Ecosyste.ms: Papers

10.1371/journal.pgen.1009392

Genome-wide association study of resistance to Mycobacterium tuberculosis infection identifies a locus at 10q26.2 in three distinct populations
Cited by: 14
Author(s): Jocelyn Quistrebert, Marianna Orlova, Gaspard Kerner, Le Thi Ton, Nguyễn Trong Luong, Nguyễn Thanh Danh, Quentin B. Vincent, Fabienne Jabot‐Hanin, Yoann Seeleuthner, Jacinta Bustamante, Stéphanie Boisson‐Dupuis, Nguyễn Thu Hương, Nguyen Ngoc Ba, Jean‐Laurent Casanova, Christophe Delacourt, Eileen G. Hoal, Alexandre Alcaïs, Vu Hong Thai, Lai The Thành, Laurent Abel, Erwin Schurr, Aurélie Cobat
Software Mentions: 4
Published: over 3 years ago

10.3390/cancers13112568

Radiomic Based Machine Learning Performance for a Three Class Problem in Neuro-Oncology: Time to Test the Waters?
Cited by: 10
Author(s): Sarv Priya, Yanan Liu, Caitlin Ward, Nam Le, Neetu Soni, Ravishankar Pillenahalli Maheshwarappa, Varun Monga, Honghai Zhang, Milan Sonka, Girish Bathla
Software Mentions: 4
Published: over 3 years ago

10.3389/fgene.2019.00232

Central and Peripheral Changes in FOS Expression in Schizophrenia Based on Genome-Wide Gene Expression
Cited by: 10
Author(s): Jing Huang, Fangkun Liu, Bolun Wang, Hui Tang, Ziwei Teng, Lehua Li, Yan Qiu, Haishan Wu, Jindong Chen
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-98008-6

Modelling COVID-19 severity in the Republic of Ireland using patient co-morbidities, socioeconomic profile and geographic location, February to November 2020
Cited by: 6
Author(s): Martin Boudou, Coilín ÓhAiseadha, Patricia Garvey, Jean O’Dwyer, Paul Hynds
Software Mentions: 4
Published: about 3 years ago

10.7150/thno.46142

A panel of eight microRNAs is a good predictive parameter for triple-negative breast cancer relapse
Cited by: 42
Author(s): Hsiao-Chin Hong, Ching-Te Chuang, Wei‐Chih Huang, Shun-Long Weng, Chia-Hung Chen, Kuang-Hsin Chang, Kuang‐Wen Liao, Hsien-Da Huang
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0137171

Discovery of a Novel Immune Gene Signature with Profound Prognostic Value in Colorectal Cancer: A Model of Cooperativity Disorientation Created in the Process from Development to Cancer
Cited by: 22
Author(s): Ning An, Xiaoyu Shi, Yueming Zhang, Ning Lv, Feng Li, Di Xia, Ning Han, Guiqi Wang, Shujun Cheng, Kaitai Zhang
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pone.0247556

MicroRNA biomarkers of type 2 diabetes: A protocol for corroborating evidence by computational genomics and meta-analyses
Cited by: 4
Author(s): Hongmei Zhu, Siu-wai Leung
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pmed.1003111

Preoperative risk stratification in endometrial cancer (ENDORISK) by a Bayesian network model: A development and validation study
Cited by: 22
Author(s): Casper Reijnen, Evangelia Gogou, Nicole C.M. Visser, Hilde Engerud, Jordache Ramjith, Louis J.M. van der Putten, Koen K. Van de Vijver, Marı́a Santacana, Peter Bronsert, Johan Bulten, Marc Hirschfeld, Eva Colás, Antonio Gil‐Moreno, Armando Reques, Gemma Mancebo, Camilla Krakstad, Jone Trovik, Ingfrid Salvesen Haldorsen, Jutta Huvila, Martin Koskas, Vít Weinberger, Markéta Bednaříková, Jitka Hausnerová, A.A.M. van der Wurff, Xavier Matías‐Guiu, Frédéric Amant, Leon F.A.G. Massuger, Marc P.L.M. Snijders, Heidi V.N. Küsters‐Vandevelde, Peter Lucas, Johanna M.A. Pijnenborg
Software Mentions: 4
Published: over 4 years ago

10.7150/thno.47066

Urinary glycoproteins associated with aggressive prostate cancer
Cited by: 19
Author(s): Mingming Dong, Tung-Shing Mamie Lih, Shao Yung Chen, Kyung Cho Cho, Rodrigo Vargas Eguez, Naseruddin Höti, Yangying Zhou, Weiming Yang, Leslie A. Mangold, Daniel W. Chan, Zhen Zhang, Lori J. Sokoll, Alan W. Partin, Hui Zhang
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pmed.1002683

Variable generalization performance of a deep learning model to detect pneumonia in chest radiographs: A cross-sectional study
Cited by: 809
Author(s): John R. Zech, Marcus A. Badgeley, Manway Liu, Anthony Costa, J. Titano, Eric K. Oermann
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0109291

Systematic Analysis of Blood Cell Transcriptome in End-Stage Chronic Respiratory Diseases
Cited by: 28
Author(s): Julie Chesné, Richard Danger, K. Botturi, Martine Reynaud‐Gaubert, Sacha Mussot, M. Stern, Isabelle Danner-Boucher, Jean‐François Mornex, Christophe Pison, C. Dromer, Romain Kessler, Marcel Dahan, Olivier Brugière, Jérôme Le Pavec, Frédèric Perros, Marc Humbert, Carine Gomez, Sophie Brouard, A. Magnan
Software Mentions: 4
Published: about 10 years ago

