cran: indicspecies | Projects | Ecosyste.ms: Papers

10.1002/ece3.4057

Applying ecological site concepts and state-and-transition models to a grazed riparian rangeland
Cited by: 6
Author(s): Felix Ratcliff, James W. Bartolome, Luke Macaulay, Sheri Spiegal, Michael D. White
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0235932

Limited overall impacts of ectomycorrhizal inoculation on recruitment of boreal trees into Arctic tundra following wildfire belie species-specific responses
Cited by: 4
Author(s): Rebecca E. Hewitt, F. Stuart Chapin, Teresa N. Hollingsworth, Michelle C. Mack, A. V. Rocha, D. Lee Taylor
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0241057

Diversity and structural differences of bacterial microbial communities in rhizocompartments of desert leguminous plants
Cited by: 8
Author(s): Ziyuan Zhou, Minghan Yu, Guodong Ding, Guanglei Gao, Yingying He
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0219493

Taxonomic and functional diversity of insect herbivore assemblages associated with the canopy-dominant trees of the Azorean native forest
Cited by: 14
Author(s): Carla Rego, Mário Boieiro, François Rigal, Sérvio Pontes Ribeiro, Pedro Cardoso, Paulo A. V. Borges
Software Mentions: 4
Published: over 5 years ago

10.1126/sciadv.aay1048

Variable effects of local management on coral defenses against a thermally regulated bleaching pathogen
Cited by: 14
Author(s): Deanna S. Beatty, Jinu Mathew Valayil, Cody S. Clements, Kim B. Ritchie, Frank J. Stewart, Mark E. Hay
Software Mentions: 4
Published: about 5 years ago

10.1111/1462-2920.13463

Pediatric obesity is associated with an altered gut microbiota and discordant shifts in <scp>F</scp>irmicutes populations
Cited by: 286
Author(s): Alessandra Riva, Francesca Borgo, Carlotta Lassandro, Elvira Verduci, Giulia Morace, Elisa Borghi, David Berry
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2020.590212

Gut Microbiomes Differ Among Dietary Types and Stool Consistency in the Captive Red Wolf (Canis rufus)
Cited by: 19
Author(s): Morgan Bragg, Elizabeth W. Freeman, Haw Chuan Lim, Nucharin Songsasen, Carly R. Muletz‐Wolz
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0237775

Diet type influences the gut microbiome and nutrient assimilation of Genetically Improved Farmed Tilapia (Oreochromis niloticus)
Cited by: 30
Author(s): Lara Parata, Debashish Mazumder, Jesmond Sammut, Suhelen Egan
Software Mentions: 4
Published: over 4 years ago

10.1093/femsec/fiab134

Indicative bacterial communities and taxa of disease-suppressing and growth-promoting composts and their associations to the rhizoplane
Cited by: 2
Author(s): Johanna Mayerhofer, Barbara Thuerig, T. Oberhaensli, Eileen Enderle, Stefanie Lutz, Christian H. Ahrens, Jacques Fuchs, Franco Widmer
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0227130

Community- and trophic-level responses of soil nematodes to removal of a non-native tree at different stages of invasion
Cited by: 2
Author(s): Guadalupe Peralta, Ian A. Dickie, G. W. Yeates, Duane A. Peltzer
Software Mentions: 4
Published: almost 5 years ago

10.3390/plants9010052

Changes in an Arbuscular Mycorrhizal Fungi Community Along an Environmental Gradient
Cited by: 29
Author(s): Larissa Vieira, Danielle Karla Alves da Silva, Indra Elena Costa Escobar, Julyana Maria da Silva, Ingrid Andrêssa de Moura, Fritz Oehl, Gladstone Alves da Silva
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2019.01080

The Soil Microbiome of GLORIA Mountain Summits in the Swiss Alps
Cited by: 58
Author(s): Magdalene Adamczyk, Frank Hagedorn, Sonja Wipf, Johanna Donhauser, Pascal Vittoz, Christian Rixen, Aline Frossard, Jean‐Paul Theurillat, Beat Frey
Software Mentions: 4
Published: over 5 years ago

10.1098/rsos.191952

Evaluation of host effects on ectomycorrhizal fungal community compositions in a forested landscape in northern Japan
Cited by: 7
Author(s): Shiro Matsuoka, Yasumasa Sugiyama, Ryunosuke Tateno, Shihomi Imamura, Eri Kawaguchi, Takashi Osono
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2021.675798

