cran: mclust | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0096074

An Ancient Mediterranean Melting Pot: Investigating the Uniparental Genetic Structure and Population History of Sicily and Southern Italy
Cited by: 37
Author(s): Stefania Sarno, Alessio Boattini, Marilisa Carta, Gianmarco Ferri, Milena Alù, Daniele Yang Yao, Graziella Ciani, Davide Pettener, Donata Luiselli
Software Mentions: 2
Published: over 10 years ago

10.3390/cancers13020177

CD73, Tumor Plasticity and Immune Evasion in Solid Cancers
Cited by: 27
Author(s): Haitang Yang, Feng Yao, Paul F. Davis, Swee T. Tan, Sean Hall
Software Mentions: 2
Published: almost 4 years ago

10.1038/s42003-020-0912-6

Human access impacts biodiversity of microscopic animals in sandy beaches
Cited by: 24
Author(s): Alejandro Martínez, Ester M. Eckert, Tom Artois, G.M. Careddu, Marco Casu, Vittorio Gazale, Stefan Gobert, Viatcheslav N. Ivanenko, Ulf Jondelius, Marinella Marzano, Graziano Pesole, Aldo Zanello, Mary Antonio Donatello Todaro, Diego Fontaneto
Software Mentions: 2
Published: over 4 years ago

10.3390/e23050518

A Unified Formulation of k-Means, Fuzzy c-Means and Gaussian Mixture Model by the Kolmogorov–Nagumo Average
Cited by: 6
Author(s): Osamu Komori, Shinto Eguchi
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2016.00160

SRBreak: A Read-Depth and Split-Read Framework to Identify Breakpoints of Different Events Inside Simple Copy-Number Variable Regions
Cited by: 7
Author(s): Hoang Nguyen, James Boocock, Tony R. Merriman, Michael A. Black
Software Mentions: 2
Published: about 8 years ago

10.1534/g3.119.400279

Genome Sequencing of Pleurozium schreberi: The Assembled and Annotated Draft Genome of a Pleurocarpous Feather Moss
Cited by: 20
Author(s): Eric Pederson, Denis Warshan, Ulla Rasmussen
Software Mentions: 2
Published: about 5 years ago

10.1534/genetics.116.189209

Complex Ancient Genetic Structure and Cultural Transitions in Southern African Populations
Cited by: 47
Author(s): Francesco Montinaro, George B.J. Busby, Miguel González‐Santos, Ockie Oosthuitzen, Erika Oosthuitzen, Paolo Anagnostou, Giovanni Destro‐Bisol, Vincenzo Lorenzo Pascali, Cristian Capelli
Software Mentions: 2
Published: almost 8 years ago

10.1186/gb-2011-12-10-r101

SpeCond: a method to detect condition-specific gene expression
Cited by: 19
Author(s): Florence M.G. Cavalli, Richard Bourgon, Wolfgang Huber, Juan M. Vaquerizas, Nicholas M. Luscombe
Software Mentions: 2
Published: almost 14 years ago

10.1186/s13059-014-0433-z

Development of synchronous VHL syndrome tumors reveals contingencies and constraints to tumor evolution
Cited by: 64
Author(s): Rosalie Fisher, Stuart Horswell, Andrew Rowan, Maximilian P Salm, Elza C. de Bruin, Sakshi Gulati, Nicholas McGranahan, Mark Stares, Marco Gerlinger, Ignacio Varela, Andrew Crockford, Francesco Favero, Virginie Quidville, Fabrice André, Carolina Navas, Eva Grönroos, David Nicol, Steve Hazell, David Hrouda, Tim O’Brien, Nik Matthews, Ben Phillimore, Sharmin Begum, Adam Rabinowitz, Jennifer Biggs, Paul A. Bates, Neil Q. McDonald, Gordon Stamp, Bradley Spencer‐Dene, James J. Hsieh, Jianing Xu, Lisa Pickering, Martin Gore, James Larkin, Charles Swanton
Software Mentions: 2
Published: over 10 years ago

10.1186/gm233

Metabolome in schizophrenia and other psychotic disorders: a general population-based study
Cited by: 127
Author(s): Matej Orešič, Jing Tang, Tuulikki Seppänen‐Laakso, Ismo Mattila, Suoma Saarni, Samuli I. Saarni, Jouko Lönnqvist, Marko Sysi-Aho, Tuulia Hyötyläinen, Jonna Perälä, Jaana Suvisaari
Software Mentions: 2
Published: almost 14 years ago

10.3390/insects10110384

A Comparison of Three Approaches for Larval Instar Separation in Insects—A Case Study of Dendrolimus pini
Cited by: 6
Author(s): Lidia Sukovata
Software Mentions: 2
Published: about 5 years ago

