cran: kernlab | Projects | Ecosyste.ms: Papers

10.3389/fmolb.2021.637355

Integrative Predictive Modeling of Metastasis in Melanoma Cancer Based on MicroRNA, mRNA, and DNA Methylation Data
Cited by: 5
Author(s): Ayşegül Kutlay, Yeşim Aydın Son
Software Mentions: 3
Published: about 3 years ago

10.3389/fphys.2018.01638

ABPS: An R Package for Calculating the Abnormal Blood Profile Score
Cited by: 13
Author(s): Frédéric Schütz, Alix Zollinger
Software Mentions: 3
Published: about 6 years ago

10.3389/fpls.2019.01798

High-Throughput Prediction of Whole Season Green Area Index in Winter Wheat With an Airborne Multispectral Sensor
Cited by: 12
Author(s): Josephine Bukowiecki, Till Rose, Ralph Ehlers, Henning Kage
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-017-08793-2

Theoretical Studies of Intracellular Concentration of Micro-organisms’ Metabolites
Cited by: 5
Author(s): Haifeng Yang, Xiaonan Zhang, Yan Li, Yonghong Zhang, Qin Xu, Dong‐Qing Wei
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-018-30859-y

ZNF542P is a pseudogene associated with LDL response to simvastatin treatment
Cited by: 9
Author(s): Kyungpil Kim, Elizabeth Theusch, Yu‐Lin Kuang, Andréa C. Dosé, Katrina Mitchel, Celia Cubitt, Yii‐Der I. Chen, Ronald M. Krauss, Marisa W. Medina
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-80570-0

Breath biopsy of breast cancer using sensor array signals and machine learning analysis
Cited by: 23
Author(s): Ya‐Chen Yang, Yi-Chia Wang, Hsien Yu Peng, Chi‐Hsiang Huang
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41398-021-01278-x

Structural brain network topology underpinning ADHD and response to methylphenidate treatment
Cited by: 17
Author(s): Kristi R. Griffiths, Taylor A. Braund, Michael Kohn, Simon Clarke, Leanne M. Williams, Mayuresh S. Korgaonkar
Software Mentions: 3
Published: over 3 years ago

10.1155/2019/7294582

Prediction of Breast Cancer from Imbalance Respect Using Cluster-Based Undersampling Method
Cited by: 16
Author(s): Jue Zhang, Li Chen, Fazeel Abid
Software Mentions: 3
Published: about 5 years ago

10.3390/ijms17060886

Gene Set-Based Functionome Analysis of Pathogenesis in Epithelial Ovarian Serous Carcinoma and the Molecular Features in Different FIGO Stages
Cited by: 10
Author(s): Chia Ming Chang, Chi Mu Chuang, Mong‐Lien Wang, Ming Yang, Chi-Ching Chang, Ming Shyen Yen, Shih Hwa Chiou
Software Mentions: 3
Published: over 8 years ago

10.1186/s12984-018-0456-x

Machine learning algorithms for activity recognition in ambulant children and adolescents with cerebral palsy
Cited by: 43
Author(s): Matthew Ahmadi, Margaret E. OʼNeil, Maria Fragala-Pinkham, Nancy Lennon, Stewart G. Trost
Software Mentions: 3
Published: about 6 years ago

10.1155/2018/2862458

Intelligence Algorithms for Protein Classification by Mass Spectrometry
Cited by: 5
Author(s): Zhiping Fan, Fanchen Kong, Yang Zhou, Yiqing Chen, Yalan Dai
Software Mentions: 2
Published: about 6 years ago

10.1155/2020/3659451

HYAL1 Is Downregulated in Idiopathic Pulmonary Fibrosis and Inhibits HFL-1 Fibroblast Proliferation When Upregulated
Cited by: 6
Author(s): Liubing Dong, Xiaoxi Huang, Jiawen Yi, Hongying Zhao, Yuhui Zhang
Software Mentions: 2
Published: over 4 years ago

