10.18632/oncotarget.7293

Mutanome and expression of immune response genes in microsatellite stable colon cancer
Cited by: 6
Author(s): Rebeca Sanz‐Pamplona, Raúl Gil-Hoyos, Adriana López-Dóriga, M. Henar Alonso, Susanna Aussó, David G. Mollevı́, Cristina Santos, Xavier Sanjuán, Ramón Salazar, Ramón Alemany, Vı́ctor Moreno
Software Mentions: 2
Published: over 10 years ago

10.1093/gigascience/giaa019

Comparative proteomics analysis of Tibetan hull-less barley under osmotic stress via data-independent acquisition mass spectrometry
Cited by: 17
Author(s): Yulin Wang, Zha Sang, Shaohang Xu, Qijun Xu, Xingquan Zeng, Dunzhu Jabu, Hongjun Yuan
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.02863

Buffered Qualitative Stability explains the robustness and evolvability of transcriptional networks
Cited by: 34
Author(s): Luca Albergante, J. Julian Blow, T. J. Newman
Software Mentions: 2
Published: about 12 years ago

10.3389/fvets.2016.00048

Impact of Network Activity on the Spread of Infectious Diseases through the German Pig Trade Network
Cited by: 20
Author(s): Karin Lebl, Hartmut H. K. Lentz, Beate Pinior, Thomas Selhorst
Software Mentions: 2
Published: over 10 years ago

10.1111/ele.12898

Contact networks structured by sex underpin sex‐specific epidemiology of infection
Cited by: 29
Author(s): Matthew J. Silk, Nicola Weber, Lucy C. Steward, David J. Hodgson, Mike Boots, Darren P. Croft, Richard J. Delahay, Robbie A. McDonald
Software Mentions: 2
Published: almost 9 years ago

10.3389/fimmu.2018.01785

Simulation of the Dynamics of Primary Immunodeficiencies in B Cells
Cited by: 2
Author(s): Gabriel Teku, Mauno Vihinen
Software Mentions: 2
Published: about 8 years ago

10.1093/gigascience/gix054

iCAVE: an open source tool for visualizing biomolecular networks in 3D, stereoscopic 3D and immersive 3D
Cited by: 20
Author(s): Vaja Liluashvili, Selim Kalayci, Eugene Fluder, Manda Wilson, Aaron Gabow, Zeynep H. Gümüş
Software Mentions: 2
Published: over 9 years ago

10.1186/s13073-017-0507-0

Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients
Cited by: 23
Author(s): Danesh Moradigaravand, Theodore Gouliouris, Beth Blane, Plamena Naydenova, Catherine Ludden, Charles Crawley, Nicholas M. Brown, M. Estée Török, Julian Parkhill, Sharon J. Peacock
Software Mentions: 2
Published: almost 9 years ago

10.1186/s13073-014-0052-z

Molecularly and clinically related drugs and diseases are enriched in phenotypically similar drug-disease pairs
Cited by: 15
Author(s): Ingo Vogt, Jeanette Prinz, Mónica Campillos
Software Mentions: 2
Published: about 12 years ago

10.18632/oncotarget.13627

Identification of laryngeal cancer prognostic biomarkers using an inflammatory gene-related, competitive endogenous RNA network
Cited by: 19
Author(s): Qun He, Linli Tian, Hao Jiang, Jiarui Zhang, Qiang Li, Yanan Sun, Jianwen Zhao, Huijun Li, Ming Liu
Software Mentions: 2
Published: almost 10 years ago

10.3389/fmicb.2019.00234

Sperm Microbiota and Its Impact on Semen Parameters
Cited by: 110
Author(s): David Baud, Céline Pattaroni, Nicolas Vulliemoz, Vincent Castella, Benjamin J. Marsland, Miloš Stojanov
Software Mentions: 2
Published: over 7 years ago

10.3389/fcimb.2021.641174

Trypanosome KKIP1 Dynamically Links the Inner Kinetochore to a Kinetoplastid Outer Kinetochore Complex
Cited by: 10
Author(s): Lorenzo Brusini, Simon D’Archivio, Jennifer McDonald, Bill Wickstead
Software Mentions: 2
Published: over 5 years ago

10.18632/oncotarget.10734

Distinct distributions of genomic features of the 5’ and 3’ partners of coding somatic cancer gene fusions: arising mechanisms and functional implications
Cited by: 0
Author(s): Yang Zhao, Won‐Min Song, Fan Zhang, Ming‐Ming Zhou, Weijia Zhang, Martin J. Walsh, Bin Zhang
Software Mentions: 2
Published: over 10 years ago

10.3390/ijms22031097

In Silico Inference of Synthetic Cytotoxic Interactions from Paclitaxel Responses
Cited by: 0
Author(s): Jeong Hoon Lee, Kye Hwa Lee, Ju Han Kim
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13059-016-1003-3

Integrating epigenomic data and 3D genomic structure with a new measure of chromatin assortativity
Cited by: 44
Author(s): Véra Pancaldi, Enrique Carrillo de Santa Pau, Biola M. Javierre, David Juan, Peter Fraser, Mikhail Spivakov, Alfonso Valencia, Daniel Rico
Software Mentions: 2
Published: over 10 years ago

