cran: labdsv | Projects | Ecosyste.ms: Papers

10.1128/mSphere.00035-20

Long-Term Nutrient Enrichment of an Oligotroph-Dominated Wetland Increases Bacterial Diversity in Bulk Soils and Plant Rhizospheres
Cited by: 22
Author(s): Regina B. Bledsoe, Carol Goodwillie, Ariane L. Peralta
Software Mentions: 3
Published: about 4 years ago

10.3390/metabo9050096

Inhibitory Effects of Green Tea Polyphenols on Microbial Metabolism of Aromatic Amino Acids in Humans Revealed by Metabolomic Analysis
Cited by: 24
Author(s): Yuyin Zhou, Ning-Ning Zhang, Andrea Y. Arikawa, Chi Chen
Software Mentions: 3
Published: over 5 years ago

10.1111/ina.12047

Indoor airborne bacterial communities are influenced by ventilation, occupancy, and outdoor air source
Cited by: 265
Author(s): James F. Meadow, Adam E. Altrichter, Steven W. Kembel, Jeff Kline, Gwynne Mhuireach, Maxwell Moriyama, Dale Northcutt, Timothy K. O’Connor, A. M. Womack, Glen Brown, J. L . Green, Brendan J. M. Bohannan
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0241973

Spatial scale and structure of complex life cycle trematode parasite communities in streams
Cited by: 3
Author(s): Sally A. Zemmer, Jillian T. Detwiler, Eric R. Sokol, Jeronimom G. Da Silva Neto, Jennie A. Wyderko, Kevin B. Potts, Zachary Gajewski, Lea V. Sarment, E. F. Benfield, Lisa K. Belden
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-018-33545-1

Showcasing the role of seawater in bacteria recruitment and microbiome stability in sponges
Cited by: 33
Author(s): Marta Turon, Joan Cáliz, Leire Garate, Emilio O. Casamayor, María Jesús Uriz
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0147058

Human-Induced Landscape Changes Homogenize Atlantic Forest Bird Assemblages through Nested Species Loss
Cited by: 19
Author(s): Marcelo Alejandro Villegas Vallejos, André Andrian Padial, Jean Ricardo Simões Vitule
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0135494

Characterization of the Intestinal Lactobacilli Community following Galactooligosaccharides and Polydextrose Supplementation in the Neonatal Piglet
Cited by: 19
Author(s): Jennifer L. Hoeflinger, Dimitri Kashtanov, Stephen B. Cox, Scot E. Dowd, Zeina E. Jouni, Sharon M. Donovan, Michael J. Miller
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0118455

Environmental Gradients Explain Species Richness and Community Composition of Coastal Breeding Birds in the Baltic Sea
Cited by: 7
Author(s): Maria Nord, Pär Forslund
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0086571

Are Temperate Canopy Spiders Tree-Species Specific?
Cited by: 19
Author(s): Anne‐Christine Mupepele, Tobias Müller, Marcus Dittrich, Andreas Floren
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0220695

Spatial heterogeneity and hydrological fluctuations drive bacterioplankton community composition in an Amazon floodplain system
Cited by: 13
Author(s): Mariana Câmara dos Reis, Inessa Lacativa Bagatini, Luciana de Oliveira Vidal, Marie‐Paule Bonnet, David da Motta Marques, Hugo Sarmento
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0128022

Chamber Bioaerosol Study: Outdoor Air and Human Occupants as Sources of Indoor Airborne Microbes
Cited by: 148
Author(s): Rachel I. Adams, Seema Bhangar, Wilmer Pasut, Edward Arens, John W. Taylor, Steven E. Lindow, William W. Nazaroff, Thomas D. Bruns
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-018-36315-1

Differences in collembola species assemblages (Arthropoda) between spoil tips and surrounding environments are dependent on vegetation development
Cited by: 9
Author(s): Benoît Vanhée, Cédric Devigne
Software Mentions: 3
Published: over 5 years ago

10.1186/s40168-019-0771-x

Molecular biogeography of planktonic and benthic diatoms in the Yangtze River
Cited by: 38
Author(s): Jiawen Wang, Qingxiang Liu, Xianfu Zhao, Alistair G. L. Borthwick, Yuxin Liu, Qian Chen, Jinren Ni
Software Mentions: 2
Published: almost 5 years ago

