cran: pROC | Projects | Ecosyste.ms: Papers

10.1002/2211-5463.12433

An integrated analysis of genome‐wide <scp>DNA</scp> methylation and gene expression data in hepatocellular carcinoma
Cited by: 32
Author(s): Xiaojiang Sun, Mingchun Wang, Fenghua Zhang, Xiao Kong
Software Mentions: 3
Published: about 8 years ago

10.1186/s12967-018-1732-z

Integrated analysis of dysregulated long non-coding RNAs/microRNAs/mRNAs in metastasis of lung adenocarcinoma
Cited by: 49
Author(s): Lifeng Li, Mengle Peng, Wenhua Xue, Zhirui Fan, Tian Wang, Jingyao Lian, Yunkai Zhai, Wenping Lian, Dongchun Qin, Jie Zhao
Software Mentions: 3
Published: over 7 years ago

10.3390/nu13061753

The Efficacy of Short-Term Weight Loss Programs and Consumption of Natural Probiotic Bryndza Cheese on Gut Microbiota Composition in Women
Cited by: 13
Author(s): Ivan Hric, Simona Ugrayová, Adela Penesová, Žofia Rádiková, Libuša Kubáňová, Sára Šardzíková, Eva Baranovičová, Ľuboš Klučár, Gábor Beke, Marián Grendár, Martin Kolísek, Katarína Šoltýs, Viktor Bielik
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2016.00949

Prediction of Biofilm Inhibiting Peptides: An In silico Approach
Cited by: 38
Author(s): Sudheer Gupta, Ashok Sharma, Shubham K. Jaiswal, Vineet K. Sharma
Software Mentions: 3
Published: about 10 years ago

10.1371/journal.pone.0248480

Invasive species trait-based risk assessment for non-native freshwater fishes in a tropical city basin in Southeast Asia
Cited by: 9
Author(s): Joleen Chan, Yiwen Zeng, Darren C. J. Yeo
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2021.660403

Mining of Gram-Negative Surface-Active Enzybiotic Candidates by Sequence-Based Calculation of Physicochemical Properties
Cited by: 9
Author(s): Roberto Vázquez, Sofía Blanco-Gañán, Susana Ruíz, Pedro Garcı́a
Software Mentions: 3
Published: about 5 years ago

10.3389/fonc.2019.00671

Frequency and Prognosis of Pulmonary Metastases in Newly Diagnosed Gastric Cancer
Cited by: 12
Author(s): Zhiwei Sun, Hao Líu, Jiang Yu, Weicai Huang, Zhen Han, Tian Lin, Hao Chen, Mingli Zhao, Yanfeng Hu, Yuming Jiang, Guoxin Li
Software Mentions: 3
Published: about 7 years ago

10.3389/fimmu.2020.628971

Disease Severity, Fever, Age, and Sex Correlate With SARS-CoV-2 Neutralizing Antibody Responses
Cited by: 45
Author(s): Stephan Schlickeiser, Tatjana Schwarz, Sophie Steiner, Kirsten Wittke, Nabeel Al Besher, Oliver Meyer, Ulrich Kalus, Axel Pruß, Florian Kurth, Thomas Zöller, Martin Witzenrath, Leif Erik Sander, Marcel A. Müller, Carmen Scheibenbogen, Hans‐Dieter Volk, Christian Drosten, Victor M. Corman, Leif G. Hanitsch
Software Mentions: 3
Published: over 5 years ago

10.1007/s00259-021-05326-y

Real-time intraoperative glioma diagnosis using fluorescence imaging and deep convolutional neural networks
Cited by: 16
Author(s): Biluo Shen, Zhe Zhang, Xiaojing Shi, Chuanxiang Cao, Zeyu Zhang, Zhenhua Hu, Nan Ji, Jie Tian
Software Mentions: 3
Published: over 5 years ago

10.1007/s10875-021-01005-7

A Minimal Parameter Set Facilitating Early Decision-making in the Diagnosis of Hemophagocytic Lymphohistiocytosis
Cited by: 7
Author(s): Bas M. Smits, Joris van Montfrans, Samuel A. Merrill, Lisette van de Corput, Mariëlle van Gijn, Andrica de Vries, Cor van den Bos, Floor Abbink, Renate G. van der Molen, Natasja Dors, Caroline A. Lindemans, Jaap Jan Boelens, Stefan Nierkens
Software Mentions: 3
Published: over 5 years ago

10.1186/s13321-016-0158-y

Rocker: Open source, easy-to-use tool for AUC and enrichment calculations and ROC visualization
Cited by: 69
Author(s): Sakari Lätti, Sanna Niinivehmas, Olli T. Pentikäinen
Software Mentions: 3
Published: almost 10 years ago

10.1371/journal.pntd.0004411

Disease Risk Perception and Safety Practices: A Survey of Australian Flying Fox Rehabilitators
Cited by: 6
Author(s): Cecilia A. Sánchez, Michelle L. Baker
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0165513

The Structure and Distribution of Benthic Communities on a Shallow Seamount (Cobb Seamount, Northeast Pacific Ocean)
Cited by: 33
Author(s): Cherisse Du Preez, Janelle M. R. Curtis, M. Elizabeth Clarke
Software Mentions: 3
Published: almost 10 years ago