10.18632/oncotarget.21783

Identification of potential prognostic ceRNA module biomarkers in patients with pancreatic adenocarcinoma
Cited by: 14
Author(s): Lili Zhao, Bing-Rong Liu
Software Mentions: 2
Published: about 9 years ago

10.3390/ijms22073497

ceRNA Network Regulation of TGF-β, WNT, FOXO, Hedgehog Pathways in the Pharynx of Ciona robusta
Cited by: 4
Author(s): Aiti Vizzini, Angela Bonura, Laura La Paglia, Antonino Fiannaca, Massimo La Rosa, Alfonso Urso, Vincenzo Arizza
Software Mentions: 2
Published: over 5 years ago

10.1186/s13059-015-0772-4

New genes drive the evolution of gene interaction networks in the human and mouse genomes
Cited by: 85
Author(s): Wenyu Zhang, Patrick Landback, Andrea R. Gschwend, Bairong Shen, Manyuan Long
Software Mentions: 2
Published: about 11 years ago

10.3389/fgene.2021.597983

Identification of the Key Regulators of Spina Bifida Through Graph-Theoretical Approach
Cited by: 2
Author(s): Naaila Tamkeen, Suliman Yousef Alomar, Saeed Awad M Alqahtani, Abdullah Al-jurayyan, Anam Farooqui, Safia Tazyeen, Nadeem Ahmad, Romana Ishrat
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2020.01887

FcRn Overexpression Expands Diversity of the Humoral Immune Response in bFcRn Transgenic Mice
Cited by: 2
Author(s): Bence Szikora, Anita Marx, Péter K. Jani, Orsolya Pipek, Viktor Müller, István Csabai, Imre Kacskovıcs
Software Mentions: 2
Published: about 6 years ago

10.1186/gb-2013-14-8-r85

Sustained-input switches for transcription factors and microRNAs are central building blocks of eukaryotic gene circuits
Cited by: 15
Author(s): Molly Megraw, Sayan Mukherjee, Uwe Ohler
Software Mentions: 2
Published: almost 14 years ago

10.1186/1297-9686-44-17

Genetic diversity and networks of exchange: a combined approach to assess intra-breed diversity
Cited by: 12
Author(s): Jean-François Dumasy, Christel Daniaux, Isabelle Donnay, Philippe Baret
Software Mentions: 2
Published: over 14 years ago

10.2196/12914

Identifying Influence Agents That Promote Physical Activity Through the Simulation of Social Network Interventions: Agent-Based Modeling Study
Cited by: 24
Author(s): Thabo J. van Woudenberg, Bojan Simoski, Eric Fernandes de Mello Araújo, Kirsten E. Bevelander, William J. Burk, Crystal R. Smit, Laura Buijs, Michel Klein, Moniek Buijzen
Software Mentions: 2
Published: about 7 years ago

10.2196/18457

Two Decades of Research Using Taiwan’s National Health Insurance Claims Data: Bibliometric and Text Mining Analysis on PubMed
Cited by: 23
Author(s): Sheng Feng Sung, Cheng‐Yang Hsieh, Yu Hu
Software Mentions: 2
Published: over 6 years ago

10.2196/jmir.7643

Identifying Opinion Leaders to Promote Organ Donation on Social Media: Network Study
Cited by: 34
Author(s): Jingyuan Shi, Charles T. Salmon
Software Mentions: 2
Published: almost 9 years ago

10.3390/genes12050740

Evolution of Reproductive Life History in Mammals and the Associated Change of Functional Constraints
Cited by: 6
Author(s): Jiaqi Wu, Takahiro Yonezawa, Hirohisa Kishino
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2020.00659

Comprehensive Network Analysis Reveals Alternative Splicing-Related lncRNAs in Hepatocellular Carcinoma
Cited by: 8
Author(s): Junqing Wang, Xiuquan Wang, Akshay Bhat, Yixin Chen, Keli Xu, Yin‐Yuan Mo, S. Stephen Yi, Yunyun Zhou
Software Mentions: 2
Published: over 6 years ago

10.3389/fvets.2019.00071

Equine Rhinitis A Virus Infection at a Standardbred Training Facility: Incidence, Clinical Signs, and Risk Factors for Clinical Disease
Cited by: 3
Author(s): T. M. Rossi, Alison Moore, Terri L. O’Sullivan, Amy L. Greer
Software Mentions: 2
Published: over 7 years ago

10.2196/21680

Predictors of Health Information Seeking Behavior: A Systematic Review and Network Analysis (Preprint)
Cited by: 16
Author(s): Ardalan Mirzaei, Parisa Aslani, Edward Luca, Carl R. Schneider
Software Mentions: 2
Published: over 6 years ago

10.3389/fgene.2015.00307

Biological networks: the microscope of the twenty-first century?
Cited by: 0
Author(s): Frank Emmert‐Streib, Matthias Dehmer
Software Mentions: 2
Published: about 11 years ago