10.18632/aging.103253

Systematic metabolic analysis of potential target, therapeutic drug, diagnostic method and animal model applicability in three neurodegenerative diseases
Cited by: 10
Author(s): Wen‐Xing Li, Gong‐Hua Li, Xin Tong, Pengpeng Yang, Jing‐Fei Huang, Lin Xu, Shao‐Xing Dai
Software Mentions: 4
Published: over 4 years ago

10.1186/s12859-021-04235-z

Putative markers for the detection of early-stage bladder cancer selected by urine metabolomics
Cited by: 11
Author(s): Jia You Lin, Bao Rong Juo, Yu Hsuan Yeh, Shu Hsuan Fu, Yi Ting Chen, Chien Lun Chen, Kun Wu
Software Mentions: 4
Published: over 3 years ago

10.1186/s12859-015-0846-z

Predicting transcription factor site occupancy using DNA sequence intrinsic and cell-type specific chromatin features
Cited by: 28
Author(s): Sunil Kumar, Philipp Bücher
Software Mentions: 4
Published: almost 9 years ago

10.1155/2016/3159617

The Difference between the Two Representative Kampo Formulas for Treating Dysmenorrhea: An Observational Study
Cited by: 15
Author(s): Tetsuhiro Yoshino, Kotoe Katayama, Yuko Horiba, Kaori Munakata, Rui Yamaguchi, Seiya Imoto, Satoru Miyano, Hideki Mima, Kenji Watanabe, Masaru Mimura
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pone.0200785

Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture
Cited by: 125
Author(s): Stuart K. Kim
Software Mentions: 4
Published: over 6 years ago

10.1183/13993003.03201-2020

Plasma metabolomics exhibit response to therapy in chronic thromboembolic pulmonary hypertension
Cited by: 23
Author(s): Emilia M. Swietlik, Pavandeep Ghataorhe, Kasia Zalewska, John Wharton, Luke Howard, Dolores Taboada, John Cannon, Nicholas W. Morrell, Martin R. Wilkins, Mark Toshner, Joanna Pepke‐Zaba, Christopher J. Rhodes
Software Mentions: 4
Published: about 4 years ago

10.1186/s12967-021-03054-3

Interferon regulatory factor family influences tumor immunity and prognosis of patients with colorectal cancer
Cited by: 15
Author(s): Yanjie Chen, Sushan Luo, Ling Dong, Taotao Liu, Xizhong Shen, Ning‐Ping Zhang, Li Liang
Software Mentions: 4
Published: about 3 years ago

10.1186/s12967-020-02698-x

Identification of key biomarkers and immune infiltration in systemic lupus erythematosus by integrated bioinformatics analysis
Cited by: 78
Author(s): Xingwang Zhao, Longlong Zhang, Juan Wang, Min Zhang, Zhiqiang Song, Bing Ni, Yi You
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0231127

Evaluation of fish biodiversity in estuaries using environmental DNA metabarcoding
Cited by: 21
Author(s): Hyojin Ahn, Manabu Kume, Yuki Terashima, Ye Feng, Shuichi Kameyama, Masaki Miya, Yoh Yamashita, Atsushi Kasai
Software Mentions: 4
Published: about 4 years ago

10.1186/s12967-018-1744-8

Identification of a multidimensional transcriptome signature for survival prediction of postoperative glioblastoma multiforme patients
Cited by: 43
Author(s): Weizhen Gao, Liemei Guo, Tianqi Xu, Yu-Hua Yin, Jia Feng
Software Mentions: 4
Published: almost 6 years ago

10.3389/fonc.2021.744951

The Landscape of Immune Cells Indicates Prognosis and Applicability of Checkpoint Therapy in Hepatocellular Carcinoma
Cited by: 7
Author(s): Jiacheng Huang, Lele Zhang, Jianxiang Chen, Dalong Wan, Lin Zhou, Shusen Zheng, Yiting Qiao
Software Mentions: 4
Published: about 3 years ago

10.1186/1475-2840-13-84

Impact of serum omentin-1 levels on cardiac prognosis in patients with heart failure
Cited by: 62
Author(s): Takatsune Narumi, Tetsu Watanabe, Shinpei Kadowaki, Daisuke Kinoshita, Masahiro Yokoyama, Yuki Honda, Yoichiro Otaki, Satoshi Nishiyama, Hiroki Takahashi, Takanori Arimoto, Tetsuro Shishido, Takuya Miyamoto, Isao Kubota
Software Mentions: 4
Published: over 10 years ago

10.1002/cam4.1666

The TERT promoter mutation status and MGMT promoter methylation status, combined with dichotomized MRI-derived and clinical features, predict adult primary glioblastoma survival
Cited by: 20
Author(s): Chang Shu, Qiong Wang, Xiaoqian Yan, Jinhuan Wang
Software Mentions: 4
Published: over 6 years ago

10.3389/fonc.2021.725922

Radiomic Evaluations of the Diagnostic Performance of DM, DBT, DCE MRI, DWI, and Their Combination for the Diagnosisof Breast Cancer
Cited by: 4
Author(s): Shuxian Niu, Xiaoyu Wang, Nannan Zhao, Guanyu Liu, Yangyang Kan, Yue Dong, Enuo Cui, Yahong Luo, Tao Yu, Xiran Jiang
Software Mentions: 4
Published: about 3 years ago

10.1007/s00262-020-02778-3

IL-10, IL-13, Eotaxin and IL-10/IL-6 ratio distinguish breast implant-associated anaplastic large-cell lymphoma from all types of benign late seromas
Cited by: 12
Author(s): Arianna Di Napoli, Daniele Greco, Giorgia Scafetta, Francesca Ascenzi, Alessandro Gulino, Luigi Aurisicchio, Fabio Santanelli di Pompeo, Adriana Bonifacino, Enrico Giarnieri, John Morgan, Rita Mancini, Marshall E. Kadin
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0235571

