cran: pROC | Projects | Ecosyste.ms: Papers

10.3389/fonc.2020.558428

Preoperatively Estimating the Malignant Potential of Mediastinal Lymph Nodes: A Pilot Study Toward Establishing a Robust Radiomics Model Based on Contrast-Enhanced CT Imaging
Cited by: 2
Author(s): Mengshi Dong, Gang Hou, Li Shu, Nan Li, Lina Zhang, Ke Xu
Software Mentions: 3
Published: almost 6 years ago

10.3389/fonc.2021.710909

Development and Validation of a 18F-FDG PET-Based Radiomic Model for Evaluating Hypermetabolic Mediastinal–Hilar Lymph Nodes in Non-Small-Cell Lung Cancer
Cited by: 7
Author(s): Mingli Ouyang, Yiran Wang, Qingshan Deng, Yefei Zhu, Zhenhua Zhao, Ling Wang, Liangxing Wang, Kun Tang
Software Mentions: 3
Published: about 5 years ago

10.3390/jcm9061668

Using Machine Learning to Predict ICU Transfer in Hospitalized COVID-19 Patients
Cited by: 129
Author(s): Fu-Yuan Cheng, Himanshu Joshi, Pranai Tandon, Robert Freeman, David L. Reich, Madhu Mazumdar, Roopa Kohli‐Seth, Matthew A. Levin, Prem Timsina, Arash Kia
Software Mentions: 3
Published: over 6 years ago

10.1017/S0033291719003155

The revised Green <i>et al.</i>, Paranoid Thoughts Scale (R-GPTS): psychometric properties, severity ranges, and clinical cut-offs
Cited by: 105
Author(s): Daniel Freeman, Bao Sheng Loe, David Kingdon, Helen Startup, Andrew Molodynski, Laina Rosebrock, Poppy Brown, Bryony Sheaves, Felicity Waite, Jessica C. Bird
Software Mentions: 3
Published: almost 7 years ago

10.1186/s13014-019-1229-9

Dosimetric predictors of temporal lobe injury after intensity-modulated radiotherapy for T4 nasopharyngeal carcinoma: a competing risk study
Cited by: 24
Author(s): Juan Huang, Fang Kong, Ronald Wihal Oei, Rui Zhai, Chaosu Hu, Hongmei Ying
Software Mentions: 3
Published: over 7 years ago

10.1186/s13014-020-01692-3

A nomogram based on pretreatment CT radiomics features for predicting complete response to chemoradiotherapy in patients with esophageal squamous cell cancer
Cited by: 23
Author(s): Hui Luo, Shao-Fu Huang, Hanbing Xu, Xu‐Yuan Li, Sihan Wu, De‐Hua Wu
Software Mentions: 3
Published: almost 6 years ago

10.1007/s10802-021-00817-w

Using the 11-item Version of the RCADS to Identify Anxiety and Depressive Disorders in Adolescents
Cited by: 10
Author(s): Jerica Radež, Polly Waite, Bruce F. Chorpita, Cathy Creswell, Faith Orchard, Ray Percy, Susan H. Spence, Tessa Reardon
Software Mentions: 3
Published: over 5 years ago

10.1002/jrsm.1287

Machine learning for identifying Randomized Controlled Trials: An evaluation and practitioner's guide
Cited by: 243
Author(s): Iain J. Marshall, Anna Noel-Storr, Joël Kuiper, James Thomas, Byron C. Wallace
Software Mentions: 3
Published: over 8 years ago

10.1186/s13049-020-00728-7

A potential method of identifying stroke and other intracranial lesions in a prehospital setting
Cited by: 4
Author(s): Anssi Saviluoto, Heini Harve‐Rytsälä, Mitja Lääperi, Hetti Kirves, Helena Jäntti, Jouni Nurmi
Software Mentions: 3
Published: over 6 years ago

10.1038/srep13888

Comprehensive urinary metabolomic profiling and identification of potential noninvasive marker for idiopathic Parkinson’s disease
Cited by: 107
Author(s): Hemi Luan, Liang-Feng Liu, Tian Zhi, Manwen Zhang, Ka-Kit Chua, Ju‐Xian Song, Vincent Mok, Min Li, Zongwei Cai
Software Mentions: 3
Published: about 11 years ago

10.1038/srep17737

Lipidomics comparing DCD and DBD liver allografts uncovers lysophospholipids elevated in recipients undergoing early allograft dysfunction
Cited by: 19
Author(s): Jin Xu, Ana María Casas-Ferreira, Yun Ma, Arundhuti Sen, Min Kim, Petroula Proitsi, Maltina Shkodra, Maria Tena, Parthi Srinivasan, Nigel Heaton, Wayel Jassem, Cristina Legido‐Quigley
Software Mentions: 3
Published: almost 11 years ago

10.1038/srep29059

Redefining the “carrier” state for foot-and-mouth disease from the dynamics of virus persistence in endemically affected cattle populations
Cited by: 24
Author(s): Barend M. deC. Bronsvoort, Ian Handel, Charles Nfon, K. J. Sørensen, Viviana Malirat, I Bergmann, Vincent N. Tanya, K. L. Morgan
Software Mentions: 3
Published: over 10 years ago

10.1038/srep36051

Serological and molecular epidemiology of canine adenovirus type 1 in red foxes (Vulpes vulpes) in the United Kingdom
Cited by: 27
Author(s): David H. Walker, S. Fee, G. G. Hartley, Jane Learmount, Maria O’Hagan, Anna Meredith, Barend M. deC. Bronsvoort, Thibaud Porphyre, Colin Sharp, Adrian Philbey
Software Mentions: 3
Published: almost 10 years ago