10.3389/fphar.2019.01665

Patient-Level Effectiveness Prediction Modeling for Glioblastoma Using Classification Trees
Cited by: 3
Author(s): Tine Geldof, Nancy Van Damme, Isabelle Huys, Walter Van Dyck
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pntd.0009579

Effect of habitat fragmentation on rural house invasion by sylvatic triatomines: A multiple landscape-scale approach
Cited by: 11
Author(s): Miriam Cardozo, Federico Gastón Fiad, Liliana Crocco, David Eladio Gorla
Software Mentions: 3
Published: about 5 years ago

10.3389/fpsyt.2016.00034

Utility of Machine-Learning Approaches to Identify Behavioral Markers for Substance Use Disorders: Impulsivity Dimensions as Predictors of Current Cocaine Dependence
Cited by: 53
Author(s): Woo-Young Ahn, Divya Ramesh, F. Gerard Moeller, Jasmin Vassileva
Software Mentions: 3
Published: over 10 years ago

10.3389/fped.2021.688272

A Novel Framework for Phenotyping Children With Suspected or Confirmed Infection for Future Biomarker Studies
Cited by: 22
Author(s): Ruud Nijman, Rianne Oostenbrink, Henriëtte A. Moll, Climent Casals-Pascual, Ulrich von Both, Aubrey Cunnington, Tisham De, Irini Eleftheriou, Marieke Emonts, Colin G. Fink, Michiel van der Flier, Ronald de Groot, Myrsini Kaforou, Benno Kohlmaier, Taco W. Kuijpers, Emma Lim, Ian Maconochie, Stéphane Paulus, Federico Martinón‐Torres, Marko Pokorn, Sam Romaine, Irene Rivero‐Calle, Luregn J. Schlapbach, Frank J Smit, Μαρία Τσολιά, Effua Usuf, Victoria J. Wright, Shunmay Yeung, Dace Zavadska, Werner Zenz, Michael Levin, Jethro Herberg, Enitan D. Carrol
Software Mentions: 3
Published: about 5 years ago

10.3389/fbioe.2015.00023

Analytical Methods in Untargeted Metabolomics: State of the Art in 2015
Cited by: 465
Author(s): Arnald Alonso, Sara Marsal, Antonio Julià
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0195861

Machine learning-based diagnosis for disseminated intravascular coagulation (DIC): Development, external validation, and comparison to scoring systems
Cited by: 9
Author(s): Jihoon G. Yoon, JoonNyung Heo, Minkyu Kim, Yu Jin Park, Min Hyuk Choi, Jaewoo Song, Kangsan Wyi, Hakbeen Kim, Olivier Duchenne, Soowon Eom, Yury Tsoy
Software Mentions: 3
Published: over 8 years ago

10.3389/fimmu.2021.712859

Assessment of Expression of SOCS Genes in Acquired Immune-Mediated Polyneuropathies
Cited by: 0
Author(s): Mohammad Taheri, Somayeh Sangseifid, Pariya Shahani, Mohammad Mahdi Eftekharian, Shahram Arsang‐Jang, Soudeh Ghafouri‐Fard
Software Mentions: 3
Published: about 5 years ago

10.3390/ijms21113791

Serum Biomarkers for Connective Tissue and Basement Membrane Remodeling Are Associated with Vertebral Endplate Bone Marrow Lesions as Seen on MRI (Modic Changes)
Cited by: 11
Author(s): Stefan Dudli, Alexander Ballatori, Anne‐Christine Bay‐Jensen, Zachary L. McCormick, Conor O’Neill, Sibel Demir‐Deviren, Roland Krug, Irina Heggli, Astrid Juengel, Jaro Karppinen, Florian Brunner, Mazda Farshad, Oliver Distler, Jeffrey C. Lotz, Aaron J. Fields
Software Mentions: 3
Published: about 6 years ago

10.3390/diagnostics11061016

Contrast-Enhanced Black Blood MRI Sequence Is Superior to Conventional T1 Sequence in Automated Detection of Brain Metastases by Convolutional Neural Networks
Cited by: 5
Author(s): Jonathan Kottlors, Simon Geißen, Hannah Jendreizik, Nils Große Hokamp, Philipp Fervers, Lenhard Pennig, Kai Roman Laukamp, Christoph Kabbasch, David Maintz, Marc Schlamann, Jan Borggrefe
Software Mentions: 3
Published: about 5 years ago

10.1186/s12933-021-01299-2

Metabolic syndrome and the plasma proteome: from association to causation
Cited by: 16
Author(s): Mohamed A. Elhadad, Rory Wilson, Shaza B. Zaghlool, Cornelia Huth, Christian Gieger, Harald Grallert, Johannes Graumann, Wolfgang Rathmann, Wolfgang Köenig, Moritz F. Sinner, Kristian Hveem, Karsten Suhre, Barbara Thorand, Christian Jonasson, Mélanie Waldenberger, Annette Peters
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.202882

Transcriptome integration analysis and specific diagnosis model construction for Hodgkin's lymphoma, diffuse large B-cell lymphoma, and mantle cell lymphoma
Cited by: 2
Author(s): Wen‐Xing Li, Shao‐Xing Dai, Sanqi An, Tingting Sun, Justin Liu, Jun Wang, Leyna G. Liu, Yang Xiao, Hua Yang, Lixia Fan, Xiaoli Zhang, Wanqin Liao, Hua You, Luca Tamagnone, Fang Liu, Jing‐Fei Huang, Dahai Liu
Software Mentions: 3
Published: over 5 years ago

