cran: igraph | Projects | Ecosyste.ms: Papers

10.3389/fvets.2016.00004

Spatial and Functional Organization of Pig Trade in Different European Production Systems: Implications for Disease Prevention and Control
Cited by: 32
Author(s): Anne A. Relun, Vladimir Grosbois, José Manuel Sánchez-Vizcaíno, Tsviatko Alexandrov, Francesco Feliziani, Agnès Waret-Szkuta, Sophie Molia, Éric Etter, Beatriz Martínez‐López
Software Mentions: 2
Published: over 10 years ago

10.1128/mSystems.00394-21

A Scale-Free, Fully Connected Global Transition Network Underlies Known Microbiome Diversity
Cited by: 4
Author(s): Gongchao Jing, Yufeng Zhang, Lu Liu, Zengbin Wang, Zheng Sun, Rob Knight, Xiaoquan Su, Jian Xu
Software Mentions: 2
Published: about 5 years ago

10.3389/fvets.2019.00454

Implications of Cattle Trade for the Spread and Control of Infectious Diseases in Slovenia
Cited by: 17
Author(s): Tanja Knific, M. Ocepek, Andrej Kirbiš, Hartmut H. K. Lentz
Software Mentions: 2
Published: almost 7 years ago

10.1002/humu.22906

Network-Informed Gene Ranking Tackles Genetic Heterogeneity in Exome-Sequencing Studies of Monogenic Disease
Cited by: 5
Author(s): Nick Dand, Reiner Schulz, Michael E. Weale, Laura Southgate, Rebecca J. Oakey, Michael A. Simpson, Thomas Schlitt
Software Mentions: 2
Published: about 11 years ago

10.1038/s41396-018-0232-8

Genetic correlation network prediction of forest soil microbial functional organization
Cited by: 56
Author(s): Bin Ma, Kankan Zhao, Xiaofei Lv, Weiqin Su, Zhongmin Dai, Jack A. Gilbert, Philip C. Brookes, Karoline Faust, Jianming Xu
Software Mentions: 2
Published: about 8 years ago

10.1038/s41396-021-00957-3

Light exposure mediates circadian rhythms of rhizosphere microbial communities
Cited by: 32
Author(s): Kankan Zhao, Bin Ma, Yan Xu, Erinne Stirling, Jianming Xu
Software Mentions: 2
Published: over 5 years ago

10.3389/fnsys.2021.645709

Network Path Convergence Shapes Low-Level Processing in the Visual Cortex
Cited by: 2
Author(s): Bálint Varga, Bettina Soós, Balázs Jákli, Erika Bálint, Zoltán Somogyvári, László Négyessy
Software Mentions: 2
Published: over 5 years ago

10.3389/fnsys.2021.580569

Adaptive Rewiring in Weighted Networks Shows Specificity, Robustness, and Flexibility
Cited by: 8
Author(s): Ilias Rentzeperis, Cees van Leeuwen
Software Mentions: 2
Published: over 5 years ago

10.1038/s41396-019-0567-9

Long-term nutrient inputs shift soil microbial functional profiles of phosphorus cycling in diverse agroecosystems
Cited by: 222
Author(s): Zhongmin Dai, Guofei Liu, Huaihai Chen, Chengrong Chen, Jingkuan Wang, Shaoying Ai, Dan Wei, Daming Li, Bin Ma, Caixian Tang, Philip C. Brookes, Jianming Xu
Software Mentions: 2
Published: almost 7 years ago

10.3389/fpsyg.2015.00603

Network-based characterization of brain functional connectivity in Zen practitioners
Cited by: 36
Author(s): Phebe Brenne Kemmer, Ying Guo, Yi‐Kai Wang, Giuseppe Pagnoni
Software Mentions: 2
Published: over 11 years ago

10.3389/fpsyg.2015.01111

Second language social networks and communication-related acculturative stress: the role of interconnectedness
Cited by: 58
Author(s): Marina M. Doucerain, Raheleh S. Varnaamkhaasti, Norman Segalowitz, Andrew G. Ryder
Software Mentions: 2
Published: about 11 years ago