Using Plate-Wash PCR and High-Throughput Sequencing to Measure Cultivated Diversity for Natural Product Discovery Efforts
Cited by: 4
Author(s): Emily N. Junkins, Bradley S. Stevenson
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-020-58942-3

Amplicon sequencing analysis of arbuscular mycorrhizal fungal communities colonizing maize roots in different cover cropping and tillage systems
Cited by: 25
Author(s): Masao Higo, Yuya Tatewaki, Karen Iida, Kana Yokota, Katsunori Isobe
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-020-71724-1

Environmental filtering and spillover explain multi-species edge responses across agricultural boundaries in a biosphere reserve
Cited by: 7
Author(s): J. van Schalkwyk, James S. Pryke, Michael J. Samways, René Gaigher
Software Mentions: 4
Published: about 4 years ago

10.1038/s41598-021-83417-4

Soil mite communities (Acari: Mesostigmata) as indicators of urban ecosystems in Bucharest, Romania
Cited by: 9
Author(s): Minodora Manu, Raluca Ioana Băncilă, Constantin-Ciprian Bîrsan, Owen Mountford, Marilena Onete
Software Mentions: 4
Published: almost 4 years ago

10.7717/peerj.9821

Assessing the responses of Sphagnum micro-eukaryotes to climate changes using high throughput sequencing
Cited by: 10
Author(s): Monika Reczuga, Christophe V. W. Seppey, Matthieu Mulot, Vincent E. J. Jassey, Alexandre Buttler, Sandra Słowińska, Michael Słowiński, Enrique Lara, Mariusz Lamentowicz, Edward A. D. Mitchell
Software Mentions: 4
Published: about 4 years ago

10.1038/s41598-021-95146-9

The phyllosphere microbiome of host trees contributes more than leaf phytochemicals to variation in the Agrilus planipennis Fairmaire gut microbiome structure
Cited by: 7
Author(s): Judith Mogouong, Philippe Constant, Pierre Legendre, Claude Guertin
Software Mentions: 4
Published: over 3 years ago

10.1186/s13071-021-04579-8

Blood meal source and mixed blood-feeding influence gut bacterial community composition in Aedes aegypti
Cited by: 14
Author(s): Ephantus J. Muturi, Teresia Muthoni Njoroge, Christopher A. Dunlap, Carla E. Cáceres
Software Mentions: 4
Published: almost 4 years ago

10.3389/fmicb.2020.00982

Functional and Structural Responses of Arctic and Alpine Soil Prokaryotic and Fungal Communities Under Freeze-Thaw Cycles of Different Frequencies
Cited by: 27
Author(s): Carla Perez-Mon, Beat Frey, Aline Frossard
Software Mentions: 4
Published: over 4 years ago

10.3390/insects12010011

Olfactory Choice for Decomposition Stage in the Burying Beetle Nicrophorus vespilloides: Preference or Aversion?
Cited by: 4
Author(s): Pablo J. Delclós, Tammy L. Bouldin, Jeffery K. Tomberlin
Software Mentions: 4
Published: almost 4 years ago

10.1186/s40168-019-0776-5

Coral microbiome composition along the northern Red Sea suggests high plasticity of bacterial and specificity of endosymbiotic dinoflagellate communities
Cited by: 55
Author(s): Eslam O. Osman, David J. Suggett, Christian R. Voolstra, D. Tye Pettay, Dave R. Clark, Claudia Pogoreutz, Eugenia M. Sampayo, Mark E. Warner, David J. Smith
Software Mentions: 4
Published: almost 5 years ago

10.3390/insects9040152

Distribution Patterns of Odonate Assemblages in Relation to Environmental Variables in Streams of South Korea
Cited by: 13
Author(s): Da-Yeong Lee, Dae‐Seong Lee, Mi‐Jung Bae, Soon-Jin Hwang, Seong-Yu Noh, Jeong-Suk Moon, Young‐Seuk Park
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2020.01686

Soil Fungal Communities Investigated by Metabarcoding Within Simulated Forensic Burial Contexts
Cited by: 11
Author(s): Noemi Procopio, Stefano Ghignone, Samuele Voyron, Marco Chiapello, Anna Williams, Andrew Chamberlain, Antonietta Mello, Michael Buckley
Software Mentions: 4
Published: over 4 years ago