10.1093/jac/dkv039

Pharmacokinetics of anti-TB drugs in Malawian children: reconsidering the role of ethambutol
Cited by: 19
Author(s): R Mlotha, David Waterhouse, Fraction K. Dzinjalamala, Alison Ardrey, Elizabeth Molyneux, Geraint R. Davies, Steve Ward
Software Mentions: 2
Published: over 9 years ago

10.1172/JCI142823

An unbiased approach to defining bona fide cancer neoepitopes that elicit immune-mediated cancer rejection
Cited by: 16
Author(s): Cory A. Brennick, Mariam M. George, Marmar Moussa, Adam T. Hagymasi, Sahar Al Seesi, Tatiana Shcheglova, Ryan P Englander, Grant L.J. Keller, Jeremy L. Balsbaugh, Brian M. Baker, Andrea Schietinger, Ion Măndoiu, Pramod K. Srivastava
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-018-35057-4

Combining fish and benthic communities into multiple regimes reveals complex reef dynamics
Cited by: 30
Author(s): Mary K. Donovan, Alan M. Friedlander, Joey Lecky, Jean-Baptiste Jouffray, Gareth J. Williams, Lisa M. Wedding, Larry B. Crowder, A. S. Erickson, Nicholas A. J. Graham, Jamison M. Gove, Carrie V. Kappel, Kendra Karr, John N. Kittinger, Albert V. Norström, Magnus Nyström, Kirsten L.L. Oleson, Kostantinos A. Stamoulis, Crow White, Ivor D. Williams, Kimberly A. Selkoe
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-019-45938-x

VCF2CNA: A tool for efficiently detecting copy-number alterations in VCF genotype data and tumor purity
Cited by: 5
Author(s): Daniel K. Putnam, Xiaotu Ma, Stephen V. Rice, Yu Liu, Scott Newman, Jinghui Zhang, Xiang Chen
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-46735-2

AAV GCG-EGFP, a new tool to identify glucagon-secreting α-cells
Cited by: 6
Author(s): Eva Tudurí, Maria M. Glavas, Ali Asadi, Robert K. Baker, Cara Ellis, Galina Soukhatcheva, Marjolaine Philit, Frank K. Huynh, James D. Johnson, C. Bruce Verchere, Timothy J. Kieffer
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-54076-3

Lithium alters expression of RNAs in a type-specific manner in differentiated human neuroblastoma neuronal cultures, including specific genes involved in Alzheimer’s disease
Cited by: 12
Author(s): Bryan Maloney, Yokesh Balaraman, Yunlong Liu, Nipun Chopra, Howard J. Edenberg, John R. Kelsoe, John I. Nürnberger, Debomoy K. Lahiri
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-73937-w

Evolutionary analysis of the Moringa oleifera genome reveals a recent burst of plastid to nucleus gene duplications
Cited by: 10
Author(s): José Ojeda-López, Juan Pablo Marczuk‐Rojas, Oliver Aleksandrei Polushkina, Darius Purucker, María Salinas, Lorenzo Carretero‐Paulet
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-020-76783-y

Investigating the origin and authenticity of Victoria Cross medals using X-ray fluorescence spectrometry
Cited by: 1
Author(s): Andrew Marriott, James Prendergast
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-021-85578-8

Composition of receptor tyrosine kinase-mediated lipid micro-domains controlled by adaptor protein interaction
Cited by: 3
Author(s): Arndt Rohwedder, Sabine Knipp, Lee D. Roberts, John E. Ladbury
Software Mentions: 2
Published: over 3 years ago

10.1128/mBio.00927-21

Experimental-Evolution-Driven Identification of Arabidopsis Rhizosphere Competence Genes in Pseudomonas protegens
Cited by: 13
Author(s): Erqin Li, Hao Zhang, Henan Jiang, Corné M. J. Pieterse, Alexandre Jousset, Peter A. H. M. Bakker, Ronnie de Jonge
Software Mentions: 2
Published: over 3 years ago

10.1128/mBio.00909-21

Persister Escherichia coli Cells Have a Lower Intracellular pH than Susceptible Cells but Maintain Their pH in Response to Antibiotic Treatment
Cited by: 41
Author(s): Olivia Goode, Ashley Smith, Ashraf Zarkan, Jehangir Cama, Brandon M. Invergo, Daaniyah Belgami, Santiago Caño-Muñiz, Jeremy Metz, Paul O’Neill, Aaron R. Jeffries, Isobel H. Norville, Jonathan David, David Summers, Stefano Pagliara
Software Mentions: 2
Published: about 3 years ago

