Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: nlme
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/nlme
Linear and Nonlinear Mixed Effects Models
147 versions
Latest release: over 1 year ago
431 dependent packages
137,096 downloads last month
Papers Mentioning nlme 3,265
10.1038/s41598-018-20655-z
Free-living greylag geese adjust their heart rates and body core temperatures to season and reproductive contextCited by: 20
Author(s): Claudia A. F. Wascher, Kurt Kotrschal, Walter Arnold
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-018-20513-y
KIBRA is associated with accelerated cognitive decline and hippocampal atrophy in APOE ε4-positive cognitively normal adults with high Aβ-amyloid burdenCited by: 30
Author(s): Tenielle Porter, Samantha Burnham, Vincent Doré, Greg Savage, Pierrick Bourgeat, Kimberly Begemann, Lidija Milicic, David Ames, Ashley I. Bush, Paul Maruff, Colin L. Masters, Christopher C. Rowe, Stephanie R. Rainey-Smith, Ralph N. Martins, David Groth, Giuseppe Verdile, Victor L. Villemagne, Simon M. Laws
Software Mentions: 1
Published: almost 7 years ago
10.3390/ijerph14121606
Ovsiankina’s Great Relief: How Supplemental Work during the Weekend May Contribute to Recovery in the Face of Unfinished TasksCited by: 15
Author(s): Oliver Weigelt, Christine J. Syrek
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0146855
Effects of Protection and Sediment Stress on Coral Reefs in Saint LuciaCited by: 24
Author(s): Chantale Bégin, C.K. Schelten, Maggy M. Nugues, Julie P. Hawkins, Callum M. Roberts, Isabelle M. Côté
Software Mentions: 1
Published: almost 9 years ago
10.3945/ajcn.113.068791
Life-course determinants of bone mass in young adults from a transitional rural community in India: the Andhra Pradesh Children and Parents Study (APCAPS),,Cited by: 13
Author(s): Mika Matsuzaki, Hannah Kuper, Bharati Kulkarni, Radhakrishna Kv, Heli Viljakainen, Amy E Taylor, Ruth Sullivan, Liza Bowen, Jonathan H Tobias, George B. Ploubidis, Jonathan C. K. Wells, Dorairaj Prabhakaran, George Davey Smith, Shah Ebrahim, Yoav Ben-Shlomo, Sanjay Kinra
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0138816
Cost-Effectiveness of Financial Incentives to Promote Adherence to Depot Antipsychotic Medication: Economic Evaluation of a Cluster-Randomised Controlled TrialCited by: 15
Author(s): Catherine Henderson, Martín Knapp, Ksenija Yeeles, Stephen Bremner, Sandra Eldridge, Anthony S. David, Nicola O’Connell, Tom Burns, Stefan Priebe
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0140384
Convergent Evolution towards High Net Carbon Gain Efficiency Contributes to the Shade Tolerance of Palms (Arecaceae)Cited by: 9
Author(s): Ren-Yi Ma, Jiao‐Lin Zhang, Molly A. Cavaleri, Frank J. Sterck, Joeri S. Strijk, Kun‐Fang Cao
Software Mentions: 1
Published: about 9 years ago
10.1007/s00442-016-3698-y
Grassland structural heterogeneity in a savanna is driven more by productivity differences than by consumption differences between lawn and bunch grassesCited by: 12
Author(s): Michiel P. Veldhuis, Heleen F. Fakkert, Matty P. Berg, Han Olff
Software Mentions: 1
Published: over 8 years ago
10.7717/peerj.6268
Individual and flock immunity responses of naïve ducks on smallholder farms after vaccination with H5N1 Avian Influenza vaccine: a study in a province of the Mekong Delta, VietnamCited by: 4
Author(s): Hoa Thi Thanh Huynh, Liem Tan Truong, Tongkorn Meeyam, Hien-Thanh Le, Veerasak Punyapornwithaya
