cran: igraph | Projects | Ecosyste.ms: Papers

10.1371/journal.pcbi.1006888

Predicting synthetic lethal interactions using conserved patterns in protein interaction networks
Cited by: 29
Author(s): Graeme Benstead-Hume, Xiangrong Chen, Suzanna R. Hopkins, Karen A. Lane, Jessica A. Downs, Frances M. G. Pearl
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pcbi.1003549

Within-Host Bacterial Diversity Hinders Accurate Reconstruction of Transmission Networks from Genomic Distance Data
Cited by: 146
Author(s): Colin J. Worby, Marc Lipsitch, William P. Hanage
Software Mentions: 2
Published: over 12 years ago

10.3390/ijms22073497

ceRNA Network Regulation of TGF-β, WNT, FOXO, Hedgehog Pathways in the Pharynx of Ciona robusta
Cited by: 4
Author(s): Aiti Vizzini, Angela Bonura, Laura La Paglia, Antonino Fiannaca, Massimo La Rosa, Alfonso Urso, Vincenzo Arizza
Software Mentions: 2
Published: over 5 years ago

10.3389/fnsys.2021.580569

Adaptive Rewiring in Weighted Networks Shows Specificity, Robustness, and Flexibility
Cited by: 8
Author(s): Ilias Rentzeperis, Cees van Leeuwen
Software Mentions: 2
Published: over 5 years ago

10.3389/fnsys.2021.645709

Network Path Convergence Shapes Low-Level Processing in the Visual Cortex
Cited by: 2
Author(s): Bálint Varga, Bettina Soós, Balázs Jákli, Erika Bálint, Zoltán Somogyvári, László Négyessy
Software Mentions: 2
Published: over 5 years ago

10.3389/fvets.2019.00454

Implications of Cattle Trade for the Spread and Control of Infectious Diseases in Slovenia
Cited by: 17
Author(s): Tanja Knific, M. Ocepek, Andrej Kirbiš, Hartmut H. K. Lentz
Software Mentions: 2
Published: almost 7 years ago

10.3389/fvets.2016.00004

Spatial and Functional Organization of Pig Trade in Different European Production Systems: Implications for Disease Prevention and Control
Cited by: 32
Author(s): Anne A. Relun, Vladimir Grosbois, José Manuel Sánchez-Vizcaíno, Tsviatko Alexandrov, Francesco Feliziani, Agnès Waret-Szkuta, Sophie Molia, Éric Etter, Beatriz Martínez‐López
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pcbi.1004372

Do Brain Networks Evolve by Maximizing Their Information Flow Capacity?
Cited by: 33
Author(s): Chris G. Antonopoulos, Suraj Srivastava, Sandro Ely de Souza Pinto, Murilo S. Baptista
Software Mentions: 2
Published: about 11 years ago

10.3389/fvets.2016.00048

Impact of Network Activity on the Spread of Infectious Diseases through the German Pig Trade Network
Cited by: 20
Author(s): Karin Lebl, Hartmut H. K. Lentz, Beate Pinior, Thomas Selhorst
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pbio.1001869

Network Analyses Reveal Pervasive Functional Regulation Between Proteases in the Human Protease Web
Cited by: 135
Author(s): Nikolaus Fortelny, Jennifer H. Cox, Reinhild Kappelhoff, Amanda E. Starr, Philipp F. Lange, Paul Pavlidis, Christopher M. Overall
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pbio.1002515

Topological Small-World Organization of the Fibroblastic Reticular Cell Network Determines Lymph Node Functionality
Cited by: 93
Author(s): Mario Novković, Lucas Onder, Jovana Cupovic, Jun Abe, David Bomze, Viviana Cremasco, Elke Scandella, Jens V Stein, Gennady Bocharov, Shannon J. Turley, Burkhard Ludewig
Software Mentions: 2
Published: over 10 years ago

10.1186/s12859-021-04216-2

Exploring the functional composition of the human microbiome using a hand-curated microbial trait database
Cited by: 8
Author(s): Jake L. Weissman, Sonia Dogra, Keyan Javadi, Samantha Bolten, Rachel Flint, Cyrus Davati, Jess Beattie, Keshav Dixit, Tejasvi Peesay, Shehar Awan, Peter Thielen, Florian P. Breitwieser, Philip L. Johnson, David Karig, William F. Fagan, Sharon Bewick
Software Mentions: 2
Published: over 5 years ago

10.3389/fvets.2019.00071

Equine Rhinitis A Virus Infection at a Standardbred Training Facility: Incidence, Clinical Signs, and Risk Factors for Clinical Disease
Cited by: 3
Author(s): T. M. Rossi, Alison Moore, Terri L. O’Sullivan, Amy L. Greer
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pbio.2002612

