Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: igraph
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/igraph
Network Analysis and Visualization
66 versions
Latest release: over 1 year ago
891 dependent packages
694,900 downloads last month
Papers Mentioning igraph 1,555
10.1038/s41396-018-0232-8
Genetic correlation network prediction of forest soil microbial functional organizationCited by: 56
Author(s): Bin Ma, Kankan Zhao, Xiaofei Lv, Weiqin Su, Zhongmin Dai, Jack A. Gilbert, Philip C. Brookes, Karoline Faust, Jianming Xu
Software Mentions: 2
Published: over 6 years ago
10.1186/2042-6410-4-20
Sex chromosome complement regulates expression of mood-related genesCited by: 54
Author(s): Marianne L. Seney, Kokomma I Ekong, Ying Ding, George C. Tseng, Etienne Sibille
Software Mentions: 2
Published: about 11 years ago
10.1038/s41396-021-00957-3
Light exposure mediates circadian rhythms of rhizosphere microbial communitiesCited by: 32
Author(s): Kankan Zhao, Bin Ma, Yan Xu, Erinne Stirling, Jianming Xu
Software Mentions: 2
Published: over 3 years ago
10.1186/s13012-017-0611-y
Rapid sociometric mapping of community health workers to identify opinion leaders using an SMS platform: a short reportCited by: 4
Author(s): Thomas Odeny, Maya Petersen, Charles T. Muga, Jayne Lewis-Kulzer, Elizabeth A. Bukusi, Elvin Geng
Software Mentions: 2
Published: over 7 years ago
10.1186/s13012-021-01150-y
Influence of physician networks on prescribing a new ingredient combination in heart failure: a longitudinal claim data-based studyCited by: 2
Author(s): Christine Arnold, Jan Koetsenruijter, Johanna Forstner, Frank Peters-Klimm, Michel Wensing
Software Mentions: 2
Published: about 3 years ago
10.1186/s40249-020-00668-5
Pretreatment HIV drug resistance in adults initiating antiretroviral therapy in China, 2017Cited by: 19
Author(s): Ran Kang, Shanshan Liang, Yanhui Ma, Shu Liang, Lin Xiao, Xinhui Zhang, Hongzhou Lu, Xun Xu, Suxin Luo, Xiaoguang Sun, Lin Chen, Jianmei He, Guohui Wu, Lingjie Liao, Hui Xing, Yiming Shao, Yuhua Ruan
Software Mentions: 2
Published: over 4 years ago
10.1007/s41109-021-00355-w
Lost and found: applying network analysis to public health contact tracing for HIVCited by: 0
Author(s): Dana K. Pasquale, Irene A. Doherty, Peter A. Leone, Ann M. Dennis, Erika Samoff, Constance S. Jones, John E Barnhart, William C. Miller
Software Mentions: 2
Published: almost 4 years ago
10.3390/insects11020081
Allometry and Fighting Behaviour of a Dimorphic Stag Beetle Cyclommatus mniszechi (Coleoptera: Lucanidae)Cited by: 9
Author(s): Zhen Yi Chen, Yu-Wei Hsu, Chung Ping Lin
Software Mentions: 2
Published: almost 5 years ago
10.1155/2011/238743
Contact Heterogeneity and Phylodynamics: How Contact Networks Shape Parasite Evolutionary TreesCited by: 17
Author(s): Eamon B. O’Dea, Claus O. Wilke
Software Mentions: 2
Published: almost 14 years ago
10.1093/bioinformatics/btt486
Optimizing a global alignment of protein interaction networksCited by: 56
Author(s): Leonid Chindelevitch, Chengyu Ma, Chung-Shou Liao, Bonnie Berger
Software Mentions: 2
Published: about 11 years ago
10.1111/jcmm.14792
Integrative transcriptomic and proteomic analysis reveals CD9/ITGA4/PI3K‐Akt axis mediates trabecular meshwork cell apoptosis in human glaucomaCited by: 14
Author(s): Junwei Yan, Xiaofeng Yang, Xuefei Jiao, Xian Yang, Mingzhou Guo, Yunqing Chen, Lu Zhan, Wenshi Chen
Software Mentions: 2
Published: about 5 years ago
10.1186/1746-6148-9-198
The performance of approximations of farm contiguity compared to contiguity defined using detailed geographical information in two sample areas in Scotland: implications for foot-and-mouth disease modellingCited by: 13
Author(s): Jessica Flood, Thibaud Porphyre, Michael J. Tildesley, Mark E. J. Woolhouse
Software Mentions: 2
Published: almost 12 years ago
10.1186/s12917-017-1103-7
Descriptive and network analyses of the equine contact network at an equestrian show in Ontario, Canada and implications for disease spreadCited by: 8