10.15252/emmm.201607084

<scp>CDK</scp>4 phosphorylation status and a linked gene expression profile predict sensitivity to palbociclib
Cited by: 62
Author(s): Eric Raspé, Katia Coulonval, Jaime Miguel Gomes Pita, Sabine Paternot, Françoise Rothé, Laure Twyffels, Sylvain Brohée, Ligia Craciun, Denis Larsimont, Véronique Kruys, Flavienne Sandras, Isabelle Salmon, Steven Van Laere, Martine Piccart, Michail Ignatiadis, Christos Sotiriou, Pierre P. Roger
Software Mentions: 3
Published: about 9 years ago

10.3389/fimmu.2021.722807

Integrated Profiling Identifies PLOD3 as a Potential Prognostic and Immunotherapy Relevant Biomarker in Colorectal Cancer
Cited by: 12
Author(s): Shi Jun-hong, Meiyu Bao, Weifeng Wang, Xuan Wu, Yueying Li, Chaofen Zhao, Weiwei Liu
Software Mentions: 3
Published: almost 5 years ago

10.3390/ijms20133360

Metabolomic Studies of Tissue Injury in Nonhuman Primates Exposed to Gamma-Radiation
Cited by: 22
Author(s): Amrita K. Cheema, Khyati Y. Mehta, Meena Rajagopal, Stephen Y. Wise, Oluseyi O. Fatanmi, Vijay K. Singh
Software Mentions: 3
Published: about 7 years ago

10.1016/j.agsy.2017.05.009

Mapping regional risks from climate change for rainfed rice cultivation in India
Cited by: 41
Author(s): K. K. Singh, Colin J. McClean, Patrick Büker, Susan Hartley, Jane K. Hill
Software Mentions: 3
Published: almost 9 years ago

10.1002/advs.201800640

MaxMIF: A New Method for Identifying Cancer Driver Genes through Effective Data Integration
Cited by: 24
Author(s): Yingnan Hou, Bo Gao, Guojun Li, Zhengchang Su
Software Mentions: 3
Published: about 8 years ago

10.1136/jmedgenet-2020-107003

Assessing performance of pathogenicity predictors using clinically relevant variant datasets
Cited by: 45
Author(s): Adam C. Gunning, Verity Fryer, James Fasham, Andrew H. Crosby, Sian Ellard, Emma L. Baple, Caroline F. Wright
Software Mentions: 3
Published: almost 6 years ago

10.1136/bmjdrc-2021-002150

Development and validation of a clinical prediction rule for development of diabetic foot ulceration: an analysis of data from five cohort studies
Cited by: 7
Author(s): Francesca M Chappell, Fay Crawford, Margaret Horne, Graham Leese, Angela Martin, David Weller, Andrew J.M. Boulton, Caroline A. Abbott, Matilde Monteiro‐Soares, Aristidis Veves, Richard D Riley
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1008960

Model guided trait-specific co-expression network estimation as a new perspective for identifying molecular interactions and pathways
Cited by: 1
Author(s): Juho A. J. Kontio, Tanja Pyhäjärvi, Mikko J. Sillanpää
Software Mentions: 3
Published: over 5 years ago

10.1002/advs.201900752

Gut Microbiota Changes in Patients with Bipolar Depression
Cited by: 86
Author(s): Shaohua Hu, Ang Li, Tingting Huang, Jianbo Lai, Jingjing Li, M. Elizabeth Sublette, Haifeng Lü, Qing‐Yi Lu, Yanli Du, Zhiying Hu, Chee H. Ng, Hua Zhang, Joan Lu, Tingting Mou, Shengyong Lu, Dandan Wang, Jinfeng Duan, Jianbo Hu, Manli Huang, Ning Wei, Weihua Zhou, Lifang Ruan, Ming D. Li, Yi Xu
Software Mentions: 3
Published: over 7 years ago

10.7150/jca.61068

Prognostic Value of Preoperative Albumin-to-Fibrinogen Ratio in Patients with Bladder Cancer
Cited by: 5
Author(s): Shuai Li, Di Zhang, Song Zeng, Tao Wu, Yicun Wang, He Zhang, Biao Wang, Xiaopeng Hu
Software Mentions: 3
Published: over 5 years ago

10.1155/2021/3212878

Peripheral Blood Cells from Patients with Hodgkin’s and Diffuse Large B Cell Lymphomas May Be a Better Source of Candidate Diagnostic miRNAs Than Circulating miRNAs
Cited by: 0
Author(s): Ewa Paszkiewicz‐Kozik, Agnieszka Paziewska, Maria Kulecka, Michalina Dąbrowska, Anna Kluska, Aneta Bałabas, Magdalena Piątkowska, Filip Ambrożkiewicz, J. Tajer, W. Osiadacz, Joanna Romejko‐Jarosińska, Martyna Kotarska, Natalia Żeber‐Lubecka, Jakub Karczmarski, Lidia Popławska, Michał Mikula, Piotr Rutkowski, Jan Walewski, Jerzy Ostrowski
Software Mentions: 3
Published: over 5 years ago

