Projects: cran: nlme
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/nlme
Linear and Nonlinear Mixed Effects Models
147 versions
Latest release: about 3 years ago
431 dependent packages
137,096 downloads last month
Science Score: 100/100
Starting Score: 100 points
Bonuses:
Very Likely Science (100)
Papers Mentioning nlme 3,265
10.3389/fnagi.2020.553461
The Influence of Aging, Hearing, and Tinnitus on the Morphology of Cortical Gray Matter, Amygdala, and HippocampusCited by: 14
Author(s): Oliver Profant, Antonín Škoch, Jaroslav Tintěra, Veronika Svobodová, Diana Kuchárová, Jana Burianová, Josef Syka
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41598-021-87932-2
Combined effects of crude oil exposure and warming on eggs and larvae of an arctic forage fishCited by: 11
Author(s): Morgan Lizabeth Bender, Julia Giebichenstein, Ragnar Nicolaysen Teisrud, Jennifer Laurent, Marianne Frantzen, James P. Meador, Lisbet Sørensen, Bjørn Henrik Hansen, Helena C. Reinardy, Benjamin J. Laurel, Jasmine Nahrgang
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0214921
Repeatability and reproducibility of multiparametric magnetic resonance imaging of the liverCited by: 62
Author(s): Velicia Bachtiar, Matthew Kelly, H. Wilman, Jaco Jacobs, Rexford D. Newbould, Catherine Kelly, Michael L. Gyngell, Katherine E. Groves, Andy McKay, Amy H. Herlihy, Carolina C. Fernandes, Mark Halberstadt, M.P. Maguire, N Jayaratne, S.J.F. van der Linden, Stefan Neubauer, Rajarshi Banerjee
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0150946
Landscape Simplification Constrains Adult Size in a Native Ground-Nesting BeeCited by: 59
Author(s): Miles Renauld, Alena M. Hutchinson, Gregory M. Loeb, Katja Poveda, Heather Connelly
Software Mentions: 1
Published: over 10 years ago
10.1016/j.jinf.2017.09.019
Long-term outcomes of patients with Streptococcus suis infection in Viet Nam: A case-control studyCited by: 7
Author(s): Vu Thi Lan Huong, Long Bao Hoang, Nguyễn Văn Kính, Ta Thi Dieu Ngan, Vu Tien Viet Dung, Behzad Nadjm, H. Rogier van Doorn, Ngo Thi Hoa, Peter Horby, Heiman Wertheim
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0006887
Direct and Indirect Effects of Climate Change on a Prairie Plant CommunityCited by: 51
Author(s): Peter B. Adler, James Leiker, Jonathan M. Levine
Software Mentions: 1
Published: about 17 years ago
10.3389/fnbeh.2016.00168
Altered Electroencephalographic Activity Associated with Changes in the Sleep-Wakefulness Cycle of C57BL/6J Mice in Response to a Photoperiod ShorteningCited by: 5
Author(s): Stanislav Rozov, Janneke C. Zant, Kestutis Gurevicius, Tarja Porkka‐Heiskanen, Pertti Panula
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0208594
The change of Barthel Index scores from the time of discharge until 3-month post-discharge among acute stroke patients in Malaysia: A random intercept modelCited by: 25
Author(s): Kamarul Imran Musa, Thomas Keegan
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pone.0164629
Climate and Human Pressure Constraints Co-Explain Regional Plant Invasion at Different Spatial ScalesCited by: 3
Author(s): Juan Antonio Campos, Gonzalo García‐Baquero, Lidia Caño, Idoia Biurrun, Itziar García‐Mijangos, Javier Loidi, Mercedes Herrera
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0238703
Multi-volume modeling of Eucalyptus trees using regression and artificial neural networksCited by: 7
Author(s): Gileno Brito de Azevedo, Heitor Vicensotto Tomiazzi, Glauce Táıs de Oliveira Sousa Azevedo, Larissa Pereira Ribeiro Teodoro, Paulo Eduardo Teodoro, Marcos Talvani Pereira de Souza, Tays Silva Batista, Humberto de Jesus Eufrade-Junior, Saulo Philipe Sebastião Guerra
Software Mentions: 1
Published: about 6 years ago
10.3389/fdata.2020.00024
Statistical Disease Progression Modeling in Alzheimer DiseaseCited by: 30
Author(s): Lars Lau Rakêt
Software Mentions: 1
Published: about 6 years ago
10.1186/s12891-017-1861-1
Quantifying bone marrow inflammatory edema in the spine and sacroiliac joints with thresholdingCited by: 5