10.3390/toxins11110620

Meteorological and Nutrient Conditions Influence Microcystin Congeners in Freshwaters
Cited by: 15
Author(s): Zofia E. Taranu, Frances R. Pick, Irena F. Creed, Arthur Zastepa, Sue B. Watson
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0149506

Fine-Scale Vertical Stratification and Guild Composition of Saproxylic Beetles in Lowland and Montane Forests: Similar Patterns despite Low Faunal Overlap
Cited by: 28
Author(s): Matthias Weiss, J Procházka, Jiří Schlaghamerský, Lukáš Čížek
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-020-77126-7

Restoration of degraded grasslands, but not invasion by Prosopis juliflora, avoids trade-offs between climate change mitigation and other ecosystem services
Cited by: 25
Author(s): Purity Rima Mbaabu, Daniel Olago, Maina Gichaba, Sandra Eckert, René Eschen, Silas Oriaso, Simon Choge, Theo E. W. Linders, Urs Schaffner
Software Mentions: 2
Published: almost 4 years ago

10.1002/ece3.6119

Community structure and functional group of root‐associated Fungi of Pinus sylvestris var. mongolica across stand ages in the Mu Us Desert
Cited by: 22
Author(s): Peishan Zhao, Mishan Guo, Guanglei Gao, Ying Zhang, Guodong Ding, Yue Ren, Mobeen Akhtar
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-84783-9

Associations between the gut microbiome and fatigue in cancer patients
Cited by: 19
Author(s): Joud Hajjar, Tito R. Mendoza, Liangliang Zhang, Siqing Fu, Sarina A. Piha-Paul, David S. Hong, Filip Janků, Daniel D. Karp, Alexej Ballhausen, Jing Gong, Abdulrazzak Zarifa, Christine B. Peterson, Funda Meric‐Bernstam, Robert R. Jenq, Aung Naing
Software Mentions: 2
Published: over 3 years ago

10.1002/ece3.3123

<scp>DNA</scp> metabarcoding for diet analysis and biodiversity: A case study using the endangered Australian sea lion (Neophoca cinerea)
Cited by: 104
Author(s): Tina E. Berry, Sylvia K. Osterrieder, Dáithí C. Murray, Megan L. Coghlan, Anthony J. Richardson, Alicia Grealy, Michael Stat, Lars Bejder, Michael Bunce
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0094863

Faecal Microbiota Composition in Adults Is Associated with the FUT2 Gene Determining the Secretor Status
Cited by: 125
Author(s): Pirjo Wacklin, Jarno Tuimala, Janne Nikkilä, Sebastian Tims, Harri Mäkivuokko, Noora Alakulppi, Pia Laine, Mirjana Rajilić‐Stojanović, Lars Paulín, Willem M. de Vos, Jaana Mättö
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2180-12-25

Influence of wet distillers grains diets on beef cattle fecal bacterial community structure
Cited by: 47
Author(s): W. C. Rice, M. L. Galyean, Stephen B. Cox, Scot E. Dowd, N. A. Cole
Software Mentions: 2
Published: over 12 years ago

10.3390/ani10040701

Significant Differences in the Gut Bacterial Communities of Hooded Crane (Grus monacha) in Different Seasons at a Stopover Site on the Flyway
Cited by: 18
Author(s): Fengling Zhang, Xingjia Xiang, Yushu Dong, Shaomin Yan, Yunwei Song, Lizhi Zhou
Software Mentions: 2
Published: over 4 years ago

10.3390/insects11100719

Divergence in Gut Bacterial Community Among Life Stages of the Rainbow Stag Beetle Phalacrognathus muelleri (Coleptera: Lucanidae)
Cited by: 7
Author(s): Miaomiao Wang, Xingjia Xiang, Xia Wan
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0195874

Diversity of cultivable fungal endophytes in Paullinia cupana (Mart.) Ducke and bioactivity of their secondary metabolites
Cited by: 28
Author(s): Fábio de Azevedo Silva, Rhavena Graziela Liotti, Ana Paula de Araújo Boleti, Érica de Melo Reis, Marilene Borges Silva Passos, Edson Lucas dos Santos, Olívia Moreira Sampaio, Ana Helena Januário, Carmen Lucia Bassi Branco, Gilvan Ferreira da Silva, Elisabeth Aparecida Furtado de Mendonça, Marcos Antônio Soares
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0182017