10.1186/s12864-019-5997-2

HetEnc: a deep learning predictive model for multi-type biological dataset
Cited by: 5
Author(s): Leihong Wu, Xiangwen Liu, Joshua Xu
Software Mentions: 2
Published: over 5 years ago

10.1378/chest.15-0647

Transcriptional Profiling of Endobronchial Ultrasound-Guided Lymph Node Samples Aids Diagnosis of Mediastinal Lymphadenopathy
Cited by: 12
Author(s): Gillian S. Tomlinson, Niclas Thomas, Benjamin M. Chain, Katharine Best, Nandi Simpson, Georgia Hardavella, James M. Brown, Angshu Bhowmik, Neal Navani, Sam M. Janes, R F Miller, Mahdad Noursadeghi
Software Mentions: 2
Published: almost 9 years ago

10.1186/1471-2105-10-117

Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins
Cited by: 65
Author(s): Pawel Durek, Christian Schudoma, Wolfram Weckwerth, Joachim Selbig, Dirk Walther
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0200339

Can grimace scales estimate the pain status in horses and mice? A statistical approach to identify a classifier
Cited by: 32
Author(s): Emanuela Dalla Costa, Riccardo Pascuzzo, Matthew C. Leach, Francesca Dai, Dirk Lebelt, Simone Vantini, Michela Minero
Software Mentions: 2
Published: over 6 years ago

10.2196/jmir.7156

Classifying Chinese Questions Related to Health Care Posted by Consumers Via the Internet
Cited by: 18
Author(s): Haihong Guo, Ning Xu, Li Hou, Jiao Li
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms17081272

Gene Set−Based Integrative Analysis Revealing Two Distinct Functional Regulation Patterns in Four Common Subtypes of Epithelial Ovarian Cancer
Cited by: 13
Author(s): Chia Ming Chang, Chi Mu Chuang, Mong‐Lien Wang, Yi Yang, Jen Hua Chuang, Ming Yang, Ming Shyen Yen, Shih Hwa Chiou, Chi-Ching Chang
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0115745

Enhancing In Silico Protein-Based Vaccine Discovery for Eukaryotic Pathogens Using Predicted Peptide-MHC Binding and Peptide Conservation Scores
Cited by: 23
Author(s): Stephen J. Goodswen, Paul J. Kennedy, John Ellis
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0207624

Estimation of paddy rice leaf area index using machine learning methods based on hyperspectral data from multi-year experiments
Cited by: 31
Author(s): Li Wang, Qingrui Chang, Jing Yang, Xiaohua Zhang, Fenling Li
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pcbi.1003535

Phylogenetic Quantification of Intra-tumour Heterogeneity
Cited by: 126
Author(s): Roland F. Schwarz, Anne Trinh, Botond Sipos, James D. Brenton, Nick Goldman, Florian Markowetz
Software Mentions: 2
Published: over 10 years ago

10.3389/fpls.2021.624156

Genome-Wide Association Study and Genomic Prediction for Soybean Cyst Nematode Resistance in USDA Common Bean (Phaseolus vulgaris) Core Collection
Cited by: 17
Author(s): Ainong Shi, Paul Gepts, Qijian Song, Haizheng Xiong, Thomas E. Michaels, Senyu Chen
Software Mentions: 2
Published: over 3 years ago

10.1186/s13059-014-0460-9

Prediction of LDL cholesterol response to statin using transcriptomic and genetic variation
Cited by: 27
Author(s): Kyungpil Kim, Eugene Bolotin, Elizabeth Theusch, Haiyan Huang, Marisa W. Medina, Ronald M. Krauss
Software Mentions: 2
Published: about 10 years ago

10.3390/cancers13061287

Oncolytic Virus Therapy Alters the Secretome of Targeted Glioblastoma Cells
Cited by: 7
Author(s): Jakub Godlewski, Mohamed M. Farhath, Franz Ricklefs, Carmela Passaro, Klaudia Kiel, Hiroshi Nakashima, E. Antonio Chiocca, Agnieszka Bronisz
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0248021