Author(s): Ioanna Chronaiou, Ruth Stoklund Thomsen, Else Marie Huuse, Leslie R. Euceda, Susanne Juhl Pedersen, Mari Hoff, Beathe Sitter
Software Mentions: 1
Published: almost 9 years ago
10.3389/fbioe.2021.724304
Mixed Acid Fermentation of Carbohydrate-Rich Dairy Manure HydrolysateCited by: 11
Author(s): Abel T. Ingle, Nathaniel W. Fortney, Kevin A. Walters, Timothy J. Donohue, Daniel R. Noguera
Software Mentions: 1
Published: about 5 years ago
10.3389/fbioe.2019.00163
Probing ADP Induced Aggregation Kinetics During Platelet-Nanoparticle Interactions: Functional Dynamics Analysis to Rationalize Safety and BenefitsCited by: 10
Author(s): Souvik Bandyopadhyay, Mohammad Azharuddin, Anjan Kr-R. Dasgupta, Bhaswati Ganguli, Sugata SenRoy, Hirak K. Patra, Suryyani Deb
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0102465
Impact of Osteopathic Treatment on Pain in Adult Patients with Cystic Fibrosis – A Pilot Randomized Controlled StudyCited by: 10
Author(s): D. Hubert, Lucile Soubeiran, Fabrice Gourmelon, D. Grenet, R. Serreau, Élodie Perrodeau, Rafael Zegarra-Parodi, Isabelle Boutron
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0128238
Resampling Method for Applying Density-Dependent Habitat Selection Theory to Wildlife SurveysCited by: 1
Author(s): Olivia Tardy, Ariane Massé, Fanie Pelletier, Daniel Fortin
Software Mentions: 1
Published: over 11 years ago
10.1186/s12891-017-1725-8
Which patient-specific and surgical characteristics influence postoperative pain after THA in a fast-track setting?Cited by: 8
Author(s): Yvon M den Hartog, Gerjon Hannink, Nick T. van Dasselaar, Nina M C Mathijssen, Stephan B W Vehmeijer
Software Mentions: 1
Published: about 9 years ago
10.1186/s12874-016-0113-7
Mixed-strain housing for female C57BL/6, DBA/2, and BALB/c mice: validating a split-plot design that promotes refinement and reductionCited by: 28
Author(s): Michael D. Walker, Carole Fureix, Rupert Palme, Jonathan A. Newman, Jamie Ahloy‐Dallaire, Georgia Mason
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0136516
Predicting Extreme Droughts in Savannah Africa: A Comparison of Proxy and Direct Measures in Detecting Biomass Fluctuations, Trends and Their CausesCited by: 32
Author(s): David Western, Victor N. Mose, Jeffrey S. Worden, David Maitumo
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0165542
When Common Birds Became Rare: Historical Records Shed Light on Long-Term Responses of Bird Communities to Global Change in the Largest Wetland of FranceCited by: 18
Author(s): Thomas Galewski, Vincent Devictor
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0180240
Potential of Eucalyptus camaldulensis for phytostabilization and biomonitoring of trace-element contaminated soilsCited by: 30
Author(s): Paula Madejón, Teodoro Marañón, Carmen M. Navarro‐Fernández, María Teresa Domínguez, José M. Alegre, Brett Robinson, J.M. Murillo
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0021038
Embryonic Death Is Linked to Maternal Identity in the Leatherback Turtle (Dermochelys coriacea)Cited by: 52
Author(s): Aran Rafferty, Pilár Santidrián Tomillo, James R. Spotila, Frank V. Paladino, Richard D. Reina
Software Mentions: 1
Published: over 15 years ago
10.3389/fcimb.2014.00177
Mathematical modeling provides kinetic details of the human immune response to vaccinationCited by: 37
Author(s): Dustin Le, Joseph D. Miller, Vitaly V. Ganusov
Software Mentions: 1
Published: over 11 years ago
10.3389/fcimb.2020.00427
Phlebotomus perniciosus Recombinant Salivary Proteins Polarize Murine Macrophages Toward the Anti-Inflammatory PhenotypeCited by: 6
Author(s): Petra Sumová, Nikola Polanská, Tereza Leštinová, Tatiana Spitzová, Barbora Kalousková, Ondřej Vaněk, Petr Volf, Iva Rohoušová
Software Mentions: 1
Published: about 6 years ago
10.1186/1471-2288-9-73
Multivariate random effects meta-analysis of diagnostic tests with multiple thresholdsCited by: 110