Software Mentions: 1
Published: almost 6 years ago
10.1097/j.pain.0000000000001907
Neural correlates of conditioned pain responses in fibromyalgia subjects indicate preferential formation of new pain associations rather than extinction of irrelevant onesCited by: 19
Author(s): Angelica Sandström, Isabel Ellerbrock, Jeanette Tour, Diana Kadetoff, Karin B. Jensen, Eva Kosek
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2018.02860
Modulation of Litter Decomposition by the Soil Microbial Food Web Under Influence of Land Use ChangeCited by: 19
Author(s): Amber Heijboer, P.C. de Ruiter, Paul L. E. Bodelier, George A. Kowalchuk
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12891-020-03408-w
Deformity progression in congenital posteromedial bowing of the tibia: a report of 44 casesCited by: 4
Author(s): Giovanni Luigi Di Gennaro, Giovanni Gallone, Edgar Alejandro Martinez Vazquez, Leonardo Marchesini Reggiani, Costantina Racano, Eleonora Olivotto, Stefano Stilli, Giovanni Trisolino
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0072862
New Insights into Non-Avian Dinosaur Reproduction and Their Evolutionary and Ecological Implications: Linking Fossil Evidence to Allometries of Extant Close RelativesCited by: 24
Author(s): Jan Werner, Eva Maria Griebeler
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0163213
Energy Reserves, Information Need and a Pinch of Personality Determine Decision-Making on Route in Partially Migratory Blue TitsCited by: 6
Author(s): Anna Nilsson, Jan Nilsson, Claudia Mettke-Hofmann
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0081039
Yield and Economic Performance of Organic and Conventional Cotton-Based Farming Systems – Results from a Field Trial in IndiaCited by: 69
Author(s): D. Lynn Forster, Christian Andrés, Rajeev Verma, Christine Zundel, Monika Messmer, Paul Mäder
Software Mentions: 1
Published: almost 11 years ago
10.1007/s11060-019-03240-w
Multidimensional assessment of fatigue in patients with brain metastases before and after Gamma Knife radiosurgeryCited by: 4
Author(s): Eline Verhaak, Wietske C. M. Schimmel, Margriet M. Sitskoorn, Marjan Bakker, Patrick Hanssens, Karin Gehring
Software Mentions: 1
Published: over 5 years ago
10.1155/2013/687519
Epigenetic Markers of Renal Function in African AmericansCited by: 7
Author(s): Samantha Bomotti, Jennifer A. Smith, Alicia Zagel, Jacquelyn Y. Taylor, Stephen T. Turner, Sharon L.R. Kardia
Software Mentions: 1
Published: almost 12 years ago
10.1002/brb3.114
Attention-dependent modulation of neural activity in primary sensorimotor cortexCited by: 8
Author(s): Annette Milnik, Isabella Nowak, Notger G. Müller
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0026485
Undirected (Solitary) Birdsong in Female and Male Blue-Capped Cordon-Bleus (Uraeginthus cyanocephalus) and Its Endocrine CorrelatesCited by: 25
Author(s): Nicole Geberzahn, Manfred Gahr
Software Mentions: 1
Published: about 13 years ago
10.1038/s41598-018-25631-1
Integrated analysis highlights APC11 protein expression as a likely new independent predictive marker for colorectal cancerCited by: 12
Author(s): Youenn Drouet, Isabelle Treilleux, Alain Viari, Sophie Léon, Mojgan Devouassoux‐Shisheboran, Nicolas Voirin, Christelle De La Fouchardière, Brigitte Manship, Alain Puisieux, Christine Lasset, Caroline Moyret‐Lalle
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0103731