10.3390/ijerph17051516

Internet Gaming Disorder Clustering Based on Personality Traits in Adolescents, and Its Relation with Comorbid Psychological Symptoms
Cited by: 22
Author(s): Vega González-Bueso, Juan José Villalaín Santamaría, Ignasi Oliveras, Daniel Fernández, Elena Paulino Montero, Marta Baño, Susana Jiménez‐Murcia, Amparo del Pino-Gutiérrez, Joan Ribas
Software Mentions: 2
Published: over 4 years ago

10.3390/ijerph18105253

COVID-19 Peritraumatic Distress as a Function of Age and Gender in a Spanish Sample
Cited by: 17
Author(s): María Pilar Jiménez, Jennifer A. Rieker, José Manuel Reales Avilés, Soledad Ballesteros
Software Mentions: 2
Published: over 3 years ago

10.1002/JLB.2A0618-228R

Phosphatase inhibitor PPP1R11 modulates resistance of human T cells toward Treg-mediated suppression of cytokine expression
Cited by: 11
Author(s): Rubin Narayan Joshi, Sunjay Jude Fernandes, Mei Shang, Narsis A. Kiani, David Green, Jesper Tegnér, Angelika Schmidt
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms161025897

Identification of Molecular Fingerprints in Human Heat Pain Thresholds by Use of an Interactive Mixture Model R Toolbox (AdaptGauss)
Cited by: 36
Author(s): Alfred Ultsch, Michael C. Thrun, Onno Hansen-Goos, Jörn Lötsch
Software Mentions: 2
Published: about 9 years ago

10.1016/j.isci.2020.101079

Orthogonal Proteomic Platforms and Their Implications for the Stable Classification of High-Grade Serous Ovarian Cancer Subtypes
Cited by: 21
Author(s): Stefani N. Thomas, Betty Friedrich, Michael Schnaubelt, Daniel W. Chan, Hui Zhang, Ruedi Aebersold
Software Mentions: 2
Published: over 4 years ago

10.18632/oncotarget.11962

LINC00520 is induced by Src, STAT3, and PI3K and plays a functional role in breast cancer
Cited by: 40
Author(s): Whitney S. Henry, David G. Hendrickson, Francisco Beça, Benjamin Glass, Marianne Lindahl-Allen, Lizhi He, Zhe Ji, Kevin Struhl, Andrew H. Beck, John L. Rinn, Alex Toker
Software Mentions: 2
Published: about 8 years ago

10.18632/oncotarget.16323

Histone hypoacetylation contributes to CXCL12 downregulation in colon cancer: impact on tumor growth and cell migration
Cited by: 12
Author(s): B. Romain, Radhia Benbrika-Nehmar, Laëtitia Marisa, M Legrain, Viviane Lobstein, Attila Oravecz, Laetitia Poidevin, Cyril Bour, Jean–Noël Freund, Isabelle Duluc, Dominique Guenot, Erwan Pencreach
Software Mentions: 2
Published: over 7 years ago

10.1186/s13148-015-0165-2

Aberrant DNA methylation profiles of inherited and sporadic colorectal cancer
Cited by: 43
Author(s): Nora Sahnane, Francesca Magnoli, Barbara Bernasconi, Maria Grazia Tibiletti, Chiara Romualdi, Monica Pedroni, Maurizio Ponz de Leòn, Giulia Magnani, Luca Reggiani Bonetti, Lucio Bertario, Stefano Signoroni, Carlo Capella, Fausto Sessa, Daniela Furlan
Software Mentions: 1
Published: almost 9 years ago

10.1080/0886022X.2021.1945464

Different kidney function trajectory patterns before dialysis in elderly patients: clinical implications and outcomes
Cited by: 3
Author(s): Josefina Santos, Pedro F. Oliveira, Mílton Severo, Luísa Lobato, António Cabrita, Isabel Fonseca
Software Mentions: 1
Published: almost 4 years ago

10.1038/sdata.2014.5

miRNA expression atlas in male rat
Cited by: 49
Author(s): Kenji Minami, Takeki Uehara, Yuji Morikawa, Ko Omura, Masayuki Kanki, Akira Horinouchi, Atsushi Ono, Hiroshi Yamada, Yasuo Ohno, Tetsuro Urushidani
Software Mentions: 1
Published: over 10 years ago

10.1038/srep17564

Leveraging a Multi-Omics Strategy for Prioritizing Personalized Candidate Mutation-Driver Genes: A Proof-of-Concept Study
Cited by: 12
Author(s): Keyue Ding, Songfeng Wu, Wantao Ying, Qi Pan, Xiaoyuan Li, Dachun Zhao, Xianyu Li, Qing Zhao, Yunping Zhu, Hong Ren, Xiaohong Qian
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0105918

Might Depression, Psychosocial Adversity, and Limited Social Assets Explain Vulnerability to and Resistance against Violent Radicalisation?
Cited by: 84
Author(s): Kamaldeep Bhui, Barry J. Everitt, Edgar Jones
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0140252