10.1038/s41598-017-06675-1

Richer gut microbiota with distinct metabolic profile in HIV infected Elite Controllers
Cited by: 70
Author(s): Jan Vesterbacka, Javier Rivera, Kajsa Noyan, Mariona Parera, Ujjwal Neogi, M. Luz Calle, Roger Paredes, Anders Sönnerborg, Marc Noguera-Julián, Piotr Nowak
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-017-12104-0

Accumulation of minor alleles and risk prediction in schizophrenia
Cited by: 16
Author(s): Huimin Pang, Xianfu Lei, Dejian Yuan, Zuobin Zhu, Shi Huang
Software Mentions: 3
Published: about 9 years ago

10.1038/s41598-017-14418-5

Promoter-level transcriptome in primary lesions of endometrial cancer identified biomarkers associated with lymph node metastasis
Cited by: 10
Author(s): Emiko Yoshida, Yasuhisa Terao, Noriko Hayashi, Kaoru Mogushi, Atsushi Arakawa, Yuji Tanaka, Yoshiaki Ito, Hiroko Ohmiya, Yoshihide Hayashizaki, Satoru Takeda, Masayoshi Itoh, Hideya Kawaji
Software Mentions: 3
Published: about 9 years ago

10.1038/s41598-018-35920-4

Cytokine Thresholds in Gingival Crevicular Fluid with Potential Diagnosis of Chronic Periodontitis Differentiating by Smoking Status
Cited by: 16
Author(s): Nora Arias-Bujanda, Alba Regueira-Iglesias, Manuela Alonso-Sampedro, Maria Mercedes González-Peteiro, Álex Mira, Carlos Balsa-Castro, Inmaculada Tomás
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-019-40976-x

High-throughput epitope profiling of antibodies in the plasma of Alzheimer’s disease patients using random peptide microarrays
Cited by: 11
Author(s): Kyu-Young Sim, Sangheon Park, Kyu Yeong Choi, Jung Eun Park, Jung Sup Lee, Byeong C. Kim, Jeonghwan Gwak, Woo Keun Song, Kun Ho Lee, Sung‐Gyoo Park
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-019-45705-y

Relevant Word Order Vectorization for Improved Natural Language Processing in Electronic Health Records
Cited by: 7
Author(s): Jeffrey Thompson, Jinxiang Hu, Dinesh Pal Mudaranthakam, David Streeter, Lisa Neums, Michele Park, Devin C. Koestler, Byron Gajewski, Roy A. Jensen, Matthew S. Mayo
Software Mentions: 3
Published: over 7 years ago

10.7150/ijms.47356

Potential mechanism of RRM2 for promoting Cervical Cancer based on weighted gene co-expression network analysis
Cited by: 11
Author(s): Jingtao Wang, Yuexiong Yi, Yurou Chen, Ye Xiong, Wei Zhang
Software Mentions: 3
Published: almost 7 years ago

10.3390/ijerph15020277

Identification of Pancreatic Injury in Patients with Elevated Amylase or Lipase Level Using a Decision Tree Classifier: A Cross-Sectional Retrospective Analysis in a Level I Trauma Center
Cited by: 14
Author(s): Cheng-Shyuan Rau, Shao-Chun Wu, Peng‐Chen Chien, Pao‐Jen Kuo, Yi‐Chun Chen, Hsiao-Yun Hsieh, Ching-Hua Hsieh, Hang-Tsung Liu
Software Mentions: 3
Published: over 8 years ago

10.3390/ijerph16020250

Deep Learning Algorithms with Demographic Information Help to Detect Tuberculosis in Chest Radiographs in Annual Workers’ Health Examination Data
Cited by: 65
Author(s): Seok‐Jae Heo, Yangwook Kim, Sehyun Yun, Sung Shil Lim, Jihyun Kim, Chung Mo Nam, Sohee Park, Inkyung Jung, Jin Ha Yoon
Software Mentions: 3
Published: almost 8 years ago

10.3390/ijerph17103703

A Machine Learning-Based Approach for Predicting Patient Punctuality in Ambulatory Care Centers
Cited by: 23
Author(s): Sharan Srinivas
Software Mentions: 3
Published: over 6 years ago

10.1186/s40560-019-0418-9

Role of serial lactate measurement to predict 28-day mortality in patients undergoing emergency laparotomy for perforation peritonitis: prospective observational study
Cited by: 10
Author(s): Sherry Jobin, Souvik Maitra, Dalim Kumar Baidya, Rajeshwari Subramaniam, G. Lakshmi Prasad, V. Seenu
Software Mentions: 3
Published: almost 7 years ago

10.1136/jmedgenet-2020-107003

Assessing performance of pathogenicity predictors using clinically relevant variant datasets
Cited by: 45
Author(s): Adam C. Gunning, Verity Fryer, James Fasham, Andrew H. Crosby, Sian Ellard, Emma L. Baple, Caroline F. Wright
Software Mentions: 3
Published: about 6 years ago

10.7554/eLife.50240

Adjusting for age improves identification of gut microbiome alterations in multiple diseases
Cited by: 100
Author(s): Tarini Shankar Ghosh, Mrinmoy Das, Ian B. Jeffery, Paul W. O’Toole
Software Mentions: 3
Published: over 6 years ago

10.7554/eLife.13323

NIH peer review percentile scores are poorly predictive of grant productivity
Cited by: 69
Author(s): Ferric C. Fang, Anthony Bowen, Arturo Casadevall
Software Mentions: 3
Published: over 10 years ago