Correlation of retinal sensitivity in microperimetry with vascular density in optical coherence tomography angiography in primary open-angle glaucoma
Cited by: 4
Author(s): Katarzyna Zabel, Przemysław Zabel, Martyna Kaluzna, Aleksander Lamkowski, Damian Jaworski, Magdalena Wietlicka-Piszcz, Jakub J. Kałużny
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0245103

Disease progression of 213 patients hospitalized with Covid-19 in the Czech Republic in March–October 2020: An exploratory analysis
Cited by: 1
Author(s): Martin Modrák, Paul - Christian Bürkner, Tomáš Sieger, Tomás Slisz, Martina Vašáková, Grigorij Mesežnikov, Luis Fernando Casas-Mendez, Jaromír Vajter, J Táborský, Viktor Kubricht, Daniel Suk, Jan Horejsek, M. Jedlička, Adriana Mifková, Adam Jaroš, Miroslav Kubiska, Jana Váchalová, Robin Šín, Markéta Veverková, Zbysek Pospísil, Julie Vohryzková, Rebeka Pokrievková, Kristián Hrusák, Kristína Christozova, Vianey Leos‐Barajas, Karel Fišer, Tomáš Hyánek
Software Mentions: 4
Published: about 3 years ago

10.1186/s40644-021-00395-6

Radiomic nomogram based on MRI to predict grade of branching type intraductal papillary mucinous neoplasms of the pancreas: a multicenter study
Cited by: 14
Author(s): Shuai Cui, Tianyu Tang, Qiuming Su, Yajie Wang, Zhenyu Shu, Wei Yang, Xiangyang Gong
Software Mentions: 4
Published: over 3 years ago

10.1186/s40644-019-0256-y

Radiogenomic analysis of vascular endothelial growth factor in patients with diffuse gliomas
Cited by: 19
Author(s): Zimin Sun, Yiming Li, Yinyan Wang, Xing Fan, Kaibin Xu, Kai Wang, Shaowu Li, Zhong Zhang, Tao Jiang, Xing Liu
Software Mentions: 4
Published: about 5 years ago

10.1016/j.jalz.2019.03.007

Inflammatory biomarkers in Alzheimer's disease plasma
Cited by: 118
Author(s): Angharad R. Morgan, Samuel Touchard, Claire Leckey, Caroline O’Hagan, Alejo J. Nevado‐Holgado, Frederik Barkhof, Lars Bertram, Olivier Blin, Isabelle Bos, Valerija Dobričić, Sebastiaan Engelborghs, Giovanni B. Frisoni, Lutz Frölich, Silvey Gabel, Peter Johannsen, Petronella Kettunen, Iwona Kłoszewska, Cristina Legido‐Quigley, Alberto Lleó, Pablo Martínez-Lage, Patrizia Mecocci, Karen Meersmans, José Luís Molinuevo, Gwendoline Peyratout, Julius Popp, Jill C. Richardson, Isabel Sala, Philip Scheltens, Johannes Streffer, Hikka Soininen, Mikel Tainta, Charlotte E. Teunissen, Magda Tsolaki, Rik Vandenberghe, Pieter Jelle Visser, Stephanie J.B. Vos, Lars‐Olof Wahlund, Anders Wallin, Sarah Westwood, Henrik Zetterberg, Simon Lovestone, B. Paul Morgan, Alzheimer’s Disease
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.616263

Immunohistochemical Signature Add Prognostic Value in Patients With Early and Intermediate Hepatocellular Carcinoma Underwent Curative Liver Resection
Cited by: 2
Author(s): Yan Bai, Yuane Lian, Xiaoping Chen, Jiayi Wu, Jianlin Lai, Funan Qiu, Songqiang Zhou, Zijing Zhu, Yuan Tian, Yaodong Wang, Yinghong Yang, Mao-Lin Yan
Software Mentions: 4
Published: almost 4 years ago

10.3390/nu12123599

Se Status Prediction by Food Intake as Compared to Circulating Biomarkers in a West Algerian Population
Cited by: 9
Author(s): Moussa Belhadj, Latifa Sarra Kazi Tani, Nouria Dennouni-Medjati, Yahia Harek, Majda Dali Sahi, Qian Sun, Raban Arved Heller, Ammaria Behar, Laurent Charlet, Lutz Schomburg
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12935-020-01352-2

Co-expression network analysis identifies a gene signature as a predictive biomarker for energy metabolism in osteosarcoma
Cited by: 19
Author(s): Naiqiang Zhu, Jingyi Hou, Guiyun Ma, Shuai Guo, Chengliang Zhao, Bin Chen
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0247827

Identification of UBE2C as hub gene in driving prostate cancer by integrated bioinformatics analysis
Cited by: 12
Author(s): Yan Wu, Jili Wang, Qi Tang, Guoping Ren
Software Mentions: 4
Published: over 3 years ago

10.1186/s12935-018-0681-1

Identification of RPL5 and RPL10 as novel diagnostic biomarkers of Atypical teratoid/rhabdoid tumors
Cited by: 6
Author(s): Yanming Ren, Chuanmin Tao, Xiliang Wang, Yan Ju
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0164688

Recalibration of the ACC/AHA Risk Score in Two Population-Based German Cohorts
Cited by: 22
Author(s): Tonia de las Heras Gala, Marie Henrike Geisel, Annette Peters, Barbara Thorand, Jens Baumert, Nils Lehmann, Karl‐Heinz Jöckel, Susanne Moebus, Raimund Erbel, Christine Meisinger, Amir A. Mahabadi, Wolfgang Köenig
Software Mentions: 4
Published: about 8 years ago

