarter P Fertilization of Maize and Cucumber Plants?
Cited by: 10
Author(s): Mónica Yorlady Alzate Zuluaga, André Luiz Martinez de Oliveira, Fabio Valentinuzzi, Raphael Tiziani, Youry Pii, Tanja Mimmo, Stefano Cesco
Software Mentions: 3
Published: over 3 years ago
10.3389/fgene.2020.589326
Temporospatial Flavonoids Metabolism Variation in Ginkgo biloba Leaves
Cited by: 17
Author(s): Ying Guo, Tongli Wang, Fangfang Fu, Guibin Wang
Software Mentions: 3
Published: about 4 years ago
10.3389/fpls.2015.01058
Identification of Putative Candidate Genes for Water Stress Tolerance in Canola (Brassica napus)
Cited by: 64
Author(s): Jing Zhang, Annaliese S. Mason, Jian Wu, Sheng Liu, Xuechen Zhang, Tao Luo, R. J. Redden, Jacqueline Batley, Liyong Hu, Guijun Yan
Software Mentions: 3
Published: about 9 years ago
10.3389/fgene.2020.00701
Chromosome Level Genome Assembly of Andrographis paniculata
Cited by: 11
Author(s): Ying Liang, Shanshan Chen, Kunhua Wei, Zijiang Yang, Shengchang Duan, Yihui Du, Peng Qu, Miao Jin, Wei Chen, Yang Dong
Software Mentions: 3
Published: over 4 years ago
10.3389/fpls.2021.684619
Identification, Characterization, and Expression Profile Analysis of the mTERF Gene Family and Its Role in the Response to Abiotic Stress in Barley (Hordeum vulgare L.)
Cited by: 4
Author(s): Tingting Li, Wenqiu Pan, Yiyuan Yuan, Ying Liu, Yihan Li, Xiaoyu Wu, Fei Wang, Licao Cui
Software Mentions: 3
Published: over 3 years ago
10.3389/fpls.2017.01866
Transcriptomic and Hormonal Analyses Reveal that YUC-Mediated Auxin Biogenesis Is Involved in Shoot Regeneration from Rhizome in Cymbidium
Cited by: 11
Author(s): Yang Liu, Hai-Liang Zhang, He-Rong Guo, Li Xie, Ruizhen Zeng, Xiangqian Zhang, Zhisheng Zhang
Software Mentions: 3
Published: about 7 years ago
10.1186/s12974-020-01953-8
Coding transcriptome analyses reveal altered functions underlying immunotolerance of PEG-fused rat sciatic nerve allografts
Cited by: 2
Author(s): Tyler A. Smith, Cameron L. Ghergherehchi, Haley O. Tucker, George D. Bittner
Software Mentions: 3
Published: about 4 years ago
10.3389/fvets.2020.00277
Changes in the Salivary Proteome Associated With Canine Pyometra
Cited by: 12
Author(s): Lorena Franco‐Martínez, Anita Horvatić, Andrea Gelemanović, Marko Samardžija, Vladimir Mrljak, María Dolores Contreras-Aguilar, Silvia Martı́nez-Subiela, Roman Dąbrowski
Software Mentions: 3
Published: over 4 years ago
10.3389/fvets.2020.00205
The Use of Sheep Movement Data to Inform Design and Interpretation of Slaughterhouse-Based Surveillance Activities
Cited by: 2
Author(s): Julie M. Stirling, Jude Eze, Geoffrey Foster, Aaron Reeves, George J. Gunn, Sue C. Tongue
Software Mentions: 3
Published: over 4 years ago
10.3390/ijms221810073
Systemic Expression of Genes Involved in the Plant Defense Response Induced by Wounding in Senna tora
Cited by: 11
Author(s): Ji-Nam Kang, Woo-Haeng Lee, So Youn Won, Saemin Chang, Jaemin Hong, Tae‐Jin Oh, Si Myung Lee, Sang-Ho Kang
Software Mentions: 3
Published: about 3 years ago
10.1038/s41598-017-10613-6
Metagenomic evidence of stronger effect of stylo (legume) than bahiagrass (grass) on taxonomic and functional profiles of the soil microbial community
Cited by: 15
Author(s): Zhihui Yang, Honghui Zhu, Shenglei Fu, Qing Yao
Software Mentions: 3
Published: about 7 years ago
10.3389/fgene.2021.703210
Identification and Validation of a PPP1R12A-Related Five-Gene Signature Associated With Metabolism to Predict the Prognosis of Patients With Prostate Cancer
Cited by: 3
Author(s): Zhihao Zou, Ren Liu, Yingke Liang, Rui Zhou, Qi-Shan Dai, Zhengxue Han, Minyao Jiang, Yangjia Zhuo, Yixun Zhang, Yuanfa Feng, Xinwen Zhu, Shanghua Cai, Jundong Lin, Zhenfeng Tang, Weide Zhong, Yu‐Xiang Liang
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-018-20518-7
