Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: mclust

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/mclust

Gaussian Mixture Modelling for Model-Based Clustering, Classification, and Density Estimation
81 versions
Latest release: about 2 years ago
183 dependent packages
61,361 downloads last month

Papers Mentioning mclust 297

10.7717/peerj.3334
<i>pathVar:</i>a new method for pathway-based interpretation of gene expression variability
Cited by: 6
Author(s): Laurence de Torrenté, Stephanie M. Zimmerman, Deanne Taylor, Yu Hasegawa, Christine A. Wells, Jessica C. Mar
Software Mentions: 4
Published: over 7 years ago
10.1186/s12866-020-02052-7
MALDI-TOF mass spectrometry for sub-typing of Streptococcus pneumoniae
Cited by: 6
Author(s): Sivkheng Kann, Sena Sao, Chanleakhena Phoeung, Youlet By, Juliet E. Bryant, Florence Komurian-Pradel, Vonthanak Saphonn, Monidarin Chou, Paul Turner
Software Mentions: 4
Published: almost 4 years ago
10.1186/s13059-020-02163-4
Chromatin regulates expression of small RNAs to help maintain transposon methylome homeostasis in Arabidopsis
Cited by: 55
Author(s): Ranjith Papareddy, Katalin Páldi, Subramanian Paulraj, Ping Kao, Stefan Lutzmayer, Michael D. Nodine
Software Mentions: 4
Published: about 4 years ago
10.3390/jof7090769
Defining Functions of Mannoproteins in Saccharomyces cerevisiae by High-Dimensional Morphological Phenotyping
Cited by: 2
Author(s): Farzan Ghanegolmohammadi, Hiroki Okada, Yaxuan Liu, Kaori Itto-Nakama, Shinsuke Ohnuki, A. S. Savchenko, Erfei Bi, Satoshi Yoshida, Yoshikazu Ohya
Software Mentions: 4
Published: about 3 years ago
10.1186/s12942-015-0017-5
Diet-related chronic disease in the northeastern United States: a model-based clustering approach
Cited by: 22
Author(s): Abby Flynt, Madeleine I. G. Daepp
Software Mentions: 4
Published: about 9 years ago
10.1371/journal.pgen.1006295
Effects of Gene Dose, Chromatin, and Network Topology on Expression in Drosophila melanogaster
Cited by: 35
Author(s): Hangnoh Lee, Dong-Yeon Cho, Cale Whitworth, Robert C. Eisman, Melissa A. S. Phelps, John Roote, Thomas C. Kaufman, Kevin R. Cook, Steven Russell, Teresa M. Przytycka, Brian Oliver
Software Mentions: 4
Published: about 8 years ago
10.1038/s41598-019-47046-2
SMAC, a computational system to link literature, biomedical and expression data
Cited by: 2
Author(s): S. Pirro, Emanuela Gadaleta, Andrea Galgani, Vittorio Colizzi, Claude Chelala
Software Mentions: 4
Published: over 5 years ago
10.1093/bib/bbaa014
Regression on imperfect class labels derived by unsupervised clustering
Cited by: 1
Author(s): Rasmus Froberg Brøndum, Thomas Yssing Michaelsen, Martin Bøgsted
Software Mentions: 4
Published: over 4 years ago
10.1093/bioinformatics/btz778
GPseudoClust: deconvolution of shared pseudo-profiles at single-cell resolution
Cited by: 5
Author(s): Magdalena E Strauß, Paul Kirk, John E. Reid, Lorenz Wernisch
Software Mentions: 4
Published: about 5 years ago
10.1002/evl3.167
Ecological speciation in European whitefish is driven by a large‐gaped predator
Cited by: 13
Author(s): Gunnar Öhlund, Mats Bodin, Karin Nilsson, Sven‐Ola Öhlund, Kenyon B. Mobley, Alan G. Hudson, Mikael Peedu, Åke Brännström, Pia Bartels, Kim Præbel, Catherine L. Hein, Petter Johansson, Göran Englund
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pgen.1008197
Novel protective and risk loci in hip dysplasia in German Shepherds
Cited by: 8
Author(s): Lea Mikkola, Saila Holopainen, Anu K. Lappalainen, Tiina Pessa‐Morikawa, Thomas Pulikotial Augustine, Meharji Arumilli, Marjo K. Hytönen, Osmo Hakosalo, Hannes Lohi, Antti Iivanainen
Software Mentions: 4
Published: over 5 years ago
10.1371/journal.pone.0232397
Correlation between musculoskeletal structure of the hand and primate locomotion: Morphometric and mechanical analysis in prehension using the cross- and triple-ratios
