Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: nloptr

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/nloptr

R Interface to NLopt
24 versions
Latest release: over 2 years ago
147 dependent packages
403,485 downloads last month

Papers Mentioning nloptr 21

10.1186/s12859-017-1538-7
stpm: an R package for stochastic process model
Cited by: 4
Author(s): Ilya Y. Zhbannikov, Konstantin G. Arbeev, Igor Akushevich, Eric Stallard, Anatoliy I. Yashin
Software Mentions: 9
Published: almost 8 years ago
10.1038/s42003-021-02146-6
NEBULA is a fast negative binomial mixed model for differential or co-expression analysis of large-scale multi-subject single-cell data
Cited by: 38
Author(s): Liyun He, José Dávila-Velderrain, Tomokazu Sumida, David A. Hafler, M Kellis, Alexander M. Kulminski
Software Mentions: 8
Published: over 3 years ago
10.1093/cid/ciz060
Global Review of the Age Distribution of Rotavirus Disease in Children Aged <5 Years Before the Introduction of Rotavirus Vaccination
Cited by: 35
Author(s): Mateusz Hasso-Agopsowicz, Chandresh N Ladva, Benjamin A. Lopman, Colin Sanderson, Adam L. Cohen, Jacqueline E. Tate, Ximena Riveros, Ana María Henao-Restrepo, Andrew Clark, Míriam Alkorta, Christina Atchison, Salem Banajeh, Sylvia Becker‐Dreps, Mohammed Benhafid, Nita Bhandari, Ladaporn Bodhidatta, Tessa Braeckman, Josephine Bwogi, Rita de Cássia Compagnoli Carmona, Gustavo Cilla, Ingrid L. Contreras-Roldan, Barbara S. Coulson, Nigel A. Cunliffe, Ron Dagan, N. Givon, Juan Ignacio Degiuseppe, Shaveta Dhiman, Zhang Dian, Jenna Diaz, Shubha Ranjan Dutta, Triveni Krishnan, Byomkesh Manna, Stephanie Fletcher-Lartey, Chuanxi Fu, D. Gendrel, Khalifa Sifaw Ghenghesh, G. Gonzalez Mago, Simona De Grazia, Keith Grimwood, Michelle Groome, Md. Ahshanul Haque, Ulrich Heininger, Eric R. Houpt, Miren Iturriza‐Gómara, Daniel Hungerford, Claudia Jarquín, John P. McCracken, I. L. Contreras, Celia Cordón-Rosales, Petra Kaiser-Labusch, Gagandeep Kang, Sumit Kar, Nicholas M. Kiulia, Karen L. Kotloff, Renat Latipov, Alexandre da Costa Linhares, Mathie Lorrot, Marcelo Gastón Mandile, Christine Mast, M. A. Mathew, F. Matinon-Torres, Jelle Matthijnssens, Z. Mladenova, Marina Monini, Milagrosa Montes, Ainara Arana, Mohammad Motamedifar, Akram Najafi, Tell Nelson, James Nokes, Francine Ntoumi, Kei Numazaki, Ciara E. O’Reilly, Theresa J. Ochoa, Nicola Page, Anne‐Laure Page, Céline Langendorf, Alexander T. Podkolzin, Caroline Quach, Maria Lúcia Rácz, Alexis de Rougemont, Guillermo M. Ruíz-Palacios, Samir K. Saha, Samir K. Saha, Syed Moinuddin Satter, L. Soares, Subijanto Marto Sudarmo, Katsumi Shigemura, Toshihiko Shirakawa, Alpha Fardah Athiyyah, Beckie Nnenna Tagbo, Phillip I. Tarr, Eileen J. Klein, Donna M. Denno, Ann Turner, Ezeonwu Bertilla Uzoma, R. R. Vatosoa, Ernest Apondi Wandera, Mary E. Wikswo, Daniel C. Payne, Huang Yhu-Chering, Tetsushi Yoshikawa, Ken Sugata, Qianqian Yuan, Liang LiYing, Khalequ Zaman, Xiaofang Zhou, S. X. Zhang, Wei Xu, Fatima Serhan, Tomoka Nakamura, Sébastien Antoni, Mary Agócs, Jillian Murray, Thomas Cherian, Jason M. Mwenda, Goitom Weldegebriel, Joseph Nsiari-Muzeyi Biey, Dah Cheikh, Nadia Teleb, Hossam Abdel Rahman, Hinda Ahmed, Danni Daniels, Dovile Videbaek, Annemarie Wasley, Simarjit Singh, Lúcia de Oliveira, Gloria Rey-Benito, N. Jennifer Sanwogou, Jayantha Liyanage, Pushpa Ranjan Wijesinghe, Batmunkh Nyambat, Varja Grabovac, Kimberley Fox, Fem Julia Paladin, Nicholas Henschke
Software Mentions: 8
Published: almost 6 years ago
10.1155/2018/3719703
Quantitative Assessment of the Physiological Parameters Influencing QT Interval Response to Medication: Application of Computational Intelligence Tools
Cited by: 2
Author(s): Sebastian Polak, Barbara Wiśniowska, Aleksander Mendyk, Adam Pacławski, Jakub Szlęk
Software Mentions: 8
Published: almost 7 years ago
10.1093/ije/dyz028
Update on the global epidemiology of intussusception: a systematic review of incidence rates, age distributions and case-fatality ratios among children aged <5 years, before the introduction of rotavirus vaccination
Cited by: 36
Author(s): Andrew Clark, Mateusz Hasso-Agopsowicz, Matthew W Kraus, Lisa Stockdale, Colin Sanderson, Umesh D. Parashar, Jacqueline E. Tate
