cran: matlab | Projects | Ecosyste.ms: Papers

10.3390/metabo10040126

Comparing Targeted vs. Untargeted MS2 Data-Dependent Acquisition for Peak Annotation in LC–MS Metabolomics
Cited by: 26
Author(s): Isabel Ten-Doménech, Teresa Martínez-Sena, Marta Moreno-Torres, Juan Daniel Sanjuan-Herráez, José V. Castell, Anna Parra-Llorca, Máximo Vento, Guillermo Quintás, Julia Kuligowski
Software Mentions: 3
Published: over 4 years ago

10.1186/1532-429X-12-13

How do hypertrophic cardiomyopathy mutations affect myocardial function in carriers with normal wall thickness? Assessment with cardiovascular magnetic resonance
Cited by: 56
Author(s): Tjeerd Germans, Iris K. Rüssel, Marco J.W. Götte, Marieke Spreeuwenberg, Pieter A. Doevendans, Yigal M. Pinto, Rob J. van der Geest, Jolanda van der Velden, Arthur A.M. Wilde, Albert C. van Rossum
Software Mentions: 3
Published: over 14 years ago

10.1098/rspa.2019.0184

Oriented suspension mechanics with application to improving flow linear dichroism spectroscopy
Cited by: 0
Author(s): Gemma Cupples, D. J. Smith, Matthew R. Hicks, Rosemary Dyson
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0230790

The optimized algorithm based on machine learning for inverse kinematics of two painting robots with non-spherical wrist
Cited by: 1
Author(s): Xiaoqi Wang, Jing Cao, Lerui Chen, Heyu Hu
Software Mentions: 3
Published: over 4 years ago

10.1111/1365-2664.12689

Investigating the impacts of field‐realistic exposure to a neonicotinoid pesticide on bumblebee foraging, homing ability and colony growth
Cited by: 125
Author(s): Dara A. Stanley, Avery L. Russell, Sarah J. Morrison, Catherine Rogers, Nigel E. Raine
Software Mentions: 3
Published: over 8 years ago

10.1111/psyp.13714

The effects of age on resting‐state BOLD signal variability is explained by cardiovascular and cerebrovascular factors
Cited by: 42
Author(s): Kamen A. Tsvetanov, Richard Henson, P Simon Jones, Henk‐Jan Mutsaerts, Delia Fuhrmann, Lorraine K. Tyler, Cam‐CAN, James B. Rowe
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0114316

A Computational Study of Stimulus Driven Epileptic Seizure Abatement
Cited by: 96
Author(s): Peter Neal Taylor, Yujiang Wang, Marc Goodfellow, Justin Dauwels, Friederike Moeller, Ulrich Stephani, Gerold Baier
Software Mentions: 3
Published: almost 10 years ago

10.1121/1.4979055

Auditory salience using natural soundscapes
Cited by: 50
Author(s): Nicholas Huang, Mounya Elhilali
Software Mentions: 3
Published: over 7 years ago

10.1111/joa.12821

Pbx loss in cranial neural crest, unlike in epithelium, results in cleft palate only and a broader midface
Cited by: 19
Author(s): Ian Welsh, James Hart, Joel J. Brown, Karissa Hansen, Marcelo Rocha Marques, Robert Aho, Irina Grishina, Romulo Hurtado, Doris Herzlinger, Elisabetta Ferretti, María J. García-García, Licia Selleri
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-017-14687-0

Investigation of radiomic signatures for local recurrence using primary tumor texture analysis in oropharyngeal head and neck cancer patients
Cited by: 87
Author(s): Hesham Elhalawani, Aasheesh Kanwar, Abdallah S.R. Mohamed, Arica White, James Zafereo, Andrew Wong, Joel Berends, Shady Abohashem, Bowman Williams, Jeremy M. Aymard, Subha Perni, Jay A. Messer, Benjamin W. Warren, Bassem Youssef, Pei Yang, M.A.M. Meheissen, Mona Kamal, Baher Elgohari, Rachel B. Ger, Carlos Cárdenas, Xenia Fave, Lifei Zhang, D. Mackin, G. Elisabeta Marai, David M. Vock, Guadalupe Canahuate, Stephen Y. Lai, G. Brandon Gunn, Adam S. Garden, David I. Rosenthal, Laurence Edward Court, Clifton D. Fuller
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0229583