Cited by: 6
Author(s): Toshihiro Tamagawa, Torbjörn Lundh, Kenji Shigetoshi, Norihisa Nitta, Noritoshi Ushio, Toshiro Inubushi, Akihiko Shiino, Anders Karlsson, Takayuki Inoue, Yutaka Mera, Kodai Hino, Masaharu Komori, Shigehiro Morikawa, Shuji Sawajiri, Shigeyuki Naka, Satoru Honma, Tomoko Kimura, Yasuhiro Uchimura, Shunsuke Imai, Naoko Egi, Hiroki Otani, Jun Udagawa
Software Mentions: 3
Published: over 4 years ago
10.3389/fonc.2018.00032
Genetic Alterations in Essential Thrombocythemia Progression to Acute Myeloid Leukemia: A Case Series and Review of the Literature
Cited by: 7
Author(s): Jackline de Paula Ayres‐Silva, Martín Bonamino, Maria Emmerick Gouveia, Bárbara Monte-Mór, Diego F. Coutinho, Adelmo Daumas, Cristiana Solza, Esteban Braggio, Ilana Zalcberg
Software Mentions: 3
Published: almost 7 years ago
10.1186/s12862-016-0659-3
Bayesian species delimitation in Pleophylla chafers (Coleoptera) – the importance of prior choice and morphology
Cited by: 29
Author(s): Jonas Eberle, Rachel C. M. Warnock, Dirk Ahrens
Software Mentions: 3
Published: over 8 years ago
10.1371/journal.pone.0240356
Perceptual holistic color combination analysis of Papilionidae butterflies as aesthetic objects
Cited by: 1
Author(s): Erina Kakehashi, Keiichi Muramatsu, Hiroki Hibino
Software Mentions: 3
Published: about 4 years ago
10.1038/s41598-017-03847-x
Quantitative modelling of hip fracture trends in 14 European countries: testing variations of a shared reversal over time
Cited by: 19
Author(s): Raquel Lucas, Ana Martins, Mílton Severo, Poliana Silva, Teresa Monjardino, Rita Gaio, Cyrus Cooper, Henrique Barros
Software Mentions: 3
Published: over 7 years ago
10.1186/1471-2148-13-206
Electrophoretic mobility confirms reassortment bias among geographic isolates of segmented RNA phages
Cited by: 19
Author(s): Samuel L. Díaz‐Muñoz, Olivier Tenaillon, Daniel H. Goldhill, Kristen Brao, Paul Turner, Lin Chao
Software Mentions: 3
Published: almost 12 years ago
10.1002/evl3.248
Thermal tolerance and preference are both consistent with the clinal distribution of house fly proto-Y chromosomes
Cited by: 5
Author(s): Pablo J. Delclós, Kiran Adhikari, Oluwatomi Hassan, Jessica Cambric, Anna G. Matuk, Rebecca I. Presley, Jessica J. Tran, Vyshnika Sriskantharajah, Richard P. Meisel
Software Mentions: 3
Published: about 3 years ago
10.3390/cancers12113389
Beyond DNA Repair: DNA-PKcs in Tumor Metastasis, Metabolism and Immunity
Cited by: 18
Author(s): Haitang Yang, Feng Yao, Thomas Marti, Ralph A. Schmid, Ren‐Wang Peng
Software Mentions: 3
Published: about 4 years ago
10.1186/1471-2148-10-175
Algorithmic approaches to aid species' delimitation in multidimensional morphospace
Cited by: 50
Author(s): Thomas H. G. Ezard, Paul Nicholas Pearson, Andy Purvis
Software Mentions: 3
Published: almost 15 years ago
10.1093/bioinformatics/btx322
Molecular heterogeneity at the network level: high-dimensional testing, clustering and a TCGA case study
Cited by: 18
Author(s): Nicolas Städler, Frank Dondelinger, Steven M. Hill, Rehan Akbani, Yiling Lu, Gordon B. Mills, Sach Mukherjee
Software Mentions: 3
Published: over 7 years ago
10.1186/s12859-017-1970-8
2D–EM clustering approach for high-dimensional data through folding feature vectors
Cited by: 7
Author(s): Alok Sharma, Piotr J. Kamola, Tatsuhiko Tsunoda
Software Mentions: 3
Published: almost 7 years ago
10.1186/bcr3462
Estrogen receptor negative/progesterone receptor positive breast cancer is not a reproducible subtype
Cited by: 126
Author(s): Marco M. Hefti, Rong Hu, Nicholas W. Knoblauch, Laura C. Collins, Benjamin Haibe‐Kains, Rulla M. Tamimi, Andrew H. Beck
Software Mentions: 3
Published: over 11 years ago
10.1093/bioinformatics/btu436