A multiscale cerebral neurochemical connectome of the rat brain
Cited by: 33
Author(s): Hamid Noori, Judith Schöttler, Mária Ercsey-Ravasz, Alejandro Cosa‐Linan, Melinda Varga, Zoltán Toroczkai, Rainer Spanagel
Software Mentions: 2
Published: over 9 years ago

10.1534/g3.118.200260

ACyclin ECentered Genetic Network Contributes to Alcohol-Induced Variation in Drosophila Development
Cited by: 14
Author(s): Tatiana V. Morozova, Yasmeen N. Hussain, Lenovia J. McCoy, Eugenea V Zhirnov, Morgan R. Davis, Victoria A. Pray, Rachel A Lyman, Laura Duncan, Anna McMillen, Aiden Jones, Trudy F. C. Mackay, Robert R. H. Anholt
Software Mentions: 2
Published: about 8 years ago

10.1186/s40814-021-00835-x

Feasibility study of peer-led and school-based social network Intervention (STASH) to promote adolescent sexual health
Cited by: 6
Author(s): Kirstin R Mitchell, Carrie Purcell, Sharon Anne Simpson, Chiara Broccatelli, Julia Bailey, Sarah Barry, Lawrie Elliott, Ross Forsyth, Rachael Hunter, Mark McCann, Lisa McDaid, Kirsty Wetherall, Linda Moore
Software Mentions: 2
Published: over 5 years ago

10.1093/g3journal/jkab131

Effects of kinship correction on inflation of genetic interaction statistics in commonly used mouse populations
Cited by: 4
Author(s): Anna L. Tyler, Bahá El Kassaby, Georgi Kolishovski, J. J. Emerson, Ann Wells, James Mahoney, Gregory W. Carter
Software Mentions: 2
Published: over 5 years ago

10.1094/PHYTO-03-18-0072-R

Modeling Epidemics in Seed Systems and Landscapes To Guide Management Strategies: The Case of Sweet Potato in Northern Uganda
Cited by: 25
Author(s): Kelsey F. Andersen, Christopher E. Buddenhagen, Paul Rachkara, R. W. Gibson, Stephen W. Kalule, David P. Phillips, Karen A. Garrett
Software Mentions: 2
Published: about 7 years ago

10.1098/rstb.2014.0241

Dynamics of immunoglobulin sequence diversity in HIV-1 infected individuals
Cited by: 30
Author(s): Kenneth B. Hoehn, Astrid Gall, Rachael Bashford-Rogers, Sarah Fidler, Steve Kaye, Jonathan Weber, Myra O. McClure, Spartac Trial Investigators, Paul Kellam, Oliver G. Pybus
Software Mentions: 2
Published: about 11 years ago

10.3390/genes10100776

Patterns and Constraints in the Evolution of Sperm Individualization Genes in Insects, with an Emphasis on Beetles
Cited by: 1
Author(s): Helena I. Vizán‐Rico, Christoph Mayer, Malte Petersen, Duane D. McKenna, Xin Zhou, Jesús Gómez‐Zurita
Software Mentions: 2
Published: about 7 years ago

10.3390/genes11030247

Network Properties of Cancer Prognostic Gene Signatures in the Human Protein Interactome
Cited by: 0
Author(s): Jifeng Zhang, Shoubao Yan, Cheng Jiang, Zhicheng Ji, Chenrun Wang, Weidong Tian
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.9632

The brain-derived neurotrophic factor Val66Met polymorphism increases segregation of structural correlation networks in healthy adult brains
Cited by: 4
Author(s): Issei Ueda, Kazuhiro Takemoto, Keita Watanabe, Katsuhisa Sugimoto, Atsuko Ikenouchi, Shingo Kakeda, Asuka Katsuki, Reiji Yoshimura, Yukunori Korogi
Software Mentions: 2
Published: about 6 years ago

10.3390/genes12050740

Evolution of Reproductive Life History in Mammals and the Associated Change of Functional Constraints
Cited by: 6
Author(s): Jiaqi Wu, Takahiro Yonezawa, Hirohisa Kishino
Software Mentions: 2
Published: over 5 years ago

10.1186/1297-9686-44-17

Genetic diversity and networks of exchange: a combined approach to assess intra-breed diversity
Cited by: 12
Author(s): Jean-François Dumasy, Christel Daniaux, Isabelle Donnay, Philippe Baret
Software Mentions: 2
Published: over 14 years ago