Optimized criteria for locomotion-based healthspan evaluation in C. elegans using the WorMotel system
Cited by: 11
Author(s): Areta Jushaj, Matthew A. Churgin, Bowen Yao, M. de la Torre, Christopher Fang-Yen, Liesbet Temmerman
Software Mentions: 3
Published: over 4 years ago

10.1074/mcp.RA119.001791

Large-scale Identification of N-linked Intact Glycopeptides in Human Serum using HILIC Enrichment and Spectral Library Search
Cited by: 35
Author(s): Qingbo Shu, Mengjie Li, Lian Shu, Zhiwu An, Jifeng Wang, Hao Lv, Ming Yang, Tao Cai, Tony Hu, Yan Fu, Fuquan Yang
Software Mentions: 3
Published: over 4 years ago

10.1121/1.5042759

Multisensory stimuli improve relative localisation judgments compared to unisensory auditory or visual stimuli
Cited by: 4
Author(s): Laura Freeman, Katherine C. Wood, Jennifer K. Bizley
Software Mentions: 3
Published: over 6 years ago

10.1002/1878-0261.12688

Pathological validation and prognostic potential of quantitative MRI in the characterization of pancreas cancer: preliminary experience
Cited by: 21
Author(s): Remy Klaassen, Anne Steins, Oliver J. Gurney‐Champion, Maarten F. Bijlsma, Geertjan van Tienhoven, Marc R. Engelbrecht, Casper H.J. van Eijck, Mustafa Suker, Johanna W. Wilmink, Marc G. Besselink, Olivier R. Busch, Onno J. de Boer, Marc J. van de Vijver, Gerrit K.J. Hooijer, Joanne Verheij, Jaap Stoker, Aart J. Nederveen, Hanneke W. M. van Laarhoven
Software Mentions: 3
Published: over 4 years ago

10.3390/ma13081887

A Novel Approach to Discrete Representative Volume Element Automation and Generation-DRAGen
Cited by: 11
Author(s): Manuel Henrich, Felix Pütz, Sebastian Münstermann
Software Mentions: 3
Published: over 4 years ago

10.1121/1.4982923

Input-output functions of the nonlinear-distortion component of distortion-product otoacoustic emissions in normal and hearing-impaired human ears
Cited by: 11
Author(s): Dennis Zelle, Lisa Lorenz, J Thiericke, Anthony W. Gummer, Ernst Dalhoff
Software Mentions: 3
Published: over 7 years ago

10.1002/1878-0261.12426

<scp>ADAM</scp> 9 contributes to vascular invasion in pancreatic ductal adenocarcinoma
Cited by: 32
Author(s): Victor Oginga Oria, Paul Lopatta, Tatjana Schmitz, Bogdan‐Tiberius Preca, Alexander Nyström, Catharina Conrad, Jörg W. Bartsch, Birte Kulemann, Jens Hoeppner, Jochen Maurer, Peter Bronsert, Oliver Schilling
Software Mentions: 3
Published: almost 6 years ago

10.15252/msb.20209895

Evaluating the Arrhenius equation for developmental processes
Cited by: 42
Author(s): Joseph Crapse, Nishant Pappireddi, Meera Gupta, Stanislav Y. Shvartsman, Eric Wieschaus, Martin Wühr
Software Mentions: 3
Published: over 3 years ago

10.1111/joa.13058

Myoarchitectural disarray of hypertrophic cardiomyopathy begins pre‐birth
Cited by: 33
Author(s): Patricia García-Cañadilla, Andrew C. Cook, Timothy J. Mohun, Onyedikachi Oji, Saskia Schlossarek, Lucie Carrier, William J. McKenna, James Moon, Gabriella Captur
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-69929-5

Fast Periodic Visual Stimulation indexes preserved semantic memory in healthy ageing
Cited by: 4
Author(s): Alexander Milton, Alesi Rowland, George Stothart, Philip Clatworthy, Catherine Pennington, Nina Kazanina
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0176172