10.3389/fonc.2021.704218

RGB Three-Channel SWE-Based Ultrasomics Model: Improving the Efficiency in Differentiating Focal Liver Lesions
Cited by: 2
Author(s): Minquan Cheng, Meng-Fei Xian, Wei Tian, Ming‐De Li, Hang-Tong Hu, Wei Li, Jianchao Zhang, Yang Huang, Xiaoyan Xie, Ming-De Lü, Ming Kuang, Wei Wang, Si-Min Ruan, Li-Da Chen
Software Mentions: 4
Published: about 3 years ago

10.3389/fonc.2020.628608

Upregulation of Long Non-Coding RNA GCC2-AS1 Facilitates Malignant Phenotypes and Correlated With Unfavorable Prognosis for Lung Adenocarcinoma
Cited by: 6
Author(s): Fengqiang Yu, Mingqiang Liang, Weidong Wu, Yu Huang, Juanjuan Zheng, Bin Zheng, Chun Chen
Software Mentions: 4
Published: almost 4 years ago

10.3389/fonc.2020.00604

Radiomics-Based Preoperative Prediction of Lymph Node Status Following Neoadjuvant Therapy in Locally Advanced Rectal Cancer
Cited by: 31
Author(s): Xuezhi Zhou, Yan Yi, Zhenyu Liu, Zhiyang Zhou, Bingjia Lai, Kai Sun, Longfei Li, Luqi Huang, Yanqiu Feng, Wuteng Cao, Jie Tian
Software Mentions: 4
Published: over 4 years ago

10.3389/fonc.2021.618677

Development and Validation a Nomogram Incorporating CT Radiomics Signatures and Radiological Features for Differentiating Invasive Adenocarcinoma From Adenocarcinoma In Situ and Minimally Invasive Adenocarcinoma Presenting as Ground-Glass Nodules Measuring 5-10mm in Diameter
Cited by: 11
Author(s): Lili Shi, Wei Shi, Xueqing Peng, Yi Zhan, Linxiao Zhou, Yunpeng Wang, Mingxiang Feng, Jing Zhao, Fei Shan, Lei Liu
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0230254

Forecasting severe grape downy mildew attacks using machine learning
Cited by: 26
Author(s): Mathilde Chen, François Brun, M. Raynal, David Makowski
Software Mentions: 4
Published: over 4 years ago

10.3390/cancers12082003

Methylation Patterns and Chromatin Accessibility in Neuroendocrine Lung Cancer
Cited by: 5
Author(s): Elsa Arbajian, Mattias Aine, Anna Karlsson, Johan Vallon‐Christersson, Hans Brunnström, Josef Davidsson, Sofie Mohlin, Maria Planck, Johan Staaf
Software Mentions: 4
Published: over 4 years ago

10.3389/fnins.2021.657465

Novel Insight Into the Role of Immune Dysregulation in Amyotrophic Lateral Sclerosis Based on Bioinformatic Analysis
Cited by: 7
Author(s): Yuanyang Xie, Ximei Luo, Hongping He, Min Tang
Software Mentions: 4
Published: over 3 years ago

10.3389/fonc.2021.704994

Enhanced CT-Based Radiomics to Predict Micropapillary Pattern Within Lung Invasive Adenocarcinoma
Cited by: 4
Author(s): Yunyu Xu, Wenbin Ji, Liqiao Hou, Shuangxiang Lin, Yangyang Shi, Chao Zhou, Yinnan Meng, Wei Wang, Xiaofeng Chen, Meihao Wang, Haihua Yang
Software Mentions: 4
Published: about 3 years ago

10.3389/fonc.2021.620200

Methylation Regulation of TLR3 on Immune Parameters in Lung Adenocarcinoma
Cited by: 3
Author(s): Ang Li, Hongjiao Wu, Quan Tian, Yi Zhang, Zhi Zhang, Xuemei Zhang
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0017493

Combining Clinical, Pathological, and Demographic Factors Refines Prognosis of Lung Cancer: A Population-Based Study
Cited by: 22
Author(s): Joseph Putila, Scot C. Remick, Nancy Lan Guo
Software Mentions: 4
Published: over 13 years ago

10.1111/bpa.12595

Epigenomic signature of adrenoleukodystrophy predicts compromised oligodendrocyte differentiation
Cited by: 18
Author(s): Agatha Schlüter, Juan Sandoval, Stéphane Fourcade, Ángel Díaz‐Lagares, Montserrat Ruíz, Patrizia Casaccia, Manel Esteller, Aurora Pujol
Software Mentions: 4
Published: over 6 years ago

10.1002/advs.202000486

Machine Learning‐Assisted Evaluation of Circulating DNA Quantitative Analysis for Cancer Screening
Cited by: 17
Author(s): Rita Tanos, Guillaume Tosato, Amaëlle Otandault, Zahra Al Amir Dache, Laurence Lasorsa, Geoffroy Tousch, Safia El Messaoudi, Romain Meddeb, Mona Diab Assaf, Marc Ychou, Stanislas du Manoir, Denis Pezet, Johan Gagnière, Pierre Colombo, William Jacot, Eric Assénat, Marie Dupuy, Antoine Adenis, Thibault Mazard, Caroline Mollévi, José María Sayagués, Jacques Colinge, Alain R. Thierry
Software Mentions: 4
Published: over 4 years ago

10.1007/s11306-020-01750-7

SUMMER, a shiny utility for metabolomics and multiomics exploratory research
Cited by: 3
Author(s): Ling Huang, António Currais, Maxim N. Shokhirev
Software Mentions: 4
Published: almost 4 years ago