10.3897/zookeys.1041.63884

Ichthyofauna in the last free-flowing river of the Lower Iguaçu basin: the importance of tributaries for conservation of endemic species
Cited by: 4
Author(s): Suelen Fernanda Ranucci Pini, Maristela Cavicchioli Makrakis, Mayara Pereira Neves, Sérgio Makrakis, Oscar Akio Shibatta, Elaine Antoniassi Luiz Kashiwaqui
Software Mentions: 4
Published: over 3 years ago

10.1002/eap.2089

Local‐ and landscape‐scale variables shape insect diversity in an urban biodiversity hot spot
Cited by: 36
Author(s): Benjamin J. Adams, Enjie Li, Christine A. Bahlai, Emily K. Meineke, Terrence P. McGlynn, Brian V. Brown
Software Mentions: 4
Published: over 4 years ago

10.1128/mSystems.00038-18

Holistic Assessment of Rumen Microbiome Dynamics through Quantitative Metatranscriptomics Reveals Multifunctional Redundancy during Key Steps of Anaerobic Feed Degradation
Cited by: 66
Author(s): Andrea Söllinger, Alexander Tøsdal Tveit, Morten Poulsen, Samantha Joan Noel, Mia M. Bengtsson, Jörg Bernhardt, Anne Louise Frydendahl Hellwing, Peter Lund, Katharina Riedel, Christa Schleper, Ole Højberg, Tim Urich
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-018-22380-z

Spatio-temporal dynamics of soil bacterial communities as a function of Amazon forest phenology
Cited by: 34
Author(s): Erika Buscardo, József Geml, Steven K. Schmidt, Helena Freitas, Hillândia Brandão da Cunha, László Nagy
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0215274

Multi-driver and multi-scale assessment of vine community structure and composition across a complex tropical environmental matrix
Cited by: 1
Author(s): Diana L. Delgado, Carla Restrepo
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.6560

Plant species identity drives soil microbial community structures that persist under a following crop
Cited by: 19
Author(s): Aaron Fox, Andreas Lüscher, Franco Widmer
Software Mentions: 4
Published: over 4 years ago

10.1002/ece3.1881

High richness of ectomycorrhizal fungi and low host specificity in a coastal sand dune ecosystem revealed by network analysis
Cited by: 21
Author(s): Alice Roy‐Bolduc, Étienne Laliberté, Mohamed Hijri
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-019-42391-8

Bacterial disease induced changes in fungal communities of olive tree twigs depend on host genotype
Cited by: 28
Author(s): Teresa Gomes, José Alberto Pereira, Teresa Lino-Neto, Alison E. Bennett, Paula Baptista
Software Mentions: 3
Published: over 5 years ago

10.1186/s40168-019-0770-y

Niche differentiation rather than biogeography shapes the diversity and composition of microbiome of Cycas panzhihuaensis
Cited by: 66
Author(s): Ying Zheng, Xun Gong
Software Mentions: 3
Published: almost 5 years ago

10.1186/s40168-015-0097-2

Humanized microbiota mice as a model of recurrent Clostridium difficile disease
Cited by: 63
Author(s): James W. Collins, Jennifer M. Auchtung, Laura Schaefer, Kathryn A. Eaton, Robert A. Britton
Software Mentions: 3
Published: over 9 years ago

10.3390/microorganisms8060806

Bacterial Tomato Pathogen Ralstonia solanacearum Invasion Modulates Rhizosphere Compounds and Facilitates the Cascade Effect of Fungal Pathogen Fusarium solani
Cited by: 11
Author(s): Lv Su, Lifan Zhang, Duoqian Nie, Eiko E. Kuramae, Biao Shen, Qirong Shen
Software Mentions: 3
Published: over 4 years ago

10.7717/peerj.7744

Microbial communities associated with the black morel Morchella sextelata cultivated in greenhouses
Cited by: 41
Author(s): Gian Maria Niccolò Benucci, Reid Longley, Peng Zhang, Qi Zhao, Gregory Bonito, Fuqiang Yu
Software Mentions: 3
Published: about 5 years ago

10.7717/peerj.6609

Phytobiomes are compositionally nested from the ground up
Cited by: 30
Author(s): Anthony S. Amend, Gerald M. Cobian, Áki J. Láruson, Kristina Remple, Sarah J. Tucker, Kirsten E Poff, Carmen Antaky, André Boraks, Casey A Jones, Donna Lee Kuehu, Becca R Lensing, Mersedeh Pejhanmehr, Daniel T Richardson, Paul P Riley
Software Mentions: 3
Published: over 5 years ago