Beneficial Bacteria Isolated from Grapevine Inner Tissues Shape Arabidopsis thaliana Roots
Cited by: 39
Author(s): Enrico Baldan, Sebastiano Nigris, Chiara Romualdi, Stefano D’Alessandro, Anna Clocchiatti, Michela Zottini, Piergiorgio Stevanato, Andrea Squartini, Barbara Baldan
Software Mentions: 1
Published: about 9 years ago

10.1038/srep40599

Differential Effects of Vitamins A and D on the Transcriptional Landscape of Human Monocytes during Infection
Cited by: 20
Author(s): Tilman E. Klassert, Julia Bräuer, Martin Hölzer, Magdalena Stock, Konstantin Riege, Cristina Zubiría-Barrera, Müller Mm, Silke Rummler, Christine Skerka, Hortense Slevogt
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0190574

A parsimonious characterization of change in global age-specific and total fertility rates
Cited by: 17
Author(s): Athena Pantazis, Samuel J. Clark
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0114020

Tailoring the Implementation of New Biomarkers Based on Their Added Predictive Value in Subgroups of Individuals
Cited by: 4
Author(s): Anoukh van Giessen, Karel G.M. Moons, G. Ardine de Wit, W M Monique Verschuren, Jolanda M. A. Boer, Hendrik Koffijberg
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0248369

Climbing since the early Miocene: The fossil record of Paullinieae (Sapindaceae)
Cited by: 8
Author(s): Nathan A. Jud, Sarah E. Allen, Chris W. Nelson, Carolina Lopes Bastos, Joyce G. Chery
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-018-25318-7

Dietary divergence is associated with increased intra-specific competition in a marine predator
Cited by: 18
Author(s): Norman Ratcliffe, Stacey Adlard, Gabrielle Stowasser, Rona A. R. McGill
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0069816

The Taxonomy Statistic Uncovers Novel Clinical Patterns in a Population of Ischemic Stroke Patients
Cited by: 5
Author(s): Andrzej Tukiendorf, Radosław Kaźmierski, Sławomir Michalak
Software Mentions: 1
Published: over 11 years ago

10.7554/eLife.44590

Functional and anatomical specificity in a higher olfactory centre
Cited by: 72
Author(s): Shahar Frechter, Alexander Shakeel Bates, Sina Tootoonian, Michael J. Dolan, James D. Manton, Arian R. Jamasb, Johannes Kohl, Davi D. Bock, Gregory S.X.E. Jefferis
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0116760

A Neuron-Specific Deletion of the MicroRNA-Processing Enzyme DICER Induces Severe but Transient Obesity in Mice
Cited by: 20
Author(s): Géraldine M. Mang, Sylvain Pradervand, Ngoc-Hien Du, Alaaddin Bulak Arpat, Frédéric Preitner, Leonore Wigger, David Gatfield, Paul Franken
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41598-019-42006-2

Food Income and the Evolution of Forager Mobility
Cited by: 9
Author(s): Elizabeth Gallagher, Stephen Shennan, Mark G. Thomas
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0049860

Hypoxia Increases Mouse Satellite Cell Clone Proliferation Maintaining both In Vitro and In Vivo Heterogeneity and Myogenic Potential
Cited by: 34
Author(s): Luca Urbani, Martina Piccoli, Chiara Franzin, Michela Pozzobon, Paolo De Coppi
Software Mentions: 1
Published: about 12 years ago

10.1186/1471-2105-14-157

Copy number variation genotyping using family information
Cited by: 6
Author(s): Jen-Hwa Chu, Angela J. Rogers, Iuliana Ionita‐Laza, Katayoon Darvishi, Ryan E. Mills, Charles Lee, Benjamin A. Raby
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0078986

Incorporating Conservation Zone Effectiveness for Protecting Biodiversity in Marine Planning
Cited by: 21
Author(s): Azusa Makino, Carissa J. Klein, Maria Beger, Stacy D. Jupiter, Hugh P. Possingham
Software Mentions: 1
Published: about 11 years ago

10.3390/ijms20081926

Dating Whole Genome Duplication in Ceratopteris thalictroides and Potential Adaptive Values of Retained Gene Duplicates
Cited by: 10
Author(s): Rui Zhang, Faguo Wang, Jiao Zhang, Hui Shang, Li Liu, Hao Wang, Guohua Zhao, Hui Shen, Yue‐Hong Yan
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0140811

Developing a Workflow to Identify Inconsistencies in Volunteered Geographic Information: A Phenological Case Study
Cited by: 17
Author(s): Hamed Mehdipoor, R. Zurita-Milla, Alyssa Rosemartin, Katharine L. Gerst, Jake F. Weltzin
Software Mentions: 1
Published: about 9 years ago