10.3390/ijms17060886

Gene Set-Based Functionome Analysis of Pathogenesis in Epithelial Ovarian Serous Carcinoma and the Molecular Features in Different FIGO Stages
Cited by: 10
Author(s): Chia Ming Chang, Chi Mu Chuang, Mong‐Lien Wang, Ming Yang, Chi-Ching Chang, Ming Shyen Yen, Shih Hwa Chiou
Software Mentions: 3
Published: over 10 years ago

10.3390/ijms18020449

Exhaled Breath Metabolomics for the Diagnosis of Pneumonia in Intubated and Mechanically-Ventilated Intensive Care Unit (ICU)-Patients
Cited by: 44
Author(s): Pouline M. P. van Oort, Sanne de Bruin, Hans Weda, Hugo H. Knobel, Marcus J. Schultz, Lieuwe Bos
Software Mentions: 3
Published: over 9 years ago

10.3390/ijms20133360

Metabolomic Studies of Tissue Injury in Nonhuman Primates Exposed to Gamma-Radiation
Cited by: 22
Author(s): Amrita K. Cheema, Khyati Y. Mehta, Meena Rajagopal, Stephen Y. Wise, Oluseyi O. Fatanmi, Vijay K. Singh
Software Mentions: 3
Published: over 7 years ago

10.3390/ijms21113791

Serum Biomarkers for Connective Tissue and Basement Membrane Remodeling Are Associated with Vertebral Endplate Bone Marrow Lesions as Seen on MRI (Modic Changes)
Cited by: 11
Author(s): Stefan Dudli, Alexander Ballatori, Anne‐Christine Bay‐Jensen, Zachary L. McCormick, Conor O’Neill, Sibel Demir‐Deviren, Roland Krug, Irina Heggli, Astrid Juengel, Jaro Karppinen, Florian Brunner, Mazda Farshad, Oliver Distler, Jeffrey C. Lotz, Aaron J. Fields
Software Mentions: 3
Published: over 6 years ago

10.2196/17332

Electronic Cognitive Screen Technology for Screening Older Adults With Dementia and Mild Cognitive Impairment in a Community Setting: Development and Validation Study
Cited by: 17
Author(s): Joyce Y.C. Chan, Adrian Wong, Brian Yiu, Hazel Mok, Patti Lam, Pauline Kwan, Adrienne S. Chan, Vincent Chung Tong Mok, Kelvin K.F. Tsoi, Timothy Kwok
Software Mentions: 3
Published: almost 6 years ago

10.1089/neu.2019.6375

A Serum Protein Biomarker Panel Improves Outcome Prediction in Human Traumatic Brain Injury
Cited by: 114
Author(s): Eric Peter Thelin, Faiez Al Nimer, Arvid Frostell, Henrik Zetterberg, Kaj Blennow, Harriet Nyström, Mikael Svensson, Bo‐Michael Bellander, Fredrik Piehl, David W. Nelson
Software Mentions: 3
Published: about 7 years ago

10.1155/2021/5512325

Classification of Lung Adenocarcinoma Based on Immune Checkpoint and Screening of Related Genes
Cited by: 6
Author(s): Ting Zhou, Ping Yang, Sanyuan Tang, Zhongshan Zhu, Xiaobing Li, Yang Zhou, Ruoxi Wu, Xuefei Tian, Liang Li
Software Mentions: 3
Published: over 5 years ago

10.1186/s13048-020-00712-w

A novel signature of two long non-coding RNAs in BRCA mutant ovarian cancer to predict prognosis and efficiency of chemotherapy
Cited by: 4
Author(s): Yinglian Pan, Jia Li, Yuzhu Liu, Yiyu Han, Qian Li, Qin Zou, Zhongpei Zhang, Jin Long Huang, Qingchun Deng
Software Mentions: 3
Published: about 6 years ago

10.18632/oncotarget.17329

Identification of aberrantly expressed long non-coding RNAs in stomach adenocarcinoma
Cited by: 49
Author(s): Jianbin Gu, Yong Li, Li Fan, Qun Zhao, Bibo Tan, Kelei Hua, Guobin Wu
Software Mentions: 3
Published: over 9 years ago

10.18632/oncotarget.18512

Identification of dysregulated long non-coding RNAs/microRNAs/mRNAs in TNM I stage lung adenocarcinoma
Cited by: 35
Author(s): Ziqiang Tian, Wen Pang Su, Yuefeng Zhang, Xinqiang Shi, Yao Zhu, Yong Xu, Huilai Lv, Guiying Wang
Software Mentions: 3
Published: over 9 years ago

10.18632/oncotarget.27301

Pre-surgical connectome features predict IDH status in diffuse gliomas
Cited by: 12
Author(s): Shelli R. Kesler, Rebecca Harrison, Melissa Petersen, Vikram Rao, Hannah Dyson, Kristin Alfaro-Munoz, Shiao Pei Weathers, John de Groot
Software Mentions: 3
Published: almost 7 years ago

10.1093/jrr/rrz027

CT-based radiomic signatures for prediction of pathologic complete response in esophageal squamous cell carcinoma after neoadjuvant chemoradiotherapy
Cited by: 49
Author(s): Yang Zy, Binghui He, Xinyu Zhuang, Xiaoying Gao, Dandan Wang, Mei Li, Zhongqiu Lin, Ren Luo
Software Mentions: 3
Published: over 7 years ago

10.1186/s12967-018-1732-z

Integrated analysis of dysregulated long non-coding RNAs/microRNAs/mRNAs in metastasis of lung adenocarcinoma
Cited by: 49
Author(s): Lifeng Li, Mengle Peng, Wenhua Xue, Zhirui Fan, Tian Wang, Jingyao Lian, Yunkai Zhai, Wenping Lian, Dongchun Qin, Jie Zhao
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12967-016-0886-9