Tracking disease progression by searching paths in a temporal network of biological processes
Cited by: 7
Author(s): Rajat Anand, Samrat Chatterjee
Software Mentions: 3
Published: over 7 years ago

10.1007/s00442-021-04925-8

Spatial scaling of plant and bird diversity from 50 to 10,000 ha in a lowland tropical rainforest
Cited by: 1
Author(s): Richard J. Hazell, Kryštof Chmel, Jan Riegert, Luda Paul, Brus Isua, Graham Kaina, Pavel Fibich, Kenneth Molem, Alan J. A. Stewart, Mika Peck, George D. Weiblen, Vojtêch Novotný
Software Mentions: 3
Published: over 3 years ago

10.3389/fpsyg.2017.01864

Likability’s Effect on Interpersonal Motor Coordination: Exploring Natural Gaze Direction
Cited by: 10
Author(s): Zhong Zhao, Robin N. Salesse, Ludovic Marín, Mathieu Gueugnon, Benoît G. Bardy
Software Mentions: 3
Published: about 7 years ago

10.7554/eLife.48964

Fibronectin is a smart adhesive that both influences and responds to the mechanics of early spinal column development
Cited by: 18
Author(s): Emilie Guillon, Debapratim Das, Dörthe Jülich, Abdel-Rahman Hassan, Hannah Geller, Scott A. Holley
Software Mentions: 3
Published: over 4 years ago

10.7554/eLife.01775

Single-molecule tracking of the transcription cycle by sub-second RNA detection
Cited by: 70
Author(s): Zhengjian Zhang, Andrey Revyakin, Jonathan B. Grimm, Luke D. Lavis, Robert Tjian
Software Mentions: 3
Published: almost 11 years ago

10.1093/gigascience/giaa133

Fractional ridge regression: a fast, interpretable reparameterization of ridge regression
Cited by: 22
Author(s): Ariel Rokem, Kendrick Kay
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0219460

Parameters of the crossing points between center of pressure and center of mass signals are potential markers of postural control efficiency
Cited by: 7
Author(s): Krzysztof Piotr Michalak, Anna Przekoracka-Krawczyk, Ryszard Naskrȩcki
Software Mentions: 3
Published: over 5 years ago

10.1186/s12880-016-0117-0

Efficient quantitative assessment of facial paralysis using iris segmentation and active contour-based key points detection with hybrid classifier
Cited by: 27
Author(s): Jocelyn B Barbosa, Kyubum Lee, Sunwon Lee, Bilal Ahmed Lodhi, Jae‐Gu Cho, Woo‐Keun Seo, Jaewoo Kang
Software Mentions: 3
Published: over 8 years ago

10.3389/fpsyg.2018.00228

Hot Speech and Exploding Bombs: Autonomic Arousal During Emotion Classification of Prosodic Utterances and Affective Sounds
Cited by: 7
Author(s): Rebecca Jürgens, Julia Fischer, Annekathrin Schacht
Software Mentions: 3
Published: over 6 years ago

10.3389/fnint.2016.00034

Patterns of Activity in the Human Frontal and Parietal Cortex Differentiate Large and Small Saccades
Cited by: 4
Author(s): Marie-Hélène Grosbras
Software Mentions: 3
Published: about 8 years ago

10.3389/fninf.2018.00059

A Novel, Fast, Reliable, and Data-Driven Method for Simultaneous Single-Trial Mining and Amplitude—Latency Estimation Based on Proximity Graphs and Network Analysis
Cited by: 0
Author(s): Stavros I. Dimitriadis, Lisa Brindley, Lisa Helen Evans, David Linden, Krish Devi Singh
Software Mentions: 3
Published: about 6 years ago

10.1002/2211-5463.12679

Network analysis of aging acceleration reveals systematic properties of 11 types of cancers
Cited by: 2
Author(s): Xiaoqiong Xia, Mengyu Zhou, Yan Hu, Sijia Li, Xianyi Sha, Yin Wang
Software Mentions: 3
Published: over 5 years ago

10.3389/fncom.2016.00057

A Neuronal Network Model for Pitch Selectivity and Representation
Cited by: 10
Author(s): Chengcheng Huang, John Rinzel
Software Mentions: 3
Published: over 8 years ago

