cran: igraph | Projects | Ecosyste.ms: Papers

10.1186/1471-2164-11-380

Response of the mosquito protein interaction network to dengue infection
Cited by: 44
Author(s): Xiang Guo, Yao–Zhong Xu, Guowu Bian, Andrew Pike, Yan Xie, Zhiyong Xi
Software Mentions: 2
Published: over 16 years ago

10.1038/s41598-019-53266-3

Segregation of age-related skin microbiome characteristics by functionality
Cited by: 52
Author(s): Hye-Jin Kim, Jin Ju Kim, Nu Ri Myeong, Taeyune Kim, DooA Kim, Shi An, Hanbyul Kim, Taehun Park, Seongman Jang, Jae Ho Yeon, Ilyoung Kwack, Woo Jun Sul
Software Mentions: 2
Published: almost 7 years ago

10.16910/jemr.11.4.1

Using Eye Movement Data Visualization to Enhance Training of Air Traffic Controllers: A Dynamic Network Approach
Cited by: 5
Author(s): Saptarshi Mandal, Ziho Kang
Software Mentions: 2
Published: about 8 years ago

10.1186/1297-9686-44-17

Genetic diversity and networks of exchange: a combined approach to assess intra-breed diversity
Cited by: 12
Author(s): Jean-François Dumasy, Christel Daniaux, Isabelle Donnay, Philippe Baret
Software Mentions: 2
Published: over 14 years ago

10.1186/1471-2164-16-S7-S18

Systems analysis of gene ontology and biological pathways involved in post-myocardial infarction responses
Cited by: 10
Author(s): Nguyen T. Nguyen, Merry L. Lindsey, Yu Jin
Software Mentions: 2
Published: over 11 years ago

10.1186/gb-2013-14-8-r85

Sustained-input switches for transcription factors and microRNAs are central building blocks of eukaryotic gene circuits
Cited by: 15
Author(s): Molly Megraw, Sayan Mukherjee, Uwe Ohler
Software Mentions: 2
Published: almost 14 years ago

10.1186/s12859-019-2746-0

Topological and functional comparison of community detection algorithms in biological networks
Cited by: 37
Author(s): Sara Rahiminejad, Mano Ram Maurya, Shankar Subramaniam
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0230693

Urban foraging: Land management policy, perspectives, and potential
Cited by: 27
Author(s): Mallika Sardeshpande, Charlie M. Shackleton
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-018-4959-4

Whole genome sequencing and function prediction of 133 gut anaerobes isolated from chicken caecum in pure cultures
Cited by: 85
Author(s): Matej Medvecký, Darina Čejková, Ondřej Polanský, Daniela Karasova, Tereza Kubasová, Alois Čížek, Ivan Rychlı́k
Software Mentions: 2
Published: over 8 years ago

10.1186/s13059-015-0772-4

New genes drive the evolution of gene interaction networks in the human and mouse genomes
Cited by: 85
Author(s): Wenyu Zhang, Patrick Landback, Andrea R. Gschwend, Bairong Shen, Manyuan Long
Software Mentions: 2
Published: about 11 years ago

10.1186/s13059-016-1003-3

Integrating epigenomic data and 3D genomic structure with a new measure of chromatin assortativity
Cited by: 44
Author(s): Véra Pancaldi, Enrique Carrillo de Santa Pau, Biola M. Javierre, David Juan, Peter Fraser, Mikhail Spivakov, Alfonso Valencia, Daniel Rico
Software Mentions: 2
Published: over 10 years ago

10.3390/pathogens10080922

Transmission Dynamics of Bovine Viral Diarrhea Virus in Hokkaido, Japan by Phylogenetic and Epidemiological Network Approaches
Cited by: 3
Author(s): Shizuka Hirose, Kosuke Notsu, Satoshi Itō, Yoshihiro Sakoda, Norikazu Isoda
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pcbi.1003302

A Comprehensive Survey of Small-Molecule Binding Pockets in Proteins
Cited by: 102
Author(s): Mu Gao, Jeffrey Skolnick
Software Mentions: 2
Published: about 13 years ago