Complex Effects of Fertilization on Plant and Herbivore Performance in the Presence of a Plant Competitor and Activated CarbonCited by: 7
Author(s): Nafiseh Mahdavi-Arab, Sebastian T. Meyer, Mohsen Mehrparvar, Wolfgang W. Weisser
Software Mentions: 1
Published: over 10 years ago
10.1038/s41598-018-25377-w
Sex Differences in Cognitive Decline in Subjects with High Likelihood of Mild Cognitive Impairment due to Alzheimer’s diseaseCited by: 83
Author(s): Dongwha Sohn, Katie Shpanskaya, Joseph E. Lucas, Jeffrey R. Petrella, Andrew J. Saykin, Rudolph E. Tanzi, Nagiza F. Samatova, P. Murali Doraiswamy
Software Mentions: 1
Published: over 6 years ago
10.1007/s00429-017-1480-5
Cortical morphology of the pars opercularis and its relationship to motor-inhibitory performance in a longitudinal, developing cohortCited by: 25
Author(s): Lauren B. Curley, Erik Newman, Wesley K. Thompson, Timothy T. Brown, Donald J. Hagler, Natacha Akshoomoff, Chase Reuter, Anders M. Dale, Terry L. Jernigan
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-018-26067-3
Long-term impacts of prenatal synthetic glucocorticoids exposure on functional brain correlates of cognitive monitoring in adolescenceCited by: 25
Author(s): Liesa Ilg, Manousos A. Klados, Nina Alexander, Clemens Kirschbaum, Shu-Chen Li
Software Mentions: 1
Published: over 6 years ago
10.3758/s13414-020-02232-7
Phasic pupillary responses modulate object-based attentional prioritizationCited by: 5
Author(s): Sean O’Bryan, Miranda Scolari
Software Mentions: 1
Published: almost 4 years ago
10.1007/s11657-015-0232-5
Adolescent undernutrition and early adulthood bone mass in an urbanizing rural community in IndiaCited by: 8
Author(s): Mika Matsuzaki, Hannah Kuper, Bharati Kulkarni, George B. Ploubidis, Jonathan C. K. Wells, K. V. Radhakrishna, Poornima Prabhakaran, Vipin Gupta, Gagandeep Kaur Walia, Apoorva Aggarwal, Dorairaj Prabhakaran, K. V. Rameshwar Sarma, George Davey Smith, Yoav Ben-Shlomo, Sanjay Kinra
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0172669
Estimating changes in lichen mat volume through time and related effects on barren ground caribou (Rangifer tarandus groenlandicus) movementCited by: 11
Author(s): Gregory J. M. Rickbeil, Txomin Hermosilla, Joanne C. White, Michael A. Wulder
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pbio.2006806
Trophic interactions modify the temperature dependence of community biomass and ecosystem functionCited by: 13
Author(s): Jessica Garzke, Stephanie J. Connor, Ulrich Sommer, Mary I. O’Connor
Software Mentions: 1
Published: over 5 years ago
10.1007/s00442-021-04978-9
Variation of foliar silicon concentrations in temperate forbs: effects of soil silicon, phylogeny and habitatCited by: 5
Author(s): Marius Klotz, Jörg Schaller, Susanne Kurze, Bettina M. J. Engelbrecht
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2018.01683
Negative Binomial Mixed Models for Analyzing Longitudinal Microbiome DataCited by: 45
Author(s): Xinyan Zhang, Yu‐Fang Pei, Boyi Guo, Amanda H. Pendegraft, Wenzhuo Zhuang, Nengjun Yi
Software Mentions: 1
Published: over 6 years ago
10.1136/archdischild-2020-320372
Longitudinal increases in childhood depression symptoms during the COVID-19 lockdownCited by: 146
Author(s): Giacomo Bignardi, Edwin S. Dalmaijer, Alexander Anwyl-Irvine, Tess A. Smith, Roma Šiugždaitė, Stepheni Uh, Duncan E. Astle
Software Mentions: 1
Published: almost 4 years ago