Author(s): Kelsey L. Spence, Terri L. O’Sullivan, Zvonimir Poljak, Amy L. Greer
Software Mentions: 2
Published: over 7 years ago
10.1186/s12917-016-0835-0
Emergence of Brucella suis in dogs in New South Wales, Australia: clinical findings and implications for zoonotic transmissionCited by: 35
Author(s): Siobhan M. Mor, Anke Wiethoelter, Amanda Lee, Barbara Moloney, Daniel James, Richard Malík
Software Mentions: 2
Published: about 8 years ago
10.1186/1752-0509-8-48
Historical contingency and the gradual evolution of metabolic properties in central carbon and genome-scale metabolismsCited by: 10
Author(s): Aditya Barve, Sayed-Rzgar Hosseini, Olivier Martin, Andreas Wagner
Software Mentions: 2
Published: over 10 years ago
10.1186/1752-0509-4-132
Inferring the conservative causal core of gene regulatory networksCited by: 164
Author(s): Gökmen Altay, Frank Emmert‐Streib
Software Mentions: 2
Published: about 14 years ago
10.1016/j.prevetmed.2018.09.004
New approaches to pharmacosurveillance for monitoring prescription frequency, diversity, and co-prescription in a large sentinel network of companion animal veterinary practices in the United Kingdom, 2014–2016Cited by: 24
Author(s): David A. Singleton, Fernando Sánchez‐Vizcaíno, Elena Arsevska, Susan Dawson, Philip H. Jones, P. J. W. Noble, Gina Pinchbeck, Nicola Williams, Alan Radford
Software Mentions: 2
Published: about 6 years ago
10.1098/rspb.2015.2359
The social and ecological costs of an ‘over-extended' phenotypeCited by: 22
Author(s): Lyndon Alexander Jordan, Sean M. Maguire, Hans A. Hofmann, Masanori Kohda
Software Mentions: 2
Published: almost 9 years ago
10.1098/rspb.2019.0681
Hierarchical social modularity in gorillasCited by: 28
Author(s): Robin E. Morrison, Milou Groenenberg, Thomas Breuer, Marie L. Manguette, Peter Walsh
Software Mentions: 2
Published: over 5 years ago
10.1186/s12918-018-0655-x
Identification of active signaling pathways by integrating gene expression and protein interaction dataCited by: 19
Author(s): Humayun Kabir, Ralph Patrick, Joshua W. K. Ho, Michael D. O’Connor
Software Mentions: 2
Published: almost 6 years ago
10.1186/1752-0509-8-62
Identifying aging-related genes in mouse hippocampus using gateway nodesCited by: 12
Author(s): Kathryn Dempsey, Hesham Ali
Software Mentions: 2
Published: almost 11 years ago
10.1073/pnas.2013391118
Network hubs cease to be influential in the presence of low levels of advertisingCited by: 6
Author(s): Gabriel Rossman, Joan M. Fisher
Software Mentions: 2
Published: almost 4 years ago
10.1002/prot.25257
Aberrant coordination geometries discovered in the most abundant metalloproteinsCited by: 8
Author(s): Sen Yao, Robert M. Flight, Eric C. Rouchka, Hunter N. B. Moseley
Software Mentions: 2
Published: over 7 years ago
10.1186/1752-0509-8-81
Two-layer modular analysis of gene and protein networks in breast cancerCited by: 6
Author(s): Alok Srivastava, Sushil Kumar, Ramakrishna Ramaswamy
Software Mentions: 2
Published: almost 11 years ago
10.1038/s41396-019-0567-9
Long-term nutrient inputs shift soil microbial functional profiles of phosphorus cycling in diverse agroecosystemsCited by: 222
Author(s): Zhongmin Dai, Guofei Liu, Huaihai Chen, Chengrong Chen, Jingkuan Wang, Shaoying Ai, Dan Wei, Daming Li, Bin Ma, Caixian Tang, Philip C. Brookes, Jianming Xu
Software Mentions: 2
Published: almost 5 years ago
10.1186/s12890-018-0603-y
RNAseq analysis of bronchial epithelial cells to identify COPD-associated genes and SNPsCited by: 20
Author(s): Ji‐Youn Yeo, Diego A. Morales, Tian Chen, Erin L. Crawford, Xiaolu Zhang, Thomas M. Blomquist, Albert M. Levin, Pierre P. Massion, Douglas A. Arenberg, David E. Midthun, Peter J. Mazzone, Steven D. Nathan, R. Wainz, Patrick Nana‐Sinkam, Paige F.S. Willey, Taylor J. Arend, Karanbir Padda, Shuhao Qiu, A. V. Federov, Dawn Alita R. Hernandez, Jeffrey R. Hammersley, Youngsook Yoon, Fadi Safi, Sadik A. Khuder, James C. Willey
Software Mentions: 2
Published: over 6 years ago