10.1186/gb-2013-14-8-r85

Sustained-input switches for transcription factors and microRNAs are central building blocks of eukaryotic gene circuits
Cited by: 15
Author(s): Molly Megraw, Sayan Mukherjee, Uwe Ohler
Software Mentions: 2
Published: almost 14 years ago

10.1186/s13059-015-0772-4

New genes drive the evolution of gene interaction networks in the human and mouse genomes
Cited by: 85
Author(s): Wenyu Zhang, Patrick Landback, Andrea R. Gschwend, Bairong Shen, Manyuan Long
Software Mentions: 2
Published: about 11 years ago

10.1186/s13059-016-1003-3

Integrating epigenomic data and 3D genomic structure with a new measure of chromatin assortativity
Cited by: 44
Author(s): Véra Pancaldi, Enrique Carrillo de Santa Pau, Biola M. Javierre, David Juan, Peter Fraser, Mikhail Spivakov, Alfonso Valencia, Daniel Rico
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2105-8-88

Regulation of metabolic networks by small molecule metabolites
Cited by: 28
Author(s): Alex Gutteridge, Minoru Kanehisa, Susumu Goto
Software Mentions: 2
Published: over 19 years ago

10.7717/peerj.3321

Ranking of critical species to preserve the functionality of mutualistic networks using the k-core decomposition
Cited by: 14
Author(s): Javier García-Algarra, M. Pastor, José María Iriondo, Javier Galeano
Software Mentions: 2
Published: over 9 years ago

10.7717/peerj.8749

Potential of the economic valuation of soil-based ecosystem services to inform sustainable soil management and policy
Cited by: 20
Author(s): Bartosz Bartkowski, Stephan Bartke, Katharina Helming, Carsten Paul, Anja-Kristina Techen, Bernd Hansjürgens
Software Mentions: 2
Published: over 6 years ago

10.3390/pathogens9121077

Analysis of Risk Factors for African Swine Fever in Lombardy to Identify Pig Holdings and Areas Most at Risk of Introduction in Order to Plan Preventive Measures
Cited by: 2
Author(s): Silvia Bellini, Alessandra Scaburri, Marco Tironi, Stefania Calò
Software Mentions: 2
Published: almost 6 years ago

10.18632/aging.202995

Gene expression signatures differentiating major depressive disorder from subsyndromal symptomatic depression
Cited by: 2
Author(s): Guoqin Hu, Shunying Yu, Chen Yuan, Hong Wu, Zuowei Wang, Ran Zhang, Dongxiang Wang, Zezhi Li, Zhenghui Yi, Yiru Fang
Software Mentions: 2
Published: over 5 years ago

10.3390/pathogens10080922

Transmission Dynamics of Bovine Viral Diarrhea Virus in Hokkaido, Japan by Phylogenetic and Epidemiological Network Approaches
Cited by: 3
Author(s): Shizuka Hirose, Kosuke Notsu, Satoshi Itō, Yoshihiro Sakoda, Norikazu Isoda
Software Mentions: 2
Published: over 5 years ago

10.1186/s13073-014-0052-z

Molecularly and clinically related drugs and diseases are enriched in phenotypically similar drug-disease pairs
Cited by: 15
Author(s): Ingo Vogt, Jeanette Prinz, Mónica Campillos
Software Mentions: 2
Published: about 12 years ago

10.1186/s40695-020-00060-1

Racial differences in lifestyle, demographic, and health factors associated with quality of life (QoL) in midlife women
Cited by: 4
Author(s): Brandi Patrice Smith, Esmeralda Cardoso-Mendoza, Jodi A. Flaws, Zeynep Madak-Erdoğan
Software Mentions: 2
Published: almost 6 years ago

10.12688/wellcomeopenres.15268.2

Study design and protocol for investigating social network patterns in rural and urban schools and households in a coastal setting in Kenya using wearable proximity sensors
Cited by: 5
Author(s): Moses Chapa Kiti, Alessia Melegaro, Ciro Cattuto, D. James Nokes
Software Mentions: 2
Published: about 7 years ago

10.1186/s13073-017-0507-0

Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients
Cited by: 23
Author(s): Danesh Moradigaravand, Theodore Gouliouris, Beth Blane, Plamena Naydenova, Catherine Ludden, Charles Crawley, Nicholas M. Brown, M. Estée Török, Julian Parkhill, Sharon J. Peacock
Software Mentions: 2
Published: almost 9 years ago

10.3390/v12101087

Network Controllability-Based Prioritization of Candidates for SARS-CoV-2 Drug Repositioning
Cited by: 4
Author(s): Emily E. Ackerman, Jason E. Shoemaker
Software Mentions: 2
Published: about 6 years ago