10.1007/s11306-020-1646-7

Identification to species level of live single microalgal cells from plankton samples with matrix-free laser/desorption ionization mass spectrometry
Cited by: 13
Author(s): Tim U. H. Baumeister, Marine Vallet, Filip Kaftan, Laure Guillou, Aleš Svatoš, Georg Pohnert
Software Mentions: 4
Published: over 4 years ago

10.1007/s00439-017-1808-5

Global skin colour prediction from DNA
Cited by: 96
Author(s): Susan Walsh, Lakshmi Chaitanya, Krystal Breslin, Charanya Muralidharan, Agnieszka Bronikowska, Ewelina Pośpiech, Júlia Koller, Leda Kovatsi, Andreas Wollstein, Wojciech Branicki, Fan Liu, Manfred Kayser
Software Mentions: 4
Published: over 7 years ago

10.18632/aging.102835

The lncRNA ENSG00000254041.1 promotes cell invasiveness and associates with poor prognosis of pancreatic ductal adenocarcinoma
Cited by: 6
Author(s): Bin Chen, Qiqi Zhang, Xujing Wang, Yongkun Wang, Jiaqu Cui, Huiren Zhuang, Jianying Tang
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0041370

Identification of Catalytic Residues Using a Novel Feature that Integrates the Microenvironment and Geometrical Location Properties of Residues
Cited by: 12
Author(s): Lei Han, Yongjun Zhang, Jiangning Song, Ming S. Liu, Ziding Zhang
Software Mentions: 4
Published: over 12 years ago

10.3389/fneur.2019.00512

Serial S100B Sampling Detects Intracranial Lesion Development in Patients on Extracorporeal Membrane Oxygenation
Cited by: 7
Author(s): Alexander Fletcher‐Sandersjöö, Caroline Lindblad, Eric Peter Thelin, Jiri Bartek, Marko Sallisalmi, Adrian Elmi-Terander, Mikael Svensson, Bo‐Michael Bellander, Lars Broman
Software Mentions: 4
Published: over 5 years ago

10.1155/2021/9933136

Identification of Biomarkers for Predicting Allograft Rejection following Kidney Transplantation Based on the Weighted Gene Coexpression Network Analysis
Cited by: 2
Author(s): Lijun Wang, Xiao-Bo Ma, Hongying Xia, Xun Sun, Yu Lu, Qian Yang, Zongqiang Hu, Yi‐Fang Zhao, Wei Hu, Jianghua Ran
Software Mentions: 4
Published: over 3 years ago

10.3389/fonc.2021.687884

CT-Based Radiomics Signature With Machine Learning Predicts MYCN Amplification in Pediatric Abdominal Neuroblastoma
Cited by: 16
Author(s): Xin Chen, Haoru Wang, Kai-Ping Huang, Huan Liu, Hui-Sheng Ding, Li Zhang, Ting Zhang, Wenqing Yu, Ling He
Software Mentions: 4
Published: over 3 years ago

10.1186/s40168-018-0515-3

Breast cancer in postmenopausal women is associated with an altered gut metagenome
Cited by: 157
Author(s): Jia Zhu, Ming Liao, Ziting Yao, Wenying Liang, Qibin Li, Jianlun Liu, Huawei Yang, Yinan Ji, Wei Wei, Aihua Tan, Sai Liang, Yang Chen, Haisong Lin, Xinyuan Zhu, Shengzhu Huang, Jiarong Tian, Rongjiang Tang, Qiuyan Wang, Zengnan Mo
Software Mentions: 4
Published: over 6 years ago

10.1016/j.ahj.2016.10.020

Inadequacy of existing clinical prediction models for predicting mortality after transcatheter aortic valve implantation
Cited by: 41
Author(s): Glen P. Martin, Matthew Sperrin, Peter Ludman, Mark de Belder, Chris P Gale, William D. Toff, Neil Moat, Uday Trivedi, Iain Buchan, Mamas A. Mamas
Software Mentions: 4
Published: almost 8 years ago

10.3389/fneur.2020.00316

Observational Study of Pulse Transit Time in Children With Sleep Disordered Breathing
Cited by: 1
Author(s): Michael Yanney, Andrew Prayle, Nicola J. Rowbotham, Miguel Kurc, Sean Tilbrook, Nabeel Ali
Software Mentions: 4
Published: over 4 years ago

10.3389/fmolb.2021.696072

Decreased Expression of PACSIN1 in Brain Glioma Samples Predicts Poor Prognosis
Cited by: 6
Author(s): Zimu Zhou, Zhiyuan Jia, Xi-an Fu, Rui Ma, Ren Yuting, Yuan Wang, Tao Wen, Ming Ma, Yinlong Liu, Enfang Shan
Software Mentions: 4
Published: over 3 years ago

10.3390/microorganisms9020294

Potential Association between Vaginal Microbiota and Cervical Carcinogenesis in Korean Women: A Cohort Study
Cited by: 23
Author(s): Gi-Ung Kang, Da-Ryung Jung, Yoon Hee Lee, Se Young Jeon, Hyung Soo Han, Gun Oh Chong, Jae‐Ho Shin
Software Mentions: 4
Published: almost 4 years ago

10.18632/aging.202901

High expression of COMMD7 is an adverse prognostic factor in acute myeloid leukemia
Cited by: 12
Author(s): Kongfei Li, Lieguang Chen, Hua Zhang, Lu Wang, Keya Sha, Xiaohong Du, Daiyang Li, Zhong-Zheng Zheng, Renzhi Pei, Ying Lu, Hongyan Tong
Software Mentions: 4
Published: over 3 years ago