Csde1 binds transcripts involved in protein homeostasis and controls their expression in an erythroid cell line
Cited by: 20
Author(s): Kat Moore, Nurcan Yağcı, Floris van Alphen, Nahuel A. Paolini, Rastislav Horos, Ntsiki M. Held, Riekelt H. Houtkooper, Emile van den Akker, Alexander B. Meijer, Peter A. C. ât Hoen, Marieke von Lindern
Software Mentions: 3
Published: almost 7 years ago
10.3389/fgene.2021.619056
Dynamic Transcriptome Sequencing of Bovine Alphaherpesvirus Type 1 and Host Cells Carried Out by a Multi-Technique Approach
Cited by: 5
Author(s): Dóra Tombácz, Norbert Moldován, Gábor Torma, Tibor Nagy, Ákos Hornyák, Zsolt Csabai, Gábor Gulyás, Miklós Boldogkői, Victoria A Jefferson, Zoltán Zádori, Florencia Meyer, Zsolt Boldogköi
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-018-29186-z
Inter-individual differences in contamination profiles as tracer of social group association in stranded sperm whales
Cited by: 5
Author(s): Joseph Schnitzler, Marianna Pinzone, Marijke Autenrieth, Abbo van Neer, Lonneke L. IJsseldijk, Jonathan L. Barber, Rob Deaville, Paul D. Jepson, Andrew Brownlow, Tobias Schaffeld, Jean-Pierre Thomé, Ralph Tiedemann, Krishna Das, Ursula Siebert
Software Mentions: 3
Published: over 6 years ago
10.1038/s41598-018-32198-4
Experimental Adaptation of the Yellow Fever Virus to the Mosquito Aedes albopictus and Potential risk of urban epidemics in Brazil, South America
Cited by: 26
Author(s): Fadila Amraoui, Adrien Pain, Géraldine Piorkowski, Marie Vazeille, Dinair Couto-Lima, Xavier de Lamballerie, Ricardo Lourenço‐de‐Oliveira, Anna‐Bella Failloux
Software Mentions: 3
Published: about 6 years ago
10.1038/s41598-019-40974-z
G-protein Gα13 functions as a cytoskeletal and mitochondrial regulator to restrain osteoclast function
Cited by: 11
Author(s): Shinichi Nakano, Kenzo Inoue, Cheng Xu, Zhonghao Deng, Viktoriya Syrovatkina, G. Vitone, Liang Zhao, Xin‐Yun Huang, Baohong Zhao
Software Mentions: 3
Published: over 5 years ago
10.1038/s41598-019-41625-z
Improved survival prognostication of node-positive malignant melanoma patients utilizing shotgun proteomics guided by histopathological characterization and genomic data
Cited by: 12
Author(s): Lázaro Betancourt, Krzysztof Pawłowski, Jonatan Eriksson, Attila Marcell Szász, Shamik Mitra, Indira Pla, Charlotte Welinder, Henrik Ekedahl, Per Broberg, Roger Appelqvist, Maria Yakovleva, Y. Sugita, Kenichi Miharada, Christian Ingvar, Lotta Lundgren, Bo Baldetorp, Håkan Olsson, Melinda Rezeli, Elisabet Wieslander, Péter Horvatovich, Johan Malm, Göran Jönsson, György Markó-Varga
Software Mentions: 3
Published: over 5 years ago
10.3390/ijms22147298
Reprogramming mRNA Expression in Response to Defect in RNA Polymerase III Assembly in the Yeast Saccharomyces cerevisiae
Cited by: 1
Author(s): Izabela Rudzińska, Małgorzata Cieśla, Tomasz W. Turowski, Alicja Armatowska, Ewa Leśniewska, Magdalena Boguta
Software Mentions: 3
Published: over 3 years ago
10.3390/ijms20235912
Quantitative Trait Module-Based Genetic Analysis of Alzheimer’s Disease
Cited by: 4
Author(s): Shaoxun Yuan, Haitao Li, Jingjing Xie, Xiao Sun
Software Mentions: 3
Published: about 5 years ago
10.3389/fgene.2021.665173
Identification and Validation of a Novel RNA-Binding Protein-Related Gene-Based Prognostic Model for Multiple Myeloma
Cited by: 6
Author(s): Wei Wang, Shiwen Xu, Xia-Yin Zhu, Qixin Guo, Min Zhu, Xin-Li Mao, Yahong Chen, Shaowei Li, Wenda Luo
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-019-47866-2
Early life exposures shape the CD4+ T cell transcriptome, influencing proliferation, differentiation, and mitochondrial dynamics later in life
Cited by: 6
Author(s): Catherine G. Burke, Jason R. Myers, Lisbeth A. Boulé, Christina M. Post, Paul S. Brookes, B. Paige Lawrence
Software Mentions: 3
Published: over 5 years ago
10.3389/fgene.2019.00786