Egg recognition: The importance of quantifying multiple repeatable features as visual identity signals
Cited by: 10
Author(s): Jesús Gómez, Òscar Gordo, Piotr Minias
Software Mentions: 2
Published: over 3 years ago

10.3390/foods8110573

Artificial Intelligence Applied to Flavonoid Data in Food Matrices
Cited by: 5
Author(s): Estela Guardado Yordi, Raúl Koelig, María Joäo Matos, Amaury Pérez Martínez, Yailé Caballero, Lourdes Santana, Manuel Pérez Quintana, Enrique Molina, Eugenio Uriarte
Software Mentions: 2
Published: about 5 years ago

10.3390/plants9101401

Conditioning Machine Learning Models to Adjust Lowbush Blueberry Crop Management to the Local Agroecosystem
Cited by: 9
Author(s): Léon‐Étienne Parent, Jean Lafond, Maxime C. Paré, Léon E. Parent, Noura Ziadi
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-021-95128-x

A stacking ensemble deep learning approach to cancer type classification based on TCGA data
Cited by: 45
Author(s): Mohanad Mohammed, Henry Mwambi, Innocent B. Mboya, Murtada K. Elbashir, Bernard Omolo
Software Mentions: 2
Published: over 3 years ago

10.1155/2018/7207151

Analysis and Study of Diabetes Follow-Up Data Using a Data-Mining-Based Approach in New Urban Area of Urumqi, Xinjiang, China, 2016-2017
Cited by: 20
Author(s): Yukai Li, Huling Li, Hua Yao
Software Mentions: 2
Published: over 6 years ago

10.3390/s18092845

A Study of Diagnostic Accuracy Using a Chemical Sensor Array and a Machine Learning Technique to Detect Lung Cancer
Cited by: 46
Author(s): Chi‐Hsiang Huang, Chian Zeng, Yi-Chia Wang, Hsien Yu Peng, Ching-Yen Lin, Che-Jui Chang, Ya‐Chen Yang
Software Mentions: 2
Published: about 6 years ago

10.12669/pjms.37.4.3371

Prediction of ICU admission after orthopedic surgery in elderly patients
Cited by: 1
Author(s): Yawen Tang, Hao Li, Zhiyong Guo
Software Mentions: 2
Published: over 3 years ago

10.1155/2018/9362820

Maternal Plasma Metabolomic Profiles in Spontaneous Preterm Birth: Preliminary Results
Cited by: 19
Author(s): Barbara Lizewska, Joanna Teul, Paweł Kuć, Adam Lemancewicz, Karol Charkiewicz, Joanna Gościk, Marian Kacerovský, Ramkumar Menon, Wojciech Miltyk, Piotr Laudański
Software Mentions: 2
Published: almost 7 years ago

10.1042/BSR20190187

An integrative bioinformatics analysis of microarray data for identifying hub genes as diagnostic biomarkers of preeclampsia
Cited by: 22
Author(s): Keling Liu, Qingmei Fu, Yao Liu, Chenhong Wang
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0178562

Trajectories of dementia-related cognitive decline in a large mental health records derived patient cohort
Cited by: 29
Author(s): Elizabeth Baker, Ehtesham Iqbal, Caroline Johnston, Matthew Broadbent, Hitesh Shetty, Robert Stewart, Robert Howard, Stephen Newhouse, Mizanur Khondoker, Richard Dobson
Software Mentions: 2
Published: over 7 years ago

10.1007/s00484-020-02039-z

In-season weather data provide reliable yield estimates of maize and soybean in the US central Corn Belt
Cited by: 8
Author(s): V. R. Joshi, Maciej J. Kazula, Jeffrey A. Coulter, Seth L. Naeve, Axel García y García
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0026074

VDA, a Method of Choosing a Better Algorithm with Fewer Validations
Cited by: 3
Author(s): Francesco Strino, Fulvio Parisi, Yuval Kluger
Software Mentions: 2
Published: about 13 years ago

10.3390/biom8020024

Pharmaceutical Machine Learning: Virtual High-Throughput Screens Identifying Promising and Economical Small Molecule Inhibitors of Complement Factor C1s
Cited by: 14
Author(s): Jonathan J. Chen, Lyndsey N. Schmucker, Donald P. Visco
Software Mentions: 2
Published: over 6 years ago