10.1002/2211-5463.12876

Cardiac troponin and tropomyosin bind to F‐actin cooperatively, as revealed by fluorescence microscopy
Cited by: 3
Author(s): Christopher Solı́s, John M. Robinson
Software Mentions: 3
Published: over 4 years ago

10.3389/fnhum.2021.714256

Analysis-rcs-data: Open-Source Toolbox for the Ingestion, Time-Alignment, and Visualization of Sense and Stimulation Data From the Medtronic Summit RC+S System
Cited by: 13
Author(s): Kristin K. Sellers, Ro’ee Gilron, Juan Ansó, Kenneth H Louie, Prasad Shirvalkar, Edward F. Chang, Simon Little, Philip A. Starr
Software Mentions: 3
Published: over 3 years ago

10.1111/febs.14772

<scp>MAVS</scp> polymers smaller than 80 nm induce mitochondrial membrane remodeling and interferon signaling
Cited by: 15
Author(s): Ming‐Shih Hwang, Jérôme Boulanger, Jonathan D. Howe, Anna Albecka, Mathias Pasche, Leila Mureşan, Yorgo Modis
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pcbi.1007643

Heterogeneity coordinates bacterial multi-gene expression in single cells
Cited by: 13
Author(s): Yichao Han, Fuzhong Zhang
Software Mentions: 3
Published: almost 5 years ago

10.1002/2211-5463.12696

Sulfated polysaccharides interact with fibroblast growth factors and protect from denaturation
Cited by: 24
Author(s): Changye Sun, Mengxin Liu, Panwen Sun, Mingming Yang, Edwin A. Yates, Zhikun Guo, David G. Fernig
Software Mentions: 3
Published: over 5 years ago

10.1111/ejn.13724

Neural correlates of multisensory reliability and perceptual weights emerge at early latencies during audio-visual integration
Cited by: 15
Author(s): Stephanie Claire Boyle, Stephanie J. Kayser, Christoph Kayser
Software Mentions: 3
Published: about 7 years ago

10.1111/j.1460-9568.2010.07443.x

Investigating object representations during change detection in human extrastriate cortex
Cited by: 7
Author(s): D. Samuel Schwarzkopf, Juha Silvanto, Sharon Gilaie-Dotan, Geraint Rees
Software Mentions: 3
Published: about 14 years ago

10.3390/e22121358

Aerial Video Trackers Review
Cited by: 4
Author(s): Jinlu Jia, Zhenyi Lai, Yu-Rong Qian, Ziqiang Yao
Software Mentions: 3
Published: almost 4 years ago

10.1016/j.dib.2017.10.072

A multimodal dataset for authoring and editing multimedia content: The MAMEM project
Cited by: 13
Author(s): Spiros Nikolopoulos, Panagiotis C. Petrantonakis, Kostas Georgiadis, Fotis Kalaganis, Georgios Liaros, Ioulietta Lazarou, Kenneth R. Adam, Anastasios Papazoglou-Chalikias, Elisavet Chatzilari, Vangelis P. Oikonomou, Chandan Kumar, Raphael Menges, Steffen Staab, Daniel Müller, Korok Sengupta, Sevasti Bostantjopoulou, Zoe Katsarou, Gabi Zeilig, Meir Plotnik, Amihai Gotlieb, Racheli Kizoni, Sofia Fountoukidou, Jaap Ham, Dimitrios Athanasiou, Agnes Mariakaki, Dario Comanducci, Edoardo Sabatini, Walter Nisticò, Markus Plank, Ioannis Kompatsiaris
Software Mentions: 3
Published: almost 7 years ago

10.1155/2021/2807236

Research on the Undulatory Motion Mechanism of Seahorse Based on Dynamic Mesh
Cited by: 3
Author(s): Xinyu Quan, Ximing Zhao, Shijie Zhang, Jie Zhou, Nan Yu, Xuyan Hou
Software Mentions: 3
Published: about 3 years ago

10.1016/j.dib.2019.105035

Code and data on the processing of the pulsed-field gel electrophoresis images: A matlab script
Cited by: 1
Author(s): Ahmad Mohammadbeigi, Mohammad Rezaei, Naser Zohourian Sani, Nemat Soltani, Parviz Mohajeri
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pcbi.1000920