10.3390/biology10090921

MIDESP: Mutual Information-Based Detection of Epistatic SNP Pairs for Qualitative and Quantitative Phenotypes
Cited by: 3
Author(s): Felix Heinrich, Faisal Ramzan, Abirami Rajavel, Armin O. Schmitt, Mehmet Gültaş
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0213221

A meta-analysis of multiple matched aCGH/expression cancer datasets reveals regulatory relationships and pathway enrichment of potential oncogenes
Cited by: 1
Author(s): Richard Newton, Lorenz Wernisch
Software Mentions: 2
Published: over 7 years ago

10.1186/2042-6410-4-20

Sex chromosome complement regulates expression of mood-related genes
Cited by: 54
Author(s): Marianne L. Seney, Kokomma I Ekong, Ying Ding, George C. Tseng, Etienne Sibille
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0142108

Network-Based and Binless Frequency Analyses
Cited by: 20
Author(s): Sybil Derrible, Nasir Ahmad
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pbio.1002515

Topological Small-World Organization of the Fibroblastic Reticular Cell Network Determines Lymph Node Functionality
Cited by: 93
Author(s): Mario Novković, Lucas Onder, Jovana Cupovic, Jun Abe, David Bomze, Viviana Cremasco, Elke Scandella, Jens V Stein, Gennady Bocharov, Shannon J. Turley, Burkhard Ludewig
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0040337

Information Processing in Social Insect Networks
Cited by: 96
Author(s): James S. Waters, Jennifer H. Fewell
Software Mentions: 2
Published: over 14 years ago

10.1038/s41598-021-95516-3

Identifying structural connectivity priorities in eastern Paraguay’s fragmented Atlantic Forest
Cited by: 7
Author(s): Noé U. de la Sancha, Sarah A. Boyle, Nancy E. McIntyre
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0187304

Identification of proteins associated with clinical and pathological features of proliferative diabetic retinopathy in vitreous and fibrovascular membranes
Cited by: 46
Author(s): Ingeborg Klaassen, Ewout de Vries, I. M. C. Vogels, Antoine H. C. van Kampen, Machteld I. Bosscha, David Steel, C. J. F. Van Noorden, S.Y. Lesnik–Oberstein, Reinier O. Schlingemann
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0241453

Keystone actors do not act alone: A business ecosystem perspective on sustainability in the global clothing industry
Cited by: 16
Author(s): Jacob Hileman, Ivan Simon Kallstenius, Tiina Häyhä, Celinda Palm, Sarah Cornell
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0194901

Detecting hierarchical levels of connectivity in a population of Acacia tortilis at the northern edge of the species’ global distribution: Combining classical population genetics and network analyses
Cited by: 10
Author(s): Yael S. Rodger, Gili Greenbaum, Micha Silver, Shirli Bar‐David, Gidon Winters
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-021-87555-7

Proteomic profiling of the rat hippocampus from the kindling and pilocarpine models of epilepsy: potential targets in calcium regulatory network
Cited by: 14
Author(s): Leila Sadeghi, Albert A. Rizvanov, Bahareh Dabirmanesh, И. И. Салафутдинов, Mohammad Sayyah, Amir Shojaei, Javad Zahiri, Javad Mirnajafi‐Zadeh, Babak Khorsand, Khosro Khajeh, Yaghoub Fathollahi
Software Mentions: 2
Published: over 5 years ago

10.1155/2009/182689

Network Properties for Ranking Predicted miRNA Targets in Breast Cancer
Cited by: 4
Author(s): Jörg Linde, Björn Olsson, Zelmina Lubovac
Software Mentions: 2
Published: over 17 years ago

10.1186/s13073-014-0052-z

Molecularly and clinically related drugs and diseases are enriched in phenotypically similar drug-disease pairs
Cited by: 15
Author(s): Ingo Vogt, Jeanette Prinz, Mónica Campillos
Software Mentions: 2
Published: about 12 years ago