10.16910/jemr.11.4.1

Using Eye Movement Data Visualization to Enhance Training of Air Traffic Controllers: A Dynamic Network Approach
Cited by: 5
Author(s): Saptarshi Mandal, Ziho Kang
Software Mentions: 2
Published: about 8 years ago

10.1155/2019/2146391

Genome-Wide Identification and Characterization of the ALOG Domain Genes in Rice
Cited by: 10
Author(s): Na Li, Yang Wang, Jing Lü, Chuan Liu
Software Mentions: 2
Published: over 7 years ago

10.3390/ijerph16071223

Impacts of Road Traffic Network and Socioeconomic Factors on the Diffusion of 2009 Pandemic Influenza A (H1N1) in Mainland China
Cited by: 32
Author(s): Bo Xu, Huaiyu Tian, Clive E. Sabel, Bing Xu
Software Mentions: 2
Published: over 7 years ago

10.18632/oncotarget.10734

Distinct distributions of genomic features of the 5’ and 3’ partners of coding somatic cancer gene fusions: arising mechanisms and functional implications
Cited by: 0
Author(s): Yang Zhao, Won‐Min Song, Fan Zhang, Ming‐Ming Zhou, Weijia Zhang, Martin J. Walsh, Bin Zhang
Software Mentions: 2
Published: over 10 years ago

10.18632/oncotarget.21783

Identification of potential prognostic ceRNA module biomarkers in patients with pancreatic adenocarcinoma
Cited by: 14
Author(s): Lili Zhao, Bing-Rong Liu
Software Mentions: 2
Published: about 9 years ago

10.3390/ijerph17010090

Potential Confounders in the Analysis of Brazilian Adolescent’s Health: A Combination of Machine Learning and Graph Theory
Cited by: 3
Author(s): Amanda Yumi Ambriola Oku, Guilherme Augusto Zimeo Morais, Ana Paula Arantes Bueno, André Fujita, João Ricardo Sato
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijerph17051764

Relationship of Salivary Microbiome with the Worsening of the Periodontal Health Status in Young Adults: A 3-Year Cohort Study
Cited by: 1
Author(s): Monirul Islam, Daisuke Ekuni, Naoki Toyama, Terumasa Kobayashi, Kohei Fujimori, Yuzo Uchida, Daiki Fukuhara, Ayano Taniguchi-Tabata, Koichi Kataoka, Yoshiaki Iwasaki, Manabu Morita
Software Mentions: 2
Published: over 6 years ago

10.3390/ijerph17124182

Statistical and Network-Based Analysis of Italian COVID-19 Data: Communities Detection and Temporal Evolution
Cited by: 12
Author(s): Marianna Milano, Mario Cannataro
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2017.01029

Evidence and Consequence of a Highly Adapted Clonal Haplotype within the Australian Ascochyta rabiei Population
Cited by: 23
Author(s): Yasir Mehmood, Prabhakaran Thanjavur Sambasivam, Sukhjiwan Kaur, J. A. Davidson, Audrey E. Leo, Kristy Hobson, Celeste C. Linde, Kevin Moore, Jeremy C. Brownlie, Rebecca Ford
Software Mentions: 2
Published: over 9 years ago

10.3390/ijerph18083922

Time Granularity Impact on Propagation of Disruptions in a System-of-Systems Simulation of Infrastructure and Business Networks
Cited by: 3
Author(s): Mateusz Iwo Dubaniowski, Hans Rudolf Heinimann
Software Mentions: 2
Published: over 5 years ago

10.3390/ijerph18168388

The Structure of Social Support in Confidant Networks: Implications for Depression
Cited by: 4
Author(s): Liyuan Wang, Lindsay E. Young, Lynn C. Miller
Software Mentions: 2
Published: about 5 years ago