10.1186/s12920-017-0302-1

Tensor decomposition-based unsupervised feature extraction identifies candidate genes that induce post-traumatic stress disorder-mediated heart diseases
Cited by: 10
Author(s): Y-h. Taguchi
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0191758

Assessment of data transformations for model-based clustering of RNA-Seq data
Cited by: 5
Author(s): Janelle R Noel-Macdonnell, Joseph Usset, Ellen L. Goode, Brooke L. Fridley
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-57795-0

Pharmacological enrichment of polygenic risk for precision medicine in complex disorders
Cited by: 31
Author(s): William R. Reay, Joshua Atkins, Vaughan J. Carr, Melissa Green, Murray J. Cairns
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-65101-1

First evidence of a palaeo-nursery area of the great white shark
Cited by: 7
Author(s): Jaime A. Villafaña, Sebastián Hernández, Alonso Alvarado, Kenshu Shimada, Catalina Pimiento, Marcelo M. Rivadeneira, Jürgen Kriwet
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-65914-0

Topographic distinction in long-term value signals between presumed dopamine neurons and presumed striatal projection neurons in behaving monkeys
Cited by: 7
Author(s): Kazuki Enomoto, Naoyuki Matsumoto, Hitoshi Inokawa, Minoru Kimura, Hiroshi Yamada
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0134184

The Metabolome in Finnish Carriers of the MYBPC3-Q1061X Mutation for Hypertrophic Cardiomyopathy
Cited by: 19
Author(s): Benedicte Jørgenrud, Mikko Jalanko, Tiina Heliö, Pertti Jääskeläinen, Mika Laine, Mika Hilvo, Markku S. Nieminen, Markku Laakso, Tuulia Hyötyläinen, Matej Orešič, Johanna Kuusisto
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-020-69083-y

ColoType: a forty gene signature for consensus molecular subtyping of colorectal cancer tumors using whole-genome assay or targeted RNA-sequencing
Cited by: 20
Author(s): Steven Buechler, Melissa Stephens, Amanda B. Hummon, Katelyn R. Ludwig, Emily Cannon, Tonia C. Carter, Jeffrey M. Resnick, Yesim Gökmen‐Polar, Sunil Badve
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0099161

Accuracy of Administratively-Assigned Ancestry for Diverse Populations in an Electronic Medical Record-Linked Biobank
Cited by: 31
Author(s): Jacob B. Hall, Logan Dumitrescu, Holli H. Dilks, Dana C. Crawford, William S. Bush
Software Mentions: 1
Published: over 10 years ago

10.1186/s12864-018-4988-z

Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data
Cited by: 54
Author(s): Benjamin Sobkowiak, Judith R. Glynn, Rein M. G. J. Houben, Kim Mallard, Jody Phelan, José Afonso Guerra-Assunção, Louis Banda, Themba Mzembe, Miguel Viveiros, Ruth McNerney, Julian Parkhill, Amelia C. Crampin, Taane G. Clark
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-017-4197-1

Analysis of the genome of the New Zealand giant collembolan (Holacanthella duospinosa) sheds light on hexapod evolution
Cited by: 29
Author(s): Chen Wu, Melissa D. Jordan, Richard D. Newcomb, Neil J. Gemmell, Sarah Bank, Karen Meusemann, Peter K. Dearden, Elizabeth J. Duncan, Sefanie Grosser, Kim Rutherford, Paul P. Gardner, Ross N. Crowhurst, Bernd Steinwender, Leah Tooman, Mark I. Stevens, Thomas R. Buckley
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-021-81119-5

Variable- and person-centered approaches to affect-biased attention in infancy reveal unique relations with infant negative affect and maternal anxiety
Cited by: 15
Author(s): Alicia Vallorani, Xiaoxue Fu, Santiago Morales, Vanessa LoBue, Kristin A. Buss, Koraly Pérez‐Edgar
Software Mentions: 1
Published: almost 4 years ago

10.1186/1471-2156-6-S1-S143

Analysis of alcohol dependence phenotype in the COGA families using covariates to detect linkage
Cited by: 19
Author(s): Brian Reck, Nandita Mukhopadhyay, Hui‐Ju Tsai, Daniel E. Weeks
Software Mentions: 1
Published: almost 19 years ago

10.1371/journal.pone.0140300

Investigating the Temporal Patterns within and between Intrinsic Connectivity Networks under Eyes-Open and Eyes-Closed Resting States: A Dynamical Functional Connectivity Study Based on Phase Synchronization
Cited by: 20
Author(s): Xun‐Heng Wang, Lihua Li, Tao Xu, Zhongxiang Ding
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pntd.0007599

eNose analysis of volatile chemicals from dogs naturally infected with Leishmania infantum in Brazil
Cited by: 9
Author(s): Monica Staniek, Luigi Sedda, Tim Gibson, Cecília Pereira de Souza, Erika Moutinho Costa, Rod J. Dillon, James G. C. Hamilton
Software Mentions: 1
Published: over 5 years ago