10.3389/fonc.2021.657531

Genomic Analysis of Glioblastoma Multiforme Reveals a Key Transcription Factor Signature Relevant to Prognosis and the Immune Processes
Cited by: 6
Author(s): Zhen-Hang Li, Yanlei Guan, Guobin Zhang
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0238829

COVID-19 infections and outcomes in a live registry of heart failure patients across an integrated health care system
Cited by: 17
Author(s): César Caraballo, Megan McCullough, Michael Fuery, Fouad Chouairi, Craig Keating, Neal G. Ravindra, Paul E. Miller, Maricar Malinis, Nitu Kashyap, Allen Hsiao, F. Perry Wilson, Jeptha P. Curtis, Matthew Grant, Eric J. Velázquez, Nihar R. Desai, Tariq Ahmad
Software Mentions: 3
Published: almost 6 years ago

10.3390/ani11040938

Assessment of the Behavioural Response of Korean Water Deer (Hydropotes inermis argyropus) to Different Fence Heights
Cited by: 3
Author(s): Hee-Bok Park, Donggul Woo, Tae Young Choi, Sungwon Hong
Software Mentions: 3
Published: over 5 years ago

10.3390/ani10061017

Predicting Productive Performance in Grow-Finisher Pigs Using Birth and Weaning Body Weight
Cited by: 19
Author(s): Jordi Camp Montoro, Edgar García Manzanilla, David Solà-Oriol, Ramón Muns, J. Gasa, Oliver Clear, Julia Adriana Calderón Díaz
Software Mentions: 3
Published: about 6 years ago

10.3389/fvets.2018.00229

Evaluation of the Performance of the IDvet IFN-Gamma Test for Diagnosis of Bovine Tuberculosis in Spain
Cited by: 12
Author(s): María Luisa de la Cruz, Adam J. Branscum, Jesus Nacar, Enrique Pages, Pilar Pozo, Andrés Perez, Anna Grau, José Luis Sáez, Lucía de Juan, Rosa Díaz, Olga Mínguez, Julio Álvarez
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pcbi.1006483

A benchmark driven guide to binding site comparison: An exhaustive evaluation using tailor-made data sets (ProSPECCTs)
Cited by: 41
Author(s): Christiane Ehrt, Tobias Brinkjost, Oliver Koch
Software Mentions: 3
Published: almost 8 years ago

10.3389/fmicb.2019.02635

Intestinal Bacteroides sp. Imbalance Associated With the Occurrence of Childhood Undernutrition in China
Cited by: 8
Author(s): Dongfang Li, Yinhu Li, Wenkui Dai, Huihui Wang, Chuangzhao Qiu, Feng Su, Qian Zhou, Wenjian Wang, Xin Feng, Kaihu Yao, Yanhong Liu, Yonghong Yang, Zhenyu Yang, Ximing Xu, Shuai Cheng Li, Ju-Rong Wei, Ke Zhou
Software Mentions: 3
Published: over 6 years ago

10.3389/fimmu.2019.00071

Scoring System for Tumor-Infiltrating Lymphocytes and Its Prognostic Value for Gastric Cancer
Cited by: 99
Author(s): Da-Chuan Zhang, Wenting He, Chao Wu, Yan Tan, Yao He, Bin Xu, Lüjun Chen, Qing Li, Jingting Jiang
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0245841

Validation of the Preoperative Score to Predict Postoperative Mortality (POSPOM) in Germany
Cited by: 5
Author(s): Yannik C. Layer, Jan Menzenbach, Yonah L. Layer, Andreas Mayr, Tobias Hilbert, Markus Velten, Andreas Hoeft, Maria Wittmann
Software Mentions: 3
Published: over 5 years ago

10.1093/database/baz124

Machine learning approach to literature mining for the genetics of complex diseases
Cited by: 1
Author(s): Jessica Schuster, Michael Superdock, Anthony Agudelo, Paul Stey, Jamés F. Padbury, Indra Neil Sarkar, Alper Uzun
Software Mentions: 2
Published: over 7 years ago

10.3934/publichealth.2021041

Optimal cut-offs of five anthropometric indices and their predictive ability of type 2 diabetes in a nationally representative Kenyan study
Cited by: 3
Author(s): Anthony Muchai Manyara
Software Mentions: 2
Published: over 5 years ago

10.1002/advs.202001978

A Fifteen‐Gene Classifier to Predict Neoadjuvant Chemotherapy Responses in Patients with Stage IB to IIB Squamous Cervical Cancer
Cited by: 7
Author(s): Xun Tian, Xin Wang, Zifeng Cui, Jia Liu, Xiaoyuan Huang, Chao Shi, Min Zhang, Ting Liu, Xiaofang Du, Rui Li, Lei Huang, Danni Gong, Rui Tian, Chen Cao, Jin Park, Zhen Zeng, Guangxin Pan, Meng Xia, Hongfeng Zhang, Baoming Luo, Yonghui Xie, Xiaoming Li, Tianye Li, Jun Wu, Qinghua Zhang, Gang Chen, Zheng Hu
Software Mentions: 2
Published: over 5 years ago