10.3390/v4123625

A Systems Biology Starter Kit for Arenaviruses
Cited by: 0
Author(s): Magali E. Droniou-Bonzom, Paula M. Cannon
Software Mentions: 2
Published: almost 14 years ago

10.2196/12914

Identifying Influence Agents That Promote Physical Activity Through the Simulation of Social Network Interventions: Agent-Based Modeling Study
Cited by: 24
Author(s): Thabo J. van Woudenberg, Bojan Simoski, Eric Fernandes de Mello Araújo, Kirsten E. Bevelander, William J. Burk, Crystal R. Smit, Laura Buijs, Michel Klein, Moniek Buijzen
Software Mentions: 2
Published: about 7 years ago

10.2196/18457

Two Decades of Research Using Taiwan’s National Health Insurance Claims Data: Bibliometric and Text Mining Analysis on PubMed
Cited by: 23
Author(s): Sheng Feng Sung, Cheng‐Yang Hsieh, Yu Hu
Software Mentions: 2
Published: over 6 years ago

10.1186/s13567-014-0110-y

Not all cows are epidemiologically equal: quantifying the risks of bovine viral diarrhoea virus (BVDV) transmission through cattle movements
Cited by: 31
Author(s): M. Carolyn Gates, R.W. Humphry, George J. Gunn, Mark Woolhouse
Software Mentions: 2
Published: about 12 years ago

10.1093/gigascience/gix054

iCAVE: an open source tool for visualizing biomolecular networks in 3D, stereoscopic 3D and immersive 3D
Cited by: 20
Author(s): Vaja Liluashvili, Selim Kalayci, Eugene Fluder, Manda Wilson, Aaron Gabow, Zeynep H. Gümüş
Software Mentions: 2
Published: over 9 years ago

10.1155/2021/8708023

Tear Film Proteome of Healthy Domestic Cats
Cited by: 2
Author(s): Jéssica Fontes Veloso, Paula Elisa Brandão Guedes, Luciana Carvalho Lacerda, Juliano Oliveira Santana, Irma Yuliana Mora-Ocampo, Carlos Priminho Pirovani, Arianne Pontes Oriá, Alexandre Dias Munhoz, Renata Santiago Alberto Carlos
Software Mentions: 2
Published: over 5 years ago

10.1007/s11252-017-0724-8

The application of graph theory and percolation analysis for assessing change in the spatial configuration of pond networks
Cited by: 10
Author(s): Ian Thornhill, Lesley Batty, Matthew J. Hewitt, Nikolai Friberg, Mark E. Ledger
Software Mentions: 2
Published: almost 9 years ago

10.15252/msb.20156484

An inter‐species protein–protein interaction network across vast evolutionary distance
Cited by: 42
Author(s): Quan Zhong, Samuel Pevzner, Tong Hao, Yang Wang, Roberto Mosca, Jörg Menche, Mikko Taipale, Murat Taşan, Changyu Fan, Xinping Yang, Patrick J. Haley, Ryan R. Murray, Flora Mer, Fana Gebreab, Stanley Tam, Andrew MacWilliams, Amélie Dricot, Patrick Reichert, S. Balaji, Lila Ghamsari, Michael A. Calderwood, Thomas Rolland, Benoît Charloteaux, Susan Lindquist, Albert‐László-L. Barabási, David E. Hill, Patrick Aloy, Michael E. Cusick, Yu Xia, Frederick P. Roth, Marc Vidal
Software Mentions: 2
Published: over 10 years ago

10.15252/msb.20188594

High‐resolution mapping of cancer cell networks using co‐functional interactions
Cited by: 61
Author(s): Evan A. Boyle, Jonathan K. Pritchard, William J. Greenleaf
Software Mentions: 2
Published: almost 8 years ago

10.1093/gigascience/giaa019

Comparative proteomics analysis of Tibetan hull-less barley under osmotic stress via data-independent acquisition mass spectrometry
Cited by: 17
Author(s): Yulin Wang, Zha Sang, Shaohang Xu, Qijun Xu, Xingquan Zeng, Dunzhu Jabu, Hongjun Yuan
Software Mentions: 2
Published: over 6 years ago

10.1186/s41256-018-0067-x

Scientific authorship and collaboration network analysis on malaria research in Benin: papers indexed in the web of science (1996–2016)
Cited by: 15
Author(s): Roseric Azondékon, Zachary J. Harper, Fiacre Agossa, Charles M. Welzig, Susan McRoy
Software Mentions: 2
Published: over 8 years ago

10.1002/mgg3.659

Prioritization and comprehensive analysis of genes related to major depressive disorder
Cited by: 12
Author(s): Yi Liu, Ping Fan, Shiyuan Zhang, Yidan Wang, Dan Liŭ
Software Mentions: 2
Published: over 7 years ago