Latent Factor Analysis to Discover Pathway-Associated Putative Segmental Aneuploidies in Human Cancers
Cited by: 48
Author(s): Joseph E. Lucas, Hsiu‐Ni Kung, Jen‐Tsan Chi
Software Mentions: 3
Published: about 14 years ago

10.1002/brb3.1263

The roles of alpha oscillation in working memory retention
Cited by: 84
Author(s): Elvis Wianda, Bernhard Roß
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-018-5300-y

ACES: a machine learning toolbox for clustering analysis and visualization
Cited by: 1
Author(s): Jiangning Gao, Görel Sundström, Behrooz Torabi Moghadam, Neda Zamani, Manfred Grabherr
Software Mentions: 3
Published: almost 6 years ago

10.1016/j.cmpb.2020.105595

Automated extraction of auditory brainstem response latencies and amplitudes by means of non-linear curve registration
Cited by: 9
Author(s): Katrin Krumbholz, Alexander Hardy, Jessica de Boer
Software Mentions: 3
Published: about 4 years ago

10.1111/imm.12727

Structural and functional changes to lymph nodes in ageing mice
Cited by: 50
Author(s): Vivian Turner, Neil A. Mabbott
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0229408

An adjustable algal chloroplast plug-and-play model for genome-scale metabolic models
Cited by: 5
Author(s): Gunvor Røkke, Martin F. Hohmann‐Marriott, Eivind Almaas
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0171440

How important is thermodynamics for identifying elementary flux modes?
Cited by: 21
Author(s): Sabine Pérès, Mario Jolicœur, C. Moulin, Philippe Dague, Stefan Schuster
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pcbi.1007436

EAGLE: An algorithm that utilizes a small number of genomic features to predict tissue/cell type-specific enhancer-gene interactions
Cited by: 17
Author(s): Tianshun Gao, Jiang Qian
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0094694

FTSPlot: Fast Time Series Visualization for Large Datasets
Cited by: 3
Author(s): Michael Riss
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0193639

Evaluation of the Leap Motion Controller during the performance of visually-guided upper limb movements
Cited by: 40
Author(s): Ewa Niechwiej-Szwedo, David González, Mina Nouredanesh, James Tung
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pcbi.1007849

A mechanistic model of the BLADE platform predicts performance characteristics of 256 different synthetic DNA recombination circuits
Cited by: 2
Author(s): Jack Bowyer, Chloe Ding, Benjamin H. Weinberg, Wilson Wong, Declan G. Bates
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12938-018-0463-y

The FieldTrip-SimBio pipeline for EEG forward solutions
Cited by: 96
Author(s): Johannes Vorwerk, Robert Oostenveld, Maria Carla Piastra, Lilla Magyari, Carsten H. Wolters
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0078011

Novel Multiscale Modeling Tool Applied to Pseudomonas aeruginosa Biofilm Formation
Cited by: 64
Author(s): Matthew B. Biggs, Jason A. Papin
Software Mentions: 3
Published: about 11 years ago

10.1371/journal.pone.0257645

An approach to increase the power output of Karnafuli Hydroelectric Power Station: A step to sustainable development in Bangladesh’s energy sector
Cited by: 3
Author(s): Md. Farhad Hossain, Tahmidur Rahman, Abdullahil Mamun, Omar Bin Mannan, Md. Altaf‐Ul‐Amin
Software Mentions: 3
Published: about 3 years ago

10.1371/journal.pone.0080479

Comparison of EEG-Features and Classification Methods for Motor Imagery in Patients with Disorders of Consciousness
Cited by: 44
Author(s): Yvonne Höller, Jürgen Bergmann, Aljoscha Thomschewski, Martin Kronbichler, Peter Höller, Julia Sophia Crone, Elisabeth Schmid, Kevin Butz, Raffaele Nardone, Eugen Trinka
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pone.0114145

A GPU-Based Implementation of the Firefly Algorithm for Variable Selection in Multivariate Calibration Problems
Cited by: 16
Author(s): Lauro Cássio Martins de Paula, Anderson S. Soares, Telma Woerle de Lima, Alexandre C. B. Delbem, Clarimar J. Coelho, Arlindo Rodrigues Galvão Filho
Software Mentions: 3
Published: almost 10 years ago

