cran: igraph | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0223779

Inhibitory interaction networks among coevolved Streptomyces populations from prairie soils
Cited by: 5
Author(s): Daniel Schlatter, Zewei Song, Patricia Vaz-Jauri, Linda L. Kinkel
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0210148

Validation of modified radio-frequency identification tag firmware, using an equine population case study
Cited by: 4
Author(s): Rachael M. Milwid, Terri L. O’Sullivan, Zvonimir Poljak, Marek Laskowski, Amy L. Greer
Software Mentions: 2
Published: almost 8 years ago

10.1093/bioinformatics/btt486

Optimizing a global alignment of protein interaction networks
Cited by: 56
Author(s): Leonid Chindelevitch, Chengyu Ma, Chung-Shou Liao, Bonnie Berger
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0064317

An Open-Access Modeled Passenger Flow Matrix for the Global Air Network in 2010
Cited by: 37
Author(s): Zhengjing Huang, Wu Xiao, Andrés J. García, Timothy J. Fik, Andrew J. Tatem
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0199530

A cytokine protein-protein interaction network for identifying key molecules in rheumatoid arthritis
Cited by: 10
Author(s): Venugopal Panga, Srivatsan Raghunathan
Software Mentions: 2
Published: over 8 years ago

10.1155/2014/487069

An Improved<i>Physarum polycephalum</i>Algorithm for the Shortest Path Problem
Cited by: 10
Author(s): Xiaoge Zhang, Qing Wang, Andrew Adamatzky, Felix T.S. Chan, Sankaran Mahadevan, Yong Deng
Software Mentions: 2
Published: almost 13 years ago

10.3389/fmicb.2017.00545

Genetic Characterization of the Exceptionally High Heat Resistance of the Non-toxic Surrogate Clostridium sporogenes PA 3679
Cited by: 16
Author(s): Robert R. Butler, Kristin M. Schill, Yun Wang, Jean‐François Pombert
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0140030

Anatomical Network Comparison of Human Upper and Lower, Newborn and Adult, and Normal and Abnormal Limbs, with Notes on Development, Pathology and Limb Serial Homology vs. Homoplasy
Cited by: 28
Author(s): Rui Diogo, Borja Esteve‐Altava, Christopher M. Smith, Julia C. Boughner, Diego Rasskin‐Gutman
Software Mentions: 2
Published: about 11 years ago

10.1186/1471-2105-11-343

A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties of functional gene network
Cited by: 92
Author(s): Zhu-Hong You, Zhimin Yin, Kyungsook Han, Dongqing Huang, Xiaobo Zhou
Software Mentions: 2
Published: over 16 years ago

10.1371/journal.pone.0213039

GenomeGraphR: A user-friendly open-source web application for foodborne pathogen whole genome sequencing data integration, analysis, and visualization
Cited by: 20
Author(s): Moez Sanaa, Régis Pouillot, Francisco Garcés Vega, Errol Strain, Jane M. Van Doren
Software Mentions: 2
Published: over 7 years ago

10.1186/s40695-020-00060-1

Racial differences in lifestyle, demographic, and health factors associated with quality of life (QoL) in midlife women
Cited by: 4
Author(s): Brandi Patrice Smith, Esmeralda Cardoso-Mendoza, Jodi A. Flaws, Zeynep Madak-Erdoğan
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0176751

Using null models to infer microbial co-occurrence networks
Cited by: 64
Author(s): Nora Connor, Albert Barberán, Aaron Clauset
Software Mentions: 2
Published: over 9 years ago

10.1186/1746-6148-9-198

The performance of approximations of farm contiguity compared to contiguity defined using detailed geographical information in two sample areas in Scotland: implications for foot-and-mouth disease modelling
Cited by: 13
Author(s): Jessica Flood, Thibaud Porphyre, Michael J. Tildesley, Mark E. J. Woolhouse
Software Mentions: 2
Published: almost 14 years ago

10.3389/fmicb.2019.03123

The cyl Genes Reveal the Biosynthetic and Evolutionary Origins of the Group B Streptococcus Hemolytic Lipid, Granadaene
Cited by: 13
Author(s): Blair Armistead, Christopher Whidbey, Lakshminarayan M. Iyer, Pilar Herrero-Foncubierta, Phoenicia Quach, Alí Haïdour, L. Aravind, Juan M. Cuerva, Heather B. Jaspan, Lakshmi Rajagopal
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2020.01361

Scoring Species for Synthetic Community Design: Network Analyses of Functional Core Microbiomes
Cited by: 22
Author(s): Hirokazu Toju, Masato S. Abe, Chiharu Ishii, Haruo Yoshiki, Hiroaki Fujita, Shinji Fukuda
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0248126