10.3390/molecules26061664

PepFun: Open Source Protocols for Peptide-Related Computational Analysis
Cited by: 11
Author(s): Rodrigo Ochoa, Pilar Cossio
Software Mentions: 2
Published: over 5 years ago

10.1111/hex.13130

A skills network approach to physicians’ competence in shared decision making
Cited by: 4
Author(s): Levente Kriston, Pola Hahlweg, Martin Härter, Isabelle Scholl
Software Mentions: 2
Published: about 6 years ago

10.3390/molecules24061081

CuDDI: A CUDA-Based Application for Extracting Drug-Drug Interaction Related Substance Terms from PubMed Literature
Cited by: 2
Author(s): Ling Yin, Aditya Chandra Vothgod Ramachandra, Minh Pham, Yi-Cheng Tu, Feng Cheng
Software Mentions: 2
Published: over 7 years ago

10.1186/s12961-021-00774-2

Collaboration on evidence synthesis in Africa: a network study of growing research capacity
Cited by: 2
Author(s): Jiluan Pan, Yongqi Zhong, Sarah Young, Nynke M. D. Niezink
Software Mentions: 2
Published: about 5 years ago

10.1016/j.heliyon.2020.e05069

Animating inter-organisational resilience communication: A participatory social network analysis of water governance in the UK
Cited by: 6
Author(s): Sarah Ward, Fanlin Meng, Sarah Bunney, Kegong Diao, David Butler
Software Mentions: 2
Published: about 6 years ago

10.2196/jmir.7643

Identifying Opinion Leaders to Promote Organ Donation on Social Media: Network Study
Cited by: 34
Author(s): Jingyuan Shi, Charles T. Salmon
Software Mentions: 2
Published: almost 9 years ago

10.1016/j.molcel.2016.07.008

Molecular Principles of Gene Fusion Mediated Rewiring of Protein Interaction Networks in Cancer
Cited by: 57
Author(s): Natasha S. Latysheva, Matt Oates, Louis Maddox, Tilman Flock, Julian Gough, Marija Buljan, Robert J. Weatheritt, M. Madan Babu
Software Mentions: 2
Published: about 10 years ago

10.1093/molbev/msv058

AnArabidopsisTranscriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors
Cited by: 129
Author(s): Jinpu Jin, Kongwang He, Xing Tang, Zhe Li, Le Lv, Yi Zhao, Jianxun Luo, Ge Gao
Software Mentions: 2
Published: over 11 years ago

10.1186/s12967-019-1947-7

Cytokine expression in Treponema pallidum infection
Cited by: 6
Author(s): Noah Kojima, Janet Siebert, Holden T. Maecker, Yael Rosenberg-Hasson, Segundo R. León, Silver K. Vargas, Kelika A. Konda, Carlos F. Caceres, Jeffrey D. Klausner
Software Mentions: 2
Published: over 7 years ago

10.1186/s13012-017-0611-y

Rapid sociometric mapping of community health workers to identify opinion leaders using an SMS platform: a short report
Cited by: 4
Author(s): Thomas Odeny, Maya Petersen, Charles T. Muga, Jayne Lewis-Kulzer, Elizabeth A. Bukusi, Elvin Geng
Software Mentions: 2
Published: over 9 years ago

10.1186/s13012-021-01150-y

Influence of physician networks on prescribing a new ingredient combination in heart failure: a longitudinal claim data-based study
Cited by: 2
Author(s): Christine Arnold, Jan Koetsenruijter, Johanna Forstner, Frank Peters-Klimm, Michel Wensing
Software Mentions: 2
Published: about 5 years ago

10.1186/s40249-020-00668-5

Pretreatment HIV drug resistance in adults initiating antiretroviral therapy in China, 2017
Cited by: 19
Author(s): Ran Kang, Shanshan Liang, Yanhui Ma, Shu Liang, Lin Xiao, Xinhui Zhang, Hongzhou Lu, Xun Xu, Suxin Luo, Xiaoguang Sun, Lin Chen, Jianmei He, Guohui Wu, Lingjie Liao, Hui Xing, Yiming Shao, Yuhua Ruan
Software Mentions: 2
Published: over 6 years ago

10.3390/insects11020081

Allometry and Fighting Behaviour of a Dimorphic Stag Beetle Cyclommatus mniszechi (Coleoptera: Lucanidae)
Cited by: 9
Author(s): Zhen Yi Chen, Yu-Wei Hsu, Chung Ping Lin
Software Mentions: 2
Published: over 6 years ago