10.1007/s00442-021-04967-y

The role of habitat configuration in shaping animal population processes: a framework to generate quantitative predictions
Cited by: 8
Author(s): Peng He, Pierre‐Olivier Montiglio, Marius Somveille, Maurício Cantor, Dan Farine
Software Mentions: 2
Published: over 5 years ago

10.1038/s41388-018-0651-z

The coordinated action of VCP/p97 and GCN2 regulates cancer cell metabolism and proteostasis during nutrient limitation
Cited by: 32
Author(s): Katarzyna Parzych, Paula Saavedra‐García, Gabriel N. Valbuena, Hibah A Al-Sadah, Mark E. Robinson, Lucy Penfold, Desislava M Kuzeva, Angie Ruiz-Tellez, Sandra Loaiza, Viktoria Holzmann, Valentina S Caputo, David C. Johnson, Martin Kaiser, Anastasios Karadimitris, Eric Lam, Éric Chevet, Niklas Feldhahn, Hector C. Keun, Holger W. Auner
Software Mentions: 2
Published: almost 8 years ago

10.3389/fpls.2014.00598

Integrated network analysis and effective tools in plant systems biology
Cited by: 40
Author(s): Atsushi Fukushima, Shigehiko Kanaya, Kozo Nishida
Software Mentions: 2
Published: almost 12 years ago

10.3389/fmicb.2016.00570

Data-based Reconstruction of Gene Regulatory Networks of Fungal Pathogens
Cited by: 5
Author(s): Reinhard Guthke, Silvia Gerber, Theresia Conrad, Sebastian Vlaic, Saliha Durmuş, Tunahan Çakır, Fatih Erdoğan Sevilgen, Ekaterina Shelest, Jörg Linde
Software Mentions: 2
Published: over 10 years ago

10.3389/fpls.2018.01467

Paving the Way From the Lab to the Field: Using Synthetic Microbial Consortia to Produce High-Quality Crops
Cited by: 55
Author(s): Zhaochen Kong, Miranda M. Hart, Hongguang Liu
Software Mentions: 2
Published: about 8 years ago

10.3389/fphys.2018.01377

Causality Analysis and Cell Network Modeling of Spatial Calcium Signaling Patterns in Liver Lobules
Cited by: 7
Author(s): Aalap Verma, Anil Noronha Antony, Babatunde A. Ogunnaike, Jan B. Hoek, Rajanikanth Vadigepalli
Software Mentions: 2
Published: about 8 years ago

10.3389/fonc.2021.640731

Post-Transformation IGHV-IGHD-IGHJ Mutations in Chronic Lymphocytic Leukemia B Cells: Implications for Mutational Mechanisms and Impact on Clinical Course
Cited by: 9
Author(s): Davide Bagnara, Catherine Tang, Jennifer R. Brown, Siddha Kasar, Stacey M. Fernandes, Monica Colombo, Stefano Vergani, Andrea Nicola Mazzarello, Fabio Ghiotto, Silvia Bruno, Fortunato Morabito, R. Kanti, Jonathan E. Kolitz, Jacqueline C. Barrientos, Steven L. Allen, Franco Fais, Matthew D. Scharff, Thomas MacCarthy, Nicholas Chiorazzi
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.720400

Construction and Characterization of Long Non-Coding RNA-Associated Networks to Reveal Potential Prognostic Biomarkers in Human Lung Adenocarcinoma
Cited by: 4
Author(s): Wenting Zhou, Chen Bai, C. B. Long, Li Hu, Yanfei Zheng
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.02863

Buffered Qualitative Stability explains the robustness and evolvability of transcriptional networks
Cited by: 34
Author(s): Luca Albergante, J. Julian Blow, T. J. Newman
Software Mentions: 2
Published: about 12 years ago

10.3389/fnins.2015.00472

Identification of Voxels Confounded by Venous Signals Using Resting-State fMRI Functional Connectivity Graph Community Identification
Cited by: 9
Author(s): Klaudius Kalcher, Roland N. Boubela, Wolfgang Huf, Christian Našel, Ewald Moser
Software Mentions: 2
Published: almost 11 years ago