Multi-factor data normalization enables the detection of copy number aberrations in amplicon sequencing data
Cited by: 95
Author(s): Valentina Boeva, Tatiana Popova, Maxime Lienard, Sébastien Toffoli, Maud Kamal, Christophe Le Tourneau, David Gentien, Nicolas Servant, Pierre Gestraud, Thomas Rio Frio, Philippe Hupé, Emmanuel Barillot, Jean-François Laes
Software Mentions: 3
Published: over 10 years ago
10.1016/j.mambio.2018.04.002
Exploring Rattus praetor (Rodentia, Muridae) as a possible species complex using geometric morphometrics on dental morphology
Cited by: 6
Author(s): Ardern Hulme-Beaman, Thomas Cucchi, Allowen Evin, Jeremy B. Searle, Keith Dobney
Software Mentions: 3
Published: about 6 years ago
10.1007/s11306-016-1124-4
Large-scale untargeted LC-MS metabolomics data correction using between-batch feature alignment and cluster-based within-batch signal intensity drift correction
Cited by: 120
Author(s): Carl Brunius, Lin Shi, Rikard Landberg
Software Mentions: 3
Published: about 8 years ago
10.1074/mcp.RA120.002227
Peptidomics-Driven Strategy Reveals Peptides and Predicted Proteases Associated With Oral Cancer Prognosis
Cited by: 9
Author(s): Leandro Xavier Neves, Daniela Campos Granato, Ariane F. Busso-Lopes, Carolina Moretto Carnielli, Fabio M. de Sá Patroni, Tatiane De Rossi, Ana Karina de Oliveira, Ana Carolina Prado Ribeiro, Thaís Bianca Brandão, André Nimtz Rodrigues, Pammela A. Lacerda, Miyuki Uno, Nilva K. Cervigne, Alan Roger Santos‐Silva, Luiz Paulo Kowalski, Márcio Ajudarte Lopes, Adriana Franco Paes Leme
Software Mentions: 3
Published: almost 4 years ago
10.1016/j.mcpro.2021.100118
A Reductionist Approach Using Primary and Metastatic Cell–Derived Extracellular Vesicles Reveals Hub Proteins Associated with Oral Cancer Prognosis
Cited by: 10
Author(s): Ariane F. Busso-Lopes, Carolina Moretto Carnielli, Flávia Vischi Winck, Fábio Malta de Sá Patroni, Ana Karina de Oliveira, Daniela Campos Granato, Rute Alves Pereira e Costa, Romênia R. Domingues, Bianca Alves Pauletti, Diego Mauricio Riaño-Pachón, Juliana Aparecida Aricetti, Camila Caldana, Edgard Graner, Ricardo D. Coletta, Kelly A. Dryden, Jay W. Fox, Adriana Franco Paes Leme
Software Mentions: 3
Published: almost 4 years ago
10.1002/ijc.32384
Transcriptomic profiling reveals three molecular phenotypes of adenocarcinoma at the gastroesophageal junction
Cited by: 15
Author(s): Jan Bornschein, Lorenz Wernisch, Maria Secrier, Ahmad Miremadi, Juliane Perner, Shona MacRae, Maria O’Donovan, Richard Newton, Suraj Menon, Lawrence Bower, Matthew Eldridge, Ginny Devonshire, Calvin Cheah, Richard Turkington, Richard Hardwick, Michael Selgrad, Marino Venerito, Peter Malfertheiner, Rebecca C. Fitzgerald
Software Mentions: 3
Published: over 5 years ago
10.1186/s12859-015-0689-7
Finite mixture clustering of human tissues with different levels of IGF-1 splice variants mRNA transcripts
Cited by: 8
Author(s): Michele Pelosi, Marco Alfò, Francesca Martella, Elisa Pappalardo, Antonio Musarò
Software Mentions: 3
Published: about 9 years ago
10.7717/peerj.5773
Unimodal head-width distribution of the European eel (<i>Anguilla anguilla</i> L.) from the Zeeschelde does not support disruptive selection
Cited by: 4
Author(s): Pieterjan Verhelst, Jens De Meyer, Jan Reubens, Johan Coeck, Peter Goethals, Tom Moens, Ans Mouton
Software Mentions: 3
Published: about 6 years ago
10.1186/1471-2105-8-166
GOSim – an R-package for computation of information theoretic GO similarities between terms and gene products
Cited by: 178
Author(s): Holger Fröhlich, N. Speer, Annemarie Poustka, Tim Beißbarth
Software Mentions: 3
Published: over 17 years ago
10.2196/publichealth.6577
Filtering Entities to Optimize Identification of Adverse Drug Reaction From Social Media: How Can the Number of Words Between Entities in the Messages Help?