10.3390/pathogens9121077

Analysis of Risk Factors for African Swine Fever in Lombardy to Identify Pig Holdings and Areas Most at Risk of Introduction in Order to Plan Preventive Measures
Cited by: 2
Author(s): Silvia Bellini, Alessandra Scaburri, Marco Tironi, Stefania Calò
Software Mentions: 2
Published: almost 6 years ago

10.1093/bioinformatics/btt486

Optimizing a global alignment of protein interaction networks
Cited by: 56
Author(s): Leonid Chindelevitch, Chengyu Ma, Chung-Shou Liao, Bonnie Berger
Software Mentions: 2
Published: about 13 years ago

10.1186/s13073-017-0507-0

Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients
Cited by: 23
Author(s): Danesh Moradigaravand, Theodore Gouliouris, Beth Blane, Plamena Naydenova, Catherine Ludden, Charles Crawley, Nicholas M. Brown, M. Estée Török, Julian Parkhill, Sharon J. Peacock
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-021-87318-4

Fragmented sleep relates to hallucinations across perceptual modalities in the general population
Cited by: 5
Author(s): Sanne Brederoo, J N de Boer, Jacqueline de Vries, Mascha M J Linszen, Iris Sommer
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0170817

Trends of the World Input and Output Network of Global Trade
Cited by: 24
Author(s): R. Maria del Rio-Chanona, Jelena Grujić, Henrik Jeldtoft Jensen
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0046156

Combining Epidemiological and Genetic Networks Signifies the Importance of Early Treatment in HIV-1 Transmission
Cited by: 16
Author(s): Narges Zarrabi, Mattia Prosperi, R.G. Belleman, Manuela Colafigli, Andrea De Luca, Peter M. A. Sloot
Software Mentions: 2
Published: about 14 years ago

10.1038/s41598-020-62523-9

Estimating degree–degree correlation and network cores from the connectivity of high–degree nodes in complex networks
Cited by: 14
Author(s): Raúl J. Mondragón
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-62204-7

Adaptive rewiring evolves brain-like structure in weighted networks
Cited by: 5
Author(s): Ilias Rentzeperis, Cees van Leeuwen
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0228613

Tropical marine sciences: Knowledge production in a web of path dependencies
Cited by: 22
Author(s): Stefan Partelow, Anna‐Katharina Hornidge, Paula Sobral, Moritz Stäbler, Achim Schlüter
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-63222-1

Quantitative Analysis of Salivary Oral Bacteria Associated with Severe Early Childhood Caries and Construction of Caries Assessment Model
Cited by: 20
Author(s): Lijuan Zhang, Tongzheng Sun, Pengfei Zhu, Zheng Sun, Shanshan Li, Fan Li, Ying Zhang, Kaixuan Tan, Jie Lu, Rui Yuan, Zhenggang Chen, Dawei Guo, Qingyuan Guo, Fei Teng, Fang Yang
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0237864

The dynamics of global R&D collaboration networks in ICT: Does China catch up with the US?
Cited by: 5
Author(s): Thomas Scherngell, Charlotte Rohde, Martina Neuländtner
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0013139

Inference of Surface Membrane Factors of HIV-1 Infection through Functional Interaction Networks
Cited by: 9
Author(s): Samira Jaeger, Gökhan Ertaylan, David van Dijk, Ulf Leser, Peter M. A. Sloot
Software Mentions: 2
Published: about 16 years ago

10.1371/journal.pone.0142407

Coevolved Mutations Reveal Distinct Architectures for Two Core Proteins in the Bacterial Flagellar Motor
Cited by: 8
Author(s): Alessandro Pandini, Jens Kleinjung, Shafqat Rasool, Shahid Khan
Software Mentions: 2
Published: almost 11 years ago

10.1038/s41598-020-64808-5

Fungal communities and their association with nitrogen-fixing bacteria affect early decomposition of Norway spruce deadwood
Cited by: 29
Author(s): María Gómez-Brandòn, Maraike Probst, J.A. Siles, Ursula Peintner, Tommaso Bardelli, Markus Egli, Heribert Insam, Judith Ascher‐Jenull
Software Mentions: 2
Published: over 6 years ago