10.1002/advs.202001936

Alterations of the Human Gut Microbiome in Chronic Kidney Disease
Cited by: 74
Author(s): Zhigang Ren, Yijun Fan, Ang Li, Quanquan Shen, Jian Wu, Lingyan Ren, Haifeng Lü, Shuzhe Ding, Hongyan Ren, Chao Liu, Wenli Liu, Dan Gao, Zhongwen Wang, Shiyuan Guo, Wei Ge, Zhangsuo Liu, Zujiang Yu, Lanjuan Li
Software Mentions: 2
Published: almost 6 years ago

10.18632/aging.101375

Genes associated with Type 2 Diabetes and vascular complications
Cited by: 36
Author(s): Alberto Montesanto, Anna Rita Bonfigli, Paolina Crocco, Paolo Garagnani, María De Luca, Massimo Boemi, Elena Marasco, Chiara Pirazzini, Cristina Giuliani, Claudio Franceschi, Giuseppe Passarino, Roberto Testa, Fabiola Olivieri, Giuseppina Rose
Software Mentions: 2
Published: over 8 years ago

10.18632/aging.102634

CeRNA regulatory network-based analysis to study the roles of noncoding RNAs in the pathogenesis of intrahepatic cholangiocellular carcinoma
Cited by: 24
Author(s): Weiyu Xu, Si Yu, Jianping Xiong, Junyu Long, Yongchang Zheng, Xinting Sang
Software Mentions: 2
Published: over 6 years ago

10.18632/aging.101044

Mutational load of the mitochondrial genome predicts pathological features and biochemical recurrence in prostate cancer
Cited by: 27
Author(s): Anton M.F. Kalsbeek, Eva Chan, Judith Grogan, Desiree C. Petersen, Weerachai Jaratlerdsiri, Ruta Gupta, Ruth J. Lyons, Anne‐Maree Haynes, Lisa G. Horvath, James G. Kench, Phillip D. Stricker, Vanessa M. Hayes
Software Mentions: 2
Published: almost 10 years ago

10.1002/acn3.50965

Transmembrane protease serine 5: a novel Schwann cell plasma marker for CMT1A
Cited by: 24
Author(s): Hongge Wang, Matt Davison, Kathryn Wang, Tai-he Xia, Martin Kramer, Katherine M. Call, Jun Luo, Xingyao Wu, Riccardo Zuccarino, Chelsea Bacon, Yunhong Bai, John J. Moran, Laurie Gutmann, Shawna Feely, Tiffany Grider, Alexander M. Rossor, John Svaren, Michael E. Shy
Software Mentions: 2
Published: over 6 years ago

10.3390/antiox9080649

Clinical Utility of Plasma Lipid Peroxidation Biomarkers in Alzheimer’s Disease Differential Diagnosis
Cited by: 8
Author(s): Carmen Peña-Bautista, Lourdes Rojas Álvarez, Thierry Durand, Claire Vigor, Ana Cuevas, Miguel Baquero, Máximo Vento, David Hervás, Consuelo Cháfer-Pericás
Software Mentions: 2
Published: about 6 years ago

10.1007/s11657-020-00867-5

Establishment and verification of an osteoporosis risk model in patients with rheumatoid arthritis: a valuable new model
Cited by: 4
Author(s): Xiaoling Yan, Zhenhong Xu, Shilin Li, Lisheng Yan, Guorong Lyu, Zecheng Wang
Software Mentions: 2
Published: over 5 years ago

10.5935/abc.20180220

Left Ventricular Regional Wall Motion Abnormality is a Strong Predictor of Cardiotoxicity in Breast Cancer Patients Undergoing Chemotherapy
Cited by: 8
Author(s): Márcio Vinícius Lins Barros, Ariane Vieira Scarlatelli Macedo, Sebastian Imre Sarvari, Monica Hermont Faleiros, Patricia Tavares Felipe, José Luiz Padilha Silva, Thor Edvardsen
Software Mentions: 2
Published: over 8 years ago

10.1186/s13075-021-02625-5

Integrative analysis of genome-wide DNA methylation and single-nucleotide polymorphism identified ACSM5 as a suppressor of lumbar ligamentum flavum hypertrophy
Cited by: 6
Author(s): Yanlin Cao, Ye-Nan Zhan, Sujun Qiu, Zhong Chen, Kaiqin Gong, Songjia Ni, Yang Duan
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12871-018-0646-x

Prediction of postoperative mortality in elderly patient with hip fractures: a single-centre, retrospective cohort study
Cited by: 18
Author(s): Romain Niessen, Benoît Bihin, Maximilien Gourdin, Jean Cyr Yombi, Olivier Cornu, Patrice Forget
Software Mentions: 2
Published: over 7 years ago

10.1186/s12859-019-2853-y

Capturing the differences between humoral immunity in the normal and tumor environments from repertoire-seq of B-cell receptors using supervised machine learning
Cited by: 23
Author(s): Hiroki Konishi, Daisuke Komura, Hiroto Katoh, Saoko Atsumi, Hirotomo Koda, Asami Yamamoto, Yasuyuki Seto, Masashi Fukayama, Rui Yamaguchi, Seiya Imoto, Shumpei Ishikawa
Software Mentions: 2
Published: about 7 years ago

10.1186/s12859-020-03574-7

PPAI: a web server for predicting protein-aptamer interactions
Cited by: 9
Author(s): Jianwei Li, Xiaoyu Ma, Xichuan Li, Jun Gu
Software Mentions: 2
Published: about 6 years ago