Specific Glioma Prognostic Subtype Distinctions Based on DNA Methylation Patterns
Cited by: 15
Author(s): Xueran Chen, Chenggang Zhao, Zhiyang Zhao, Hongzhi Wang, Zhiyou Fang
Software Mentions: 3
Published: about 5 years ago
10.3389/fncel.2018.00352
IFN-γ Producing Th1 Cells Induce Different Transcriptional Profiles in Microglia and Astrocytes
Cited by: 22
Author(s): Chittappen Kandiyil Prajeeth, Oliver Dittrich‐Breiholz, Steven R. Talbot, Philippe A. Robert, Jochen Huehn, Martin Stangel
Software Mentions: 3
Published: about 6 years ago
10.3390/ijms22052442
Immunogenomic Identification for Predicting the Prognosis of Cervical Cancer Patients
Cited by: 10
Author(s): Qun Wang, Aurelia Vattai, Theresa� Vilsmaier, Till Kaltofen, Alexander Steger, Doris Mayr, Sven Mahner, Udo Jeschke, H Heidegger
Software Mentions: 3
Published: over 3 years ago
10.3390/ijms22052282
The RNAi Mechanism Regulates a New Exonuclease Gene Involved in the Virulence of Mucorales
Cited by: 8
Author(s): Carlos Pèrez-Arques, María Isabel Navarro-Mendoza, Laura Murcia, Eusebio Navarro, Victoriano Garre
Software Mentions: 3
Published: almost 4 years ago
10.1038/s41598-020-57806-0
Novel Analytical Platform For Robust Identification of Cell Migration Inhibitors
Cited by: 6
Author(s): Parinyachat Somchai, Kriengkrai Phongkitkarun, Patipark Kueanjinda, Supawan Jamnongsong, Kulthida Vaeteewoottacharn, Vor Luvira, Seiji Okada, Siwanon Jirawatnotai, Somponnat Sampattavanich
Software Mentions: 3
Published: almost 5 years ago
10.1038/s41598-020-59469-3
Targeting Oncogenic Super Enhancers in MYC-Dependent AML Using a Small Molecule Activator of NR4A Nuclear Receptors
Cited by: 18
Author(s): S. Greg Call, Ryan P. Duren, Anil K. Panigrahi, Huu Lam Nguyen, Pablo R. Freire, Sandra L. Grimm, Cristian Coarfa, Orla M. Conneely
Software Mentions: 3
Published: almost 5 years ago
10.1038/s41598-020-61688-7
Prognostic implications of EGFR protein expression in sporadic colorectal tumors: Correlation with copy number status, mRNA levels and miRNA regulation
Cited by: 15
Author(s): Sofía Del Carmen, Luis A. Corchete, Ruth Gervás, A Barrio Rodriguez, María José García, José A. Sánchez Alcázar, José María Sánchez García, Óscar Bengoechea, Luís Muñoz-Bellvis, José María Sayagués, Mónica Viñarás Abad
Software Mentions: 3
Published: over 4 years ago
10.1038/s41598-020-63148-8
Comprehensive immunogenomic landscape analysis of prognosis-related genes in head and neck cancer
Cited by: 22
Author(s): Lei Li, Xiaoli Wang, Qian Lei, Chuanzheng Sun, Yan Xi, Ran Chen, Yongming He
Software Mentions: 3
Published: over 4 years ago
10.1038/s41598-020-63607-2
Regulatory relationship between quality variation and environment of Cistanche deserticola in three ecotypes based on soil microbiome analysis
Cited by: 17
Author(s): Xiao Sun, Li Zhang, Jin Pei, Linfang Huang
Software Mentions: 3
Published: over 4 years ago
10.1038/s41598-020-66939-1
Soluble silica stimulates osteogenic differentiation and gap junction communication in human dental follicle cells
Cited by: 17
Author(s): Pamela Uribe, Anders Johansson, Ravin Jugdaohsingh, Jonathan J. Powell, Catarina Magnusson, Marcela Dávila, Anna Westerlund, Maria Ransjö
Software Mentions: 3
Published: over 4 years ago
10.1038/s41598-020-66986-8
ssGSEA score-based Ras dependency indexes derived from gene expression data reveal potential Ras addiction mechanisms with possible clinical implications
Cited by: 100
Author(s): Ming Yi, Dwight V. Nissley, Frank McCormick, Robert M. Stephens
Software Mentions: 3
Published: over 4 years ago
10.3390/ijms22020514
Transcriptome Analysis and Identification of Lipid Genes in Physaria lindheimeri, a Genetic Resource for Hydroxy Fatty Acids in Seed Oil
Cited by: 3
Author(s): Grace Q. Chen, Won Nyeong Kim, Kumiko Johnson, Mid-Eum Park, Kyeong‐Ryeol Lee, Hyun Uk Kim
Software Mentions: 3
Published: almost 4 years ago