10.3390/jpm11080772

Genetic Variants in PGE2 Receptors Modulate the Risk of Nephrosclerosis and Clinical Outcomes in These Patients
Cited by: 4
Author(s): Luz María González, Nicolás Roberto Robles, Sonia Mota-Zamorano, José M. Valdivielso, Juan M. López‐Gómez, Guillermo Gervasini
Software Mentions: 4
Published: over 3 years ago

10.1093/gigascience/gix058

Connections between the human gut microbiome and gestational diabetes mellitus
Cited by: 178
Author(s): Yashu Kuang, Jinhua Lu, Shenghui Li, Junhua Li, Mingyang Yuan, Jianxing He, Niannian Chen, Wan-Qing Xiao, Shi‐Li Shen, Lan Qiu, Yongming Wu, Cui-Yue Hu, Yanyan Wu, Weidong Li, Qiaozhu Chen, Hong‐Wen Deng, Christopher J. Papasian, Huimin Xia, Xiu Qiu
Software Mentions: 4
Published: over 7 years ago

10.3390/ijms19102894

Inhibitory Effect of Methotrexate on Rheumatoid Arthritis Inflammation and Comprehensive Metabolomics Analysis Using Ultra-Performance Liquid Chromatography-Quadrupole Time of Flight-Mass Spectrometry (UPLC-Q/TOF-MS)
Cited by: 30
Author(s): Zhiqiang Pang, Guoqiang Wang, Nan Ran, Hongqiang Lin, Ziyan Wang, Xuewa Guan, Yuze Yuan, Keyong Fang, Jinping Liu, Fang Wang
Software Mentions: 4
Published: about 6 years ago

10.1186/s12942-015-0001-0

Modelling the potential spatial distribution of mosquito species using three different techniques
Cited by: 33
Author(s): Daniela Cianci, Nienke Hartemink, Adolfo Ibáñez-Justicia
Software Mentions: 4
Published: almost 10 years ago

10.1038/s42003-021-02289-6

Predicting the probability of death using proteomics
Cited by: 7
Author(s): Thjodbjorg Eiriksdottir, Steinthor Ardal, Benedikt Atli Jónsson, Sigrún H. Lund, Erna V. Ívarsdóttir, Kristjan Norland, Egil Ferkingstad, Hreinn Stefánsson, Ingileif Jónsdóttir, Hilma Hólm, Thorunn Rafnar, Jona Saemundsdottir, Gudmundur L. Norddahl, Guðmundur Þorgeirsson, Daníel F. Guðbjartsson, Patrick Sulem, Unnur Þorsteinsdóttir, Kári Stefansson, Magnus O. Ulfarsson
Software Mentions: 4
Published: over 3 years ago

10.1007/s00432-020-03200-2

Survival prediction for patients with non-resectable intrahepatic cholangiocarcinoma undergoing chemotherapy: a retrospective analysis comparing the tumor marker CA 19-9 with cross-sectional imaging
Cited by: 9
Author(s): Felix Hähn, Lukáš Müller, Florian Jungmann, Aline Mähringer‐Kunz, Yasemin Tanyildizi, Christoph Düber, Peter R. Galle, Arndt Weinmann, Roman Kloeckner
Software Mentions: 4
Published: over 4 years ago

10.3390/ijms21155359

Small Extracellular Vesicles Isolated from Serum May Serve as Signal-Enhancers for the Monitoring of CNS Tumors
Cited by: 17
Author(s): Gabriella Dobra, Mátyás Bukva, Z. G. Szabó, Bella Bruszel, Mária Harmati, Edina Gyukity-Sebestyén, Adrienn Jenei, Mónika Szűcs, Péter Horváth, Tamás Bı́ró, Álmos Klekner, Krisztina Buzás
Software Mentions: 4
Published: over 4 years ago

10.3390/jcm8010019

Optimizing Detection of Kidney Transplant Injury by Assessment of Donor-Derived Cell-Free DNA via Massively Multiplex PCR
Cited by: 118
Author(s): Tara K. Sigdel, Felipe Acosta Archila, T Constantin, Sarah A. Prins, Juliane Liberto, Izabella Damm, Parhom Towfighi, Samantha Navarro, Eser Kırkızlar, Allison Ryan, Styrmir Sigurjonsson, Reuben D. Sarwal, Szu-Chuan Hseish, Chitranon Chan-on, Bernhard Zimmermann, Paul R. Billings, Solomon Moshkevich, Minnie M. Sarwal
Software Mentions: 4
Published: almost 6 years ago

10.1186/1749-8090-7-87

Atrial fibrillation following cardiac surgery: risk analysis and long-term survival
Cited by: 119
Author(s): Sólveig Helgadóttir, Martin I. Sigurdsson, Inga Lára Ingvarsdóttir, Davíð O. Arnar, Tómas Guðbjartsson
Software Mentions: 4
Published: about 12 years ago

10.1038/s41437-020-00401-w

Neighbor GWAS: incorporating neighbor genotypic identity into genome-wide association studies of field herbivory
Cited by: 7
Author(s): Yasuhiro Sato, Eiji Yamamoto, Kentaro Shimizu, Atsushi J. Nagano
Software Mentions: 4
Published: almost 4 years ago

10.1002/jcb.29128

NCF2, MYO1F, S1PR4, and FCN1 as potential noninvasive diagnostic biomarkers in patients with obstructive coronary artery: A weighted gene co‐expression network analysis
Cited by: 24
Author(s): Xiangang Mo, Wei Liu, Yunan Yang, Saber Imani, Shan Lu, Guorong Dan, Xuqiang Nie, Jun Yan, Rong Zhan, Xiaohui Li, Youcai Deng, Bingbo Chen, Yuchen Cai
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.3563