Serum microRNA-1233 is a specific biomarker for diagnosing acute pulmonary embolism
Cited by: 33
Author(s): Thorsten Kessler, Jeanette Erdmann, Baiba Vilne, Petra Bruse, Volkhard Kurowski, Patrick Diemert, Heribert Schunkert, Hendrik B. Sager
Software Mentions: 3
Published: over 10 years ago

10.1186/s12986-018-0296-5

Metabolomic profiles associated with bone mineral density in US Caucasian women.
Cited by: 42
Author(s): Qi Zhao, Hui Shen, Kuan-Jui Su, Ji Gang Zhang, Qing Tian, Liang Zhao, Chuan Qiu, Zhang Qiang, Timothy J. Garrett, Jiawang Liu, Hong Wen Deng
Software Mentions: 3
Published: almost 9 years ago

10.3390/nu13061753

The Efficacy of Short-Term Weight Loss Programs and Consumption of Natural Probiotic Bryndza Cheese on Gut Microbiota Composition in Women
Cited by: 13
Author(s): Ivan Hric, Simona Ugrayová, Adela Penesová, Žofia Rádiková, Libuša Kubáňová, Sára Šardzíková, Eva Baranovičová, Ľuboš Klučár, Gábor Beke, Marián Grendár, Martin Kolísek, Katarína Šoltýs, Viktor Bielik
Software Mentions: 3
Published: over 5 years ago

10.3390/nu9030233

Integration of Traditional and Metabolomics Biomarkers Identifies Prognostic Metabolites for Predicting Responsiveness to Nutritional Intervention against Oxidative Stress and Inflammation
Cited by: 15
Author(s): You Jin Kim, Iksoo Huh, Ji Yeon Kim, Saejong Park, Sung Ha Ryu, Kyu Bong Kim, Suhkmann Kim, Taesung Park, Oran Kwon
Software Mentions: 3
Published: over 9 years ago

10.3389/fgene.2020.607009

Identification of an Immune-Related Gene Signature to Improve Prognosis Prediction in Colorectal Cancer Patients
Cited by: 16
Author(s): Siqi Dai, Shengwen Xu, Ye Yao, Kefeng Ding
Software Mentions: 2
Published: almost 6 years ago

10.3389/fneur.2021.619864

CT Angiography-Based Radiomics for Classification of Intracranial Aneurysm Rupture
Cited by: 10
Author(s): Osamah Alwalid, Xi Liu, Mingfei Xie, Jiehua Yang, Chunyuan Cen, Huan Liu, Ping Han
Software Mentions: 2
Published: over 5 years ago

10.21203/rs.3.rs-126892/v1

Federated Learning used for predicting outcomes in SARS-COV-2 patients
Cited by: 16
Author(s): Mona G. Flores, Ittai Dayan, Holger R. Roth, Aoxiao Zhong, Ahmed Harouni, Amilcare Gentili, Anas Z. Abidin, Andy Liu, Anthony Costa, Bradford J. Wood, Chien‐Sung Tsai, Chih‐Hung Wang, Chun‐Nan Hsu, C K Lee, Colleen Ruan, Daguang Xu, Dufan Wu, Eddie Huang, Felipe Kitamura, Griffin Lacey, Gustavo César de Antônio Corradi, Hao-Hsin Shin, Hirofumi Obinata, Rutai Hui, Jason C. Crane, Jesse Tetreault, Jiahui Guan, John W. Garrett, Jung Gil Park, Keith Dreyer, Krishna Juluru, Kristopher Kersten, Márcio Aloisio Bezerra Cavalcanti Rockenbach, Marius George Linguraru, Masoom A. Haider, Meena AbdelMaseeh, Nicola Rieke, Pablo F. Damasceno, Pedro Mário Cruz e Silva, Po-Chuan Wang, Sheng Xu, Shuichi Kawano, Sira Sriswa, Soo Young Park, Thomas M. Grist, Varun Buch, Watsamon Jantarabenjakul, Weichung Wang, Won Young Tak, Xiang Li, Xihong Lin, Fred Kwon, Fiona J. Gilbert, Joshua D. Kaggie, Quanzheng Li, Abood Quraini, Andrew Feng, Andrew N. Priest, Barış Türkbey, Benjamin S. Glicksberg, Bernardo C. Bizzo, Byung Seok Kim, Carlos Tor-Díez, Chia-Cheng Lee, Chia‐Jung Hsu, Chin Lin, Chin-Lun Lai, Christopher P. Hess, Colin B. Compas, Deepi Bhatia, Eric K. Oermann, Evan Leibovitz, Hisashi Sasaki, Hitoshi Mori, Isaac Yang, Jae Ho Sohn, Krishna Nand Keshava Murthy, Li‐Chen Fu, Matheus R. F. Mendonça, Mike Fralick, Min Kyu Kang, Mohammad Adil, Natalie Gangai, Peerapon Vateekul, Pierre Elnajjar, Sarah Hickman, Sharmila Majumdar, Shelley McLeod, Sheridan L. Reed, Stefan Gräf, Stephanie Harmon, Tatsuhiko Kodama, Thanyawee Puthanakit, Tony Mazzulli, Vitor de Lima Lavor, Yothin Rakvongthai, Yu Rim Lee, Yuhong Wen
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12859-019-2853-y

Capturing the differences between humoral immunity in the normal and tumor environments from repertoire-seq of B-cell receptors using supervised machine learning
Cited by: 23
Author(s): Hiroki Konishi, Daisuke Komura, Hiroto Katoh, Saoko Atsumi, Hirotomo Koda, Asami Yamamoto, Yasuyuki Seto, Masashi Fukayama, Rui Yamaguchi, Seiya Imoto, Shumpei Ishikawa
Software Mentions: 2
Published: over 7 years ago