10.3390/plants10010040

The Hydrological-Hydrochemical Factors that Control the Invasion of the Black Locust (Robinia pseudoacacia L.) in Succession in Areas with Opencast Mines
Cited by: 2
Author(s): Joanna Kidawa, Damian Chmura, Tadeusz Molenda
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0248863

Copepods and ostracods associated with bromeliads in the Yucatán Peninsula, Mexico
Cited by: 3
Author(s): Nancy F. Mercado-Salas, Sahar Khodami, Pedro Martínez Arbizu
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0209234

Relative influence of environmental factors on the timing and occurrence of multi-species coral reef fish aggregations
Cited by: 8
Author(s): Eric E. Fisher, J. Howard Choat, Mark I. McCormick, Michael Cappo
Software Mentions: 3
Published: almost 6 years ago

10.1093/conphys/cov012

Selective logging: does the imprint remain on tree structure and composition after 45 years?
Cited by: 26
Author(s): Oyomoare L. Osazuwa‐Peters, Colin A. Chapman, Amy E. Zanne
Software Mentions: 3
Published: almost 10 years ago

10.1002/ece3.7218

Burrowing by translocated boodie ( Bettongia lesueur ) populations alters soils but has limited effects on vegetation
Cited by: 5
Author(s): Bryony Palmer, Leonie E. Valentine, Cheryl A. Lohr, Gergana N. Daskalova, Richard J. Hobbs
Software Mentions: 3
Published: over 3 years ago

10.1002/ece3.6562

Classifying biogeographic realms of the endemic fauna in the Afro‐Arabian region
Cited by: 6
Author(s): Alaaeldin Soultan, Martin Wikelski, Kamran Safi
Software Mentions: 3
Published: over 4 years ago

10.1002/ece3.5383

From canopy to seed: Loss of snow drives directional changes in forest composition
Cited by: 7
Author(s): Sarah M. Bisbing, Brian Buma, Lauren E. Oakes, John Krapek, Allison Bidlack
Software Mentions: 3
Published: over 5 years ago

10.1007/s00267-017-0889-1

Macroinvertebrate Taxonomic and Functional Trait Compositions within Lotic Habitats Affected By River Restoration Practices
Cited by: 30
Author(s): James C. White, Matthew J. Hill, Melanie A. Bickerton, Paul J. Wood
Software Mentions: 3
Published: over 7 years ago

10.1093/femsec/fiaa082

Vegetation type determines spore deposition within a forest–agricultural mosaic landscape
Cited by: 19
Author(s): Miguel Á. Redondo, Anna Berlin, Johanna Boberg, Jonàs Oliva
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2017.01997

Amplicon-Based Sequencing of Soil Fungi from Wood Preservative Test Sites
Cited by: 9
Author(s): Grant T. Kirker, Amy B. Bishell, Michelle A. Jusino, Jonathan M. Palmer, William J. Hickey, Daniel L. Lindner
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2019.00461

Spatial Variability of Antarctic Surface Snow Bacterial Communities
Cited by: 19
Author(s): Lucie Malard, Marie Šabacká, Iordanis Magiopoulos, Matthew C. Mowlem, Andy Hodson, Martyn Tranter, Martín J. Siegert, David A. Pearce
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2020.00616

Soil Microbes Trade-Off Biogeochemical Cycling for Stress Tolerance Traits in Response to Year-Round Climate Change
Cited by: 34
Author(s): Maria O. Garcia, Pamela H. Templer, P. Sørensen, Rebecca Sanders‐DeMott, Peter M. Groffman, Jennifer M. Bhatnagar
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2020.615661

A Model System for Feralizing Laboratory Mice in Large Farmyard-Like Pens
Cited by: 10
Author(s): Henriette Arnesen, Linn Emilie Knutsen, Bente Wabakken Hognestad, G. Johansen, Mats Bemark, Oliver Pabst, Anne K. Storset, Preben Boysen
Software Mentions: 3
Published: almost 4 years ago

10.3389/fmicb.2018.02120

Determinants of Deadwood-Inhabiting Fungal Communities in Temperate Forests: Molecular Evidence From a Large Scale Deadwood Decomposition Experiment
Cited by: 39
Author(s): Witoon Purahong, Tesfaye Wubet, Guillaume Lentendu, Björn Hoppe, Katalee Jariyavidyanont, Tobias Arnstadt, Kristin Baber, Peter Otto, Harald Kellner, Martin Hofrichter, Jürgen Bauhus, Wolfgang W. Weisser, Dirk Krüger, Ernst Detlef Schulze, Tiemo Kahl, François Buscot
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2021.715991