10.1371/journal.pone.0237750

Prediction of hepatitis E using machine learning models
Cited by: 20
Author(s): Yanhui Guo, Yi Feng, Fuli Qu, Li Zhang, Bingyu Yan, Jingjing Lv
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pcbi.1000489

Interpreting Expression Data with Metabolic Flux Models: Predicting Mycobacterium tuberculosis Mycolic Acid Production
Cited by: 367
Author(s): Caroline Colijn, Aaron Brandes, Jeremy Zucker, Desmond S. Lun, Brian Weiner, Farhat Mustafa, Tan Yun Cheng, D. Branch Moody, Megan Murray, James E. Galagan
Software Mentions: 3
Published: about 15 years ago

10.1371/journal.pone.0230405

Data-based analysis, modelling and forecasting of the COVID-19 outbreak
Cited by: 668
Author(s): Cleo Anastassopoulou, Lucía Russo, Athanasios Tsakris, Constantinos Siettos
Software Mentions: 3
Published: over 4 years ago

10.1002/brb3.173

A reversal coarse‐grained analysis with application to an altered functional circuit in depression
Cited by: 5
Author(s): Shuixia Guo, Yun Yu, Jie Zhang, Jianfeng Feng
Software Mentions: 3
Published: about 11 years ago

10.1186/s12859-019-3106-9

The translational network for metabolic disease – from protein interaction to disease co-occurrence
Cited by: 5
Author(s): Yonghyun Nam, Dong-Gi Lee, Sunjoo Bang, Ju Han Kim, Jae-Hoon Kim, Hyunjung Shin
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0135636

Obstructions to Sampling Qualitative Properties
Cited by: 3
Author(s): Arne C. Reimers
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0176769

Robust auto-weighted multi-view subspace clustering with common subspace representation matrix
Cited by: 16
Author(s): Wenzhang Zhuge, Chenping Hou, Yuling Jiao, Jia Yue, Tao Hong, Dongyun Yi
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pcbi.1003441

VBA: A Probabilistic Treatment of Nonlinear Models for Neurobiological and Behavioural Data
Cited by: 265
Author(s): Jean Daunizeau, Vincent Adam, Lionel Rigoux
Software Mentions: 3
Published: almost 11 years ago

10.1111/j.1365-2052.2011.02273.x

Genome‐wide association analysis for feed efficiency in Angus cattle
Cited by: 89
Author(s): Megan M Rolf, Taylor Jf, Robert D. Schnabel, Stephanie McKay, Matthew McClure, S. L. Northcutt, M. S. Kerley, R. L. Weaber
Software Mentions: 3
Published: about 13 years ago

10.1111/j.1460-9568.2009.06725.x

Serotonin excites fast-spiking interneurons in the striatum
Cited by: 49
Author(s): Craig Blomeley, Enrico Bracci
Software Mentions: 3
Published: over 15 years ago

10.1371/journal.pone.0170920

Fitting power-laws in empirical data with estimators that work for all exponents
Cited by: 48
Author(s): Rudolf Hanel, Bernat Corominas-Murtra, Bo Liu, Stefan Thurner
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0098941

Spectroscopic Characterization of a Green Copper Site in a Single-Domain Cupredoxin
Cited by: 26
Author(s): Magali Roger, Frédéric Biaso, Cindy J. Castelle, Marielle Bauzan, Florence Chaspoul, Élisabeth Lojou, Giuliano Sciara, Stefano Caffarri, Marie‐Thérèse Giudici‐Orticoni, Marianne Ilbert
Software Mentions: 3
Published: over 10 years ago

10.1186/1472-6750-7-66

High content image analysis for human H4 neuroglioma cells exposed to CuO nanoparticles
Cited by: 44
Author(s): Fuhai Li, Xiaobo Zhou, Jinmin Zhu, Jinwen Ma, Xudong Huang, Stephen T.C. Wong
Software Mentions: 3
Published: about 17 years ago