Cited by: 30
Author(s): Redhouane Abdellaoui, Stéphane Schück, Nathalie Texier, Anita Burgun
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pcbi.1006507
Reconciling high-throughput gene essentiality data with metabolic network reconstructions
Cited by: 21
Author(s): Anna S. Blazier, Jason A. Papin
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pgen.1003820
The Genome and Development-Dependent Transcriptomes of Pyronema confluens: A Window into Fungal Evolution
Cited by: 80
Author(s): Stefanie Traeger, Florian Altegoer, Michael Freitag, Toni Gabaldón, Frank Kempken, Abhishek Kumar, Marina Marcet‐Houben, Stefanie Pöggeler, Jason E. Stajich, Minou Nowrousian
Software Mentions: 3
Published: about 11 years ago
10.1128/JVI.01367-20
Severe Human Lassa Fever Is Characterized by Nonspecific T-Cell Activation and Lymphocyte Homing to Inflamed Tissues
Cited by: 12
Author(s): Julia R Port, David M. Wozniak, Lisa Oestereich, Elisa Pallasch, Beate Becker-Ziaja, Jonas Müller, Monika Rottstegge, Catherine Olal, Sergio Gómez‐Medina, Jennifer Oyakhliome, Yemisi Ighodalo, Emmanuel Omomoh, Thomas Olokor, Donatus I Adomeh, Danny Asogun, Ephraim Ogbani-Emovon, Kristin Hartmann, Susanne Krasemann, Emily V Nelson, Beatriz Escudero-Pérez, Anita K. McElroy, Stephan Günther, César Muñoz‐Fontela
Software Mentions: 3
Published: about 4 years ago
10.1038/s41598-021-84945-9
Individuals with dyslexia use a different visual sampling strategy to read text
Cited by: 20
Author(s): Léon Franzen, Zoey Stark, Aaron P. Johnson
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0174175
Building the road to a regional zoonoses strategy: A survey of zoonoses programmes in the Americas
Cited by: 23
Author(s): Melody Maxwell, Mary H. Freire de Carvalho, Armando E. Hoet, Marco Antonio Natal Vigilato, Júlio César Augusto Pompei, Ottorino Cosivi, Victor Del Rio Vilas
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-020-69026-7
Unveiling functional heterogeneity in breast cancer multicellular tumor spheroids through single-cell RNA-seq
Cited by: 25
Author(s): Erick Andrés Muciño-Olmos, Aarón Vázquez-Jiménez, Ugo Avila-Ponce de León, Meztli Matadamas-Guzmán, Vilma Maldonado, Tayde López-Santaella, Abrahan Hernández‐Hernández, Osbaldo Reséndis-Antonio
Software Mentions: 3
Published: over 4 years ago
10.1186/gb-2012-13-12-r113
Assessing telomeric DNA content in pediatric cancers using whole-genome sequencing data
Cited by: 29
Author(s): Matthew Parker, Xiang Chen, Armita Bahrami, James Dalton, Michael Rusch, Gang Wu, John Easton, Nai Kong V. Cheung, Michael A. Dyer, Elaine R. Mardis, Richard K. Wilson, Charles G. Mullighan, Richard J. Gilbertson, Suzanne J. Baker, Gerard P. Zambetti, David W. Ellison, James R. Downing, Jinghui Zhang
Software Mentions: 3
Published: almost 13 years ago
10.1186/s12711-020-00534-w
Genotype calling of triploid offspring from diploid parents
Cited by: 5
Author(s): Kim Erik Grashei, Jørgen Ødegård, T.H.E. Meuwissen
Software Mentions: 3
Published: over 4 years ago
10.1186/s12859-016-1109-3
SCOUP: a probabilistic model based on the Ornstein–Uhlenbeck process to analyze single-cell expression data during differentiation
Cited by: 49
Author(s): Hirotaka Matsumoto, Hisanori Kiryu
Software Mentions: 3
Published: over 8 years ago
10.12688/gatesopenres.13029.2
Identifying population segments for effective intervention design and targeting using unsupervised machine learning: an end-to-end guide
Cited by: 12
Author(s): Elisabeth Engl, Peter Smittenaar, Sema K. Sgaier
Software Mentions: 3
Published: about 5 years ago
10.1038/s41598-020-57432-w
Distribution Optimization: An evolutionary algorithm to separate Gaussian mixtures
Cited by: 14
Author(s): F. Javier Lerch, Alfred Ultsch, Jörn Lötsch
Software Mentions: 3
Published: almost 5 years ago
10.1186/s12864-021-07649-4
Disentangling the aging gene expression network of termite queens
Cited by: 6
Author(s): José Manuel Monroy Kuhn, Karen Meusemann, Judith Korb
Software Mentions: 3
Published: over 3 years ago
10.1534/g3.114.013748
Quantitative Trait Locus Mapping Methods for Diversity Outbred Mice
Cited by: 183