Brazilian Semi-Arid Mangroves-Associated Microbiome as Pools of Richness and Complexity in a Changing World
Cited by: 6
Author(s): Tallita Cruz Lopes Tavares, Walderly Melgaço Bezerra, Leonardo Ribeiro Oliveira Normando, Alexandre Soares Rosado, Vânia Maria Maciel Melo
Software Mentions: 3
Published: about 3 years ago

10.3389/fmicb.2016.01622

Host-Specific Functional Significance of Caenorhabditis Gut Commensals
Cited by: 59
Author(s): Maureen Berg, Xiao Ying Zhou, Michael Y. Shapira
Software Mentions: 3
Published: about 8 years ago

10.3389/fmicb.2021.620220

Different Active Microbial Communities in Two Contrasted Subantarctic Fjords
Cited by: 1
Author(s): Claudia Maturana-Martínez, Camila Fernández, Humberto E. González, Pierre E. Galand
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2020.571159

Niche Specialization and Functional Overlap of Bamboo Leaf and Root Microbiota
Cited by: 8
Author(s): Ying Zheng, Xinchun Lin
Software Mentions: 3
Published: about 4 years ago

10.3389/fmicb.2020.605622

Pathogen Infection and Host-Resistance Interactively Affect Root-Associated Fungal Communities in Watermelon
Cited by: 8
Author(s): Lihui Xu, Mogens Nicolaisen, John Larsen, Rong Zeng, Shigang Gao, Fangyin Dai
Software Mentions: 3
Published: almost 4 years ago

10.3389/fpls.2021.634960

Life on the Rocks: First Insights Into the Microbiota of the Threatened Aquatic Rheophyte Hanseniella heterophylla
Cited by: 3
Author(s): Witoon Purahong, Shakhawat Hossen, Ali Nawaz, Dolaya Sadubsarn, Benjawan Tanunchai, Sven Dommert, Matthias Noll, La‐aw Ampornpan, Petcharat Werukamkul, Tesfaye Wubet
Software Mentions: 3
Published: over 3 years ago

10.1016/j.jcf.2020.05.013

The fungal airway microbiome in cystic fibrosis and non-cystic fibrosis bronchiectasis
Cited by: 31
Author(s): Leah Cuthbertson, I. Felton, Phillip James, Michael J. Cox, Diana Bilton, Silke Schelenz, Michael R. Loebinger, Woc Cookson, Nicholas J. Simmonds, Miriam F. Moffatt
Software Mentions: 3
Published: over 3 years ago

10.1111/1365-2745.13409

Community‐level interactions between plants and soil biota during range expansion
Cited by: 13
Author(s): Kadri Koorem, L. Basten Snoek, J. Bloem, Stefan Geisen, Olga Kostenko, Marta Manrubia, Kelly S. Ramirez, Carolin Weser, Rutger A. Wilschut, W.H. van der Putten
Software Mentions: 3
Published: over 4 years ago

10.1038/srep24336

Ectomycorrhizal fungal communities associated with Populus simonii and Pinus tabuliformis in the hilly-gully region of the Loess Plateau, China
Cited by: 30
Author(s): Dongfeng Long, Jianjun Li, Qisheng Han, Xiaobing Wang, Jian Huang
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-017-06938-x

Fungal root symbionts of high-altitude vascular plants in the Himalayas
Cited by: 47
Author(s): Milan Kotilínek, Inga Hiiesalu, Jiří Košnar, Marie Šmilauerová, Petr Šmilauer, Jan Altman, Miroslav Dvorský, Martin Kopecký, Jiří Doležal
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-017-08401-3

Interactions count: plant origin, herbivory and disturbance jointly explain seedling recruitment and community structure
Cited by: 4
Author(s): Lotte Korell, Birgit Lang, Isabell Hensen, Harald Auge, Helge Bruelheide
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-017-11452-1

Deep-reef fish assemblages of the Great Barrier Reef shelf-break (Australia)
Cited by: 25
Author(s): Tiffany L. Sih, Michael Cappo, Michael J. Kingsford
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-017-15377-7

Mitochondrial gene polymorphism is associated with gut microbial communities in mice
Cited by: 47
Author(s): Misa Hirose, Axel Künstner, Paul Schilf, Annika Sünderhauf, Jan Rupp, Olaf Jöhren, Markus Schwaninger, Christian Sina, John F. Baines, Saleh M. Ibrahim
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-018-36867-2