10.1371/journal.pone.0057293

EEG Source Reconstruction Reveals Frontal-Parietal Dynamics of Spatial Conflict Processing
Cited by: 107
Author(s): Michael X Cohen, K. Richard Ridderinkhof
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0235155

Learning to localize sounds in a highly reverberant environment: Machine-learning tracking of dolphin whistle-like sounds in a pool
Cited by: 3
Author(s): Sean Woodward, Diana Reiss, Marcelo O. Magnasco
Software Mentions: 3
Published: over 4 years ago

10.1155/2015/836202

Deep Adaptive Log-Demons: Diffeomorphic Image Registration with Very Large Deformations
Cited by: 10
Author(s): Liang Zhao, Kebin Jia
Software Mentions: 3
Published: almost 10 years ago

10.1186/s12915-017-0457-4

Pangenome analyses of the wheat pathogen Zymoseptoria tritici reveal the structural basis of a highly plastic eukaryotic genome
Cited by: 134
Author(s): Clémence Plissonneau, Fanny E. Hartmann, Daniel Croll
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0149921

Surface Reconstruction from Parallel Curves with Application to Parietal Bone Fracture Reconstruction
Cited by: 8
Author(s): Abdul Majeed, Abd Rahni Mt Piah, Zainor Ridzuan Yahya
Software Mentions: 3
Published: over 8 years ago

10.1093/bioinformatics/btx652

Detection of sputum by interpreting the time-frequency distribution of respiratory sound signal using image processing techniques
Cited by: 39
Author(s): Jie Niu, Yan Shi, Maolin Cai, Zhixin Cao, Dandan Wang, Zhaozhi Zhang, Xiaohua Douglas Zhang
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pcbi.1003189

A Self-Directed Method for Cell-Type Identification and Separation of Gene Expression Microarrays
Cited by: 30
Author(s): Neta S. Zuckerman, Yair Noam, Andrea Goldsmith, Peter P. Lee
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0226869

Personal response to immune checkpoint inhibitors of patients with advanced melanoma explained by a computational model of cellular immunity, tumor growth, and drug
Cited by: 12
Author(s): D. Perlstein, Ofer Shlagman, Yuri Kogan, Karin Halevi-Tobias, Alexander Yakobson, Irena Lazarev, Zvia Agur
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pbio.3001298

Origins of 1/f-like tissue oxygenation fluctuations in the murine cortex
Cited by: 14
Author(s): Qingguang Zhang, Kyle W. Gheres, Patrick J. Drew
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pbio.2000756

Beyond negative valence: 2-week administration of a serotonergic antidepressant enhances both reward and effort learning signals
Cited by: 33
Author(s): Jacqueline Scholl, Nils Kolling, Natalie Nelissen, Michael Browning, Matthew F. S. Rushworth, Catherine J. Harmer
Software Mentions: 3
Published: almost 8 years ago

10.1186/1471-2105-10-196

Triangle network motifs predict complexes by complementing high-error interactomes with structural information
Cited by: 6
Author(s): Bill Andreopoulos, Christof Winter, Dirk Labudde, Michael Schroeder
Software Mentions: 3
Published: over 15 years ago

10.1371/journal.pone.0036024

White Matter Differences between Healthy Young ApoE4 Carriers and Non-Carriers Identified with Tractography and Support Vector Machines
Cited by: 17
Author(s): Laurence O’Dwyer, Franck Lamberton, Silke Matura, Monika Scheibe, Julia Miller, Dan Rujescu, David Prvulovic, Harald Hampel
Software Mentions: 3
Published: over 12 years ago

10.3389/fnins.2019.00097

A U-Net Deep Learning Framework for High Performance Vessel Segmentation in Patients With Cerebrovascular Disease
Cited by: 153
Author(s): Michelle Livne, Jana Rieger, Orhun Utku Aydin, Abdel Aziz Taha, E. Akay, Tabea Kossen, Jan Sobesky, John D. Kelleher, Kristian Hildebrand, Dietmar Frey, Vince I. Madai
Software Mentions: 3
Published: over 5 years ago

10.1186/s12915-014-0079-z

Checkpoint-independent scaling of the Saccharomyces cerevisiaeDNA replication program
Cited by: 11
Author(s): Ariel Gispan, Miri Carmi, Naama Barkai
Software Mentions: 3
Published: about 10 years ago