Topological indexes and community structure for urban mobility networks: Variations in a business day
Cited by: 3
Author(s): Jéssica D. Lamosa, Lívia Rodrigues Tomás, Marcos G. Quiles, Luciana de Resende Londe, Leonardo B. L. Santos, Elbert E. N. Macau
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0252152

Social network analysis and whole-genome sequencing to evaluate disease transmission in a large, dynamic population: A study of avian mycobacteriosis in zoo birds
Cited by: 2
Author(s): Carmel Witte, James H. Fowler, Wayne Pfeiffer, Laura L. Hungerford, Joséphine Braun, Jennifer Burchell, Rebecca Papendick, Bruce A. Rideout
Software Mentions: 2
Published: over 5 years ago

10.1186/s12859-020-03702-3

ImmunoGlobe: enabling systems immunology with a manually curated intercellular immune interaction network
Cited by: 6
Author(s): Michelle Atallah, Varun Tandon, Kamir J Hiam-Galvez, Hunter Boyce, Michelle Hori, Waleed Atallah, Matthew H. Spitzer, Edgar G. Engleman, Parag Mallick
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2021.632695

Evaluation of the Inflammatory Cytokines and IL-10 Network in Individuals Co-infected With Human T-Cell Lymphotropic Virus and Hepatitis C Virus (HTLV/HCV)
Cited by: 1
Author(s): Felicidade Mota Pereira, Pablo Ivan Pereira Ramos, Monique Lírio, Ajax Mercês Atta, Ilka Regina Souza de Oliveira, Fabio Carneiro Vosqui Nascimento, Marcelo Costa Silva, Bernardo Galvão–Castro, Maria Fernanda Rios Grassi
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0191604

Resolution of ranking hierarchies in directed networks
Cited by: 12
Author(s): Elisa Letizia, Paolo Barucca, Fabrizio Lillo
Software Mentions: 2
Published: over 8 years ago

10.1186/s12917-017-1103-7

Descriptive and network analyses of the equine contact network at an equestrian show in Ontario, Canada and implications for disease spread
Cited by: 8
Author(s): Kelsey L. Spence, Terri L. O’Sullivan, Zvonimir Poljak, Amy L. Greer
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2018.02237

Diversity of Yeasts and Molds by Culture-Dependent and Culture-Independent Methods for Mycobiome Surveillance of Traditionally Prepared Dried Starters for the Production of Indian Alcoholic Beverages
Cited by: 34
Author(s): Shankar Prasad Sha, Mangesh V. Suryavanshi, Kunal Jani, Avinash Sharma, Yogesh S. Shouche, Jyoti Prakash Tamang
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-020-62523-9

Estimating degree–degree correlation and network cores from the connectivity of high–degree nodes in complex networks
Cited by: 14
Author(s): Raúl J. Mondragón
Software Mentions: 2
Published: over 6 years ago

10.1186/s12917-016-0835-0

Emergence of Brucella suis in dogs in New South Wales, Australia: clinical findings and implications for zoonotic transmission
Cited by: 35
Author(s): Siobhan M. Mor, Anke Wiethoelter, Amanda Lee, Barbara Moloney, Daniel James, Richard Malík
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0142108

Network-Based and Binless Frequency Analyses
Cited by: 20
Author(s): Sybil Derrible, Nasir Ahmad
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0187304

Identification of proteins associated with clinical and pathological features of proliferative diabetic retinopathy in vitreous and fibrovascular membranes
Cited by: 46
Author(s): Ingeborg Klaassen, Ewout de Vries, I. M. C. Vogels, Antoine H. C. van Kampen, Machteld I. Bosscha, David Steel, C. J. F. Van Noorden, S.Y. Lesnik–Oberstein, Reinier O. Schlingemann
Software Mentions: 2
Published: almost 9 years ago

10.1155/2009/182689

Network Properties for Ranking Predicted miRNA Targets in Breast Cancer
Cited by: 4
Author(s): Jörg Linde, Björn Olsson, Zelmina Lubovac
Software Mentions: 2
Published: over 17 years ago

10.1186/1752-0509-8-48

Historical contingency and the gradual evolution of metabolic properties in central carbon and genome-scale metabolisms
Cited by: 10
Author(s): Aditya Barve, Sayed-Rzgar Hosseini, Olivier Martin, Andreas Wagner
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0046156