10.3389/fgene.2021.642991

Origin Sample Prediction and Spatial Modeling of Antimicrobial Resistance in Metagenomic Sequencing Data
Cited by: 3
Author(s): Maya Zhelyazkova, Roumyana Yordanova, Iliyan Mihaylov, Stefan Kirov, Stefan Tsonev, David Danko, Christopher E. Mason, Dimitar Vassilev
Software Mentions: 2
Published: over 5 years ago

10.18632/oncotarget.9963

HER2-HER3 dimer quantification by FLIM-FRET predicts breast cancer metastatic relapse independently of HER2 IHC status
Cited by: 27
Author(s): Gregory Weitsman, Paul R. Barber, Lan K. Nguyen, Katherine Lawler, Gargi Patel, Natalie Woodman, Muireann Kelleher, Sarah Pinder, Mark Rowley, Paul Ellis, Arnie Purushotham, A. C. C. Coolen, Boris N. Kholodenko, Borivoj Vojnovic, Cheryl Gillett, Tony Ng
Software Mentions: 2
Published: over 10 years ago

10.1186/s12931-018-0828-6

Circulating microRNAs and prediction of asthma exacerbation in childhood asthma
Cited by: 62
Author(s): Alvin T. Kho, Michael J. McGeachie, Kip G. Moore, Jody M. Sylvia, Scott T. Weiss, Kelan G. Tantisira
Software Mentions: 2
Published: over 8 years ago

10.3389/fneur.2020.00013

Automated Grading of Cerebral Vasospasm to Standardize Computed Tomography Angiography Examinations After Subarachnoid Hemorrhage
Cited by: 11
Author(s): Axel Neulen, Svenja Kunzelmann, Michael Kosterhon, Tobias Pantel, Maximilian Stein, Manfred Berres, Florian Ringel, Marc A. Brockmann, Carolin Brockmann, Sven R. Kantelhardt
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pntd.0005709

Identifying wildlife reservoirs of neglected taeniid tapeworms: Non-invasive diagnosis of endemic Taenia serialis infection in a wild primate population
Cited by: 12
Author(s): India Schneider‐Crease, Rodger W. Griffin, Megan A. Gomery, Pierre Dorny, John Noh, Sukwan Handali, Holly M. Chastain, Patricia P. Wilkins, Charles L. Nunn, Noah Snyder‐Mackler, Jacinta C. Beehner, Thore J. Bergman
Software Mentions: 2
Published: over 9 years ago

10.1186/s12931-021-01761-5

A novel miRNA biomarker panel associated with mortality in pediatric patients with ARDS
Cited by: 4
Author(s): Lisa Lee, Mansoureh Eghbali, Anil Sapru
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.7070

PGM5: a novel diagnostic and prognostic biomarker for liver cancer
Cited by: 47
Author(s): Yan Jiao, Yanqing Li, Peiqiang Jiang, Wei Han, Yahui Liu
Software Mentions: 2
Published: over 7 years ago

10.3389/fgene.2021.680617

Development of a Four-mRNA Expression-Based Prognostic Signature for Cutaneous Melanoma
Cited by: 5
Author(s): Halbert Bai, Youliang Wang, Huimin Liu, Junyang Lu
Software Mentions: 2
Published: over 5 years ago

10.1155/2018/9362820

Maternal Plasma Metabolomic Profiles in Spontaneous Preterm Birth: Preliminary Results
Cited by: 19
Author(s): Barbara Lizewska, Joanna Teul, Paweł Kuć, Adam Lemancewicz, Karol Charkiewicz, Joanna Gościk, Marian Kacerovský, Ramkumar Menon, Wojciech Miltyk, Piotr Laudański
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12859-021-04345-8

The regulatory pattern of target gene expression by aberrant enhancer methylation in glioblastoma
Cited by: 4
Author(s): Xiaoxiao Zhao, Jianghuai Ji, Wang Shi-jia, Rendong Wang, Qiuhong Yu, Dongguo Li
Software Mentions: 2
Published: about 5 years ago

10.7717/peerj.11427

Identification of diagnostic genes and vital microRNAs involved in rheumatoid arthritis: based on data mining and experimental verification
Cited by: 6
Author(s): Conglin Ren, Mingshuang Li, Yang Zheng, Fengqing Wu, Weibin Du, Renfu Quan
Software Mentions: 2
Published: over 5 years ago

10.1002/2211-5463.12576

Genome‐wide profiling of <scp>mRNA</scp> and lnc <scp>RNA</scp> expression in dengue fever and dengue hemorrhagic fever
Cited by: 5
Author(s): Xiaolan Zhang, Xiaoming Liao, Fei Shen, Hai-jian Yu, Wensheng Yan, Yunfang Zhang, Jia-Jun Ye, Zhi-Ping Lv
Software Mentions: 2
Published: over 7 years ago

10.1002/2211-5463.12228

Identification of genes associated with histologic tumor grade of esophageal squamous cell carcinoma
Cited by: 10
Author(s): Jiaqiang Xing, Cuicui Liu
Software Mentions: 2
Published: over 9 years ago

10.3389/pore.2021.1609784

Integrative Analysis of DNA Methylation and Gene Expression Profiles Identifies Colorectal Cancer-Related Diagnostic Biomarkers
Cited by: 4
Author(s): Mingyue Xu, Lijun Yuan, Yan Wang, Shuo Chen, Lin Zhang, Xipeng Zhang
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pmed.1003381