10.3390/genes9050258

The Cross-Entropy Based Multi-Filter Ensemble Method for Gene Selection
Cited by: 12
Author(s): Yingqiang Sun, Chengbo Lu, Xiaobo Li
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0056883

Visualization of SNPs with t-SNE
Cited by: 78
Author(s): Alexander Platzer
Software Mentions: 3
Published: almost 12 years ago

10.5808/GI.2019.17.4.e39

The extension of the largest generalized-eigenvalue based distance metric D_ij (γ_1 ) in arbitrary feature spaces to classify composite data points
Cited by: 3
Author(s): Mosaab Daoud
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0221541

Stimulus-specific adaptation to behaviorally-relevant sounds in awake rats
Cited by: 11
Author(s): Amit Yaron, Maciej M. Jankowski, Ruan Badrieh, Israel Nelken
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0094211

Temporally and Spatially Constrained ICA of fMRI Data Analysis
Cited by: 17
Author(s): Zhi Wang, Maogeng Xia, Jin Zhou, Li Yao, Zhiling Long
Software Mentions: 3
Published: over 10 years ago

10.1111/aos.14463

Changes in oxygen saturation and the retinal nerve fibre layer in patients with optic neuritis associated with multiple sclerosis in a 6‐month follow‐up
Cited by: 4
Author(s): Tereza Svrčinová, Pavel Hok, Irena Šínová, Tomáš Dorňák, Michal Král, Petra Hübnerová, Jan Mareš, Petr Kaňovský, Martin Šín
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0189931

A four-state Markov model of sleep-wakefulness dynamics along light/dark cycle in mice
Cited by: 18
Author(s): Leonel F. Pérez-Atencio, Nicolás García-Aracil, Eduardo Fernández, Luis C. Barrio, Juan A. Barios
Software Mentions: 3
Published: almost 7 years ago

10.1186/s13007-019-0437-5

Quantifying cereal crop movement through hemispherical video analysis of agricultural plots
Cited by: 5
Author(s): Alexander Q. Susko, Peter Marchetto, D. Jo Heuschele, Kevin P. Smith
Software Mentions: 3
Published: over 5 years ago

10.1118/1.4955438

Technical Note: <scp>spektr</scp> 3.0-A computational tool for x-ray spectrum modeling and analysis
Cited by: 153
Author(s): Joshua Punnoose, Jennifer Xu, Alejandro Sisniega, Wojciech Zbijewski, Jeffrey H. Siewerdsen
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0243646

Intra- and inter-rater reliability of joint range of motion tests using tape measure, digital inclinometer and inertial motion capturing
Cited by: 13
Author(s): Laura Fraeulin, Fabian Holzgreve, Mark Brinkbäumer, Anna Dziuba, David Friebe, Stefanie Klemz, Marco Schmitt, Anna-Lena Theis A, Sarah Tenberg, Anke van Mark, Christian Maurer-Grubinger, Daniela Ohlendorf
Software Mentions: 3
Published: almost 4 years ago

10.1121/10.0002181

Context effects on phoneme categorization in children with dyslexia
Cited by: 1
Author(s): Gabrielle O’Brien, Liesbeth Gijbels, Jason D. Yeatman
Software Mentions: 3
Published: about 4 years ago

10.1186/1752-0509-8-8

Exploring metabolism flexibility in complex organisms through quantitative study of precursor sets for system outputs
Cited by: 1
Author(s): Oumarou Abdou-Arbi, Sophie Lemosquet, Jaap van Milgen, Anne Siegel, Jérémie Bourdon
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pone.0231120

Orchard layout and plant traits influence fruit yield more strongly than pollinator behaviour and density in a dioecious crop
Cited by: 4
Author(s): Angela Peace, David E. Pattemore, Melissa Broussard, Dilini Fonseka, Nathan Tomer, Nilsa A. Bosque‐Pérez, David W. Crowder, Allison K. Shaw, Linley K. Jesson, Brad G. Howlett, Mateusz Jochym, Jing Li
Software Mentions: 3
Published: about 4 years ago

Projects: cran: matlab

Papers Mentioning matlab 666