Combining Epidemiological and Genetic Networks Signifies the Importance of Early Treatment in HIV-1 Transmission
Cited by: 16
Author(s): Narges Zarrabi, Mattia Prosperi, R.G. Belleman, Manuela Colafigli, Andrea De Luca, Peter M. A. Sloot
Software Mentions: 2
Published: about 14 years ago

10.1038/s41598-020-62204-7

Adaptive rewiring evolves brain-like structure in weighted networks
Cited by: 5
Author(s): Ilias Rentzeperis, Cees van Leeuwen
Software Mentions: 2
Published: over 6 years ago

10.1186/1752-0509-4-132

Inferring the conservative causal core of gene regulatory networks
Cited by: 164
Author(s): Gökmen Altay, Frank Emmert‐Streib
Software Mentions: 2
Published: about 16 years ago

10.1371/journal.pone.0228613

Tropical marine sciences: Knowledge production in a web of path dependencies
Cited by: 22
Author(s): Stefan Partelow, Anna‐Katharina Hornidge, Paula Sobral, Moritz Stäbler, Achim Schlüter
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0237864

The dynamics of global R&D collaboration networks in ICT: Does China catch up with the US?
Cited by: 5
Author(s): Thomas Scherngell, Charlotte Rohde, Martina Neuländtner
Software Mentions: 2
Published: about 6 years ago

10.3389/fnins.2015.00472

Identification of Voxels Confounded by Venous Signals Using Resting-State fMRI Functional Connectivity Graph Community Identification
Cited by: 9
Author(s): Klaudius Kalcher, Roland N. Boubela, Wolfgang Huf, Christian Našel, Ewald Moser
Software Mentions: 2
Published: almost 11 years ago

10.1038/s41598-020-63222-1

Quantitative Analysis of Salivary Oral Bacteria Associated with Severe Early Childhood Caries and Construction of Caries Assessment Model
Cited by: 20
Author(s): Lijuan Zhang, Tongzheng Sun, Pengfei Zhu, Zheng Sun, Shanshan Li, Fan Li, Ying Zhang, Kaixuan Tan, Jie Lu, Rui Yuan, Zhenggang Chen, Dawei Guo, Qingyuan Guo, Fei Teng, Fang Yang
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0205295

Combining multi-OMICs information to identify key-regulator genes for pleiotropic effect on fertility and production traits in beef cattle
Cited by: 31
Author(s): Pablo Augusto de Souza Fonseca, Samir Id‐Lahoucine, Antônio Reverter, Juan F. Medrano, M. R. S. Fortes, J. Casellas, F. Miglior, Luiz F. Brito, Maria Raquel Santos Carvalho, F.S. Schenkel, Loan Nguyen, Laércio R. Porto-Neto, M. G. Thomas, Ángela Cánovas
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0013139

Inference of Surface Membrane Factors of HIV-1 Infection through Functional Interaction Networks
Cited by: 9
Author(s): Samira Jaeger, Gökhan Ertaylan, David van Dijk, Ulf Leser, Peter M. A. Sloot
Software Mentions: 2
Published: about 16 years ago

10.1038/s41598-020-64808-5

Fungal communities and their association with nitrogen-fixing bacteria affect early decomposition of Norway spruce deadwood
Cited by: 29
Author(s): María Gómez-Brandòn, Maraike Probst, J.A. Siles, Ursula Peintner, Tommaso Bardelli, Markus Egli, Heribert Insam, Judith Ascher‐Jenull
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0033799

Hierarchy Measure for Complex Networks
Cited by: 193
Author(s): Enys Mones, Lilla Vicsek, Tamás Vicsek
Software Mentions: 2
Published: over 14 years ago

10.1186/s13075-016-0914-4

Stress granules and RNA processing bodies are novel autoantibody targets in systemic sclerosis
Cited by: 17
Author(s): Michael E. Johnson, Andrew V. Grassetti, Jaclyn N. Taroni, Shawn M. Lyons, Devin K. Schweppe, Jessica Gordon, Robert Spiera, Robert Lafyatis, Paul Anderson, Scott A. Gerber, Michael L. Whitfield
Software Mentions: 2
Published: over 10 years ago

10.3390/pathogens10080922

Transmission Dynamics of Bovine Viral Diarrhea Virus in Hokkaido, Japan by Phylogenetic and Epidemiological Network Approaches
Cited by: 3
Author(s): Shizuka Hirose, Kosuke Notsu, Satoshi Itō, Yoshihiro Sakoda, Norikazu Isoda
Software Mentions: 2
Published: about 5 years ago

10.1186/s12862-019-1446-8

Host specialisation and disparate evolution of Pyrenophora teres f. teres on barley and barley grass
Cited by: 7
Author(s): Celeste C. Linde, Leon M. Smith
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pbio.1002515