Assessment of deep neural networks for the diagnosis of benign and malignant skin neoplasms in comparison with dermatologists: A retrospective validation study
Cited by: 21
Author(s): Seung Seog Han, Ik Jun Moon, Seong Hwan Kim, Jung Im Na, Myoung Shin Kim, Gyeong Hun Park, Ilwoo Park, Keewon Kim, Woohyung Lim, Ju Hee Lee, Sung Eun Chang
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pmed.1001916

A Molecular Host Response Assay to Discriminate Between Sepsis and Infection-Negative Systemic Inflammation in Critically Ill Patients: Discovery and Validation in Independent Cohorts
Cited by: 147
Author(s): Leo McHugh, Therese Seldon, Roslyn A. Brandon, James T. Kirk, Antony Rapisarda, Allison J. Sutherland, Jeffrey Presneill, Deon J. Venter, Jeffrey Lipman, Mervyn Thomas, Peter M. C. Klein Klouwenberg, Lonneke van Vught, Brendon P. Scicluna, Marc Bonten, Olaf L. Cremer, Marcus J. Schultz, Tom van der Poll, Thomas D. Yager, Richard B. Brandon
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12874-020-00957-5

Using estimated probability of pre-diagnosis behavior as a predictor of cancer survival time: an example in esophageal cancer
Cited by: 2
Author(s): Paul Fahey, Andrew Page, Graham N. Stone, Thomas Astell–Burt
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pmed.1003489

A combination of urinary biomarker panel and PancRISK score for earlier detection of pancreatic cancer: A case–control study
Cited by: 23
Author(s): Silvana Debernardi, Harrison O’Brien, Asma S. Algahmdi, Núria Malats, Grant D. Stewart, Marija Plješa-Ercegovac, Eithne Costello, William Greenhalf, Ahmed S. Saad, Rhiannon Roberts, Alexander Ney, Stephen P. Pereira, Hemant M. Kocher, Stephen W. Duffy, Oleg Blyuss, Tatjana Crnogorac‐Jurčević
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13071-015-1222-6

Environmental and anthropogenic factors affecting the probability of occurrence of Oncomegas wageneri (Cestoda: Trypanorhyncha) in the southern Gulf of Mexico
Cited by: 10
Author(s): Víctor M. Vidal‐Martínez, Edgar Tórres-Irineo, David Romero, Gerardo Gold-Bouchot, Enrique Martínez‐Meyer, David Valdés-Lozano, M. Leopoldina Aguirre-Macedo
Software Mentions: 2
Published: almost 11 years ago

10.3389/fnins.2021.708700

Foveal Remodeling of Retinal Microvasculature in Parkinson’s Disease
Cited by: 12
Author(s): Ane Murueta‐Goyena, Maitane Barrenechea, Asier Erramuzpe, Sara Teijeira-Portas, Marta Pengo, Unai Ayala, David Romero-Bascones, Marian Acera, Rocío Del Pino, Juan Carlos Gómez‐Esteban, Iñigo Gabilondo
Software Mentions: 2
Published: over 5 years ago

10.3389/fnins.2021.646617

Substantia Nigra Radiomics Feature Extraction of Parkinson’s Disease Based on Magnitude Images of Susceptibility-Weighted Imaging
Cited by: 7
Author(s): Qingguo Ren, Yihua Wang, Shanshan Leng, Xiaomin Nan, Bin Zhang, Xinyan Shuai, Jianyuan Zhang, Xiaona Xia, Ye Li, Yubin Ge, Xia Meng, Chuanzhi Zhao
Software Mentions: 2
Published: over 5 years ago

10.1186/s12874-019-0660-9

The triple variable index combines information generated over time from common monitoring variables to identify patients expressing distinct patterns of intraoperative physiology
Cited by: 0
Author(s): Michael P. Schnetz, Harry Hochheiser, David Danks, Douglas Landsittel, Keith M. Vogt, James W. Ibinson, S Whitehurst, Sean McDermott, Melissa Giraldo Duque, A. Murat Kaynar
Software Mentions: 2
Published: almost 8 years ago

10.1038/srep20602

Intestinal Microbiota Distinguish Gout Patients from Healthy Humans
Cited by: 213
Author(s): Zhuang Guo, Jiachao Zhang, Zhanli Wang, Kay Ying Ang, Shi Huang, Qiangchuan Hou, Xiaoquan Su, Jun Qiao, Yi Zheng, Lifeng Wang, Eileen Y. Koh, Ho Danliang, Jian Xu, Yuan Kun Lee, Heping Zhang
Software Mentions: 2
Published: over 10 years ago

10.3389/fcell.2021.664868

SARS-CoV-2 Causes Acute Kidney Injury by Directly Infecting Renal Tubules
Cited by: 22
Author(s): Zhaohui Chen, Junyi Hu, Lilong Liu, Rong Chen, Miao Wang, Momiao Xiong, Zhenqiong Li, Yi Zhao, Liu Hong, Chuhuai Guan, Jie Zhang, Liang Liu, Ke Chen, Yumei Wang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12911-021-01566-y

Patient similarity analytics for explainable clinical risk prediction
Cited by: 5
Author(s): Hao Sen Andrew Fang, Ngiap Chuan Tan, Wei Ying Tan, Ronald Wihal Oei, Mong Li Lee, Wynne Hsu
Software Mentions: 2
Published: over 5 years ago