Understanding predation risk and individual variation in risk avoidance for threatened boreal caribou
Cited by: 46
Author(s): Matthew A. Mumma, Michael P. Gillingham, Chris J. Johnson, Katherine L. Parker
Software Mentions: 4
Published: about 7 years ago

10.1186/s13054-017-1800-4

Early troponin I in critical illness and its association with hospital mortality: a cohort study
Cited by: 22
Author(s): Annemarie B Docherty, Malcolm Sim, João Diogo Oliveira, Michael Adlam, Marlies Ostermann, Timothy Walsh, John Kinsella, Nazir Lone
Software Mentions: 4
Published: over 7 years ago

10.1016/j.jmb.2014.04.026

SuSPect: Enhanced Prediction of Single Amino Acid Variant (SAV) Phenotype Using Network Features
Cited by: 181
Author(s): Christopher M. Yates, Ioannis Filippis, Lawrence A. Kelley, Michael J.E. Sternberg
Software Mentions: 4
Published: over 10 years ago

10.1186/s13054-017-1729-7

Protein S100 as outcome predictor after out-of-hospital cardiac arrest and targeted temperature management at 33 °C and 36 °C
Cited by: 61
Author(s): Pascal Stammet, Josef Dankiewicz, Niklas Nielsen, François Faÿs, Olivier Collignon, Christian Hassager, Michael Wanscher, Johan Undén, Jørn Wetterslev, Tommaso Pellis, Anders Åneman, Jan Hovdenes, Matt P. Wise, Georges Gilson, David Erlinge, Janneke Horn, Tobias Cronberg, Michael Kuiper, Jesper Kjærgaard, Yvan Gasche, Yvan Devaux, Hans Friberg
Software Mentions: 4
Published: over 7 years ago

10.1007/s00330-019-06167-y

Application of a deep learning algorithm for detection and visualization of hip fractures on plain pelvic radiographs
Cited by: 164
Author(s): Chi‐Tung Cheng, Tsung-Ying Ho, Tao-Yi Lee, Ching-Fang Chang, Ching-Cheng Chou, Chih-Chi Chen, I‐Fang Chung, Chien‐Hung Liao
Software Mentions: 4
Published: over 5 years ago

10.1093/gastro/goaa069

Nomogram to predict primary non-response to infliximab in patients with Crohn’s disease: a multicenter study
Cited by: 3
Author(s): Xiao-Qi Ye, Jing Cai, Qiao Yu, Xiaocang Cao, Yan Chen, M. K. Rao, Baili Chen, Yao He, Zhirong Zeng, Hao Chen, Yimou Lin, Qian Cao, Minhu Chen, Shenghong Zhang
Software Mentions: 4
Published: about 4 years ago

10.1186/s13550-020-00668-4

Value of 18F-FDG PET/CT-based radiomics model to distinguish the growth patterns of early invasive lung adenocarcinoma manifesting as ground-glass opacity nodules
Cited by: 7
Author(s): Xiaonan Shao, Rong Niu, Xiaoliang Shao, Zhenxing Jiang, Yuetao Wang
Software Mentions: 4
Published: over 4 years ago

10.3390/ijerph16183435

A Multi-Center Competing Risks Model and Its Absolute Risk Calculation Approach
Cited by: 1
Author(s): Wang Jin-tao, Zhongshang Yuan, Yi Liu, Fuzhong Xue
Software Mentions: 4
Published: about 5 years ago

10.3390/ijms20122950

TargetAntiAngio: A Sequence-Based Tool for the Prediction and Analysis of Anti-Angiogenic Peptides
Cited by: 36
Author(s): Vishuda Laengsri, Chanin Nantasenamat, Nalini Schaduangrat, Pornlada Nuchnoi, Virapong Prachayasittikul, Watshara Shoombuatong
Software Mentions: 4
Published: over 5 years ago

10.3389/fpsyg.2019.00480

BEEP—Bodily and Emotional Perception of Pain. A Questionnaire to Measure Reaction to Pain in Chronic Pain Disorders
Cited by: 3
Author(s): Antonio Preti, Serena Stocchino, Francesca Pinna, Manuela Deidda, Mario Musu, Federica Sancassiani, Ferdinando Romano, Sérgio Machado, Gabriele Finco, Mauro Giovanni Carta
Software Mentions: 4
Published: over 5 years ago

10.1186/s13059-017-1353-5

Evaluation of in silico algorithms for use with ACMG/AMP clinical variant interpretation guidelines
Cited by: 165
Author(s): Rajarshi Ghosh, Ninad Oak, Sharon E. Plon
Software Mentions: 4
Published: almost 7 years ago

10.3390/diagnostics11030401

Clinical Impact of Vertical Artifacts Changing with Frequency in Lung Ultrasound
Cited by: 15
Author(s): Natalia Buda, Agnieszka Skoczylas, M. Demi, Anna Wojteczek, Jolanta Cylwik, Gino Soldati
Software Mentions: 4
Published: over 3 years ago

10.3233/JAD-200445

Cognitive, Genetic, Brain Volume, and Diffusion Tensor Imaging Markers as Early Indicators of Dementia
Cited by: 4
Author(s): Theresa Müller, Nicola Maria Payton, Grégoria Kalpouzos, Frank Jessen, Giulia Grande, Lars Bäckman, Erika J. Laukka
Software Mentions: 4
Published: about 4 years ago