Endophytic fungal communities of Polygonum acuminatum and Aeschynomene fluminensis are influenced by soil mercury contamination
Cited by: 34
Author(s): William Pietro-Souza, Ivani Souza Mello, Suzana Junges Vendruscullo, Gilvan Ferreira da Silva, Cátia Nunes da Cunha, James F. White, Marcos Antônio Soares
Software Mentions: 2
Published: about 7 years ago

10.7717/peerj.5767

Shifts in community composition and co-occurrence patterns of phyllosphere fungi inhabiting Mussaenda shikokiana along an elevation gradient
Cited by: 19
Author(s): Xin Qian, Liang Chen, Xiao‐Ming Gao, Dan He, Miaomiao Shi, Dianxiang Zhang
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12898-019-0225-0

The effect of buffer strip width and selective logging on streamside plant communities
Cited by: 22
Author(s): Anna Oldén, Ville Selonen, E. Lehkonen, Janne S. Kotiaho
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2019.00895

Soil Abiotic Properties and Plant Functional Traits Mediate Associations Between Soil Microbial and Plant Communities During a Secondary Forest Succession on the Loess Plateau
Cited by: 43
Author(s): Yimin Chai, Ying Cao, Ming Yue, Tingting Tian, Qiulong Yin, Han Dang, Jiaxin Quan, Ruichang Zhang, Mao Wang
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2019.01944

Seasonal Dynamics of Soil Fungal and Bacterial Communities in Cool-Temperate Montane Forests
Cited by: 47
Author(s): Nobuhiko Shigyo, Kiyoshi Umeki, Toshihide Hirao
Software Mentions: 2
Published: about 5 years ago

10.1128/JB.00117-21

Pathways of Iron and Sulfur Acquisition, Cofactor Assembly, Destination, and Storage in Diverse Archaeal Methanogens and Alkanotrophs
Cited by: 12
Author(s): Christina Johnson, Alexis England, Mason Munro‐Ehrlich, Daniel R. Colman, Jennifer L. DuBois, Eric S. Boyd
Software Mentions: 2
Published: about 3 years ago

10.3390/ani11040941

Seasonal Variations in the Gut Fungal Communities of Hooded Crane (Grus monacha) at Wintering and Stopover Sites in China
Cited by: 6
Author(s): Nazia Mahtab, Lizhi Zhou, Fengling Zhang, Wei Wang
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2012.00342

Endophytic bacterial community of a Mediterranean marine angiosperm (Posidonia oceanica)
Cited by: 47
Author(s): Neus Garcías-Bonet, Jesús M. Arrieta, Charles Novaes de Santana, Carlos M. Duarte, Núria Marbà
Software Mentions: 2
Published: over 12 years ago

10.3897/zookeys.625.9116

Effects of an increase in population of sika deer on beetle communities in deciduous forests
Cited by: 12
Author(s): Taichi Iida, Masashi Soga, Shinsuke Koike
Software Mentions: 2
Published: almost 8 years ago

10.1128/mBio.02104-18

Changes in Endosymbiont Complexity Drive Host-Level Compensatory Adaptations in Cicadas
Cited by: 27
Author(s): Matthew A. Campbell, Piotr Łukasik, Mariah Meyer, Mark Buckner, Chris Simon, Claudio Veloso, Anna Michalik, John P. McCutcheon
Software Mentions: 2
Published: over 5 years ago

10.3390/nu12071954

Effects of Dietary Fibres on Acute Indomethacin-Induced Intestinal Hyperpermeability in the Elderly: A Randomised Placebo Controlled Parallel Clinical Trial
Cited by: 19
Author(s): John Peter Ganda Mall, Frida Fart, Julia A. Sabet, Carl Mårten Lindqvist, Ragnhild Nestestog, Finn Terje Hegge, Åsa V. Keita, Robert Jan Brummer, Ida Schoultz
Software Mentions: 2
Published: about 4 years ago

10.1186/1759-8753-5-1

Impact of ploidy level on the distribution of Pokey element insertions in the Daphnia pulex complex
Cited by: 1
Author(s): Roland Vergilino, Shannon H. C. Eagle, Teresa J. Crease
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-017-16054-5

