cran: igraph | Projects | Ecosyste.ms: Papers

10.1038/s41598-018-38329-1

Inferring pathogen-host interactions between Leptospira interrogans and Homo sapiens using network theory
Cited by: 18
Author(s): Swapnil Kumar, Kumari Snehkant Lata, Priyanka Sharma, Shivarudrappa B. Bhairappanavar, Subhash Soni, Jayashankar Das
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-37976-8

Unique skull network complexity of Tyrannosaurus rex among land vertebrates
Cited by: 19
Author(s): Ingmar Werneburg, Borja Esteve‐Altava, Joana Bruno, Marta Torres Ladeira, Rui Diogo
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-38658-9

Validation and quality assessment of macromolecular structures using complex network analysis
Cited by: 21
Author(s): Jure Pražnikar, Miloš Tomić, Dušan Turk
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-43596-7

The impact of rare but severe vaccine adverse events on behaviour-disease dynamics: a network model
Cited by: 28
Author(s): S.K. Bhattacharyya, Amit Vutha, Chris T. Bauch
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-44314-z

First use of anatomical networks to study modularity and integration of heads, forelimbs and hindlimbs in abnormal anencephalic and cyclopic vs normal human development
Cited by: 14
Author(s): Rui Diogo, Janine M. Ziermann, Christopher M. Smith, Malak Alghamdi, Jose S. M. Fuentes, André J. Duerinckx
Software Mentions: 2
Published: over 7 years ago

10.1186/s12918-018-0655-x

Identification of active signaling pathways by integrating gene expression and protein interaction data
Cited by: 19
Author(s): Humayun Kabir, Ralph Patrick, Joshua W. K. Ho, Michael D. O’Connor
Software Mentions: 2
Published: over 7 years ago

10.1186/1752-0509-8-62

Identifying aging-related genes in mouse hippocampus using gateway nodes
Cited by: 12
Author(s): Kathryn Dempsey, Hesham Ali
Software Mentions: 2
Published: over 12 years ago

10.1186/1752-0509-8-81

Two-layer modular analysis of gene and protein networks in breast cancer
Cited by: 6
Author(s): Alok Srivastava, Sushil Kumar, Ramakrishna Ramaswamy
Software Mentions: 2
Published: over 12 years ago

10.1038/s41598-019-53266-3

Segregation of age-related skin microbiome characteristics by functionality
Cited by: 52
Author(s): Hye-Jin Kim, Jin Ju Kim, Nu Ri Myeong, Taeyune Kim, DooA Kim, Shi An, Hanbyul Kim, Taehun Park, Seongman Jang, Jae Ho Yeon, Ilyoung Kwack, Woo Jun Sul
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41396-019-0567-9

Long-term nutrient inputs shift soil microbial functional profiles of phosphorus cycling in diverse agroecosystems
Cited by: 222
Author(s): Zhongmin Dai, Guofei Liu, Huaihai Chen, Chengrong Chen, Jingkuan Wang, Shaoying Ai, Dan Wei, Daming Li, Bin Ma, Caixian Tang, Philip C. Brookes, Jianming Xu
Software Mentions: 2
Published: over 6 years ago

10.1186/s12890-018-0603-y

RNAseq analysis of bronchial epithelial cells to identify COPD-associated genes and SNPs
Cited by: 20
Author(s): Ji‐Youn Yeo, Diego A. Morales, Tian Chen, Erin L. Crawford, Xiaolu Zhang, Thomas M. Blomquist, Albert M. Levin, Pierre P. Massion, Douglas A. Arenberg, David E. Midthun, Peter J. Mazzone, Steven D. Nathan, R. Wainz, Patrick Nana‐Sinkam, Paige F.S. Willey, Taylor J. Arend, Karanbir Padda, Shuhao Qiu, A. V. Federov, Dawn Alita R. Hernandez, Jeffrey R. Hammersley, Youngsook Yoon, Fadi Safi, Sadik A. Khuder, James C. Willey
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2458-8-308

Worldwide food recall patterns over an eleven month period: A country perspective
Cited by: 11
Author(s): Tamás Nepusz, Andrea Petróczi, Declan P. Naughton
Software Mentions: 2
Published: almost 18 years ago

10.1186/s12889-020-8338-0

Transport-related walking among young adults: when and why?
Cited by: 3
Author(s): Behrang Assemi, Renee Zahnow, Belén Zapata-Diomedi, Mark Hickman, Jonathan Corcoran
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-62523-9