10.1186/1471-2105-13-272

Gene expression anti-profiles as a basis for accurate universal cancer signatures
Cited by: 43
Author(s): Héctor Corrada Bravo, Vasyl Pihur, Matthew N. McCall, Rafael A. Irizarry, Jeffrey T. Leek
Software Mentions: 2
Published: almost 14 years ago

10.1186/s12859-021-04345-8

The regulatory pattern of target gene expression by aberrant enhancer methylation in glioblastoma
Cited by: 4
Author(s): Xiaoxiao Zhao, Jianghuai Ji, Wang Shi-jia, Rendong Wang, Qiuhong Yu, Dongguo Li
Software Mentions: 2
Published: almost 5 years ago

10.1186/1471-2105-15-39

Statistical analysis of differential gene expression relative to a fold change threshold on NanoString data of mouse odorant receptor genes
Cited by: 26
Author(s): Evelien Vaes, Mona Khan, Peter Mombaerts
Software Mentions: 2
Published: over 12 years ago

10.1186/1471-2105-13-331

Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study
Cited by: 110
Author(s): Lei Sun, Zhihua Zhang, Timothy L. Bailey, Andrew C. Perkins, Michael R. Tallack, Zhao‐Xu Xu, Hui Liu
Software Mentions: 2
Published: over 13 years ago

10.1186/2046-1682-5-7

Arbitrary protein−protein docking targets biologically relevant interfaces
Cited by: 37
Author(s): Juliette Martin, Richard Lavery
Software Mentions: 2
Published: over 14 years ago

10.1186/s12885-021-08466-4

A nomogram prediction model for lymph node metastasis in endometrial cancer patients
Cited by: 14
Author(s): Zhong Lin Wang, Shuo Zhang, Yihui Ma, Wenhui Li, Jing Tian, Ting Liu
Software Mentions: 2
Published: about 5 years ago

10.1186/s12885-020-6640-y

miRNA expression profiling of hereditary breast tumors from BRCA1- and BRCA2-germline mutation carriers in Brazil
Cited by: 10
Author(s): Danielle Pessôa‐Pereira, Adriane Feijó Evangelista, Rhafaela Lima Causin, René Aloísio da Costa Vieira, Lucas Faria Abrahão-Machado, Iara Viana Vidigal Santana, Vinícius Duval da Silva, Karen Cristina Borba Souza, Renato José de Oliveira-Silva, Gabriela Fernandes, Rui Manuel Reis, Edenir Inêz Palmero, Márcia Maria Chiquitelli Marques
Software Mentions: 2
Published: over 6 years ago

10.1186/s12872-018-0766-8

Screening key genes for abdominal aortic aneurysm based on gene expression omnibus dataset
Cited by: 9
Author(s): Li Wan, Jingyong Huang, Hong-Bo Ni, Yu Guo
Software Mentions: 2
Published: over 8 years ago

10.1186/s12872-021-02146-8

Identification of candidate biomarkers and therapeutic agents for heart failure by bioinformatics analysis
Cited by: 19
Author(s): Vijayakrishna Kolur, Basavaraj Vastrad, Chanabasayya Vastrad, Shivakumar Kotturshetti, Anandkumar Tengli
Software Mentions: 2
Published: about 5 years ago

10.1186/s12873-021-00466-8

Development and validation of a scoring system for mortality prediction and application of standardized W statistics to assess the performance of emergency departments
Cited by: 5
Author(s): Jin Woo Jeong, Sung Woo Lee, Won Young Kim, Kap Su Han, Su Jin Kim, Hyun−Goo Kang
Software Mentions: 2
Published: about 5 years ago

10.1186/1472-6823-13-47

Insulin resistance (HOMA-IR) cut-off values and the metabolic syndrome in a general adult population: effect of gender and age: EPIRCE cross-sectional study
Cited by: 374
Author(s): Pilar Díz, Alfonso Otero-González, María Xosé Rodríguez‐Álvarez, Francisco Gudé, Fernando García, Angel de Francisco, Arturo Gonzalez-Quintela
Software Mentions: 2
Published: almost 13 years ago

10.1186/s12902-021-00718-5

Investigation of candidate genes and mechanisms underlying obesity associated type 2 diabetes mellitus using bioinformatics analysis and screening of small drug molecules
Cited by: 12
Author(s): G Prashanth, Basavaraj Vastrad, Anandkumar Tengli, Chanabasayya Vastrad, Iranna Kotturshetti
Software Mentions: 2
Published: over 5 years ago

10.1186/s12876-021-01690-z

Selected nasogastric lavage in patients with nonvariceal upper gastrointestinal bleeding
Cited by: 4
Author(s): Eun Jeong Gong, Li-Chang Hsing, Hyun Ook Seo, Myung-Ji Seo, Baek Gyu Jun, Jong Kyu Park, Sang Jin Lee, Koon Hee Han, Young Don Kim, Woo Jin Jeong, Gab Jin Cheon, Min-Ju Kim
Software Mentions: 2
Published: over 5 years ago

10.1186/s12876-018-0854-3

Risk factors for post-ERCP cholecystitis: a single-center retrospective study
Cited by: 20
Author(s): Jun Cao, Chunyan Peng, Xiwei Ding, Yonghua Shen, Han Wu, Rongqin Zheng, Lei Wang, Xiaoping Zou
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12877-018-0718-2