Soil parameters, land use, and geographical distance drive soil bacterial communities along a European transect
Cited by: 50
Author(s): Pierre Plassart, Nicolas Chemidlin Prévost-Bouré, Stéphane Uroz, Samuel Dequiedt, D. Stone, Rachel Creamer, Robert I. Griffiths, Mark Bailey, Lionel Ranjard, Philippe Lemanceau
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-019-39829-4

Intensive tropical land use massively shifts soil fungal communities
Cited by: 70
Author(s): Nicole Brinkmann, Dominik Schneider, Josephine Sahner, Johannes Ballauff, Nur Edy, Henry Barus, Bambang Irawan, Setia Budi, Matin Qaim, Rolf Daniel, Andrea Polle
Software Mentions: 3
Published: over 5 years ago

10.1186/s13568-016-0306-9

Microbial communities in pyrene amended soil–compost mixture and fertilized soil
Cited by: 12
Author(s): Iris K. U. Adam, M. M. L. Duarte, Jananan S. Pathmanathan, Anja Miltner, Thomas Brüls, Matthias Kästner
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-019-55036-7

Short-interval wildfire and drought overwhelm boreal forest resilience
Cited by: 111
Author(s): Ellen Whitman, Marc‐André Parisien, Dan K. Thompson, Mike D. Flannigan
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-021-83783-z

The pelvic flexure separates distinct microbial communities in the equine hindgut
Cited by: 1
Author(s): Kailee J. Reed, I.G.Z. Kunz, J.A. Scare, Martin K. Nielsen, Philip Turk, Robert J. Coleman, S. J. Coleman
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-021-87623-y

Land use in urban areas impacts the composition of soil bacterial communities involved in nitrogen cycling. A case study from Lefkosia (Nicosia) Cyprus
Cited by: 11
Author(s): Coralea Stephanou, Michalis Omirou, Laurent Philippot, Andreas M. Zissimos, Irene C. Christoforou, Slave Trajanoski, Anastasis Oulas, Ioannis M. Ioannides
Software Mentions: 3
Published: over 3 years ago

10.1128/mBio.02336-20

The Native Microbiome is Crucial for Offspring Generation and Fitness of Aurelia aurita
Cited by: 21
Author(s): Nancy Weiland‐Bräuer, Nicole Pinnow, Daniela Langfeldt, Anna Krystyna Roik, Simon Güllert, Cynthia Maria Chibani, Thorsten B.H. Reusch, Ruth A. Schmitz
Software Mentions: 2
Published: almost 4 years ago

10.3389/fcimb.2021.701109

Gilbert’s Syndrome and the Gut Microbiota – Insights From the Case-Control BILIHEALTH Study
Cited by: 3
Author(s): Patrick A. Zöhrer, Claudia A. Hana, Nazlisadat Seyed Khoei, Christine Mölzer, Marlies Hörmann-Wallner, Anela Tosevska, Daniel Doberer, Rodrig Marculescu, Andrew Cameron Bulmer, Craig W. Herbold, David Berry, Karl‐Heinz Wagner
Software Mentions: 2
Published: about 3 years ago

10.1111/j.1462-2920.2011.02666.x

amoA‐based consensus phylogeny of ammonia‐oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions
Cited by: 445
Author(s): Michael Pester, Thomas Rattei, Stefan Flechl, Alexander Gröngröft, Andreas Richter, Jörg Overmann, Barbara Reinhold‐Hurek, Alexander Loy, Michael Wagner
Software Mentions: 2
Published: almost 13 years ago

10.1002/ece3.7495

The role of bracket fungi in creating alpha diversity of invertebrates in the Białowieża National Park, Poland
Cited by: 2
Author(s): Anna K. Gdula, Szymon Konwerski, Izabella Olejniczak, Tomasz Rutkowski, Piotr Skubała, Bogna Zawieja, Dariusz J. Gwiazdowicz
Software Mentions: 2
Published: over 3 years ago

10.7554/eLife.61644

The diversity and function of sourdough starter microbiomes
Cited by: 66
Author(s): Elizabeth A. Landis, Angela M. Oliverio, Erin A. McKenney, Lauren M. Nichols, Nicole Kfoury, Megan N. Biango-Daniels, Leonora Shell, Anne A. Madden, Lori R. Shapiro, Shravya Sakunala, Kinsey Drake, Albert Robbat, Matthew Booker, Robert R. Dunn, Noah Fierer, Benjamin E. Wolfe
Software Mentions: 2
Published: almost 4 years ago