10.1093/molbev/msz152

Coevolution of Sites under Immune Selection Shapes Epstein–Barr Virus Population Structure
Cited by: 19
Author(s): Fanny Wegner, Florent Lassalle, Daniel P. Depledge, François Balloux, Judith Breuer
Software Mentions: 2
Published: over 7 years ago

10.1155/2011/238743

Contact Heterogeneity and Phylodynamics: How Contact Networks Shape Parasite Evolutionary Trees
Cited by: 17
Author(s): Eamon B. O’Dea, Claus O. Wilke
Software Mentions: 2
Published: almost 16 years ago

10.3390/microorganisms7120586

Root-Associated Fungal Communities in Two Populations of the Fully Mycoheterotrophic Plant Arachnitis uniflora Phil. (Corsiaceae) in Southern Chile
Cited by: 12
Author(s): Héctor Herrera, Javiera Soto, Luz E. de Bashan, Inmaculada Sampedro, César Arriagada
Software Mentions: 2
Published: almost 7 years ago

10.3390/microorganisms6040101

A Metabolomic-Based Evaluation of the Role of Commensal Microbiota throughout the Gastrointestinal Tract in Mice
Cited by: 20
Author(s): Yurie Yamamoto, Yumiko Nakanishi, S. Murakami, Wanping Aw, Tomoya Tsukimi, Ryoko Nozu, Masaki Ueno, Kyoji Hioki, Kenji Nakahigashi, Akiyoshi Hirayama, Masahiro Sugimoto, Tomoyoshi Soga, Mamoru Ito, Masaru Tomita, Shinji Fukuda
Software Mentions: 2
Published: about 8 years ago

10.1111/jcmm.14792

Integrative transcriptomic and proteomic analysis reveals CD9/ITGA4/PI3K‐Akt axis mediates trabecular meshwork cell apoptosis in human glaucoma
Cited by: 14
Author(s): Junwei Yan, Xiaofeng Yang, Xuefei Jiao, Xian Yang, Mingzhou Guo, Yunqing Chen, Lu Zhan, Wenshi Chen
Software Mentions: 2
Published: almost 7 years ago

10.2196/21680

Predictors of Health Information Seeking Behavior: A Systematic Review and Network Analysis (Preprint)
Cited by: 16
Author(s): Ardalan Mirzaei, Parisa Aslani, Edward Luca, Carl R. Schneider
Software Mentions: 2
Published: over 6 years ago

10.1155/2009/182689

Network Properties for Ranking Predicted miRNA Targets in Breast Cancer
Cited by: 4
Author(s): Jörg Linde, Björn Olsson, Zelmina Lubovac
Software Mentions: 2
Published: over 17 years ago

10.1186/2042-5783-2-8

Analysis of evolutionary patterns of genes in Campylobacter jejuni and C. coli
Cited by: 8
Author(s): Lars Snipen, Trudy M. Wassenaar, Eric Altermann, Jonathan W. Olson, Sophia Kathariou, Karin Lagesen, Mónica Takamiya, Susanne Knøchel, David W. Ussery, Richard J. Meinersmann
Software Mentions: 2
Published: about 14 years ago

10.1099/mgen.0.000203

Extended-spectrum β-lactamase-encoding genes are spreading on a wide range of Escherichia coli plasmids existing prior to the use of third-generation cephalosporins
Cited by: 25
Author(s): Catherine Branger, Alice Ledda, Typhaine Billard-Pomarès, Benoît Doublet, Stéphanie Fouteau, Valérie Barbe, David Roche, Stéphane Cruveiller, Claudine Médigue, Miguel Sautié Castellanos, Dominique Decré, Laurence Drieux-Rouze, Olivier Clermont, Jérémy Glodt, Olivier Tenaillon, Axel Cloeckaert, Guillaume Arlet, Erick Denamur
Software Mentions: 2
Published: about 8 years ago

10.1016/j.prevetmed.2018.09.004

New approaches to pharmacosurveillance for monitoring prescription frequency, diversity, and co-prescription in a large sentinel network of companion animal veterinary practices in the United Kingdom, 2014–2016
Cited by: 24
Author(s): David A. Singleton, Fernando Sánchez‐Vizcaíno, Elena Arsevska, Susan Dawson, Philip H. Jones, P. J. W. Noble, Gina Pinchbeck, Nicola Williams, Alan Radford
Software Mentions: 2
Published: almost 8 years ago

10.1098/rspb.2015.2359

The social and ecological costs of an ‘over-extended' phenotype
Cited by: 22
Author(s): Lyndon Alexander Jordan, Sean M. Maguire, Hans A. Hofmann, Masanori Kohda
Software Mentions: 2
Published: almost 11 years ago