10.1016/S2213-2600(19)30469-2

Blood transcriptional biomarkers for active pulmonary tuberculosis in a high-burden setting: a prospective, observational, diagnostic accuracy study
Cited by: 74
Author(s): Chris Turner, Gupta Rk, Evdokia Tsaliki, Jennifer Roe, Prasenjit Mondal, Georgina Nyawo, Zaida Palmer, R F Miller, Byron W P Reeve, Grant Theron, Mahdad Noursadeghi
Software Mentions: 2
Published: over 6 years ago

10.1186/s13071-015-0973-4

Does Triatoma brasiliensis occupy the same environmental niche space as Triatoma melanica?
Cited by: 13
Author(s): Rita de Cássia Moreira de Souza, Gabriel Henrique Campolina-Silva, Cláudia Mendonça Bezerra, Liléia Diotaiuti, David Eladio Gorla
Software Mentions: 2
Published: over 11 years ago

10.1186/1756-3305-6-71

Modelling the risk of being bitten by malaria vectors in a vector control area in southern Benin, west Africa
Cited by: 14
Author(s): Nicolas Moiroux, Abdul S Bio-Bangana, Armel Djènontin, Fabrice Chandre, Vincent Corbel, Hélène Guis
Software Mentions: 2
Published: over 13 years ago

10.1186/s12911-021-01576-w

Predicting clinical outcomes among hospitalized COVID-19 patients using both local and published models
Cited by: 12
Author(s): William L. Galanter, Jorge Mario Rodríguez-Fernández, Kevin Chow, Samuel Harford, Karl M. Kochendorfer, Maryam Pishgar, Julian Theis, John Zulueta, Houshang Darabi
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/3162581

Bioinformatics Analysis Reveals Diagnostic Markers and Vital Pathways Involved in Acute Coronary Syndrome
Cited by: 5
Author(s): Mingshuang Li, Conglin Ren, Chenxia Wu, Xinyao Li, Xinyi Li, Wei Mao
Software Mentions: 2
Published: almost 6 years ago

10.1186/1471-2105-13-331

Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study
Cited by: 110
Author(s): Lei Sun, Zhihua Zhang, Timothy L. Bailey, Andrew C. Perkins, Michael R. Tallack, Zhao‐Xu Xu, Hui Liu
Software Mentions: 2
Published: almost 14 years ago

10.3389/fonc.2016.00072

Relationship between the Temporal Changes in Positron-Emission-Tomography-Imaging-Based Textural Features and Pathologic Response and Survival in Esophageal Cancer Patients
Cited by: 46
Author(s): Stephen Yip, Thibaud Coroller, Nina N. Sanford, Harvey J. Mamon, Hugo J.W.L. Aerts, R. Berbeco
Software Mentions: 2
Published: over 10 years ago

10.1002/acn3.50965

Transmembrane protease serine 5: a novel Schwann cell plasma marker for CMT1A
Cited by: 24
Author(s): Hongge Wang, Matt Davison, Kathryn Wang, Tai-he Xia, Martin Kramer, Katherine M. Call, Jun Luo, Xingyao Wu, Riccardo Zuccarino, Chelsea Bacon, Yunhong Bai, John J. Moran, Laurie Gutmann, Shawna Feely, Tiffany Grider, Alexander M. Rossor, John Svaren, Michael E. Shy
Software Mentions: 2
Published: almost 7 years ago

10.3389/fonc.2020.581321

Predicting Axillary Lymph Node Status With a Nomogram Based on Breast Lesion Ultrasound Features: Performance in N1 Breast Cancer Patients
Cited by: 8
Author(s): Yanwen Luo, Chenyang Zhao, Yuanjing Gao, Mengsu Xiao, Wenbo Li, Jing Zhang, Li Ma, Jing Qin, Yuxin Jiang, Qingli Zhu
Software Mentions: 2
Published: about 6 years ago

10.1038/srep43326

Unravelling the metabolic impact of SBS-associated microbial dysbiosis: Insights from the piglet short bowel syndrome model
Cited by: 17
Author(s): Prue M. Pereira‐Fantini, Sean G. Byars, James Pitt, Susan Lapthorne, Fiona Fouhy, Paul D. Cotter, Julie E Bines
Software Mentions: 2
Published: over 9 years ago

10.3389/fgene.2021.632385

An Improved Genome-Wide Polygenic Score Model for Predicting the Risk of Type 2 Diabetes
Cited by: 17
Author(s): Wei Liu, Zhenhuang Zhuang, Wenxiu Wang, Tao Huang, Liu Z
Software Mentions: 2
Published: over 5 years ago

10.12669/pjms.37.4.3371

Prediction of ICU admission after orthopedic surgery in elderly patients
Cited by: 1
Author(s): Yawen Tang, Hao Li, Zhiyong Guo
Software Mentions: 2
Published: over 5 years ago

10.1186/s12880-020-00458-3

Discrimination of benign from malignant breast lesions in dense breasts with model-based analysis of regions-of-interest using directional diffusion-weighted images
Cited by: 5
Author(s): Alan Penn, Milica Medved, Vandana Dialani, Etta D. Pisano, Elodia B. Cole, David C. Brousseau, Gregory S. Karczmar, Guimin Gao, Barry D. Reich, Hiroyuki Abé
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-017-00631-9

A Circulating MicroRNA Signature Capable of Assessing the Risk of Hepatocellular Carcinoma in Cirrhotic Patients
Cited by: 29
Author(s): Ya‐Hui Huang, Kung–Hao Liang, Rong‐Nan Chien, Tsung–Hui Hu, Kwang‐Huei Lin, Cheng–Lung Hsu, Chih‐Lang Lin, Tai‐Long Pan, Po‐Yuan Ke, Chau‐Ting Yeh
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-01332-z