10.3390/ijms22031097

In Silico Inference of Synthetic Cytotoxic Interactions from Paclitaxel Responses
Cited by: 0
Author(s): Jeong Hoon Lee, Kye Hwa Lee, Ju Han Kim
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.556002

Effects of Plant and Soil Characteristics on Phyllosphere and Rhizosphere Fungal Communities During Plant Development in a Copper Tailings Dam
Cited by: 15
Author(s): Tong Jia, Yushan Yao, Tingyan Guo, Ruihong Wang, Bo Chai
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2018.02237

Diversity of Yeasts and Molds by Culture-Dependent and Culture-Independent Methods for Mycobiome Surveillance of Traditionally Prepared Dried Starters for the Production of Indian Alcoholic Beverages
Cited by: 34
Author(s): Shankar Prasad Sha, Mangesh V. Suryavanshi, Kunal Jani, Avinash Sharma, Yogesh S. Shouche, Jyoti Prakash Tamang
Software Mentions: 2
Published: about 8 years ago

10.3390/ijms22073497

ceRNA Network Regulation of TGF-β, WNT, FOXO, Hedgehog Pathways in the Pharynx of Ciona robusta
Cited by: 4
Author(s): Aiti Vizzini, Angela Bonura, Laura La Paglia, Antonino Fiannaca, Massimo La Rosa, Alfonso Urso, Vincenzo Arizza
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.632695

Evaluation of the Inflammatory Cytokines and IL-10 Network in Individuals Co-infected With Human T-Cell Lymphotropic Virus and Hepatitis C Virus (HTLV/HCV)
Cited by: 1
Author(s): Felicidade Mota Pereira, Pablo Ivan Pereira Ramos, Monique Lírio, Ajax Mercês Atta, Ilka Regina Souza de Oliveira, Fabio Carneiro Vosqui Nascimento, Marcelo Costa Silva, Bernardo Galvão–Castro, Maria Fernanda Rios Grassi
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.01361

Scoring Species for Synthetic Community Design: Network Analyses of Functional Core Microbiomes
Cited by: 22
Author(s): Hirokazu Toju, Masato S. Abe, Chiharu Ishii, Haruo Yoshiki, Hiroaki Fujita, Shinji Fukuda
Software Mentions: 2
Published: over 6 years ago

10.1111/jvim.16058

Peri‐ictal magnetic resonance imaging characteristics in dogs with suspected idiopathic epilepsy
Cited by: 11
Author(s): Aran Nagendran, J. Fraser McConnell, Luisa De Risio, Roberto José‐López, R. Gutierrez Quintana, Kelsey Robinson, Simon Platt, Daniel Sánchez Masián, Thomas W. Maddox, Rita Gonçalves
Software Mentions: 2
Published: over 5 years ago

10.2196/12914

Identifying Influence Agents That Promote Physical Activity Through the Simulation of Social Network Interventions: Agent-Based Modeling Study
Cited by: 24
Author(s): Thabo J. van Woudenberg, Bojan Simoski, Eric Fernandes de Mello Araújo, Kirsten E. Bevelander, William J. Burk, Crystal R. Smit, Laura Buijs, Michel Klein, Moniek Buijzen
Software Mentions: 2
Published: about 7 years ago

10.2196/18457

Two Decades of Research Using Taiwan’s National Health Insurance Claims Data: Bibliometric and Text Mining Analysis on PubMed
Cited by: 23
Author(s): Sheng Feng Sung, Cheng‐Yang Hsieh, Yu Hu
Software Mentions: 2
Published: over 6 years ago

10.2196/jmir.7643

Identifying Opinion Leaders to Promote Organ Donation on Social Media: Network Study
Cited by: 34
Author(s): Jingyuan Shi, Charles T. Salmon
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2012.00278

Phylodynamic analysis of a viral infection network
Cited by: 7
Author(s): Teiichiro Shiino
Software Mentions: 2
Published: almost 15 years ago