Author(s): Taye H. Hamza, Lidia R. Arends, Hans C. van Houwelingen, Theo Stijnen
Software Mentions: 1
Published: almost 17 years ago
10.1371/journal.pone.0122334
Isotopic Incorporation Rates and Discrimination Factors in Mantis Shrimp CrustaceansCited by: 35
Author(s): Maya S deVries, Carlos Martı́nez del Rio, Tate Tunstall, Todd E. Dawson
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0215503
Predicting sediment and nutrient concentrations from high-frequency water-quality dataCited by: 19
Author(s): Catherine Leigh, Sevvandi Kandanaarachchi, James McGree, Rob Hyndman, Omar Alsibai, Kerrie Mengersen, Erin E. Peterson
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-021-89449-0
Quantitative modeling of radioactive cesium concentrations in large omnivorous mammals after the Fukushima nuclear power plant accidentCited by: 1
Author(s): Igor Shuryak
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0149927
Critical Difference and Biological Variation in Biomarkers of Oxidative Stress and Nutritional Status in AthletesCited by: 23
Author(s): Nathan A. Lewis, John Newell, Richard Burden, Glyn Howatson, Charles R. Pedlar
Software Mentions: 1
Published: over 10 years ago
10.1038/s41598-021-90134-5
Contrasting metabolic strategies of two co-occurring deep-sea octocoralsCited by: 9
Author(s): Maria Rakka, Sandra R. Maier, Dick van Oevelen, Antônio Francisco Godinho, Meri Bilan, Covadonga Orejas, Marina Carreiro‐Silva
Software Mentions: 1
Published: over 5 years ago
10.1186/s12874-016-0182-7
How large are the consequences of covariate imbalance in cluster randomized trials: a simulation study with a continuous outcome and a binary covariate at the cluster levelCited by: 14
Author(s): Mirjam Moerbeek, Sander van Schie
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0140221
Validating the Incorporation of 13C and 15N in a Shorebird That Consumes an Isotopically Distinct Chemosymbiotic BivalveCited by: 5
Author(s): Jan A. van Gils, Mohamed Vall Ahmedou Salem
Software Mentions: 1
Published: almost 11 years ago
10.3389/fnhum.2017.00110
No Evidence That Short-Term Cognitive or Physical Training Programs or Lifestyles Are Related to Changes in White Matter Integrity in Older Adults at Risk of DementiaCited by: 21
Author(s): Patrick Fissler, Hans‐Peter Müller, Olivia C. Küster, Daria Laptinskaya, Franka Thurm, Alexander Wöll, Thomas Elbert, Jan Kassubek, Christine A. F. Von Arnim, Iris‐Tatjana Kolassa
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0186969
Can you catch Ebola from a stork bite? Inductive reasoning influences generalization of perceived zoonosis riskCited by: 7
Author(s): Tyler Davis, Micah B. Goldwater, Mark E. Ireland, Nicholas Gaylord, Jason Van Allen
Software Mentions: 1
Published: almost 9 years ago
10.1186/1471-2350-14-18
Genome-wide analysis validates aberrant methylation in fragile X syndrome is specific to the FMR1locusCited by: 46
Author(s): Reid S. Alisch, Tao Wang, Pankaj Chopra, Jeannie Visootsak, Karen N. Conneely, Stephen T. Warren
Software Mentions: 1
Published: over 13 years ago
10.1186/s12916-020-1500-9
Measuring resilience prospectively as the speed of affect recovery in daily life: a complex systems perspective on mental healthCited by: 24
Author(s): Anna Kuranova, Sanne H. Booij, Claudia Menne-Lothmann, Jeroen Decoster, Ruud van Winkel, Philippe Delespaul, Marc De Hert, Cathérine Derom, Evert Thiery, Bart P. F. Rutten, Nele Jacobs, Jim van Os, Johanna T. W. Wigman, Marieke Wichers
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0253929
Bowhead and beluga whale acoustic detections in the western Beaufort Sea 2008–2018Cited by: 4
Author(s): Kathleen M. Stafford, John J. Citta, Stephen R. Okkonen, Jinlun Zhang
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0179928
Effects of warming rate, acclimation temperature and ontogeny on the critical thermal maximum of temperate marine fish larvaeCited by: 60
Author(s): Marta Moyano, Caroline Lourdes Candebat, Yannick Ruhbaum, Santiago Álvarez-Fernández, Guy Claireaux, José‐Luis Zambonino-Infante, Myron A. Peck