10.1099/mgen.0.000157

Dynamic sporulation gene co-expression networks for Bacillus subtilis 168 and the food-borne isolate Bacillus amyloliquefaciens: a transcriptomic model
Cited by: 4
Author(s): Jimmy Omony, Anne de Jong, Antonina O. Krawczyk, Robyn T. Eijlander, Oscar P. Kuipers
Software Mentions: 2
Published: over 8 years ago

10.1098/rspb.2019.0681

Hierarchical social modularity in gorillas
Cited by: 28
Author(s): Robin E. Morrison, Milou Groenenberg, Thomas Breuer, Marie L. Manguette, Peter Walsh
Software Mentions: 2
Published: over 7 years ago

10.1073/pnas.2013391118

Network hubs cease to be influential in the presence of low levels of advertising
Cited by: 6
Author(s): Gabriel Rossman, Joan M. Fisher
Software Mentions: 2
Published: over 5 years ago

10.3390/md16100356

Metabolomic Investigations on Nesterenkonia flava Revealed Significant Differences between Marine and Terrestrial Actinomycetes
Cited by: 16
Author(s): Conghua Xie, Jin‐Mei Xia, Junsong Wang, Donghai Lin, Xian‐Wen Yang
Software Mentions: 2
Published: about 8 years ago

10.1002/prot.25257

Aberrant coordination geometries discovered in the most abundant metalloproteins
Cited by: 8
Author(s): Sen Yao, Robert M. Flight, Eric C. Rouchka, Hunter N. B. Moseley
Software Mentions: 2
Published: over 9 years ago

10.1186/1475-2875-12-397

The demographics of human and malaria movement and migration patterns in East Africa
Cited by: 56
Author(s): Deepa Pindolia, Andrés J. García, Zhengjing Huang, David L. Smith, Victor A. Alegana, Abdisalan M. Noor, Robert W. Snow, Andrew J. Tatem
Software Mentions: 2
Published: almost 13 years ago

10.1186/s12933-021-01349-9

A molecular signature for the metabolic syndrome by urine metabolomics
Cited by: 21
Author(s): Chiara Bruzzone, Rubén Gil‐Redondo, Marisa Seco, Rocío Barragán, Laura de la Cruz, Claire Cannet, Hartmut Schäfer, Fang Fang, Tammo Diercks, Maider Bizkarguenaga, Beatriz González-Valle, Ana Laín, Arantza Sanz-Parra, Óscar Coltell, Ander López de Letona, Manfred Spraul, Shelly C. Lu, Elisabetta Buguianesi, Nieves Embade, Quentin M. Anstee, Dolores Corella, José M. Mato, Óscar Millet
Software Mentions: 2
Published: about 5 years ago

10.1186/s13075-016-0914-4

Stress granules and RNA processing bodies are novel autoantibody targets in systemic sclerosis
Cited by: 17
Author(s): Michael E. Johnson, Andrew V. Grassetti, Jaclyn N. Taroni, Shawn M. Lyons, Devin K. Schweppe, Jessica Gordon, Robert Spiera, Robert Lafyatis, Paul Anderson, Scott A. Gerber, Michael L. Whitfield
Software Mentions: 2
Published: over 10 years ago

10.1002/cam4.1821

Surgeon peer network characteristics and adoption of new imaging techniques in breast cancer: A study of perioperative MRI
Cited by: 12
Author(s): Sara Tannenbaum, Pamela R. Soulos, Jeph Herrin, Craig Evan Pollack, Xiao Xu, Nicholas A. Christakis, Howard P. Forman, James B. Yu, Brigid K. Killelea, Shi Yi Wang, Cary P. Gross
Software Mentions: 2
Published: almost 8 years ago

10.1093/braincomms/fcaa216

Retrospective analysis of hemispheric structural network change as a function of location and size of glioma
Cited by: 8
Author(s): Shawn D’Souza, Lisa Hirt, D. Ryan Ormond, John A. Thompson
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41416-020-01257-x

Comparative analysis of drug response and gene profiling of HER2-targeted tyrosine kinase inhibitors
Cited by: 27
Author(s): Neil T. Conlon, Jeffrey J. Kooijman, Suzanne J.C. van Gerwen, Winfried R. Mulder, Guido J.R. Zaman, Irmina Diala, Lisa DeFazio-Eli, Alshad S. Lalani, John Crown, Denis M. Collins
Software Mentions: 2
Published: almost 6 years ago

10.5194/aab-63-19-2020

Proximity patterns in water buffaloes' activities on pasture
Cited by: 0
Author(s): Eleni T. Tsiobani, M. D. Yiakoulaki, Nikolaos Hasanagas, Ioannis Antoniou
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-020-62523-9