10.1186/1471-2458-8-308
Worldwide food recall patterns over an eleven month period: A country perspectiveCited by: 11
Author(s): Tamás Nepusz, Andrea Petróczi, Declan P. Naughton
Software Mentions: 2
Published: about 16 years ago
10.1186/s12889-020-8338-0
Transport-related walking among young adults: when and why?Cited by: 3
Author(s): Behrang Assemi, Renee Zahnow, Belén Zapata-Diomedi, Mark Hickman, Jonathan Corcoran
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-020-62523-9
Estimating degree–degree correlation and network cores from the connectivity of high–degree nodes in complex networksCited by: 14
Author(s): Raúl J. Mondragón
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-62204-7
Adaptive rewiring evolves brain-like structure in weighted networksCited by: 5
Author(s): Ilias Rentzeperis, Cees van Leeuwen
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-63222-1
Quantitative Analysis of Salivary Oral Bacteria Associated with Severe Early Childhood Caries and Construction of Caries Assessment ModelCited by: 20
Author(s): Lijuan Zhang, Tongzheng Sun, Pengfei Zhu, Zheng Sun, Shanshan Li, Fan Li, Ying Zhang, Kaixuan Tan, Jie Lu, Rui Yuan, Zhenggang Chen, Dawei Guo, Qingyuan Guo, Fei Teng, Fang Yang
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-64808-5
Fungal communities and their association with nitrogen-fixing bacteria affect early decomposition of Norway spruce deadwoodCited by: 29
Author(s): María Gómez-Brandòn, Maraike Probst, J.A. Siles, Ursula Peintner, Tommaso Bardelli, Markus Egli, Heribert Insam, Judith Ascher‐Jenull
Software Mentions: 2
Published: over 4 years ago
10.1186/s12919-018-0116-y
Application of Bayesian networks to GAW20 genetic and blood lipid dataCited by: 4
Author(s): Richard Howey, Heather J. Cordell
Software Mentions: 2
Published: about 6 years ago
10.1038/s41598-020-68805-6
Minimal fatal shocks in multistable complex networksCited by: 18
Author(s): Lukas Halekotte, Ulrike Feudel
Software Mentions: 2
Published: over 4 years ago
10.1186/s12866-021-02311-1
Effects of mulberry leaf silage on antioxidant and immunomodulatory activity and rumen bacterial community of lambsCited by: 12
Author(s): Bing Wang, Haiwei Luo
Software Mentions: 2
Published: about 3 years ago
10.1186/s12866-021-02092-7
Comparison and interpretation of characteristics of Rhizosphere microbiomes of three blueberry varietiesCited by: 10
Author(s): Yan Zhang, Wei Wang, Zuorui Shen, Jingjing Wang, Yajun Chen, Dong Wang, Gang Liu, Maozhen Han
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-020-70239-z
Pathway-specific model estimation for improved pathway annotation by network crosstalkCited by: 11
Author(s): Miguel Castresana-Aguirre, Erik L. L. Sonnhammer
Software Mentions: 2
Published: over 4 years ago
10.1186/1755-8794-6-S2-S2
Key genes for modulating information flow play a temporal role as breast tumor coexpression networks are dynamically rewired by letrozoleCited by: 5
Author(s): Nadia M. Penrod, Jason H. Moore
Software Mentions: 2
Published: almost 12 years ago
10.1038/s41598-020-74964-3
An equity-oriented rethink of global rankings with complex networks mapping developmentCited by: 11
Author(s): Loredana Bellantuono, A. Monaco, Sabina Tangaro, Nicola Amoroso, Vincenzo Aquaro, R. Bellotti
Software Mentions: 2
Published: about 4 years ago
10.18632/aging.202995
Gene expression signatures differentiating major depressive disorder from subsyndromal symptomatic depressionCited by: 2
Author(s): Guoqin Hu, Shunying Yu, Chen Yuan, Hong Wu, Zuowei Wang, Ran Zhang, Dongxiang Wang, Zezhi Li, Zhenghui Yi, Yiru Fang
Software Mentions: 2
Published: over 3 years ago
10.1186/s12879-019-3734-8
Social network analysis and whole genome sequencing in a cohort study to investigate TB transmission in an educational settingCited by: 15
Author(s): Simon Packer, Claire Green, Ellen Brooks-Pollock, Katerina Chaintarli, Sarah Harrison, Charles R. Beck
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12879-017-2529-z