Software Mentions: 1
Published: about 9 years ago
10.3389/fimmu.2020.01427
Human Milk From Atopic Mothers Has Lower Levels of Short Chain Fatty AcidsCited by: 45
Author(s): Lisa F. Stinson, Petya Koleva, Merete Eggesbø, Christine Cole Johnson, Ganesa Wegienka, Elloise du Toit, Naoki Shimojo, Daniel Munblit, Dianne E. Campbell, Susan L. Prescott, Donna T. Geddes, Anita L. Kozyrskyj
Software Mentions: 1
Published: about 6 years ago
10.3389/fimmu.2021.684147
Modeling Influencing Factors in B-Cell Reconstitution After Hematopoietic Stem Cell Transplantation in ChildrenCited by: 5
Author(s): Nicolaas G. van der Maas, Erik G J von Asmuth, Dagmar Berghuis, Pauline A. van Schouwenburg, Hein Putter, Mirjam van der Burg, Arjan C. Lankester
Software Mentions: 1
Published: over 5 years ago
10.1186/s12914-014-0031-x
Maternal health development programs: comparing priorities of bilateral and private donorsCited by: 3
Author(s): Cécile Deleye, Achim Lang
Software Mentions: 1
Published: almost 12 years ago
10.3389/fimmu.2018.00003
Corticosterone Preexposure Increases NF-κB Translocation and Sensitizes IL-1β Responses in BV2 Microglia-Like CellsCited by: 18
Author(s): Jiajun Liu, Sanam Mustafa, Daniel T. Barratt, Mark R. Hutchinson
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-021-92585-2
Coordinated gas release among the physostomous fish sprat (Sprattus sprattus)Cited by: 0
Author(s): Stein Kaartvedt, Karl I. Ugland, Jan Heuschele, Ingrid Solberg
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-021-93199-4
Developmental environment shapes honeybee worker response to virus infectionCited by: 3
Author(s): Alexander Walton, Amy L. Toth, Adam Doležal
Software Mentions: 1
Published: about 5 years ago
10.1186/1471-2164-15-131
Array-based assay detects genome-wide 5-mC and 5-hmC in the brains of humans, non-human primates, and miceCited by: 37
Author(s): Pankaj Chopra, Ligia A. Papale, Andrew T. J. White, Andrea Hatch, Roger Brown, Mark A. Garthwaite, Patrick H. Roseboom, Thaddeus G. Golos, Stephen T. Warren, Reid S. Alisch
Software Mentions: 1
Published: over 12 years ago
10.3389/fimmu.2018.02540
Molecular Markers Distinguishing T Cell Subtypes With TSDR Strand-Bias MethylationCited by: 15
Author(s): Ekaterina Minskaia, Barbara C. Saraiva, Maria Soares, Rita I. Azevedo, Ruy M. Ribeiro, Saumya Kumar, Ana I. S. Vieira, João F. Lacerda
Software Mentions: 1
Published: almost 8 years ago
10.3389/fimmu.2019.00025
Thymic Function as a Predictor of Immune Recovery in Chronically HIV-Infected Patients Initiating Antiretroviral TherapyCited by: 28
Author(s): Rita Rb-Silva, Cláudia Nóbrega, Cecília Azevedo, Emília Athayde, João Canto-Gomes, I. Pinto Ferreira, Rémi Cheynier, Andrew J. Yates, Ana Horta, Margarida Correia-Neves
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-021-93924-z
A longitudinal analysis of COVID-19 lockdown stringency on sleep and resting heart rate measures across 20 countriesCited by: 17
Author(s): Ju Lynn Ong, Titus Lau, Mari Karsikas, Hannu Kinnunen, Michael W.L. Chee
Software Mentions: 1
Published: about 5 years ago
10.3389/fnint.2015.00015
Modeling circadian and sleep-homeostatic effects on short-term interval timingCited by: 2
Author(s): Jakub Späti, Sayaka Aritake, Andrea Meyer, Shingo Kitamura, Akiko Hida, Shigekazu Higuchi, Yoshiya Moriguchi, Kazuo Mishima
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0178176
Wheat root length and not branching is altered in the presence of neighbours, including blackgrassCited by: 6
Author(s): Jessica A. Finch, Gaëtan Guillaume, Stephanie French, Renato Colaço, Julia M. Davies, Stéphanie M. Swarbreck
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0015161
Paleotemperature Proxies from Leaf Fossils Reinterpreted in Light of Evolutionary HistoryCited by: 97
Author(s): Stefan A. Little, Steven W. Kembel, Peter Wilf
Software Mentions: 1
Published: almost 16 years ago
10.1371/journal.pone.0162016