Estimating degree–degree correlation and network cores from the connectivity of high–degree nodes in complex networks
Cited by: 14
Author(s): Raúl J. Mondragón
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-62204-7

Adaptive rewiring evolves brain-like structure in weighted networks
Cited by: 5
Author(s): Ilias Rentzeperis, Cees van Leeuwen
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-63222-1

Quantitative Analysis of Salivary Oral Bacteria Associated with Severe Early Childhood Caries and Construction of Caries Assessment Model
Cited by: 20
Author(s): Lijuan Zhang, Tongzheng Sun, Pengfei Zhu, Zheng Sun, Shanshan Li, Fan Li, Ying Zhang, Kaixuan Tan, Jie Lu, Rui Yuan, Zhenggang Chen, Dawei Guo, Qingyuan Guo, Fei Teng, Fang Yang
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-64808-5

Fungal communities and their association with nitrogen-fixing bacteria affect early decomposition of Norway spruce deadwood
Cited by: 29
Author(s): María Gómez-Brandòn, Maraike Probst, J.A. Siles, Ursula Peintner, Tommaso Bardelli, Markus Egli, Heribert Insam, Judith Ascher‐Jenull
Software Mentions: 2
Published: over 6 years ago

10.1093/biosci/biv122

Ecological Networks in Stored Grain: Key Postharvest Nodes for Emerging Pests, Pathogens, and Mycotoxins
Cited by: 67
Author(s): John Fredy Hernández Nopsa, Gregory J. Daglish, David W. Hagstrum, John F. Leslie, Thomas W. Phillips, Caterina Scoglio, Sara Thomas-Sharma, Gimme H. Walter, Karen A. Garrett
Software Mentions: 2
Published: about 11 years ago

10.1038/s41598-020-68805-6

Minimal fatal shocks in multistable complex networks
Cited by: 18
Author(s): Lukas Halekotte, Ulrike Feudel
Software Mentions: 2
Published: over 6 years ago

10.3390/biology10090921

MIDESP: Mutual Information-Based Detection of Epistatic SNP Pairs for Qualitative and Quantitative Phenotypes
Cited by: 3
Author(s): Felix Heinrich, Faisal Ramzan, Abirami Rajavel, Armin O. Schmitt, Mehmet Gültaş
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-020-70239-z

Pathway-specific model estimation for improved pathway annotation by network crosstalk
Cited by: 11
Author(s): Miguel Castresana-Aguirre, Erik L. L. Sonnhammer
Software Mentions: 2
Published: about 6 years ago

10.1186/2042-6410-4-20

Sex chromosome complement regulates expression of mood-related genes
Cited by: 54
Author(s): Marianne L. Seney, Kokomma I Ekong, Ying Ding, George C. Tseng, Etienne Sibille
Software Mentions: 2
Published: almost 13 years ago

10.1038/s41598-020-74964-3

An equity-oriented rethink of global rankings with complex networks mapping development
Cited by: 11
Author(s): Loredana Bellantuono, A. Monaco, Sabina Tangaro, Nicola Amoroso, Vincenzo Aquaro, R. Bellotti
Software Mentions: 2
Published: about 6 years ago

10.1007/s41109-021-00355-w

Lost and found: applying network analysis to public health contact tracing for HIV
Cited by: 0
Author(s): Dana K. Pasquale, Irene A. Doherty, Peter A. Leone, Ann M. Dennis, Erika Samoff, Constance S. Jones, John E Barnhart, William C. Miller
Software Mentions: 2
Published: over 5 years ago

10.1093/bioinformatics/btt486

Optimizing a global alignment of protein interaction networks
Cited by: 56
Author(s): Leonid Chindelevitch, Chengyu Ma, Chung-Shou Liao, Bonnie Berger
Software Mentions: 2
Published: about 13 years ago

10.1186/1746-6148-9-198

The performance of approximations of farm contiguity compared to contiguity defined using detailed geographical information in two sample areas in Scotland: implications for foot-and-mouth disease modelling
Cited by: 13
Author(s): Jessica Flood, Thibaud Porphyre, Michael J. Tildesley, Mark E. J. Woolhouse
Software Mentions: 2
Published: almost 14 years ago

10.1186/s12917-017-1103-7

Descriptive and network analyses of the equine contact network at an equestrian show in Ontario, Canada and implications for disease spread
Cited by: 8
Author(s): Kelsey L. Spence, Terri L. O’Sullivan, Zvonimir Poljak, Amy L. Greer
Software Mentions: 2
Published: over 9 years ago

Projects: cran: igraph

Science Score: 100/100

Bonuses:

Papers Mentioning igraph 1,555