10.1155/2017/7210463

Comparison of Attenuated Total Reflectance Mid-Infrared, Near Infrared, and ¹H-Nuclear Magnetic Resonance Spectroscopies for the Determination of Coffee’s Geographical Origin
Cited by: 27
Author(s): Jéssica Medina, Diana Caro Rodríguez, Victoria A. Arana, Andrés Bernal, Pierre Esseiva, Julien Wist
Software Mentions: 4
Published: about 7 years ago

10.1186/s13148-020-00973-8

5-Hydroxymethylcytosine profiles of cfDNA are highly predictive of R-CHOP treatment response in diffuse large B cell lymphoma patients
Cited by: 9
Author(s): Hangyu Chen, Weilong Zhang, Lei Zhang, Ping Yang, Fang Li, Zeruo Yang, Jing Wang, Pei Meng, Yun Hong, Changjian Yan, Wei Li, Jia Liu, Nuo Xu, Long Chen, Xiu-Bing Xiao, Yan Qin, Xiaohong He, Hui Liu, Haichuan Zhu, Chuan He, Jian Lin, Hongmei Jing
Software Mentions: 4
Published: almost 4 years ago

10.3390/ijms22010135

Circulating tRNA Fragments as a Novel Biomarker Class to Distinguish Acute Stroke Subtypes
Cited by: 13
Author(s): Thủy Nguyễn, M. Leontien van der Bent, Marieke J.H. Wermer, Ido R. van den Wijngaard, Erik W. van Zwet, Bas de Groot, Paul H.A. Quax, Nyika D. Kruyt, A. Yaël Nossent
Software Mentions: 4
Published: almost 4 years ago

10.18632/oncotarget.24468

Artificial neural network approach to predict surgical site infection after free-flap reconstruction in patients receiving surgery for head and neck cancer
Cited by: 31
Author(s): Pao‐Jen Kuo, Shao-Chun Wu, Peng‐Chen Chien, Shu-Shya Chang, Cheng-Shyuan Rau, Hsueh-Ling Tai, Shu-Hui Peng, Yi-Chien Lin, Yi‐Chun Chen, Hsiao-Yun Hsieh, Ching‐Hua Hsieh
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12955-021-01736-6

Validation of the Portuguese version of Amsterdam Preoperative Anxiety and Information Scale (APAIS)
Cited by: 6
Author(s): Sandra Maurício, Isabel Rebêlo, Catarina Madeira, Filipa Resende, Susana Esteves
Software Mentions: 4
Published: over 3 years ago

10.1161/JAHA.118.008935

Extracellular Fluid Excess Is Significantly Associated With Coronary Artery Calcification in Patients With Chronic Kidney Disease
Cited by: 22
Author(s): Seohyun Park, Sungha Park, Jong Hyun Jhee, Hae‐Ryong Yun, Hyoungnae Kim, Su Young Jung, Youn Kyung Kee, Chang Yun Yoon, Sun-Hee Park, Hyeon Chang Kim, Seung Hyeok Han, Shin Wook Kang, Sungha Park, Tae Hyun Yoo
Software Mentions: 4
Published: over 6 years ago

10.7150/jca.44436

DNA methylation profiling to predict overall survival risk in gastric cancer: development and validation of a nomogram to optimize clinical management
Cited by: 7
Author(s): Xianxiong Ma, Hengyu Chen, Guobin Wang, Lei Li, Kaixiong Tao
Software Mentions: 4
Published: almost 5 years ago

10.1111/jcmm.16818

The role of YTH domain containing 2 in epigenetic modification and immune infiltration of pan‐cancer
Cited by: 16
Author(s): Chiyuan Zhang, Cuishan Guo, Yan Li, Liang Ouyang, Qi Zhao, Kuiran Liu
Software Mentions: 4
Published: over 3 years ago

10.18632/oncotarget.26022

Metabolite quantification of faecal extracts from colorectal cancer patients and healthy controls
Cited by: 25
Author(s): Gwénaëlle Le Gall, Kiran Guttula, Lee Kellingray, Adrian Tett, Rogier ten Hoopen, E. Kate Kemsley, George M. Savva, Ashraf E.K. Ibrahim, Arjan Narbad
Software Mentions: 4
Published: about 6 years ago

10.1186/s13059-017-1203-5

Multi-tissue DNA methylation age predictor in mouse
Cited by: 307
Author(s): Thomas M. Stubbs, Marc Jan Bonder, Anne-Katrien Stark, Felix Krueger, Ferdinand von Meyenn, Oliver Stegle, Wolf Reik
Software Mentions: 4
Published: over 7 years ago

10.1002/ece3.2730

Designing better frog call recognition models
Cited by: 12
Author(s): Paul Crump, Jeff E. Houlahan
Software Mentions: 4
Published: over 7 years ago

10.1001/jamanetworkopen.2019.6835

Comparison of Machine Learning Methods With National Cardiovascular Data Registry Models for Prediction of Risk of Bleeding After Percutaneous Coronary Intervention
Cited by: 52
Author(s): Bobak J. Mortazavi, Emily M. Bucholz, Nihar R. Desai, Chenxi Huang, Jeptha P. Curtis, Frederick A. Masoudi, Richard E. Shaw, Sahand Negahban, Harlan M. Krumholz
Software Mentions: 3
Published: over 5 years ago

10.3390/ijerph15020277

Identification of Pancreatic Injury in Patients with Elevated Amylase or Lipase Level Using a Decision Tree Classifier: A Cross-Sectional Retrospective Analysis in a Level I Trauma Center
Cited by: 14
Author(s): Cheng-Shyuan Rau, Shao-Chun Wu, Peng‐Chen Chien, Pao‐Jen Kuo, Yi‐Chun Chen, Hsiao-Yun Hsieh, Ching-Hua Hsieh, Hang-Tsung Liu
Software Mentions: 3
Published: almost 7 years ago