Estimating degree–degree correlation and network cores from the connectivity of high–degree nodes in complex networks
Cited by: 14
Author(s): Raúl J. Mondragón
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-62204-7

Adaptive rewiring evolves brain-like structure in weighted networks
Cited by: 5
Author(s): Ilias Rentzeperis, Cees van Leeuwen
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-63222-1

Quantitative Analysis of Salivary Oral Bacteria Associated with Severe Early Childhood Caries and Construction of Caries Assessment Model
Cited by: 20
Author(s): Lijuan Zhang, Tongzheng Sun, Pengfei Zhu, Zheng Sun, Shanshan Li, Fan Li, Ying Zhang, Kaixuan Tan, Jie Lu, Rui Yuan, Zhenggang Chen, Dawei Guo, Qingyuan Guo, Fei Teng, Fang Yang
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-64808-5

Fungal communities and their association with nitrogen-fixing bacteria affect early decomposition of Norway spruce deadwood
Cited by: 29
Author(s): María Gómez-Brandòn, Maraike Probst, J.A. Siles, Ursula Peintner, Tommaso Bardelli, Markus Egli, Heribert Insam, Judith Ascher‐Jenull
Software Mentions: 2
Published: over 6 years ago

10.1186/s12919-018-0116-y

Application of Bayesian networks to GAW20 genetic and blood lipid data
Cited by: 4
Author(s): Richard Howey, Heather J. Cordell
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-020-68805-6

Minimal fatal shocks in multistable complex networks
Cited by: 18
Author(s): Lukas Halekotte, Ulrike Feudel
Software Mentions: 2
Published: about 6 years ago

10.1186/s12866-021-02311-1

Effects of mulberry leaf silage on antioxidant and immunomodulatory activity and rumen bacterial community of lambs
Cited by: 12
Author(s): Bing Wang, Haiwei Luo
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12866-021-02092-7

Comparison and interpretation of characteristics of Rhizosphere microbiomes of three blueberry varieties
Cited by: 10
Author(s): Yan Zhang, Wei Wang, Zuorui Shen, Jingjing Wang, Yajun Chen, Dong Wang, Gang Liu, Maozhen Han
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-70239-z

Pathway-specific model estimation for improved pathway annotation by network crosstalk
Cited by: 11
Author(s): Miguel Castresana-Aguirre, Erik L. L. Sonnhammer
Software Mentions: 2
Published: about 6 years ago

10.1186/1755-8794-6-S2-S2

Key genes for modulating information flow play a temporal role as breast tumor coexpression networks are dynamically rewired by letrozole
Cited by: 5
Author(s): Nadia M. Penrod, Jason H. Moore
Software Mentions: 2
Published: over 13 years ago

10.1038/s41598-020-74964-3

An equity-oriented rethink of global rankings with complex networks mapping development
Cited by: 11
Author(s): Loredana Bellantuono, A. Monaco, Sabina Tangaro, Nicola Amoroso, Vincenzo Aquaro, R. Bellotti
Software Mentions: 2
Published: almost 6 years ago

10.18632/aging.202995

Gene expression signatures differentiating major depressive disorder from subsyndromal symptomatic depression
Cited by: 2
Author(s): Guoqin Hu, Shunying Yu, Chen Yuan, Hong Wu, Zuowei Wang, Ran Zhang, Dongxiang Wang, Zezhi Li, Zhenghui Yi, Yiru Fang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12879-019-3734-8

Social network analysis and whole genome sequencing in a cohort study to investigate TB transmission in an educational setting
Cited by: 15
Author(s): Simon Packer, Claire Green, Ellen Brooks-Pollock, Katerina Chaintarli, Sarah Harrison, Charles R. Beck
Software Mentions: 2
Published: over 7 years ago

10.1186/s12879-017-2529-z

Patterns of antimicrobial resistance in intensive care unit patients: a study in Vietnam
Cited by: 31
Author(s): Giang M. Tran, Thao P. Ho-Le, Duc T. Ha, Chau H. Tran-Nguyen, Tuyet S. M. Nguyen, Thao Thi Ngoc Pham, Thao Thi Thu Nguyen, Dung Nguyen, Hoa Q. Hoang, Ngoc Van Tran, Tuan V. Nguyen
Software Mentions: 2
Published: about 9 years ago