Dysregulation of Blimp1 transcriptional repressor unleashes p130Cas/ErbB2 breast cancer invasion
Cited by: 16
Author(s): Marianna Sciortino, Maria del Pilar Camacho-Leal, Francesca Orso, Elena Grassi, Andrea Costamagna, Paolo Provero, Wayne Tam, Emilia Turco, Paola Defilippi, Daniela Taverna, Sara Cabodi
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pgen.1004122

Coherent Functional Modules Improve Transcription Factor Target Identification, Cooperativity Prediction, and Disease Association
Cited by: 31
Author(s): Konrad J. Karczewski, M Snyder, Russ B. Altman, Nicholas P. Tatonetti
Software Mentions: 2
Published: over 12 years ago

10.3389/fimmu.2019.01531

Global Transcriptome Profiling of Multiple Porcine Organs Reveals Toxoplasma gondii-Induced Transcriptional Landscapes
Cited by: 8
Author(s): Jun-Jun He, Jun Ma, Jin‐Lei Wang, Fu-Kai Zhang, Jiexi Li, Bintao Zhai, Ze-Xiang Wang, Hany M. Elsheikha, Xingquan Zhu
Software Mentions: 2
Published: over 7 years ago

10.1186/s12920-021-00888-0

Novel prognostic genes and subclasses of acute myeloid leukemia revealed by survival analysis of gene expression data
Cited by: 4
Author(s): Yanli Lai, Guifang Ouyang, Lixia Sheng, Yanli Zhang, Binbin Lai, Miao Zhou
Software Mentions: 2
Published: over 5 years ago

10.1186/s12881-015-0176-z

Assessment of the predictive accuracy of five in silico prediction tools, alone or in combination, and two metaservers to classify long QT syndrome gene mutations
Cited by: 73
Author(s): Ivone Leong, Alexander Stuckey, Daniel Lai, Jonathan R. Skinner, Donald R. Love
Software Mentions: 2
Published: over 11 years ago

10.1007/s00345-015-1650-0

Targeted transperineal biopsy of the prostate has limited additional benefit over background cores for larger MRI-identified tumors
Cited by: 8
Author(s): Tristan Barrett, Andrew J. Patterson, Brendan Koo, Karan Wadhwa, Anne Y. Warren, Andrew Doble, Vincent Gnanapragasam, Christof Kastner, Ferdia A. Gallagher
Software Mentions: 2
Published: about 11 years ago

10.18632/oncotarget.14105

Papanicolaou Society of Cytopathology new guidelines have a greater ability of risk stratification for pancreatic endoscopic ultrasound-guided fine-needle aspiration specimens
Cited by: 12
Author(s): Bin Chen, Yu Zhao, Jiangang Gu, Huanwen Wu, Liang Zeng, Zhilan Meng
Software Mentions: 2
Published: almost 10 years ago

10.1155/2021/9928065

External Validation of UDCA Response Score in Slovak and Croatian Patients with Primary Biliary Cholangitis
Cited by: 1
Author(s): Jakub Gazda, Martin Janíčko, Sylvia Dražilová, Ivica Grgurević, Tajana Filipec Kanižaj, Tomáš Koller, Beatrica Bodorovska, Maja Mijić, Ivana Mikolašević, Ivana Knežević Štromar, Branislav Kucinsky, Matej Gazda, Peter Jarčuška
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-06674-2

Cytokine-based Predictive Models to Estimate the Probability of Chronic Periodontitis: Development of Diagnostic Nomograms
Cited by: 27
Author(s): Inmaculada Tomás, Nora Arias-Bujanda, Manuela Alonso-Sampedro, M. Casares de Cal, César Andrés Sánchez Sellero, David Suárez-Quintanilla, Carlos Balsa-Castro
Software Mentions: 2
Published: about 9 years ago

10.1111/cns.13137

Molecular and clinical characterization of TMEM71 expression at the transcriptional level in glioma
Cited by: 19
Author(s): Kuanyu Wang, Ruoyu Huang, Xuezhi Tong, Ke‐Nan Zhang, Yanwei Liu, Fan Zeng, Huimin Hu, Tao Jiang
Software Mentions: 2
Published: over 7 years ago

10.1186/s12916-021-02116-z

Activated gut-homing CD8+ T cells for coeliac disease diagnosis on a gluten-free diet
Cited by: 3
Author(s): Fernando Fernández‐Bañares, Natalia López-Palacios, María Corzo, Beatriz Arau, Mercedes Rubio, Marta Fernández-Prieto, Eva Tristán, Mar Pujals, Sergio Farrais, Saúl Horta, J. Hernández, Marta Gómez-Perosanz, Pedro A. Reche, María Esteve, Concepción Núñez
Software Mentions: 2
Published: about 5 years ago

10.1186/1471-2105-13-272

Gene expression anti-profiles as a basis for accurate universal cancer signatures
Cited by: 43
Author(s): Héctor Corrada Bravo, Vasyl Pihur, Matthew N. McCall, Rafael A. Irizarry, Jeffrey T. Leek
Software Mentions: 2
Published: about 14 years ago

10.1038/s41598-017-15031-2

Plasmodium falciparum parasites with histidine-rich protein 2 (pfhrp2) and pfhrp3 gene deletions in two endemic regions of Kenya
Cited by: 83
Author(s): Khalid B. Beshir, Nuno Sepúlveda, Jameel Bharmal, Ailie Robinson, Julian Mwanguzi, Annette O. Busula, Jetske G. de Boer, Colin J. Sutherland, Jane Cunningham, Heidi Hopkins
Software Mentions: 2
Published: almost 9 years ago

Projects: cran: pROC

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Science Score: 95/100

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Papers Mentioning pROC 1,740