10.1093/gigascience/gix054

iCAVE: an open source tool for visualizing biomolecular networks in 3D, stereoscopic 3D and immersive 3D
Cited by: 20
Author(s): Vaja Liluashvili, Selim Kalayci, Eugene Fluder, Manda Wilson, Aaron Gabow, Zeynep H. Gümüş
Software Mentions: 2
Published: over 9 years ago

10.1186/1746-6148-9-198

The performance of approximations of farm contiguity compared to contiguity defined using detailed geographical information in two sample areas in Scotland: implications for foot-and-mouth disease modelling
Cited by: 13
Author(s): Jessica Flood, Thibaud Porphyre, Michael J. Tildesley, Mark E. J. Woolhouse
Software Mentions: 2
Published: almost 14 years ago

10.7717/peerj.8749

Potential of the economic valuation of soil-based ecosystem services to inform sustainable soil management and policy
Cited by: 20
Author(s): Bartosz Bartkowski, Stephan Bartke, Katharina Helming, Carsten Paul, Anja-Kristina Techen, Bernd Hansjürgens
Software Mentions: 2
Published: over 6 years ago

10.1186/s12917-017-1103-7

Descriptive and network analyses of the equine contact network at an equestrian show in Ontario, Canada and implications for disease spread
Cited by: 8
Author(s): Kelsey L. Spence, Terri L. O’Sullivan, Zvonimir Poljak, Amy L. Greer
Software Mentions: 2
Published: over 9 years ago

10.1186/s12917-016-0835-0

Emergence of Brucella suis in dogs in New South Wales, Australia: clinical findings and implications for zoonotic transmission
Cited by: 35
Author(s): Siobhan M. Mor, Anke Wiethoelter, Amanda Lee, Barbara Moloney, Daniel James, Richard Malík
Software Mentions: 2
Published: about 10 years ago

10.1186/1752-0509-8-48

Historical contingency and the gradual evolution of metabolic properties in central carbon and genome-scale metabolisms
Cited by: 10
Author(s): Aditya Barve, Sayed-Rzgar Hosseini, Olivier Martin, Andreas Wagner
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0099502

Co-Authorship and Bibliographic Coupling Network Effects on Citations
Cited by: 86
Author(s): Claudio Biscaro, Carlo Giupponi
Software Mentions: 2
Published: over 12 years ago

10.1093/gigascience/giaa019

Comparative proteomics analysis of Tibetan hull-less barley under osmotic stress via data-independent acquisition mass spectrometry
Cited by: 17
Author(s): Yulin Wang, Zha Sang, Shaohang Xu, Qijun Xu, Xingquan Zeng, Dunzhu Jabu, Hongjun Yuan
Software Mentions: 2
Published: over 6 years ago

10.1186/1752-0509-4-132

Inferring the conservative causal core of gene regulatory networks
Cited by: 164
Author(s): Gökmen Altay, Frank Emmert‐Streib
Software Mentions: 2
Published: about 16 years ago

10.1186/s41256-018-0067-x

Scientific authorship and collaboration network analysis on malaria research in Benin: papers indexed in the web of science (1996–2016)
Cited by: 15
Author(s): Roseric Azondékon, Zachary J. Harper, Fiacre Agossa, Charles M. Welzig, Susan McRoy
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0252470

Environmental drivers of reef manta ray (Mobula alfredi) visitation patterns to key aggregation habitats in the Maldives
Cited by: 6
Author(s): Joanna L. Harris, Guy M. W. Stevens
Software Mentions: 2
Published: over 5 years ago

10.1186/s13075-016-0914-4

Stress granules and RNA processing bodies are novel autoantibody targets in systemic sclerosis
Cited by: 17
Author(s): Michael E. Johnson, Andrew V. Grassetti, Jaclyn N. Taroni, Shawn M. Lyons, Devin K. Schweppe, Jessica Gordon, Robert Spiera, Robert Lafyatis, Paul Anderson, Scott A. Gerber, Michael L. Whitfield
Software Mentions: 2
Published: almost 11 years ago

Projects: cran: igraph

Science Score: 100/100

Bonuses:

Papers Mentioning igraph 1,555