10.1186/s12913-019-4084-3

Involving end-users in the design of an audit and feedback intervention in the emergency department setting – a mixed methods study
Cited by: 16
Author(s): Welmoed K. van Deen, Edward S. Cho, Kathryn Pustolski, Dennis Wixon, Shona Lamb, Thomas W. Valente, Michael Menchine
Software Mentions: 2
Published: over 7 years ago

10.1186/s12913-018-3038-5

On designing of a low leakage patient-centric provider network
Cited by: 5
Author(s): Yuchen Zheng, Lin Kang, Thomas White, Jeremy Pickreign, Gigi Yuen-Reed
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-021-87318-4

Fragmented sleep relates to hallucinations across perceptual modalities in the general population
Cited by: 5
Author(s): Sanne Brederoo, J N de Boer, Jacqueline de Vries, Mascha M J Linszen, Iris Sommer
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-87555-7

Proteomic profiling of the rat hippocampus from the kindling and pilocarpine models of epilepsy: potential targets in calcium regulatory network
Cited by: 14
Author(s): Leila Sadeghi, Albert A. Rizvanov, Bahareh Dabirmanesh, И. И. Салафутдинов, Mohammad Sayyah, Amir Shojaei, Javad Zahiri, Javad Mirnajafi‐Zadeh, Babak Khorsand, Khosro Khajeh, Yaghoub Fathollahi
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0112775

Time Development in the Early History of Social Networks: Link Stabilization, Group Dynamics, and Segregation
Cited by: 17
Author(s): Jesper Bruun, I. G. Bearden
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0087042

Positive Network Assortativity of Influenza Vaccination at a High School: Implications for Outbreak Risk and Herd Immunity
Cited by: 77
Author(s): Victoria C Barclay, Timo Smieszek, Jianping He, Guohong Cao, Jeanette J. Rainey, Hongjiang Gao, Amra Uzicanin, Marcel Salathé
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0237168

Spatiotemporal network structure among “friends of friends” reveals contagious disease process
Cited by: 2
Author(s): Carmel Witte, Laura L. Hungerford, Bruce A. Rideout, Rebecca Papendick, James H. Fowler
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0033799

Hierarchy Measure for Complex Networks
Cited by: 193
Author(s): Enys Mones, Lilla Vicsek, Tamás Vicsek
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0095049

The Potential Connectivity of Waterhole Networks and the Effectiveness of a Protected Area under Various Drought Scenarios
Cited by: 22
Author(s): Georgina O’Farrill, Kim Gauthier Schampaert, Bronwyn Rayfield, Örjan Bodin, Sophie Calmé, Raja Sengupta, Andrew Gonzalez
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0195161

In vitro co-cultures of human gut bacterial species as predicted from co-occurrence network analysis
Cited by: 39
Author(s): Dás P, Boyang Ji, Petia Kovatcheva‐Datchary, Fredrik Bäckhed, Jens Nielsen
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0140085

Seasonal Influenza Vaccination amongst Medical Students: A Social Network Analysis Based on a Cross-Sectional Study
Cited by: 19
Author(s): Rhiannon Edge, Joseph J. Heath, Barry Rowlingson, Thomas Keegan, Rachel Isba
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0223779

Inhibitory interaction networks among coevolved Streptomyces populations from prairie soils
Cited by: 5
Author(s): Daniel Schlatter, Zewei Song, Patricia Vaz-Jauri, Linda L. Kinkel
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0170817

Trends of the World Input and Output Network of Global Trade
Cited by: 24
Author(s): R. Maria del Rio-Chanona, Jelena Grujić, Henrik Jeldtoft Jensen
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0241453

Keystone actors do not act alone: A business ecosystem perspective on sustainability in the global clothing industry
Cited by: 16
Author(s): Jacob Hileman, Ivan Simon Kallstenius, Tiina Häyhä, Celinda Palm, Sarah Cornell
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0121002

Fast Approximate Quadratic Programming for Graph Matching
Cited by: 115
Author(s): Joshua T. Vogelstein, John M. Conroy, Vince Lyzinski, Louis J. Podrazik, Steven G. Kratzer, Eric T. Harley, Donniell E. Fishkind, R. Jacob Vogelstein, Carey E. Priebe
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0172867