10.3390/ijerph17239011
Weather Woes? Exploring Potential Links between Precipitation and Age-Related Cognitive DeclineCited by: 6
Author(s): Jessica Finlay, Anam Khan, Carina J. Gronlund, Ketlyne Sol, Bohyun Joy Jang, Robert Melendez, Suzanne E. Judd, Philippa Clarke
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0050429
Evaluating the Impact of Handling and Logger Attachment on Foraging Parameters and Physiology in Southern Rockhopper PenguinsCited by: 37
Author(s): Katrin Ludynia, Nina Dehnhard, Maud Poisbleau, Laurent Demongin, Juan F. Masello, Petra Quillfeldt
Software Mentions: 1
Published: about 12 years ago
10.1673/031.011.12501
Evaluation of Readmission Ink as a Marker for Dispersal Studies with the Oriental Fruit Fly,Bactrocera dorsalisCited by: 2
Author(s): Karen M. Froerer, Steven L. Peck, Grant T. McQuate
Software Mentions: 1
Published: about 13 years ago
10.1038/s41598-019-40033-7
Severe wildfire exposes remnant peat carbon stocks to increased post-fire dryingCited by: 15
Author(s): Nicholas Kettridge, Max Lukenbach, Kelly Hokanson, K. J. Devito, Richard M. Petrone, Carl Mendoza, J. M. Waddington
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-45757-0
Noisy galvanic vestibular stimulation modulates spatial memory in young healthy adultsCited by: 24
Author(s): Danica Hilliard, Susanne Passow, Franka Thurm, Nicolas W. Schuck, Alexander Garthe, Gerd Kempermann, Shu-Chen Li
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pbio.0060303
The Worldwide Variation in Avian Clutch Size across Species and SpaceCited by: 341
Author(s): Walter Jetz, Çağan H. Şekercioğlu, Katrin Böhning‐Gaese
Software Mentions: 1
Published: almost 16 years ago
10.1371/journal.pcbi.1003275
Keeping up with the Joneses: Interpersonal Prediction Errors and the Correlation of Behavior in a Tandem Sequential Choice TaskCited by: 11
Author(s): Terry Lohrenz, Meghana Bhatt, Nathan Apple, P. Read Montague
Software Mentions: 1
Published: about 11 years ago
10.3389/fmicb.2017.01599
Marine Microbial Gene Abundance and Community Composition in Response to Ocean Acidification and Elevated Temperature in Two Contrasting Coastal Marine SedimentsCited by: 27
Author(s): Ashleigh R. Currie, Karen Tait, Helen Parry, Beatriz de Francisco-Mora, Natalie Hicks, A. Mark Osborn, Steve Widdicombe, Henrik Ståhl
Software Mentions: 1
Published: over 7 years ago
10.1186/s12870-014-0310-7
Modeling the vacuolar storage of malate shed lights on pre- and post-harvest fruit acidityCited by: 8
Author(s): A Etienne, Michel Génard, Philippe Lobit, Christophe Bugaud
Software Mentions: 1
Published: about 10 years ago
10.1007/s00442-018-4245-9
Species-specific plant–soil feedbacks alter herbivore-induced gene expression and defense chemistry in Plantago lanceolataCited by: 34
Author(s): Feng Zhu, Robin Heinen, Martijn van der Sluijs, Ciska E. Raaijmakers, Arjen Biere, T. Martijn Bezemer
Software Mentions: 1
Published: over 6 years ago
10.1093/aobpla/plv017
Relative importance of phenotypic trait matching and species' abundances in determining plant–avian seed dispersal interactions in a small insular communityCited by: 56
Author(s): Aarón González‐Castro, Shih-Ping Yang, Manuel Nogales, Tomás A. Carlo
Software Mentions: 1
Published: almost 10 years ago
10.1093/aobpla/plw013
How to make a red flower: the combinatorial effect of pigmentsCited by: 25
Author(s): Julienne Ng, Stacey D. Smith