10.3390/s21051718

Profiles of Accelerometry-Derived Physical Activity Are Related to Perceived Physical Fatigability in Older Adults
Cited by: 1
Author(s): Jessica Graves, Yujia Qiao, Kyle Moored, Robert M. Boudreau, Elizabeth M. Venditti, Robert T. Krafty, Eric J. Shiroma, Jaroslaw Harezlak, Nancy W. Glynn
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pntd.0005230

Defining Seropositivity Thresholds for Use in Trachoma Elimination Studies
Cited by: 57
Author(s): Stephanie J Migchelsen, Diana L. Martin, Khamphoua Southisombath, Patrick Turyaguma, Anne Heggen, Peter Paul Rubangakene, Hassan Joof, Pateh Makalo, Gretchen Cooley, Sarah Gwyn, Anthony W. Solomon, Martin J. Holland, Paul Courtright, Rebecca Willis, Neal Alexander, David Mabey, Chrissy h. Roberts
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pcbi.1006221

3D morphology-based clustering and simulation of human pyramidal cell dendritic spines
Cited by: 18
Author(s): Sergio Luengo-Sánchez, Isabel Fernaud-Espinosa, Concha Bielza, Ruth Benavides-Piccione, Pedro Larrañaga, Javier DeFelipe
Software Mentions: 1
Published: over 6 years ago

10.1038/s41398-019-0557-8

Bimodal distribution of tone-matching deficits indicates discrete pathophysiological entities within the syndrome of schizophrenia
Cited by: 27
Author(s): Clément Dondé, Antı́gona Martı́nez, Joshua T. Kantrowitz, Gail Silipo, Elisa C. Dias, Gaurav H. Patel, Juan Sanchez-Peña, Cheryl Corcoran, Alice Medalia, Alice M. Saperstein, Blair Vail, Daniel C. Javitt
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22168652

Expression of Cancer Stem Cell Markers EpCAM and CD90 Is Correlated with Anti- and Pro-Oncogenic EphA2 Signaling in Hepatocellular Carcinoma
Cited by: 6
Author(s): Nobuhiko Asakura, Norimasa Nakamura, Atsushi Muroi, Yosui Nojima, Taro Yamashita, Shuichi Kaneko, Kazuki Ikeda, Naohiko Koshikawa, Takashi Suzuki
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2105-7-S4-S17

Evaluation of clustering algorithms for gene expression data
Cited by: 55
Author(s): Susmita Datta, Somnath Datta
Software Mentions: 1
Published: almost 18 years ago

10.7717/peerj.2585

Viral recombination blurs taxonomic lines: examination of single-stranded DNA viruses in a wastewater treatment plant
Cited by: 21
Author(s): Victoria M. Pearson, S. Brian Caudle, Darin R. Rokyta
Software Mentions: 1
Published: about 8 years ago

10.1038/s41396-019-0583-9

Regulation of fungal decomposition at single-cell level
Cited by: 18
Author(s): Michiel Op De Beeck, Carl Troein, Syahril Siregar, Luigi Gentile, Giuseppe Abbondanza, Carsten Peterson, Per Persson, Anders Tunlid
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12966-018-0743-8

A functional description of adult picky eating using latent profile analysis
Cited by: 21
Author(s): Jordan M. Ellis, Hana F. Zickgraf, Amy T. Galloway, Jamal H. Essayli, Matthew C. Whited
Software Mentions: 1
Published: about 6 years ago

10.1186/1756-3305-6-167

5-methyl-cytosine and 5-hydroxy-methyl-cytosine in the genome of Biomphalaria glabrata, a snail intermediate host of Schistosoma mansoni
Cited by: 44
Author(s): Sara Fneich, Nolwenn M. Dheilly, Coen M. Adema, Anne Rognon, Michael Reichelt, Jan Bulla, Christoph Grunau, Céline Cosseau
Software Mentions: 1
Published: over 11 years ago

10.12688/wellcomeopenres.16171.2

Approaches to minimising the epidemiological impact of sources of systematic and random variation that may affect biochemistry assay data in UK Biobank
Cited by: 23
Author(s): Naomi E. Allen, Matthew Arnold, Sarah Parish, Michael Hill, Simon Sheard, Howard Callen, Daniel Fry, Stewart Moffat, Mark S. Gordon, Samantha Welsh, Paul Elliott, Rory Collins
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41416-018-0278-4