Network analysis of wildfire transmission and implications for risk governance
Cited by: 71
Author(s): Alan A. Ager, Cody Evers, Michelle A. Day, Haiganoush K. Preisler, Ana M. G. Barros, Max Nielsen-Pincus
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0213741

Movements of scalloped hammerhead sharks (Sphyrna lewini) at Cocos Island, Costa Rica and between oceanic islands in the Eastern Tropical Pacific
Cited by: 37
Author(s): Elena Nalesso, Alex Hearn, Óscar Sosa-Nishizaki, Todd Steiner, Alex Antoniou, Andrew Reid, Sandra Bessudo, Germán Soler, A. Peter Klimley, Frida Lara, James T. Ketchum, Rándall Arauz
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0161474

BRIDES: A New Fast Algorithm and Software for Characterizing Evolving Similarity Networks Using Breakthroughs, Roadblocks, Impasses, Detours, Equals and Shortcuts
Cited by: 4
Author(s): Étienne Lord, Margaux Le Cam, Éric Bapteste, Raphaël Méheust, Vladimir Makarenkov, François‐Joseph Lapointe
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12864-017-3777-4

Functional regression method for whole genome eQTL epistasis analysis with sequencing data
Cited by: 3
Author(s): Kelin Xu, Li Jin, Momiao Xiong
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0237471

Diffusing science through social networks: The case of breastfeeding communication on Twitter
Cited by: 9
Author(s): Sara Moukarzel, Martin Rehm, Miguel del Fresno, Alan J. Daly
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0007441

Stability of Metabolic Correlations under Changing Environmental Conditions in Escherichia coli – A Systems Approach
Cited by: 34
Author(s): Jędrzej Szymański, Szymon Józefczuk, Zoran Nikoloski, Joachim Selbig, Victoria J. Nikiforova, Gareth Catchpole, Lothar Willmitzer
Software Mentions: 2
Published: almost 17 years ago

10.1371/journal.pone.0200079

Urothelial bladder cancer may suppress perforin expression in CD8+ T cells by an ICAM-1/TGFβ2 mediated pathway
Cited by: 14
Author(s): Ciputra Adijaya Hartana, Emma Ahlén Bergman, Ali Zirakzadeh, David H. Krantz, Malin E. Winerdal, Max Winerdal, Markus Johansson, Farhood Alamdari, Tomasz Jakubczyk, Hans Glise, Katrine Riklund, Amir Sherif, Ola Winqvist
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0158161

How to Study the City on Instagram
Cited by: 54
Author(s): John D. Boy, Justus Uitermark
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0213221

A meta-analysis of multiple matched aCGH/expression cancer datasets reveals regulatory relationships and pathway enrichment of potential oncogenes
Cited by: 1
Author(s): Richard Newton, Lorenz Wernisch
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0160919

Anomaly Detection in Host Signaling Pathways for the Early Prognosis of Acute Infection
Cited by: 12
Author(s): Kun Wang, Stanley Langevin, Corey S. O’Hern, Mark D. Shattuck, Serenity Ogle, Adriana Forero, Juliet Morrison, Richard A. Slayden, Michael G. Katze, Michael Kirby
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0016932

Novel Feature for Catalytic Protein Residues Reflecting Interactions with Other Residues
Cited by: 11
Author(s): Yizhou Li, Gongbing Li, Zhining Wen, Hui Yin, Manman Hu, Jiamin Xiao, Menglong Li
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0205295

Combining multi-OMICs information to identify key-regulator genes for pleiotropic effect on fertility and production traits in beef cattle
Cited by: 31
Author(s): Pablo Augusto de Souza Fonseca, Samir Id‐Lahoucine, Antônio Reverter, Juan F. Medrano, M. R. S. Fortes, J. Casellas, F. Miglior, Luiz F. Brito, Maria Raquel Santos Carvalho, F.S. Schenkel, Loan Nguyen, Laércio R. Porto-Neto, M. G. Thomas, Ángela Cánovas
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0190001

Graph complexity analysis identifies an ETV5 tumor-specific network in human and murine low-grade glioma
Cited by: 5
Author(s): Yuan Pan, Christina Durón, Erin C. Bush, Yu Ma, Peter A. Sims, David H. Gutmann, Ami Radunskaya, Johanna Hardin
Software Mentions: 2
Published: over 8 years ago

Projects: cran: igraph

Science Score: 100/100

Bonuses:

Papers Mentioning igraph 1,555