Frail-VIG index: a concise frailty evaluation tool for rapid geriatric assessment
Cited by: 54
Author(s): Jordi Amblàs-Novellas, Joan Carles Martori, Joan Espaulella, Ramón Oller, Núria Molist-Brunet, Marco Inzitari, Román Romero-Ortuño
Software Mentions: 2
Published: over 8 years ago

10.1186/s12913-018-3761-y

To what degree can variations in readmission rates be explained on the level of the hospital? a multilevel study using a large Dutch database.
Cited by: 6
Author(s): Karin Hekkert, Rudolf B Kool, Ester A. Rake, Sezgin Cihangir, Ine Borghans, Femke Atsma, Gert P. Westert
Software Mentions: 2
Published: over 7 years ago

10.1186/s12913-019-4640-x

Development and validation of a predictive model for American Society of Anesthesiologists Physical Status
Cited by: 12
Author(s): Seshadri C. Mudumbai, Suzann Pershing, Thomas Bowe, Robin N. Kamal, Erika D. Sears, Andrea K. Finlay, Dan Eisenberg, Mary T. Hawn, Yingjie Weng, Amber W. Trickey, Edward R. Mariano, Alex H. S. Harris
Software Mentions: 2
Published: over 6 years ago

10.1186/s12879-017-2309-9

Development and validation of a prognostic score during tuberculosis treatment
Cited by: 19
Author(s): E.W. Pefura-Yone, Adamou Dodo Balkissou, V. Poka-Mayap, Hadja Koté Fatime-Abaicho, P. Enono-Edende, André Pascal Kengne
Software Mentions: 2
Published: over 9 years ago

10.1186/1471-2334-13-77

Clinical and laboratory features that discriminate dengue from other febrile illnesses: a diagnostic accuracy study in Rio de Janeiro, Brazil
Cited by: 57
Author(s): Regina Paiva Daumas, Sônia Regina Lambert Passos, Raquel de Vasconcellos Carvalhaes de Oliveira, Rita Maria Ribeiro Nogueira, Ingebourg Georg, Keyla Belízia Feldman Marzochi, Patrícia Brasil
Software Mentions: 2
Published: over 13 years ago

10.1186/s12879-020-05313-y

The sputum microbiome associated with different sub-types of AECOPD in a Chinese cohort
Cited by: 12
Author(s): Juan Wang, Jianmin Chai, Sun L, Jiangchao Zhao, Chun Chang
Software Mentions: 2
Published: about 6 years ago

10.1186/s12879-016-1576-1

Urine colorimetry to detect Low rifampin exposure during tuberculosis therapy: a proof-of-concept study
Cited by: 12
Author(s): Isaac Zentner, Hans P. Schlecht, Lorna Khensouvann, Neo Tamuhla, Michele A. Kutzler, Vijay Ivaturi, Jotam G. Pasipanodya, Tawanda Gumbo, Charles A. Peloquin, Gregory P. Bisson, Christopher Vinnard
Software Mentions: 2
Published: about 10 years ago

10.1186/1741-7015-12-92

Predictive spatial risk model of poliovirus to aid prioritization and hasten eradication in Nigeria
Cited by: 29
Author(s): Alexander Upfill‐Brown, Hil Lyons, Muhammad Ali Pate, Faisal Shuaib, Shahzad Baig, Hao Hu, Philip A. Eckhoff, Guillaume Chabot‐Couture
Software Mentions: 2
Published: about 12 years ago

10.1186/s12916-021-02034-0

Metagenome-wide association study of gut microbiome revealed potential microbial marker set for diagnosis of pediatric myasthenia gravis
Cited by: 17
Author(s): Peng Liu, Yiqi Jiang, Shanshan Gu, Yinping Xue, Hongxia Yang, Yongzhao Li, Yaxuan Wang, Congya Yan, Peng Jia, Lin X, Guoyan Qi
Software Mentions: 2
Published: about 5 years ago

10.1186/s12916-021-02116-z

Activated gut-homing CD8+ T cells for coeliac disease diagnosis on a gluten-free diet
Cited by: 3
Author(s): Fernando Fernández‐Bañares, Natalia López-Palacios, María Corzo, Beatriz Arau, Mercedes Rubio, Marta Fernández-Prieto, Eva Tristán, Mar Pujals, Sergio Farrais, Saúl Horta, J. Hernández, Marta Gómez-Perosanz, Pedro A. Reche, María Esteve, Concepción Núñez
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12881-015-0176-z

Assessment of the predictive accuracy of five in silico prediction tools, alone or in combination, and two metaservers to classify long QT syndrome gene mutations
Cited by: 73
Author(s): Ivone Leong, Alexander Stuckey, Daniel Lai, Jonathan R. Skinner, Donald R. Love
Software Mentions: 2
Published: over 11 years ago

10.1186/s12920-021-00888-0

Novel prognostic genes and subclasses of acute myeloid leukemia revealed by survival analysis of gene expression data
Cited by: 4
Author(s): Yanli Lai, Guifang Ouyang, Lixia Sheng, Yanli Zhang, Binbin Lai, Miao Zhou
Software Mentions: 2
Published: over 5 years ago