10.3389/fmicb.2019.03123

The cyl Genes Reveal the Biosynthetic and Evolutionary Origins of the Group B Streptococcus Hemolytic Lipid, Granadaene
Cited by: 13
Author(s): Blair Armistead, Christopher Whidbey, Lakshminarayan M. Iyer, Pilar Herrero-Foncubierta, Phoenicia Quach, Alí Haïdour, L. Aravind, Juan M. Cuerva, Heather B. Jaspan, Lakshmi Rajagopal
Software Mentions: 2
Published: almost 7 years ago

10.2196/21680

Predictors of Health Information Seeking Behavior: A Systematic Review and Network Analysis (Preprint)
Cited by: 16
Author(s): Ardalan Mirzaei, Parisa Aslani, Edward Luca, Carl R. Schneider
Software Mentions: 2
Published: over 6 years ago

10.1186/s12967-019-1947-7

Cytokine expression in Treponema pallidum infection
Cited by: 6
Author(s): Noah Kojima, Janet Siebert, Holden T. Maecker, Yael Rosenberg-Hasson, Segundo R. León, Silver K. Vargas, Kelika A. Konda, Carlos F. Caceres, Jeffrey D. Klausner
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2017.00545

Genetic Characterization of the Exceptionally High Heat Resistance of the Non-toxic Surrogate Clostridium sporogenes PA 3679
Cited by: 16
Author(s): Robert R. Butler, Kristin M. Schill, Yun Wang, Jean‐François Pombert
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2016.01285

Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System
Cited by: 84
Author(s): Adrian Ho, Roey Angel, Annelies J. Veraart, Anne Daebeler, Zhongjun Jia, Sang Yoon Kim, Frederiek‐Maarten Kerckhof, Nico Boon, Paul L. E. Bodelier
Software Mentions: 2
Published: about 10 years ago

10.1038/s41598-021-95516-3

Identifying structural connectivity priorities in eastern Paraguay’s fragmented Atlantic Forest
Cited by: 7
Author(s): Noé U. de la Sancha, Sarah A. Boyle, Nancy E. McIntyre
Software Mentions: 2
Published: about 5 years ago

10.1155/2014/487069

An Improved<i>Physarum polycephalum</i>Algorithm for the Shortest Path Problem
Cited by: 10
Author(s): Xiaoge Zhang, Qing Wang, Andrew Adamatzky, Felix T.S. Chan, Sankaran Mahadevan, Yong Deng
Software Mentions: 2
Published: almost 13 years ago

10.1038/s41598-020-70239-z

Pathway-specific model estimation for improved pathway annotation by network crosstalk
Cited by: 11
Author(s): Miguel Castresana-Aguirre, Erik L. L. Sonnhammer
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-021-87555-7

Proteomic profiling of the rat hippocampus from the kindling and pilocarpine models of epilepsy: potential targets in calcium regulatory network
Cited by: 14
Author(s): Leila Sadeghi, Albert A. Rizvanov, Bahareh Dabirmanesh, И. И. Салафутдинов, Mohammad Sayyah, Amir Shojaei, Javad Zahiri, Javad Mirnajafi‐Zadeh, Babak Khorsand, Khosro Khajeh, Yaghoub Fathollahi
Software Mentions: 2
Published: over 5 years ago

10.1186/s40064-016-2022-y

The topology of the directed clique complex as a network invariant
Cited by: 24
Author(s): Paolo Masulli, Alessandro E. P. Villa
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-021-87318-4

Fragmented sleep relates to hallucinations across perceptual modalities in the general population
Cited by: 5
Author(s): Sanne Brederoo, J N de Boer, Jacqueline de Vries, Mascha M J Linszen, Iris Sommer
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-74964-3

An equity-oriented rethink of global rankings with complex networks mapping development
Cited by: 11
Author(s): Loredana Bellantuono, A. Monaco, Sabina Tangaro, Nicola Amoroso, Vincenzo Aquaro, R. Bellotti
Software Mentions: 2
Published: about 6 years ago

Projects: cran: igraph

Science Score: 100/100

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Papers Mentioning igraph 1,555