Software Mentions: 6
Published: almost 6 years ago
10.1186/s12859-018-2450-5
Optimum contribution selection for animal breeding and conservation: the R package optiSel
Cited by: 44
Author(s): Robin Wellmann
Software Mentions: 6
Published: almost 6 years ago
10.1371/journal.pone.0249857
Multistage allocation problem for Mexican pension funds
Cited by: 1
Author(s): Andrés García-Medina, Norberto A. Hernández-Leandro, Graciela González-Farı́as, Nelson Muriel
Software Mentions: 6
Published: over 3 years ago
10.3390/e23010107
Distance-Based Estimation Methods for Models for Discrete and Mixed-Scale Data
Cited by: 1
Author(s): Elisavet M. Sofikitou, Ray Liu, Huipei Wang, Marianthi Markatou
Software Mentions: 6
Published: almost 4 years ago
10.1371/journal.pone.0150568
Within-Host Models of High and Low Pathogenic Influenza Virus Infections: The Role of Macrophages
Cited by: 32
Author(s): Kasia A. Pawelek, Daniel Dor, Cristian Salmeron, Andreas Handel
Software Mentions: 4
Published: almost 9 years ago
10.1002/ece3.1799
Specialists in ancient trees are more affected by climate than generalists
Cited by: 26
Author(s): Leonie A. Gough, Anne Sverdrup‐Thygeson, Per Milberg, Hanne Eik Pilskog, Nicklas Jansson, Mats Jonsell, Tone Birkemoe
Software Mentions: 4
Published: about 9 years ago
10.1038/s41598-020-75225-z
Sequential laxative-probiotic usage for treatment of irritable bowel syndrome: a novel method inspired by mathematical modelling of the microbiome
Cited by: 3
Author(s): Ming Li, Ri Xu, Yanqing Li
Software Mentions: 4
Published: about 4 years ago
10.1186/s12711-020-00596-w
Statistical analysis in support of maintaining a healthy traditional Siamese cat population
Cited by: 4
Author(s): Arthur M. A. Pistorius, Ineke Blokker
Software Mentions: 3
Published: almost 4 years ago
10.3389/fpls.2018.01746
Dynamic Modeling of Carbon Metabolism During the Dormant Period Accurately Predicts the Changes in Frost Hardiness in Walnut Trees Juglans regia L.
Cited by: 22
Author(s): Guillaume Charrier, André Lacointe, Thierry Améglio
Software Mentions: 3
Published: about 6 years ago
10.1093/molbev/msaa318
A Spatially Explicit Model of Stabilizing Selection for Improving Phylogenetic Inference
Cited by: 1
Author(s): Jeremy M. Beaulieu, Brian C. O’Meara, Michael A. Gilchrist
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pcbi.1006505
Exploring the impact of inoculum dose on host immunity and morbidity to inform model-based vaccine design
Cited by: 29
Author(s): Andreas Handel, Yan Li, Brian McKay, Kasia A. Pawelek, Veronika I. Zarnitsyna, Rustom Antia
Software Mentions: 2
Published: about 6 years ago
10.1007/s10459-019-09928-y
Institutional strategies related to test-taking behavior in low stakes assessment
Cited by: 8
Author(s): Katrin Schüttpelz-Brauns, Martin Hecht, Katinka Hardt, Yassin Karay, Michaela Zupanic, Juliane E. Kämmer
Software Mentions: 2
Published: about 5 years ago
10.2807/1560-7917.ES.2021.26.27.2100570
Predicted dominance of variant Delta of SARS-CoV-2 before Tokyo Olympic Games, Japan, July 2021
Cited by: 61
Author(s): Kimihito Ito, Chayada Piantham, Hiroshi Nishiura
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-017-17215-2
Impact of model calibration on cost-effectiveness analysis of cervical cancer prevention
Cited by: 8
Author(s): David Moriña, Sílvia de Sanjosé, Mireia Díaz
Software Mentions: 1
Published: about 7 years ago
10.3390/e21101015
An Entropy-Based Machine Learning Algorithm for Combining Macroeconomic Forecasts
Cited by: 5
Author(s): Carles Bretó, Priscila Espinosa, Penélope Hernández, José M. Pavía
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-021-94903-0
Modeling photosynthetic resource allocation connects physiology with evolutionary environments
Cited by: 5
Author(s): Esther M. Sundermann, Martin J. Lercher, David Heckmann
Software Mentions: 1
Published: over 3 years ago
10.1007/s11538-018-0529-9
Mutation and Selection in Bacteria: Modelling and Calibration
Cited by: 1
Author(s): Christopher D. Bayliss, Christopher J. Fallaize, R. Howitt, Michael V. Tretyakov
Software Mentions: 1
Published: about 6 years ago