10.1186/s12880-020-00458-3

Discrimination of benign from malignant breast lesions in dense breasts with model-based analysis of regions-of-interest using directional diffusion-weighted images
Cited by: 5
Author(s): Alan Penn, Milica Medved, Vandana Dialani, Etta D. Pisano, Elodia B. Cole, David C. Brousseau, Gregory S. Karczmar, Guimin Gao, Barry D. Reich, Hiroyuki Abé
Software Mentions: 2
Published: about 6 years ago

10.1186/s12911-021-01576-w

Predicting clinical outcomes among hospitalized COVID-19 patients using both local and published models
Cited by: 12
Author(s): William L. Galanter, Jorge Mario Rodríguez-Fernández, Kevin Chow, Samuel Harford, Karl M. Kochendorfer, Maryam Pishgar, Julian Theis, John Zulueta, Houshang Darabi
Software Mentions: 2
Published: about 5 years ago

10.1186/s12911-021-01566-y

Patient similarity analytics for explainable clinical risk prediction
Cited by: 5
Author(s): Hao Sen Andrew Fang, Ngiap Chuan Tan, Wei Ying Tan, Ronald Wihal Oei, Mong Li Lee, Wynne Hsu
Software Mentions: 2
Published: about 5 years ago

10.1186/s12874-019-0660-9

The triple variable index combines information generated over time from common monitoring variables to identify patients expressing distinct patterns of intraoperative physiology
Cited by: 0
Author(s): Michael P. Schnetz, Harry Hochheiser, David Danks, Douglas Landsittel, Keith M. Vogt, James W. Ibinson, S Whitehurst, Sean McDermott, Melissa Giraldo Duque, A. Murat Kaynar
Software Mentions: 2
Published: over 7 years ago

10.1186/s12874-020-00957-5

Using estimated probability of pre-diagnosis behavior as a predictor of cancer survival time: an example in esophageal cancer
Cited by: 2
Author(s): Paul Fahey, Andrew Page, Graham N. Stone, Thomas Astell–Burt
Software Mentions: 2
Published: over 6 years ago

10.1186/s12882-019-1564-y

Comparison between three different equations for the estimation of glomerular filtration rate in predicting mortality after coronary artery bypass
Cited by: 7
Author(s): Sandro Gelsomino, Massimo Bonacchi, Fabiana Lucà, Fabio Barili, Stefano Del Pace, Orlando Parise, Dan Johnson, Michele Massimo Gulizia
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12882-017-0465-1

Latent variable modeling improves AKI risk factor identification and AKI prediction compared to traditional methods
Cited by: 5
Author(s): Loren E. Smith, Derek K. Smith, Jeffrey D. Blume, Edward D. Siew, Frederic T. Billings
Software Mentions: 2
Published: over 9 years ago

10.1186/s12882-019-1237-x

Identifying on admission patients likely to develop acute kidney injury in hospital
Cited by: 17
Author(s): Anastasios Argyropoulos, Stuart Townley, Paul M. Upton, S. J. Dickinson, Adam Pollard
Software Mentions: 2
Published: over 7 years ago

10.1186/s12883-021-02397-0

Screening for differentially expressed circRNAs in ischemic stroke by RNA sequencing
Cited by: 8
Author(s): Dang Wei, Jian Chen, Xiaopu Chen, Shaoyan Wu, Zhaolin Chen, Yinting Huang, Zibin Shen, Wenzhen He
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12887-020-02480-4

Identification of pathogenic genes and transcription factors in respiratory syncytial virus
Cited by: 5
Author(s): Lei Li, Yong An Ni, Zhenfeng Song, Zhi Ye, Fang Wang
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-244X-14-121

To what extent does the anxiety scale of the Four-Dimensional Symptom Questionnaire (4DSQ) detect specific types of anxiety disorder in primary care? A psychometric study
Cited by: 26
Author(s): Berend Terluin, D.B. Oosterbaan, Evelien P. M. Brouwers, Annemieke van Straten, Peter M. van de Ven, Wendy Langerak, Harm van Marwijk
Software Mentions: 2
Published: over 12 years ago

10.1186/s12888-016-0831-8

Investigation of the clinical utility of the hypomania checklist 32 (HCL-32) for the screening of bipolar disorders in the non-clinical adult population
Cited by: 14
Author(s): Kounseok Lee, Hyeji Oh, Eun‐Ho Lee, Joo Hyun Kim, Ji-Hae Kim, Kyung Sue Hong
Software Mentions: 2
Published: over 10 years ago

10.1186/s12890-020-1136-8

Contribution of social factors to readmissions within 30 days after hospitalization for COPD exacerbation
Cited by: 12
Author(s): Tadahiro Goto, Kazuki Yoshida, Mohammad Kamal Faridi, Carlos A. Camargo, Kohei Hasegawa
Software Mentions: 2
Published: over 6 years ago

10.1186/s13104-016-2028-0

The clinical utility curve: a proposal to improve the translation of information provided by prediction models to clinicians
Cited by: 4
Author(s): Duncan J. Campbell
Software Mentions: 2
Published: over 10 years ago

10.1186/s12918-017-0524-z

Meta-analysis of human gene expression in response to Mycobacterium tuberculosis infection reveals potential therapeutic targets
Cited by: 45
Author(s): Zhang Wang, Seda Arat, Michal Magid-Slav, James R. Brown
Software Mentions: 2
Published: over 8 years ago

Projects: cran: pROC

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Science Score: 95/100

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Papers Mentioning pROC 1,740