Phase 1 study of ARQ 761, a β-lapachone analogue that promotes NQO1-mediated programmed cancer cell necrosis
Cited by: 61
Author(s): David E. Gerber, Muhammad Shaalan Beg, Farjana J. Fattah, Arthur E. Frankel, Oluwatomilade Fatunde, Yull Arriaga, Jonathan E. Dowell, Ajit Kumar Bisen, Richard D. Leff, Claudia Meek, William C. Putnam, Raja Reddy Kallem, Indhumathy Subramaniyan, Ying Dong, J. Bolluyt, Venetia Sarode, Xin Luo, Yang Xie, Brian Schwartz, David A. Boothman
Software Mentions: 1
Published: about 6 years ago

10.1186/1752-0509-4-46

Quantitative global studies of reactomes and metabolomes using a vectorial representation of reactions and chemical compounds
Cited by: 3
Author(s): Juan Carlos Triviño, Florencio Pazos
Software Mentions: 1
Published: over 14 years ago

10.1186/s12862-020-01668-7

Rapid size change associated with intra-island evolutionary radiation in extinct Caribbean “island-shrews”
Cited by: 8
Author(s): Roseina Woods, Samuel T. Turvey, Selina Brace, Christopher V. McCabe, Love Dalén, Emily J. Rayfield, Mark J. F. Brown, Ian Barnes
Software Mentions: 1
Published: over 4 years ago

10.1186/gb-2006-7-10-r101

Cited by: 86
Author(s): Andrew E. Teschendorff, Ali Naderi, Nuno L. Barbosa‐Morais, Sarah Pinder, Ian O. Ellis, Samuel Aparicio, James D. Brenton, Carlos Caldas
Software Mentions: 1
Published: almost 19 years ago

10.3390/genes10080620

Transcriptome Landscape Variation in the Genus Thymus
Cited by: 10
Author(s): Aboozar Soorni, Tahereh Borna, Ali Alemardan, Manohar Chakrabarti, Arthur G. Hunt, Aureliano Bombarely
Software Mentions: 1
Published: over 5 years ago

10.3390/genes9020065

lncRNA Gene Signatures for Prediction of Breast Cancer Intrinsic Subtypes and Prognosis
Cited by: 33
Author(s): Silu Zhang, Junqing Wang, Torumoy Ghoshal, Dawn Wilkins, Yin‐Yuan Mo, Yixin Chen, Yunyun Zhou
Software Mentions: 1
Published: almost 7 years ago

10.3389/fspor.2021.648126

Women's Rugby League: Positional Groups and Peak Locomotor Demands
Cited by: 4
Author(s): Cloe Cummins, Glen Charlton, David Paul, Kathleen Shorter, Simon Buxton, Johnpaul Caia, Alexander B. Murphy
Software Mentions: 1
Published: over 3 years ago

10.3389/fpls.2018.01938

The Analysis of Leaf Traits of Eight Ottelia Populations and Their Potential Ecosystem Functions in Karst Freshwaters in China
Cited by: 7
Author(s): Yu Cao, Liuyan Yang, Leah Nyawira Ndirangu, Wei Li, Ling Xian, Hong Jiang
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijerph18020699

Typologies of Family Functioning and 24-h Movement Behaviors
Cited by: 4
Author(s): Michelle D. Guerrero, Joel D. Barnes, Mark S. Tremblay, Laura Pulkki-Råbäck
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13028-018-0358-8

Retrospective analysis of insulin responses to standard dosed oral glucose tests (OGTs) via naso-gastric tubing towards definition of an objective cut-off value
Cited by: 16
Author(s): Tobias Warnken, Julien Delarocque, Svenja Schumacher, Korinna Huber, Karsten Feige
Software Mentions: 1
Published: almost 7 years ago

10.1186/gm537

Killer-cell Immunoglobulin-like Receptor gene linkage and copy number variation analysis by droplet digital PCR
Cited by: 33
Author(s): Chrissy h. Roberts, Wei Jiang, Jyothi Jayaraman, John Trowsdale, Martin J. Holland, James A. Traherne
Software Mentions: 1
Published: almost 11 years ago

10.3389/fphar.2020.00324

The Identification of Admixture Patterns Could Refine Pharmacogenetic Counseling: Analysis of a Population-Based Sample in Mexico
Cited by: 8
Author(s): José Jaime Martínez‐Magaña, Alma Delia Genis‐Mendoza, Jorge Ameth Villatoro Velázquez, Beatríz Camarena, Rubén Argüero Sánchez, Clara Fleiz, Marycarmen Bustos Gamiño, Esbehidy Reséndiz, Alejandro Aguilar, María Elena Medina‐Mora, Humberto Nicolini
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2016.00056