Invasive plants as potential food resource for native pollinators: A case study with two invasive species and a generalist bumble bee
Cited by: 21
Author(s): Maxime Drossart, Denis Michez, Maryse Vanderplanck
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2021.620309

Short-Term Thinning Influences the Rhizosphere Fungal Community Assembly of Pinus massoniana by Altering the Understory Vegetation Diversity
Cited by: 6
Author(s): Size Liu, Haifeng Yin, Xiangjun Li, Xianwei Li, Chunyu Fan, Gang Chen, Min Feng, Yuqin Chen
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0004522

Avian Incubation Inhibits Growth and Diversification of Bacterial Assemblages on Eggs
Cited by: 82
Author(s): Matthew D. Shawkey, Mary K. Firestone, Eoin L. Brodie, Steven R. Beissinger
Software Mentions: 2
Published: over 15 years ago

10.3389/fmicb.2017.00882

Bacterial Biogeography across the Amazon River-Ocean Continuum
Cited by: 62
Author(s): Mary K. Doherty, Patricia L. Yager, Mary Ann Moran, Victoria J. Coles, Caroline S. Fortunato, Alex V. Krusche, Patricia M. Medeiros, Jérôme P. Payet, Jeffrey E. Richey, Brandon M. Satinsky, Henrique O. Sawakuchi, Nicholas D. Ward, Byron C. Crump
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2021.634325

How Tillage and Crop Rotation Change the Distribution Pattern of Fungi
Cited by: 9
Author(s): Luigi Orrù, Loredana Canfora, Alessandra Trinchera, Melania Migliore, Bruno Pennelli, A. Marcucci, Roberta Farina, Flavia Pinzari
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0081308

The Environment, Not Space, Dominantly Structures the Landscape Patterns of the Richness and Composition of the Tropical Understory Vegetation
Cited by: 9
Author(s): Yuehua Hu, Da-Yong Sheng, Yangzhou Xiang, Zhen Yang, Daping Xu, Ningnan Zhang, Leilei Shi
Software Mentions: 2
Published: almost 11 years ago

10.1038/s41598-020-70683-x

Changes in the core endophytic mycobiome of carrot taproots in response to crop management and genotype
Cited by: 9
Author(s): Sahar Abdelrazek, Sulbha Choudhari, Jyothi Thimmapuram, Petr Šimon, Micaela Colley, Tesfaye Mengiste, Lori Hoagland
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0092579

Seasonal Variations and Resilience of Bacterial Communities in a Sewage Polluted Urban River
Cited by: 89
Author(s): Tamara García–Armisen, Özgül İnceoğlu, Nouho Koffi Ouattara, Adriana Anzil, Michel Verbanck, Natacha Brion, Pierre Servais
Software Mentions: 2
Published: over 10 years ago

10.3389/fmicb.2019.00508

The Composition of Nitrogen-Fixing Microorganisms Correlates With Soil Nitrogen Content During Reforestation: A Comparison Between Legume and Non-legume Plantations
Cited by: 31
Author(s): Jie Chen, Weijun Shen, Han Xu, Yide Li, Tingwei Luo
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0103959

Effect of Incubation on Bacterial Communities of Eggshells in a Temperate Bird, the Eurasian Magpie (Pica pica)
Cited by: 42
Author(s): Won Young Lee, Min‐Cheol Kim, Piotr G. Jabłoński, Jae Chun Choe, Sang‐im Lee
Software Mentions: 1
Published: about 10 years ago

10.3390/life11050434

Are Juglans neotropica Plantations Useful as a Refuge of Bryophytes Diversity in Tropical Areas?
Cited by: 0
Author(s): Jefferson Medina, Wilson Quizhpe, Jorge Déleg, Karina González, Zhofre Aguirre Mendoza, Nikolay Aguirre, Luis Roberto Sánchez Montaño, Ángel Benítez
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0083344

Pastoral Practices to Reverse Shrub Encroachment of Sub-Alpine Grasslands: Dung Beetles (Coleoptera, Scarabaeoidea) Respond More Quickly Than Vegetation
Cited by: 41
Author(s): Claudia Tocco, Massimiliano Probo, Michele Lonati, Giampiero Lombardi, Matteo Negro, Beatrice Nervo, Antonio Rolando, Claudia Palestrini
Software Mentions: 1
Published: almost 11 years ago