Topological Small-World Organization of the Fibroblastic Reticular Cell Network Determines Lymph Node Functionality
Cited by: 93
Author(s): Mario Novković, Lucas Onder, Jovana Cupovic, Jun Abe, David Bomze, Viviana Cremasco, Elke Scandella, Jens V Stein, Gennady Bocharov, Shannon J. Turley, Burkhard Ludewig
Software Mentions: 2
Published: over 10 years ago

10.1098/rstb.2014.0241

Dynamics of immunoglobulin sequence diversity in HIV-1 infected individuals
Cited by: 30
Author(s): Kenneth B. Hoehn, Astrid Gall, Rachael Bashford-Rogers, Sarah Fidler, Steve Kaye, Jonathan Weber, Myra O. McClure, Spartac Trial Investigators, Paul Kellam, Oliver G. Pybus
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0099502

Co-Authorship and Bibliographic Coupling Network Effects on Citations
Cited by: 86
Author(s): Claudio Biscaro, Carlo Giupponi
Software Mentions: 2
Published: over 12 years ago

10.3389/fonc.2021.720400

Construction and Characterization of Long Non-Coding RNA-Associated Networks to Reveal Potential Prognostic Biomarkers in Human Lung Adenocarcinoma
Cited by: 4
Author(s): Wenting Zhou, Chen Bai, C. B. Long, Li Hu, Yanfei Zheng
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-020-68805-6

Minimal fatal shocks in multistable complex networks
Cited by: 18
Author(s): Lukas Halekotte, Ulrike Feudel
Software Mentions: 2
Published: over 6 years ago

10.1186/s12918-018-0655-x

Identification of active signaling pathways by integrating gene expression and protein interaction data
Cited by: 19
Author(s): Humayun Kabir, Ralph Patrick, Joshua W. K. Ho, Michael D. O’Connor
Software Mentions: 2
Published: almost 8 years ago

10.1186/1752-0509-8-62

Identifying aging-related genes in mouse hippocampus using gateway nodes
Cited by: 12
Author(s): Kathryn Dempsey, Hesham Ali
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0040337

Information Processing in Social Insect Networks
Cited by: 96
Author(s): James S. Waters, Jennifer H. Fewell
Software Mentions: 2
Published: over 14 years ago

10.3389/fonc.2021.640731

Post-Transformation IGHV-IGHD-IGHJ Mutations in Chronic Lymphocytic Leukemia B Cells: Implications for Mutational Mechanisms and Impact on Clinical Course
Cited by: 9
Author(s): Davide Bagnara, Catherine Tang, Jennifer R. Brown, Siddha Kasar, Stacey M. Fernandes, Monica Colombo, Stefano Vergani, Andrea Nicola Mazzarello, Fabio Ghiotto, Silvia Bruno, Fortunato Morabito, R. Kanti, Jonathan E. Kolitz, Jacqueline C. Barrientos, Steven L. Allen, Franco Fais, Matthew D. Scharff, Thomas MacCarthy, Nicholas Chiorazzi
Software Mentions: 2
Published: over 5 years ago

10.16910/jemr.11.4.1

Using Eye Movement Data Visualization to Enhance Training of Air Traffic Controllers: A Dynamic Network Approach
Cited by: 5
Author(s): Saptarshi Mandal, Ziho Kang
Software Mentions: 2
Published: about 8 years ago

10.1128/mSystems.00357-19

Progressive Microbial Community Networks with Incremental Organic Loading Rates Underlie Higher Anaerobic Digestion Performance
Cited by: 14
Author(s): Linwei Wu, Xiaoyu Shan, Si Chen, Qiuting Zhang, Qi Qi, Ziyan Qin, Huaqun Yin, Jizhong Zhou, Qiang He, Yunfeng Yang
Software Mentions: 2
Published: over 6 years ago

10.3389/fphys.2018.01377

Causality Analysis and Cell Network Modeling of Spatial Calcium Signaling Patterns in Liver Lobules
Cited by: 7
Author(s): Aalap Verma, Anil Noronha Antony, Babatunde A. Ogunnaike, Jan B. Hoek, Rajanikanth Vadigepalli
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-021-95516-3

Identifying structural connectivity priorities in eastern Paraguay’s fragmented Atlantic Forest
Cited by: 7
Author(s): Noé U. de la Sancha, Sarah A. Boyle, Nancy E. McIntyre
Software Mentions: 2
Published: about 5 years ago

Projects: cran: igraph

Science Score: 100/100

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Papers Mentioning igraph 1,555