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pcbi.1006243
Human Pavlovian fear conditioning conforms to probabilistic learningCited by: 53
Author(s): Athina Tzovara, Christoph W. Korn, Dominik R. Bach
Software Mentions: 1
Published: about 6 years ago
10.1002/ajb2.1518
Imperforate tracheary elements and vessels alleviate xylem tension under severe dehydration: insights from water release curves for excised twigs of three tree speciesCited by: 8
Author(s): K. Yazaki, Delphis F. Levia, Akiko Takenouchi, Makoto Watanabe, Daisuke Kabeya, Naoko Miki, Haruhiko Taneda, Mayumi Y. Ogasa, Michio Oguro, Shin-Taro Saiki, Hidetaka Tobita, Kenji Fukuda
Software Mentions: 1
Published: over 4 years ago
10.1186/s12874-016-0182-7
How large are the consequences of covariate imbalance in cluster randomized trials: a simulation study with a continuous outcome and a binary covariate at the cluster levelCited by: 14
Author(s): Mirjam Moerbeek, Sander van Schie
Software Mentions: 1
Published: over 8 years ago
10.3389/fnene.2013.00002
Glucagon-like peptide-1 (GLP-1) raises blood-brain glucose transfer capacity and hexokinase activity in human brainCited by: 25
Author(s): Michael Gejl, Susanne Lerche, Lærke Egefjord, Birgitte Brock, Niels Møller, Kim Vang, Anders Rodell, Bo Martin Bibby, Jens J. Holst, Jørgen Rungby, Albert Gjedde
Software Mentions: 1
Published: almost 12 years ago
10.3389/fneur.2018.01145
No Effects of Anodal tDCS on Local GABA and Glx Levels in the Left Posterior Superior Temporal GyrusCited by: 13
Author(s): Gerard Eric Dwyer, Alexander R. Craven, Marco Hirnstein, Kristiina Kompus, Jörg Aßmus, Lars Ersland, Kenneth Hugdahl, Renate Grüner
Software Mentions: 1
Published: almost 6 years ago
10.1111/2041-210X.12845
Processing of acceleration and dive data on‐board satellite relay tags to investigate diving and foraging behaviour in free‐ranging marine predatorsCited by: 37
Author(s): Sam L. Cox, Florian Orgeret, Mathieu Gesta, Charles Rodde, Isaac Heizer, Henri Weimerskirch, Christophe Guinet
Software Mentions: 1
Published: over 7 years ago
10.3389/fneur.2017.00494
Tinnitus Treatment with Oxytocin: A Pilot StudyCited by: 7
Author(s): Andréia Aparecida de Azevedo, Ricardo Rodrigues Figueiredo, Ana Belén Elgoyhen, Berthold Langguth, Norma de Oliveira Penido, Winfried Schlee
Software Mentions: 1
Published: about 7 years ago
10.3389/fneur.2019.00327
Association of Increased Serum S100B Levels With High School Football Subconcussive Head ImpactsCited by: 29
Author(s): Steven W. Zonner, Keisuke Ejima, Zachary W. Bevilacqua, Megan E. Huibregtse, Carmen N. Charleston, Ciara C. Fulgar, Keisuke Kawata
Software Mentions: 1
Published: over 5 years ago
10.3390/md12063733
Analysis of the Biomass Composition of the Demosponge Amphimedon queenslandica on Heron Island Reef, AustraliaCited by: 4
Author(s): J. R. Watson, Timothy C. R. Brennan, Bernard M. Degnan, Sandie M. Degnan, Jens O. Krömer
Software Mentions: 1
Published: over 10 years ago
10.1186/s13229-020-00400-y
Alpha connectivity and inhibitory control in adults with autism spectrum disorderCited by: 9
Author(s): Veronica Yuk, Benjamin T. Dunkley, Evdokia Anagnostou, Margot J. Taylor
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0063712
TTK/hMPS1 Is an Attractive Therapeutic Target for Triple-Negative Breast CancerCited by: 121