10.7717/peerj.6027

Saproxylic Diptera assemblages in a temperate deciduous forest: implications for community assembly
Cited by: 7
Author(s): Julia J. Mlynarek, Amélie Grégoire Taillefer, Terry A. Wheeler
Software Mentions: 2
Published: almost 6 years ago

10.1007/s11270-018-3940-9

Reconstructing the Trophic History of an Alpine Lake (High Tatra Mts.) Using Subfossil Diatoms: Disentangling the Effects of Climate and Human Influence
Cited by: 10
Author(s): Lucia Sochuliaková, Elwira Sienkiewicz, Ladislav Hamerlík, Marek Svitok, Dana Fidlerová, Peter Bitušík
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2015.01524

Expanding the World of Marine Bacterial and Archaeal Clades
Cited by: 91
Author(s): Pelin Yilmaz, Pablo Yarza, Josephine Z. Rapp, Frank Oliver Glöckner
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2017.00416

Members of the Oral Microbiota Are Associated with IL-8 Release by Gingival Epithelial Cells in Healthy Individuals
Cited by: 16
Author(s): Katharina Schueller, Alessandra Riva, Stefanie Pfeiffer, David Berry, Veronika Somoza
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2015.00845

Namib Desert dune/interdune transects exhibit habitat-specific edaphic bacterial communities
Cited by: 37
Author(s): Sandra Ronca, Jean‐Baptiste Ramond, Brian E. Jones, Mary Seely, Don A. Cowan
Software Mentions: 2
Published: about 9 years ago

10.3389/fmicb.2021.675665

Influence of Environmental Factors on the Variability of Archaeal Communities in a Karst Wetland
Cited by: 4
Author(s): Ying Chen, Kairui Qiu, Ziyuan Zhong, Tao Zhou
Software Mentions: 2
Published: about 3 years ago

10.3390/insects12050412

Carcasses at Fixed Locations Host a Higher Diversity of Necrophilous Beetles
Cited by: 4
Author(s): Christian von Hoermann, Tomáš Lackner, David Sommer, Marco Heurich, M. Eric Benbow, Jörg Müller
Software Mentions: 2
Published: over 3 years ago

10.1093/ve/veaa065

Red fox viromes in urban and rural landscapes
Cited by: 21
Author(s): Sandra J. Campbell, Wilbur Ashley, Margarita Gil-Fernández, Thomas M. Newsome, Francesca Di Giallonardo, Ayda Susana Ortiz-Báez, Jackie E. Mahar, Alison Towerton, Michael R. Gillings, Edward C. Holmes, Alexandra J. R. Carthey, Jemma L. Geoghegan
Software Mentions: 2
Published: over 4 years ago

10.1186/s13002-020-00367-3

Use of game fauna by Fulni-ô people in Northeastern Brazil: implications for conservation
Cited by: 4
Author(s): Josivan Soares da Silva, Aguinaldo José do Nascimento, Rômulo Romeu Nóbrega Alves, Ulysses Paulino Albuquerque
Software Mentions: 2
Published: over 4 years ago

10.1038/srep36067

Microbial community dynamics in the rhizosphere of a cadmium hyper-accumulator
Cited by: 46
Author(s): Jennifer L. Wood, C Zhang, Elizabeth R. Mathews, Caixian Tang, Ashley E. Franks
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-017-02656-6

Host-specific assembly of sponge-associated prokaryotes at high taxonomic ranks
Cited by: 33
Author(s): Georg Steinert, Sven Rohde, Dorte Janussen, Claudia Blaurock, Peter J. Schupp
Software Mentions: 2
Published: over 7 years ago

10.3390/microorganisms8091291

Mining the Microbiome of Key Species from African Savanna Woodlands: Potential for Soil Health Improvement and Plant Growth Promotion
Cited by: 11
Author(s): Ivete Maquia, Paula Fareleira, Isabel Videira e Castro, Denise R. A. Brito, Ricardo Soares, Aniceto Chaúque, M.M. Ferreira-Pinto, Erica Lumini, Andrea Berruti, Natasha Ribeiro, Isabel Marques, Ana I. Ribeiro‐Barros
Software Mentions: 2
Published: over 4 years ago

10.3390/microorganisms8020169

Effect of a Profound Feedstock Change on the Structure and Performance of Biogas Microbiomes
Cited by: 6
Author(s): Johanna Klang, Ulrich Szewzyk, Daniel Bock, Susanne Theuerl
Software Mentions: 2
Published: almost 5 years ago