10.3390/biomedicines9080866

Synergistic AHR Binding Pathway with EMT Effects on Serous Ovarian Tumors Recognized by Multidisciplinary Integrated Analysis
Cited by: 4
Author(s): Kuo-Min Su, Hong‐Wei Gao, Chia‐Ming Chang, Kai-Hsi Lu, Mu-Hsien Yu, Yi-Hsin Lin, Li-Chun Liu, Chen‐Ming Chang, Yao‐Feng Li
Software Mentions: 2
Published: over 3 years ago

10.1186/1471-2105-14-68

Predictability of gene ontology slim-terms from primary structure information in Embryophyta plant proteins
Cited by: 14
Author(s): Jorge Alberto Jaramillo-Garzón, Joan J. Gallardo-Chacón, G. Castellanos-Domínguez, Alexandre Perera-Lluna
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.ppat.1004754

Cerebrospinal Fluid Cytokine Profiles Predict Risk of Early Mortality and Immune Reconstitution Inflammatory Syndrome in HIV-Associated Cryptococcal Meningitis
Cited by: 108
Author(s): Joseph N Jarvis, Graeme Meintjes, Tihana Bicanic, Viviana Buffa, Louise E. Hogan, Stephanie Mo, Gillian S. Tomlinson, Pascale Kropf, Mahdad Noursadeghi, Thomas S. Harrison
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms22084105

Dysregulated Immunological Functionome and Dysfunctional Metabolic Pathway Recognized for the Pathogenesis of Borderline Ovarian Tumors by Integrative Polygenic Analytics
Cited by: 1
Author(s): Chia‐Ming Chang, Yao‐Feng Li, Hsin‐Chung Lin, Kai-Hsi Lu, Tzu-Wei Lin, Li-Chun Liu, Kuo-Min Su, Cheng‐Chang Chang
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pcbi.1004185

Machine Learning Methods Enable Predictive Modeling of Antibody Feature:Function Relationships in RV144 Vaccinees
Cited by: 37
Author(s): Ickwon Choi, Amy W. Chung, Todd J. Suscovich, Supachai Rerks-Ngarm, Punnee Pitisuttithum, Sorachai Nitayaphan, Jaranit Kaewkungwal, Robert J. O’Connell, Donald P. Francis, Merlin L. Robb, Nelson L. Michael, Jerome H. Kim, Galit Alter, Margaret E. Ackerman, Chris Bailey‐Kellogg
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2105-12-173

An analysis of single amino acid repeats as use case for application specific background models
Cited by: 1
Author(s): Paweł P. Łabaj, Peter Sykacek, David P. Kreil
Software Mentions: 1
Published: over 13 years ago

10.1155/2014/240673

Prediction of Protein-Protein Interaction Strength Using Domain Features with Supervised Regression
Cited by: 10
Author(s): Masao Kamada, Yusuke Sakuma, Morihiro Hayashida, Tatsuya Akutsu
Software Mentions: 1
Published: almost 11 years ago

10.1172/jci.insight.87238

Blood transcriptomic diagnosis of pulmonary and extrapulmonary tuberculosis
Cited by: 60
Author(s): Jennifer Roe, Niclas Thomas, Eliza Gil, Katharine Best, Evdokia Tsaliki, Stephen Morris-Jones, Sian Stafford, Nandi Simpson, Karolina D Witt, Benjamin M. Chain, R F Miller, Adrian R. Martineau, Mahdad Noursadeghi
Software Mentions: 1
Published: about 8 years ago

10.18632/oncotarget.23364

Integrating the dysregulated inflammasome-based molecular functionome in the malignant transformation of endometriosis-associated ovarian carcinoma
Cited by: 26
Author(s): Chia‐Ming Chang, Mong‐Lien Wang, Kai-Hsi Lu, Yi‐Ping Yang, Chi-Mou Juang, Peng-Hui Wang, Ren-Jun Hsu, Mu-Hsien Yu, Cheng‐Chang Chang
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12864-016-2777-0

Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment
Cited by: 52
Author(s): Mihai Pop, Joseph N. Paulson, Subhra Chakraborty, Irina Astrovskaya, Brianna Lindsay, Shan Li, Héctor Corrada Bravo, Clayton Harro, Julian Parkhill, Alan W. Walker, Richard I. Walker, David A. Sack, O. Colin Stine
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms12021259

A Classification Study of Respiratory Syncytial Virus (RSV) Inhibitors by Variable Selection with Random Forest
Cited by: 10
Author(s): Hao Ming, Yan Li, Yonghua Wang, Shuwei Zhang
Software Mentions: 1
Published: almost 14 years ago

10.1002/jrs.5389

Biochemical fingerprint of colorectal cancer cell lines using label-free live single-cell Raman spectroscopy
Cited by: 33
Author(s): Julia Gala de Pablo, Fern J. Armistead, Sally A. Peyman, David T. Bonthron, Michael A. Lones, Stephen L. Smith, Stephen D. Evans
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms18112345

Discovering the Deregulated Molecular Functions Involved in Malignant Transformation of Endometriosis to Endometriosis-Associated Ovarian Carcinoma Using a Data-Driven, Function-Based Analysis
Cited by: 19
Author(s): Chia‐Ming Chang, Yi‐Ping Yang, Jen-Hua Chuang, Chi-Mu Chuang, Tzu-Wei Lin, Peng-Hui Wang, Mu-Hsien Yu, Cheng‐Chang Chang
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms19113311

Key Immunological Functions Involved in the Progression of Epithelial Ovarian Serous Carcinoma Discovered by the Gene Ontology-Based Immunofunctionome Analysis
Cited by: 14
Author(s): Cheng‐Chang Chang, Kuo-Min Su, Kai-Hsi Lu, Chi-Kang Lin, Peng-Hui Wang, Hsin-Yang Li, Mong‐Lien Wang, Chih‐Kung Lin, Mu-Hsien Yu, Chia‐Ming Chang
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21082824

The Potential Role of Complement System in the Progression of Ovarian Clear Cell Carcinoma Inferred from the Gene Ontology-Based Immunofunctionome Analysis
Cited by: 15
Author(s): Kuo-Min Su, Tzu-Wei Lin, Li-Chun Liu, Ying Yang, Mong‐Lien Wang, Ping-Hsing Tsai, Peng-Hui Wang, Mu-Hsien Yu, Chia‐Ming Chang, Cheng‐Chang Chang
Software Mentions: 1
Published: over 4 years ago

10.3389/fbioe.2015.00091

Capture, Unfolding, and Detection of Individual tRNA Molecules Using a Nanopore Device
Cited by: 40
Author(s): Andrew Smith, Robin Abu-Shumays, Mark Akeson, David L. Bernick
Software Mentions: 1
Published: over 9 years ago

10.3389/frai.2021.668395

Topological Data Analysis of C. elegans Locomotion and Behavior
Cited by: 0
Author(s): Ashleigh Thomas, Kathleen Bates, Alex Elchesen, Iryna Hartsock, Hang Lu, Peter Bubenik
Software Mentions: 1
Published: over 3 years ago

10.3390/e23060759

Silhouette Analysis for Performance Evaluation in Machine Learning with Applications to Clustering
Cited by: 49
Author(s): Meshal Shutaywi, Nezamoddin N. Kachouie
Software Mentions: 1
Published: over 3 years ago

10.1093/database/bau083

Mouse IDGenes: a reference database for genetic interactions in the developing mouse brain
Cited by: 2
Author(s): Michaela Matthes, Martin Preusse, Jingzhong Zhang, Julia C. Schechter, Daniela Mayer, Bernd Lentes, Fabian J. Theis, Nilima Prakash, Wolfgang Wurst, Dietrich Trümbach
Software Mentions: 1
Published: over 10 years ago

Projects: cran: kernlab

Papers Mentioning kernlab 157