Author(s): Daniel M. Gatti, Karen L. Svenson, Andrey A. Shabalin, Long Yang Wu, William Valdar, Petr Šimeček, Neal Goodwin, Riyan Cheng, Daniel Pomp, Abraham A. Palmer, Elissa J. Chesler, Karl W. Broman, Gary A. Churchill
Software Mentions: 3
Published: about 10 years ago
10.1371/journal.pone.0253219
Identify specific gene pairs for subarachnoid hemorrhage based on wavelet analysis and genetic algorithm
Cited by: 0
Author(s): Pengcheng Zhao, Shaonian Xu, Zhenshan Huang, Peng Deng, Yongming Zhang
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0191925
Effects of resource-dependent cannibalism on population size distribution and individual life history in a case-bearing caddisfly
Cited by: 6
Author(s): Jun-ichi Okano, Noboru Okuda
Software Mentions: 3
Published: almost 7 years ago
10.3389/fpsyg.2020.606334
Service-Learning and Chinese College Students' Knowledge Transfer Development
Cited by: 2
Author(s): Cong Wang, Wang Yan, Fan Guo, Yulan Li, Meilin Yao
Software Mentions: 3
Published: almost 4 years ago
10.1007/s10661-015-4994-4
Cluster categorization of urban roads to optimize their noise monitoring
Cited by: 30
Author(s): G Zambon, R. Benocci, Giovanni Brambilla
Software Mentions: 3
Published: almost 9 years ago
10.3389/fpsyg.2015.01881
Processing Rhythmic Pattern during Chinese Sentence Reading: An Eye Movement Study
Cited by: 7
Author(s): Yingwei Luo, Yunyan Duan, Xiaolin Zhou
Software Mentions: 3
Published: almost 9 years ago
10.1186/1471-2407-10-576
Identification of differentially expressed genes using an annealing control primer system in stage III serous ovarian carcinoma
Cited by: 96
Author(s): Yun Sook Kim, Jin Hwan, Seog Nyeon Bae, Dong Han Bae, Woong Shick Ahn
Software Mentions: 3
Published: about 14 years ago
10.1371/journal.ppat.0030077
Epigenomic Modifications Predict Active Promoters and Gene Structure in Toxoplasma gondii
Cited by: 106
Author(s): Mathieu Gissot, Krystyna A. Kelly, James W. Ajioka, John M. Greally, Kami Kim
Software Mentions: 3
Published: over 17 years ago
10.1371/journal.pone.0093350
Dealing with Consumer Differences in Liking during Repeated Exposure to Food; Typical Dynamics in Rating Behavior
Cited by: 18
Author(s): Jelle R. Dalenberg, Luca Nanetti, Remco Renken, René A. de Wijk, Gert J. Ter Horst
Software Mentions: 3
Published: over 10 years ago
10.1371/journal.pone.0038230
Visualization of Genomic Changes by Segmented Smoothing Using an L0 Penalty
Cited by: 22
Author(s): Ralph C. A. Rippe, Jacqueline J. Meulman, Paul H.C. Eilers
Software Mentions: 3
Published: over 12 years ago
10.3389/fpls.2021.708286
Network Inference of Transcriptional Regulation in Germinating Low Phytic Acid Soybean Seeds
Cited by: 1
Author(s): Lindsay C. DeMers, Victor Raboy, Li Song, M. A. Saghai Maroof
Software Mentions: 3
Published: about 3 years ago
10.1371/journal.pone.0231658
A transcriptional regulatory network of Rsv3-mediated extreme resistance against Soybean mosaic virus
Cited by: 8
Author(s): Lindsay C. DeMers, Neelam Redekar, Aardra Kachroo, S. A. Tolin, Li Song, M. A. Saghai Maroof
Software Mentions: 3
Published: over 4 years ago
10.1093/gbe/evu199
Comparative Genomics of Saccharomyces cerevisiae Natural Isolates for Bioenergy Production
Cited by: 39
Author(s): Dana J. Wohlbach, Nikolay Rovinskiy, Jeffrey A. Lewis, Maria Sardi, Wendy Schackwitz, Joel Martin, Shweta Deshpande, Christopher Daum, Anna Lipzen, Trey K. Sato, Audrey P. Gasch
Software Mentions: 3
Published: about 10 years ago
10.3389/fphys.2019.01276
Anthropometric Clusters of Competitive Cyclists and Their Sprint and Endurance Performance
Cited by: 19
Author(s): Stephan van der Zwaard, C.J. de Ruiter, Richard T. Jaspers, Jos J. de Koning
Software Mentions: 3
Published: about 5 years ago
10.1371/journal.pone.0199428
Using Approximate Bayesian Computation to infer sex ratios from acoustic data
Cited by: 9
Author(s): Lisa Lehnen, Wigbert Schorcht, Inken Karst, Martin Biedermann, Gerald Kerth, Sébastien J. Puechmaille
Software Mentions: 3
Published: over 6 years ago
10.1371/journal.pone.0158523
Social Complexification and Pig (Sus scrofa) Husbandry in Ancient China: A Combined Geometric Morphometric and Isotopic Approach