10.1186/s40168-020-00824-x

A predatory myxobacterium controls cucumber Fusarium wilt by regulating the soil microbial community
Cited by: 73
Author(s): Xianfeng Ye, Zhoukun Li, Xue Luo, Wenhui Wang, Yongkai Li, Rui Li, Bo Zhang, Yan Qiao, Jie Zhou, Jiaqin Fan, Hui Wang, Yan Huang, Hui Cao, Zhongli Cui, Ruifu Zhang
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-017-12226-5

Filtering effect of temporal niche fluctuation and amplitude of environmental variations on the trait-related flowering patterns: lesson from sub-Mediterranean grasslands
Cited by: 13
Author(s): Andrea Catorci, Karina Piermarteri, Károly Penksza, Judit Házi, Federico Maria Tardella
Software Mentions: 2
Published: about 7 years ago

10.1186/s40168-018-0413-8

The Populus holobiont: dissecting the effects of plant niches and genotype on the microbiome
Cited by: 247
Author(s): Melissa Cregger, Allison M. Veach, Zamin K. Yang, Miranda Crouch, Rytas Vilgalys, Gerald A. Tuskan, Christopher W. Schadt
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.dib.2018.12.005

Species composition and plant traits of south Atlantic European coastal dunes and other comparative data
Cited by: 1
Author(s): Marta Torca, Juan Antonio Campos, Mercedes Herrera
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0062091

In-situ Effects of Eutrophication and Overfishing on Physiology and Bacterial Diversity of the Red Sea Coral Acropora hemprichii
Cited by: 85
Author(s): Christian Jessen, Javier Felipe Villa Lizcano, Till Bayer, Cornelia Roder, Manuel Aranda, Christian Wild, Christian R. Voolstra
Software Mentions: 2
Published: over 11 years ago

10.1038/s41598-018-37321-z

Potential role of host-derived quorum quenching in modulating bacterial colonization in the moon jellyfish Aurelia aurita
Cited by: 24
Author(s): Nancy Weiland‐Bräuer, Martin Fischer, Nicole Pinnow, Ruth A. Schmitz
Software Mentions: 2
Published: almost 6 years ago

10.1186/s40168-017-0241-2

Structural variability and niche differentiation in the rhizosphere and endosphere bacterial microbiome of field-grown poplar trees
Cited by: 316
Author(s): Bram Beckers, Michiel Op De Beeck, Nele Weyens, Wout Boerjan, Jaco Vangronsveld
Software Mentions: 2
Published: over 7 years ago

10.1186/s12870-020-2300-2

Effects of shade stress on turfgrasses morphophysiology and rhizosphere soil bacterial communities
Cited by: 21
Author(s): Juanjuan Fu, Yingchun Luo, Peng Sun, Jinzhu Gao, Dong-Hao Zhao, Peizhi Yang, Tianming Hu
Software Mentions: 2
Published: over 4 years ago

10.3390/plants9111453

Permafrost Degradation Leads to Biomass and Species Richness Decreases on the Northeastern Qinghai-Tibet Plateau
Cited by: 18
Author(s): Xiaoying Jin, Huijun Jin, Xiaodong Wu, Sheng Yu, Xiaoying Li, Ruixia He, Qingfeng Wang, Johannes M. H. Knops
Software Mentions: 2
Published: about 4 years ago

10.3390/antiox10010027

Long-Term Consumption of Anthocyanin-Rich Fruit Juice: Impact on Gut Microbiota and Antioxidant Markers in Lymphocytes of Healthy Males
Cited by: 11
Author(s): Isabel Anna Maria Groh, Alessandra Riva, Dominik Braun, Heidi G. Sutherland, Owen Williams, Tamara Bakuradze, Gudrun Pahlke, Elke Richling, Larisa M. Haupt, Lyn R. Griffiths, David Berry, Doris Marko
Software Mentions: 2
Published: almost 4 years ago

10.7717/peerj.1705

The structure and diversity of freshwater diatom assemblages from Franz Josef Land Archipelago: a northern outpost for freshwater diatoms
Cited by: 18
Author(s): Sergi Pla‐Rabès, Paul B. Hamilton, Enric Ballesteros, Maria Gavrilo, Alan M. Friedlander, Enric Sala
Software Mentions: 2
Published: almost 9 years ago

Projects: cran: indicspecies

Papers Mentioning indicspecies 218