Metagenomic Analysis Reveals Symbiotic Relationship among Bacteria in Microcystis-Dominated Community
Cited by: 39
Author(s): Meili Xie, Mei Ren, Chong‐Ren Yang, Haisi Yi, Zhe Li, Tao Li, Jindong Zhao
Software Mentions: 1
Published: almost 9 years ago

10.1111/age.12369

Efficiency of genomic prediction for boar taint reduction in Danish Landrace pigs
Cited by: 7
Author(s): Boris Lukić, Ricardo Pong‐Wong, Suzanne Rowe, Dirk-Jan de Koning, Ingela Velander, Chris Haley, Alan Archibald, John Woolliams
Software Mentions: 1
Published: about 9 years ago

10.1037/abn0000235

Interpersonal callousness and co-occurring anxiety: Developmental validity of an adolescent taxonomy.
Cited by: 30
Author(s): Alan J. Meehan, Barbara Maughan, Charlotte A.M. Cecil, Edward D. Barker
Software Mentions: 1
Published: almost 8 years ago

10.1111/all.14058

Sputum microbiomic clustering in asthma and chronic obstructive pulmonary disease reveals a Haemophilus‐predominant subgroup
Cited by: 31
Author(s): Sarah Diver, Matt Richardson, Koirobi Haldar, Michael A Ghebre, Mohammadali Yavari Ramsheh, Mona Bafadhel, Dhananjay Desai, E. Suzanne Cohen, Paul Newbold, Laura Rapley, Paul Rugman, Ian Pavord, Richard May, Michael R. Barer
Software Mentions: 1
Published: about 5 years ago

10.3389/fnhum.2020.00316

Project DyAdd: Non-linguistic Theories of Dyslexia Predict Intelligence
Cited by: 2
Author(s): Marja Laasonen, Pekka Lahti-Nuuttila, Sami Leppämäki, Pekka Tani, Jan Wikgren, Hanna Harno, Henna Oksanen-Hennah, Emmanuel M. Pothos, Axel Cleeremans, Matthew W.G. Dye, Denis Cousineau, Laura Hokkanen
Software Mentions: 1
Published: over 4 years ago

10.1186/1756-0500-6-559

Fungal gene expression levels do not display a common mode of distribution
Cited by: 4
Author(s): Minou Nowrousian
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12940-016-0147-7

Toddler temperament and prenatal exposure to lead and maternal depression
Cited by: 33
Author(s): Annemarie Stroustrup, Hsiao‐Hsien Leon Hsu, Katherine Svensson, Lourdes Schnaas, Alejandra Cantoral, Maritsa Solano González, Mariana Torres-Calapiz, Chitra Amarasiriwardena, David C. Bellinger, Brent A. Coull, Martha M. Téllez-Rojo, Robert O. Wright, Rosalind J. Wright
Software Mentions: 1
Published: over 8 years ago

10.1128/JCM.01296-16

Comparative Genome Analysis and Global Phylogeny of the Toxin Variant Clostridium difficile PCR Ribotype 017 Reveals the Evolution of Two Independent Sublineages
Cited by: 47
Author(s): M. D. Cairns, Mark D. Preston, Christopher D. Hall, Dale N. Gerding, Peter M. Hawkey, Hiroo Kato, H. Kim, Ed J. Kuijper, Trevor D. Lawley, Hanna Pituch, Sharon J. Reid, Brian Kullin, Thomas V. Riley, Katie Solomon, Pei-Jane Tsai, J. Scott Weese, Richard A. Stabler, Brendan W. Wren
Software Mentions: 1
Published: over 7 years ago

10.1128/JCM.00144-17

Detection of Emerging Vaccine-Related Polioviruses by Deep Sequencing
Cited by: 13
Author(s): Malaya K. Sahoo, Marisa Holubar, ChunHong Huang, Alisha Mohamed-Hadley, Yuanyuan Liu, Jesse J. Waggoner, Stephanie B. Troy, Ma. de Lourdes García-García, Leticia Ferreyra-Reyes, Yvonne Maldonado, Benjamin A. Pinsky
Software Mentions: 1
Published: over 7 years ago

10.3390/e22030270

Model Selection in a Composite Likelihood Framework Based on Density Power Divergence
Cited by: 4
Author(s): Elena Castilla, Nirian Martín, K. Zografos
Software Mentions: 1
Published: over 4 years ago

10.1002/dys.1629

Are children with developmental dyslexia all the same? A cluster analysis with more than 300 cases
Cited by: 19
Author(s): David Giofrè, Enrico Toffalini, Serena Provazza, Antonio Calcagnì, Gianmarco Altoè, Daniel J. Roberts
Software Mentions: 1
Published: over 5 years ago

Projects: cran: mclust

Papers Mentioning mclust 297