Identification of Peptide Mimics of a Glycan Epitope on the Surface of Parasitic Nematode LarvaeCited by: 6
Author(s): Saleh Umair, Qing Deng, Joanna M. Roberts, R.J. Shaw, I.A. Sutherland, A. Pernthaner
Software Mentions: 1
Published: about 10 years ago
10.3389/fmicb.2017.02360
Using Click-Chemistry for Visualizing in Situ Changes of Translational Activity in Planktonic Marine BacteriaCited by: 36
Author(s): Ainara Leizeaga, Margarita Estrany, Irene Forn, Marta Sebastián
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0250827
The morning after the night before: Alcohol-induced blackouts impair next day recall in sober young adultsCited by: 1
Author(s): Judith Jackson, David I. Donaldson, Benjamin Dering
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0135127
Multimodal Advertisement of Pregnancy in Free-Ranging Female Japanese Macaques (Macaca fuscata)Cited by: 19
Author(s): Lucie Rigaill, Andrew J. J. MacIntosh, James P. Higham, Sandra Winters, Keiko Shimizu, Keiko Mouri, Takeshi Furuichi, Cécile Garcia
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0056568
Evaluating Spatial Overlap and Relatedness of White-tailed Deer in a Chronic Wasting Disease Management ZoneCited by: 20
Author(s): Seth B. Magle, Michael D. Samuel, Timothy R. Van Deelen, Stacie J. Robinson, Nancy E. Mathews
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0113575
Neuroprotection by Argon Ventilation after Perinatal Asphyxia: A Safety Study in Newborn PigletsCited by: 23
Author(s): Thomas Alderliesten, Laurent M A Favié, Robert W. Neijzen, Volker Auwärter, Cora H. Nijboer, Roland E. J. Marges, Carin M. A. Rademaker, Jürgen Kempf, Frank van Bel, Floris Groenendaal
Software Mentions: 1
Published: almost 12 years ago
10.1186/1471-2164-7-279
Gene expression in TGFbeta-induced epithelial cell differentiation in a three-dimensional intestinal epithelial cell differentiation modelCited by: 11
Author(s): Kati Juuti‐Uusitalo, Katri Kaukinen, Markku Mäki, Jarno Tuimala, Heikki Kainulainen
Software Mentions: 1
Published: almost 20 years ago
10.1371/journal.pone.0127432
Adrenal Hormones in Common Bottlenose Dolphins (Tursiops truncatus): Influential Factors and Reference IntervalsCited by: 25
Author(s): Leslie Hart, Randall S. Wells, Nick Kellar, Brian C. Balmer, Aleta A. Hohn, Simon Lamb, Teri Rowles, Eric S. Zolman, Lori H. Schwacke
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0106419
Symbiodinium Photosynthesis in Caribbean OctocoralsCited by: 19
Author(s): Blake Ramsby, Kartick P. Shirur, Roberto Iglesias-Prieto, Tamar L. Goulet
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0012604
Intraspecific Diversity Regulates Fungal Productivity and RespirationCited by: 27
Author(s): Anna Wilkinson, Martin Solan, Andrew Taylor, Ian J. Alexander, David Johnson
Software Mentions: 1
Published: about 16 years ago
10.1371/journal.pone.0136369
Single Doses up to 800 mg of E-52862 Do Not Prolong the QTc Interval – A Retrospective Validation by Pharmacokinetic-Pharmacodynamic Modelling of Electrocardiography Data Utilising the Effects of a Meal on QTc to Demonstrate ECG Assay SensitivityCited by: 13
Author(s): Jörg Täubel, Georg Ferber, Ulrike Lorch, Duolao Wang, Mariano Sust, A. John Camm
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0194752
Effect of leukocyte-reduced platelet-rich plasma on osteoarthritis caused by cranial cruciate ligament rupture: A canine gait analysis modelCited by: 22
Author(s): Jose M. G. Vilar, María Manera, Ángelo Santana, Giuseppe Spinella, Oliver Rodríguez, Mónica Rubio, José M. Carrillo, Joaquín Sopena, M. Batista
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0057747
Implicating Culicoides Biting Midges as Vectors of Schmallenberg Virus Using Semi-Quantitative RT-PCRCited by: 79
Author(s): Eva Veronesi, Mark Henstock, Simon Gubbins, Carrie Batten, Robyn Manley, James Barber, Bernd Hoffmann, Martin Beer, Houssam Attoui, Peter P. C. Mertens, Simon Carpenter
Software Mentions: 1
Published: over 13 years ago