Author(s): Virginie Maire, Céline Baldeyron, Matthew Richardson, Bruno Tesson, Anne Vincent‐Salomon, Eléonore Gravier, Bérengère Marty-Prouvost, Leanne de Koning, Guillem Rigaill, Aurélie Dumont, David Gentien, Emmanuel Barillot, Sergio Roman-Roman, Stéphane Depil, Francisco Cruzalegui, Alain St. Pierre, Gordon C. Tucker, Thierry Dubois
Software Mentions: 1
Published: over 11 years ago
10.1038/s41598-018-26485-3
Temperature and the vertical movements of oceanic whitetip sharks, Carcharhinus longimanusCited by: 41
Author(s): Samantha Andrzejaczek, Adrian C. Gleiss, Lance K. B. Jordan, Charitha Pattiaratchi, Lucy A. Howey, Edward J. Brooks, Mark G. Meekan
Software Mentions: 1
Published: over 6 years ago
10.3389/fnins.2020.578566
Age-Related Deficits in Electrophysiological and Behavioral Measures of Binaural Temporal ProcessingCited by: 9
Author(s): Tess K. Koerner, Ramesh Kumar Muralimanohar, Frederick J. Gallun, Curtis J. Billings
Software Mentions: 1
Published: about 4 years ago
10.3389/fnins.2019.01153
Short-Term Choir Singing Supports Speech-in-Noise Perception and Neural Pitch Strength in Older Adults With Age-Related Hearing LossCited by: 38
Author(s): Ella Dubinsky, Emily A. Wood, Gabriel Nespoli, Frank A. Russo
Software Mentions: 1
Published: almost 5 years ago
10.1093/aobpla/plv089
Nitrogen addition and harvest frequency rather than initial plant species composition determine vertical structure and light interception in grasslandsCited by: 4
Author(s): Ute Petersen, J. Isselstein
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pcbi.1008555
Dissecting the links between reward and loss, decision-making, and self-reported affect using a computational approachCited by: 7
Author(s): Vikki Neville, Peter Dayan, Iain D. Gilchrist, Elizabeth S. Paul, Michael Mendl
Software Mentions: 1
Published: almost 4 years ago
10.1007/s11104-019-04337-x
Magnesium biofortification of Italian ryegrass (Lolium multiflorum L.) via agronomy and breeding as a potential way to reduce grass tetany in grazing ruminantsCited by: 11
Author(s): Diriba B. Kumssa, J. A. Lovatt, Neil Graham, Sarah Palmer, Rory Hayden, Lolita Wilson, Scott D. Young, R. Murray Lark, Beth Penrose, E. Louise Ander, R. Thompson, Linxi Jiang, Martin R. Broadley
Software Mentions: 1
Published: almost 5 years ago
10.1007/s10926-016-9680-z
Lending a Helping Hand at Work: A Multilevel Investigation of Prosocial Motivation, Inclusive Climate and Inclusive BehaviorCited by: 17
Author(s): Philippe T. J. H. Nelissen, Ute R. Hülsheger, Gemma M. C. van Ruitenbeek, F.R.H. Zijlstra
Software Mentions: 1
Published: about 8 years ago
10.3389/fnut.2020.577797
The Adaptation of the Carbohydrate Counting Method Affects HbA1c and Improves Anthropometric Indicators in Patients With Diabetes Mellitus 2Cited by: 3
Author(s): Adriana Beatriz Di Iorio, Domingo Orozco-Beltrán, José Antonio Quesada Rico, María Concepción Carratalá Munuera
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0152709
Selenium Digestibility and Bioactivity in Dogs: What the Can Can, the Kibble Can’tCited by: 8
Author(s): Marielle Van Zelst, Myriam Hesta, Kerry Gray, Karen Beech, An Cools, Lucille Alexander, Gijs Du Laing, Geert Janssens
Software Mentions: 1
Published: over 8 years ago
10.3389/fped.2020.00406
Comparison of Lymphocyte Subset Populations in Children From South Africa, US and EuropeCited by: 6
Author(s): Helen Payne, Denise Lawrie, Martin Nieuwoudt, Mark F. Cotton, Diana M Gibb, Abdel Babiker, Deborah K. Glencross, Nigel Klein
Software Mentions: 1
Published: over 4 years ago