Cited by: 40
Author(s): Thomas Cucchi, Lingling Dai, Marie Balasse, Chen Zhao, Gao Jiang-tao, Yaowu Hu, Jing Yuan, Jean‐Denis Vigne
Software Mentions: 3
Published: over 8 years ago
10.3389/fpls.2018.00203
The Domestication of the Amazon Tree Grape (Pourouma cecropiifolia) Under an Ecological Lens
Cited by: 10
Author(s): Hermísia Coêlho Pedrosa, Charles R. Clement, Juliana Schietti
Software Mentions: 2
Published: over 6 years ago
10.1186/s13195-018-0423-6
The impact of transcranial magnetic stimulation on diagnostic confidence in patients with Alzheimer disease
Cited by: 36
Author(s): Alberto Benussi, Antonella Alberici, Clarissa Ferrari, Valentina Cantoni, Valentina Dell’Era, Rosanna Turrone, Maria Sofia Cotelli, Giuliano Binetti, Barbara Paghera, Giacomo Koch, Alessandro Padovani, Barbara Borroni
Software Mentions: 2
Published: about 6 years ago
10.1186/s13195-019-0555-3
Transcranial magnetic stimulation and amyloid markers in mild cognitive impairment: impact on diagnostic confidence and diagnostic accuracy
Cited by: 16
Author(s): Alessandro Padovani, Alberto Benussi, Maria Sofia Cotelli, Clarissa Ferrari, Valentina Cantoni, Valentina Dell’Era, Rosanna Turrone, Barbara Paghera, Barbara Borroni
Software Mentions: 2
Published: almost 5 years ago
10.1002/ajb2.1514
Phylogeny and multiple independent whole‐genome duplication events in the Brassicales
Cited by: 25
Author(s): Makenzie E. Mabry, Julia M. Brose, Paul D. Blischak, Brittany L. Sutherland, Wade Dismukes, Christopher A. Bottoms, Patrick P. Edger, Jacob D. Washburn, Hong An, Jocelyn C. Hall, Michael R. McKain, Ihsan A. Al‐Shehbaz, Michael S. Barker, M. Eric Schranz, Gavin C. Conant, J. Chris Pires
Software Mentions: 2
Published: over 4 years ago
10.1128/AAC.00265-17
High-Resolution Melting Analysis for Rapid Detection of Sequence Type 131 Escherichia coli
Cited by: 12
Author(s): Lucas Harrison, Nancy D. Hanson
Software Mentions: 2
Published: over 7 years ago
10.1192/bjo.2020.12
Transdiagnostic neurocognitive subgroups and functional course in young people with emerging mental disorders: a cohort study
Cited by: 16
Author(s): Jacob J. Crouse, Kate M. Chitty, Frank Iorfino, Joanne S. Carpenter, Django White, Alissa Nichles, Natalia Zmicerevska, Ashleigh M. Tickell, Rico S.C. Lee, Sharon L. Naismith, Elizabeth Scott, Jan Scott, Daniel F. Hermens, Ian B. Hickie
Software Mentions: 2
Published: over 4 years ago
10.1186/1471-2105-11-158
Integrating gene expression and GO classification for PCA by preclustering
Cited by: 17
Author(s): Jorn R. de Haan, Ester Piek, René C. van Schaik, Jacob de Vlieg, Susanne Bauerschmidt, L.M.C. Buydens, Ron Wehrens
Software Mentions: 2
Published: over 14 years ago
10.1186/s12859-019-3252-0
Investigating skewness to understand gene expression heterogeneity in large patient cohorts
Cited by: 11
Author(s): Benjamin V. Church, Henry T. Williams, Jessica C. Mar
Software Mentions: 2
Published: almost 5 years ago
10.1186/1471-2105-11-276
Comparison of scores for bimodality of gene expression distributions and genome-wide evaluation of the prognostic relevance of high-scoring genes
Cited by: 51
Author(s): Birte Hellwig, Jan G. Hengstler, Marcus Schmidt, Mathias Gehrmann, Wiebke Schormann, Jörg Rahnenführer
Software Mentions: 2
Published: over 14 years ago
10.1186/1471-2105-11-515
Comparative analysis of acute and chronic corticosteroid pharmacogenomic effects in rat liver: Transcriptional dynamics and regulatory structures
Cited by: 16
Author(s): Tung Nguyen, Richard R. Almon, Debra C. DuBois, William J. Jusko, Ioannis P. Androulakis
Software Mentions: 2
Published: about 14 years ago
10.1186/1471-2105-9-431
Probabilistic base calling of Solexa sequencing data
Cited by: 91
Author(s): Jacques Rougemont, Arnaud Amzallag, Christian Iseli, Laurent Farinelli, Ioannis Xenarios, Félix Naef
Software Mentions: 2
Published: about 16 years ago
10.1186/s12859-018-2556-9
Subject level clustering using a negative binomial model for small transcriptomic studies
Cited by: 7
Author(s): Qian Li, Janelle R Noel-Macdonnell, Devin C. Koestler, Ellen L. Goode, Brooke L. Fridley