10.3389/fmicb.2016.01457

Microbial Community Structure of Subglacial Lake Whillans, West Antarctica
Cited by: 71
Author(s): Amanda M. Achberger, Brent C. Christner, Alexander B. Michaud, John C. Priscu, M. L. Skidmore, Trista J. Vick‐Majors
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13002-020-00404-1

Phytotherapies in motion: French Guiana as a case study for cross-cultural ethnobotanical hybridization
Cited by: 12
Author(s): Marc-Alexandre Tareau, A. Bonnefond, Marianne Palisse, Guillaume Odonne
Software Mentions: 1
Published: about 4 years ago

10.1002/ece3.7315

Pond chironomid communities revealed by molecular species delimitation reflect eutrophication
Cited by: 5
Author(s): Kiyoko Takamura, Ryuhei Ueno, Norihiko Kondo, Kako Ohbayashi
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0138696

Understanding the Spatio-Temporal Response of Coral Reef Fish Communities to Natural Disturbances: Insights from Beta-Diversity Decomposition
Cited by: 51
Author(s): Thomas Lamy, Pierre Legendre, Yannick Chancerelle, Gilles Siu, Joachim Claudet
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.36398

Host genetic selection for cold tolerance shapes microbiome composition and modulates its response to temperature
Cited by: 82
Author(s): Fotini Kokou, Goor Sasson, Tali Nitzan, Adi Doron‐Faigenboim, Sheenan Harpaz, Avner Cnaani, Itzhak Mizrahi
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0047858

Explaining Spatial Heterogeneity in Population Dynamics and Genetics from Spatial Variation in Resources for a Large Herbivore
Cited by: 27
Author(s): Adrienne L. Contasti, Emily Tissier, Jill F. Johnstone, Philip D. McLoughlin
Software Mentions: 1
Published: almost 12 years ago

10.3897/zookeys.751.20611

Madicolous Chironomidae from the Brazilian Atlantic Forest: a checklist with notes on altitudinal distributions (Diptera, Insecta)
Cited by: 6
Author(s): Erika Mayumi Shimabukuro, Susana Trivinho‐Strixino
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0128019

Branchfall as a Demographic Filter for Epiphyte Communities: Lessons from Forest Floor-Based Sampling
Cited by: 33
Author(s): Juliano Sarmento Cabral, Gunnar Petter, Glenda Mendieta‐Leiva, Katrin Wagner, Gerhard Zotz, Holger Kreft
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0092139

Global Patterns of Abundance, Diversity and Community Structure of the Aminicenantes (Candidate Phylum OP8)
Cited by: 80
Author(s): Ibrahim Farag, James P. Davis, Noha H. Youssef, Mostafa S. Elshahed
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0086560

The Soil Bacterial Communities of South African Fynbos Riparian Ecosystems Invaded by Australian Acacia Species
Cited by: 30
Author(s): Etienne Slabbert, Shayne M. Jacobs, Karin Jacobs
Software Mentions: 1
Published: over 10 years ago

10.3389/fphys.2020.00750

Effects of Elevated pCO2 on the Survival and Growth of Portunus trituberculatus
Cited by: 14
Author(s): Weichuan Lin, Zhiliang Ren, Changkao Mu, Yangfang Ye
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0074852

Matrix Intensification Alters Avian Functional Group Composition in Adjacent Rainforest Fragments
Cited by: 12
Author(s): Justus P. Deikumah, Clive McAlpine, Martine Maron
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0225128

Coupling environment and physiology to predict effects of climate change on the taxonomic and functional diversity of fish assemblages in the Murray-Darling Basin, Australia
Cited by: 16
Author(s): Anielly Galego de Oliveira, Dayani Bailly, Fernanda A. S. Cassemiro, Edivando Vitor do Couto, Nick Bond, Dean M. Gilligan, Thiago F. Rangel, Ângelo Antônio Agostinho, Mark J. Kennard
Software Mentions: 1
Published: almost 5 years ago

Projects: cran: labdsv

Papers Mentioning labdsv 161