Patterns of antimicrobial resistance in intensive care unit patients: a study in VietnamCited by: 31
Author(s): Giang M. Tran, Thao P. Ho-Le, Duc T. Ha, Chau H. Tran-Nguyen, Tuyet S. M. Nguyen, Thao Thi Ngoc Pham, Thao Thi Thu Nguyen, Dung Nguyen, Hoa Q. Hoang, Ngoc Van Tran, Tuan V. Nguyen
Software Mentions: 2
Published: over 7 years ago
10.1186/s12913-019-4084-3
Involving end-users in the design of an audit and feedback intervention in the emergency department setting – a mixed methods studyCited by: 16
Author(s): Welmoed K. van Deen, Edward S. Cho, Kathryn Pustolski, Dennis Wixon, Shona Lamb, Thomas W. Valente, Michael Menchine
Software Mentions: 2
Published: over 5 years ago
10.1186/s12913-018-3038-5
On designing of a low leakage patient-centric provider networkCited by: 5
Author(s): Yuchen Zheng, Lin Kang, Thomas White, Jeremy Pickreign, Gigi Yuen-Reed
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-021-87318-4
Fragmented sleep relates to hallucinations across perceptual modalities in the general populationCited by: 5
Author(s): Sanne Brederoo, J N de Boer, Jacqueline de Vries, Mascha M J Linszen, Iris Sommer
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-021-87555-7
Proteomic profiling of the rat hippocampus from the kindling and pilocarpine models of epilepsy: potential targets in calcium regulatory networkCited by: 14
Author(s): Leila Sadeghi, Albert A. Rizvanov, Bahareh Dabirmanesh, И. И. Салафутдинов, Mohammad Sayyah, Amir Shojaei, Javad Zahiri, Javad Mirnajafi‐Zadeh, Babak Khorsand, Khosro Khajeh, Yaghoub Fathollahi
Software Mentions: 2
Published: over 3 years ago
10.1186/s12864-017-3777-4
Functional regression method for whole genome eQTL epistasis analysis with sequencing dataCited by: 3
Author(s): Kelin Xu, Li Jin, Momiao Xiong
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0033799
Hierarchy Measure for Complex NetworksCited by: 193
Author(s): Enys Mones, Lilla Vicsek, Tamás Vicsek
Software Mentions: 2
Published: over 12 years ago
10.1371/journal.pone.0112775
Time Development in the Early History of Social Networks: Link Stabilization, Group Dynamics, and SegregationCited by: 17
Author(s): Jesper Bruun, I. G. Bearden
Software Mentions: 2
Published: about 10 years ago
10.1371/journal.pone.0087042
Positive Network Assortativity of Influenza Vaccination at a High School: Implications for Outbreak Risk and Herd ImmunityCited by: 77
Author(s): Victoria C Barclay, Timo Smieszek, Jianping He, Guohong Cao, Jeanette J. Rainey, Hongjiang Gao, Amra Uzicanin, Marcel Salathé
Software Mentions: 2
Published: almost 11 years ago
10.1371/journal.pone.0223779
Inhibitory interaction networks among coevolved Streptomyces populations from prairie soilsCited by: 5
Author(s): Daniel Schlatter, Zewei Song, Patricia Vaz-Jauri, Linda L. Kinkel
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.pone.0170817
Trends of the World Input and Output Network of Global TradeCited by: 24
Author(s): R. Maria del Rio-Chanona, Jelena Grujić, Henrik Jeldtoft Jensen
Software Mentions: 2
Published: almost 8 years ago
10.1371/journal.pone.0237168
Spatiotemporal network structure among “friends of friends” reveals contagious disease processCited by: 2
Author(s): Carmel Witte, Laura L. Hungerford, Bruce A. Rideout, Rebecca Papendick, James H. Fowler
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0241453
Keystone actors do not act alone: A business ecosystem perspective on sustainability in the global clothing industryCited by: 16
Author(s): Jacob Hileman, Ivan Simon Kallstenius, Tiina Häyhä, Celinda Palm, Sarah Cornell
Software Mentions: 2
Published: about 4 years ago
10.1371/journal.pone.0095049
The Potential Connectivity of Waterhole Networks and the Effectiveness of a Protected Area under Various Drought ScenariosCited by: 22
Author(s): Georgina O’Farrill, Kim Gauthier Schampaert, Bronwyn Rayfield, Örjan Bodin, Sophie Calmé, Raja Sengupta, Andrew Gonzalez
Software Mentions: 2
Published: over 10 years ago