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12915-019-0721-x
The X chromosome of the German cockroach, Blattella germanica, is homologous to a fly X chromosome despite 400 million years divergence
Cited by: 16
Author(s): Richard P. Meisel, Pablo J. Delclós, Judith R. Wexler
Software Mentions: 2
Published: almost 5 years ago
10.1186/s12863-017-0589-0
DArT, SNP, and SSR analyses of genetic diversity in Lolium perenne L. using bulk sampling
Cited by: 24
Author(s): Siyang Liu, Ulf Feuerstein, Wilbert Luesink, Sabine Schulze, Torben Asp, Bruno Studer, Heiko C. Becker, Klaus J. Dehmer
Software Mentions: 2
Published: almost 7 years ago
10.1186/s12864-017-4312-3
Weighted likelihood inference of genomic autozygosity patterns in dense genotype data
Cited by: 9
Author(s): Alexandra Blant, Michelle Kwong, Zachary A. Szpiech, Trevor J. Pemberton
Software Mentions: 2
Published: almost 7 years ago
10.1186/s12864-018-4922-4
Single cell RNA-seq data clustering using TF-IDF based methods
Cited by: 18
Author(s): Marmar Moussa, Ion Măndoiu
Software Mentions: 2
Published: over 6 years ago
10.1186/1756-0500-5-409
Biogenesis of protein bodies during vicilin accumulation in Medicago truncatula immature seeds
Cited by: 16
Author(s): Mona Abirached-Darmency, Fabrice Dessaint, Emilie Benlicha, Charles L. Schneider
Software Mentions: 2
Published: over 12 years ago
10.1186/s13040-016-0101-9
Principal component analysis based unsupervised feature extraction applied to budding yeast temporally periodic gene expression
Cited by: 32
Author(s): Y-h. Taguchi
Software Mentions: 2
Published: over 8 years ago
10.3390/biology8020046
Plasticity in Standard and Maximum Aerobic Metabolic Rates in Two Populations of an Estuarine Dependent Teleost, Spotted Seatrout (Cynoscion nebulosus)
Cited by: 6
Author(s): Jingwei Song, Richard W. Brill, Jan R. McDowell
Software Mentions: 2
Published: over 5 years ago
10.1186/s12938-016-0290-y
Feature visualization and classification for the discrimination between individuals with Parkinson’s disease under levodopa and DBS treatments
Cited by: 17
Author(s): Alessandro R. P. Machado, Hudson Capanema Zaidan, Ana Paula Souza Paixão, Guilherme Lopes Cavalheiro, Fábio Henrique Monteiro Oliveira, João Areis Ferreira Barbosa Júnior, Kheline Naves, Adriano Alves Pereira, Janser Moura Pereira, Nader Pouratian, Xiaoyi Zhuo, Andrew O’Keeffe, Justin Sharim, Yvette Bordelon, Laurice Yang, Marcus Fraga Vieira, Adriano O. Andrade
Software Mentions: 2
Published: almost 8 years ago
10.1186/s13058-019-1238-5
S100a4 upregulation in Pik3caH1047R;Trp53R270H;MMTV-Cre-driven mammary tumors promotes metastasis
Cited by: 4
Author(s): Wenlin Yuan, Leonard D. Goldstein, Steffen Durinck, Ying-Jiun Chen, Thong Tien Nguyen, Noelyn M. Kljavin, Ethan S. Sokol, Eric Stawiski, Benjamin Haley, James Ziai, Zora Modrušan, Somasekar Seshagiri
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41375-018-0043-y
Genomic profiling reveals spatial intra-tumor heterogeneity in follicular lymphoma
Cited by: 80
Author(s): Shamzah Araf, Jun Wang, Koorosh Korfi, Céline Pangault, Eleni Kotsiou, Ana Río-Machín, T. Rahim, James A. Heward, Andrew Clear, Sameena Iqbal, Jeff Davies, Peter Johnson, Maria Calaminici, Silvia Montoto, Rebecca Auer, Claude Chelala, John G. Gribben, Trevor A. Graham, Thierry Fest, Jude Fitzgibbon, Jessica Okosun
Software Mentions: 2
Published: almost 7 years ago
10.1186/1475-2875-8-229
FlexiChip package: an universal microarray with a dedicated analysis software for high-thoughput SNPs detection linked to anti-malarial drug resistance
Cited by: 12
Author(s): Nicolas Steenkeste, Marie‐Agnès Dillies, Nimol Khim, Odile Sismeiro, Sophy Chy, Pharath Lim, Andreas Crameri, Christiane Bouchier, Odile Mercereau–Puijalon, Hans‐Peter Beck, Mallika Imwong, Arjen M. Dondorp, Duong Socheat, Christophe Rogier, Jean‐Yves Coppée, Frédéric Ariey
Software Mentions: 2
Published: about 15 years ago
10.1186/s13071-020-04017-1
Patterns of helminth infection in Kenyan elephant populations
Cited by: 4
Author(s): Edward King’ori, Vincent Obanda, Patrick I. Chiyo, Ramón C. Soriguer, P. Morrondo, Samer Angelone
Software Mentions: 2
Published: over 4 years ago
10.7717/peerj.7332
Taxonomic reassessment of the genus <i>Dichotomius</i> (Coleoptera: Scarabaeinae) through integrative taxonomy
Cited by: 10
Author(s): Carolina Pardo‐Díaz, Alejandro Lopera Toro, Sergio Andrés Peña Tovar, Rodrigo Sarmiento-Garcés, Melissa Sánchez Herrera, Camilo Salazar
Software Mentions: 2
Published: over 5 years ago
10.7717/peerj.9126
An improved similarity-based approach to predicting and mapping soil organic carbon and soil total nitrogen in a coastal region of northeastern China
Cited by: 4
Author(s): Shuai Wang, Kabindra Adhikari, Qianlai Zhuang, Zijiao Yang, Xinxin Jin, Qiubing Wang, Zhenxing Bian
Software Mentions: 2
Published: over 4 years ago
10.3390/plants10040693
Transcriptome Analysis Reveals Genes of Flooding-Tolerant and Flooding-Sensitive Rapeseeds Differentially Respond to Flooding at the Germination Stage
Cited by: 3
Author(s): Jijun Li, Sidra Iqbal, Yuting Zhang, Yahui Chen, Zengdong Tan, Usman Ali, Liang Guo
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pcbi.1003087
Combinatorial Clustering of Residue Position Subsets Predicts Inhibitor Affinity across the Human Kinome
Cited by: 14
Author(s): Drew Bryant, Mark Moll, Paul W. Finn, Lydia E. Kavraki
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pgen.1007186
Identifying and exploiting trait-relevant tissues with multiple functional annotations in genome-wide association studies
Cited by: 27
Author(s): Xingjie Hao, Ping Zeng, Shujun Zhang, Xiang Zhou
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0169428
Forest Connectivity Regions of Canada Using Circuit Theory and Image Analysis
Cited by: 11
Author(s): David Pelletier, Marc-Élie Lapointe, Michael A. Wulder, Joanne C. White, Jeffrey A. Cardille
Software Mentions: 2
Published: almost 8 years ago
10.1371/journal.pone.0195286
Metrics and methods for characterizing dairy farm intensification using farm survey data
Cited by: 35
Author(s): Alejandra M. Gonzalez-Mejia, David Styles, Paul N. Wilson, James Gibbons
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0092192
Performance Comparison between Rapid Sequencing Platforms for Ultra-Low Coverage Sequencing Strategy
Cited by: 25
Author(s): Sheng‐Pei Chen, Sheng Li, Wen Xie, Xuchao Li, Chunlei Zhang, Hanyang Jiang, Jing Zheng, Xiaoyu Pan, Hancheng Zheng, Jia Sophie Liu, Yongqiang Deng, Fang Chen, Hui Jiang
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pone.0167377
Three Boundary Conditions for Computing the Fixed-Point Property in Binary Mixture Data
Cited by: 6
Author(s): Leendert van Maanen, Joaquina Couto, Maël Lebreton
Software Mentions: 2
Published: almost 8 years ago
10.1371/journal.pone.0134540
A Linear Mixed Model Spline Framework for Analysing Time Course ‘Omics’ Data
Cited by: 44
Author(s): Jasmin Straube, Alain-Dominique Gorse, Bevan Emma Huang, Kim‐Anh Lê Cao
Software Mentions: 2
Published: about 9 years ago
10.1371/journal.pone.0159403
A Spatially Explicit Dual-Isotope Approach to Map Regions of Plant-Plant Interaction after Exotic Plant Invasion
Cited by: 14
Author(s): Christine Hellmann, Christiane Werner, Jens Oldeland
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0039786
Characterization of miRNAs in Response to Short-Term Waterlogging in Three Inbred Lines of Zea mays
Cited by: 74
Author(s): Zhijie Liu, Sunita Kumari, Lifang Zhang, Yanyan Zheng, Doreen Ware
Software Mentions: 2
Published: over 12 years ago
10.1371/journal.pone.0204627
Optimal clustering under uncertainty
Cited by: 3
Author(s): Lori A. Dalton, Marco E. Benalcázar, Edward R. Dougherty
Software Mentions: 2
Published: about 6 years ago
10.1371/journal.pone.0226095
Reproductive life-history strategies in a species-rich assemblage of Amazonian electric fishes
Cited by: 8
Author(s): Joseph C. Waddell, Steve M. Njeru, Yasmine M. Akhiyat, Benjamin Schachner, Ericka V. Correa-Roldán, William G. R. Crampton
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pone.0095714
The Near-Eastern Roots of the Neolithic in South Asia
Cited by: 43
Author(s): Kavita Gangal, Graeme R. Sarson, Anvar Shukurov
Software Mentions: 2
Published: over 10 years ago