10.1002/ece3.7235

Roost sites of chimney swift ( <i>Chaetura pelagica</i> ) form large‐scale spatial networks
Cited by: 5
Author(s): Courtney E. le Roux, Joseph J. Nocera
Software Mentions: 2
Published: over 5 years ago

10.1098/rspb.2019.0681

Hierarchical social modularity in gorillas
Cited by: 28
Author(s): Robin E. Morrison, Milou Groenenberg, Thomas Breuer, Marie L. Manguette, Peter Walsh
Software Mentions: 2
Published: over 7 years ago

10.3389/fgene.2019.00064

Mouse Skull Mean Shape and Shape Robustness Rely on Different Genetic Architectures and Different Loci
Cited by: 11
Author(s): Ceferino Varón‐González, Luisa F. Pallares, Vincent Debat, Nicolas Navarro
Software Mentions: 2
Published: over 7 years ago

10.1186/s12967-019-1947-7

Cytokine expression in Treponema pallidum infection
Cited by: 6
Author(s): Noah Kojima, Janet Siebert, Holden T. Maecker, Yael Rosenberg-Hasson, Segundo R. León, Silver K. Vargas, Kelika A. Konda, Carlos F. Caceres, Jeffrey D. Klausner
Software Mentions: 2
Published: over 7 years ago

10.1098/rspb.2015.2359

The social and ecological costs of an ‘over-extended' phenotype
Cited by: 22
Author(s): Lyndon Alexander Jordan, Sean M. Maguire, Hans A. Hofmann, Masanori Kohda
Software Mentions: 2
Published: almost 11 years ago

10.1016/j.prevetmed.2018.09.004

New approaches to pharmacosurveillance for monitoring prescription frequency, diversity, and co-prescription in a large sentinel network of companion animal veterinary practices in the United Kingdom, 2014–2016
Cited by: 24
Author(s): David A. Singleton, Fernando Sánchez‐Vizcaíno, Elena Arsevska, Susan Dawson, Philip H. Jones, P. J. W. Noble, Gina Pinchbeck, Nicola Williams, Alan Radford
Software Mentions: 2
Published: almost 8 years ago

10.1073/pnas.2013391118

Network hubs cease to be influential in the presence of low levels of advertising
Cited by: 6
Author(s): Gabriel Rossman, Joan M. Fisher
Software Mentions: 2
Published: over 5 years ago

10.1016/j.epidem.2015.02.008

Controlling infectious disease through the targeted manipulation of contact network structure
Cited by: 59
Author(s): M. Carolyn Gates, Mark Woolhouse
Software Mentions: 2
Published: about 11 years ago

10.1002/prot.25257

Aberrant coordination geometries discovered in the most abundant metalloproteins
Cited by: 8
Author(s): Sen Yao, Robert M. Flight, Eric C. Rouchka, Hunter N. B. Moseley
Software Mentions: 2
Published: over 9 years ago

10.3389/fimmu.2021.644548

Delineating the Association Between Soluble CD26 and Autoantibodies Against G-Protein Coupled Receptors, Immunological and Cardiovascular Parameters Identifies Distinct Patterns in Post-Infectious vs. Non-Infection-Triggered Myalgic Encephalomyelitis/Chronic Fatigue Syndrome
Cited by: 12
Author(s): Marvin Szklarski, Helma Freitag, Siegfried Lorenz, S Becker, Franziska Sotzny, Sandra Bauer, Jelka Hartwig, Harald Heidecke, Kirsten Wittke, Claudia Kedor, Leif G. Hanitsch, Patricia Grabowski, Nuno Sepúlveda, Carmen Scheibenbogen
Software Mentions: 2
Published: over 5 years ago

10.3390/genes11030247

Network Properties of Cancer Prognostic Gene Signatures in the Human Protein Interactome
Cited by: 0
Author(s): Jifeng Zhang, Shoubao Yan, Cheng Jiang, Zhicheng Ji, Chenrun Wang, Weidong Tian
Software Mentions: 2
Published: over 6 years ago

10.1155/2020/4323989

Korean Traditional Medicine in Treating Patients with Mild Cognitive Impairment: A Multicenter Prospective Observational Case Series
Cited by: 9
Author(s): Yujin Choi, Young Eun Kim, Ui Min Jerng, Hwan Kim, Sung Ik Lee, Ga-Na Kim, Seung-Hun Cho, Hyung Won Kang, In Chul Jung, Kyungsun Han, Jun-Hwan Lee
Software Mentions: 2
Published: over 6 years ago

10.1111/jcmm.14792

Integrative transcriptomic and proteomic analysis reveals CD9/ITGA4/PI3K‐Akt axis mediates trabecular meshwork cell apoptosis in human glaucoma
Cited by: 14
Author(s): Junwei Yan, Xiaofeng Yang, Xuefei Jiao, Xian Yang, Mingzhou Guo, Yunqing Chen, Lu Zhan, Wenshi Chen
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijerph17010090

Potential Confounders in the Analysis of Brazilian Adolescent’s Health: A Combination of Machine Learning and Graph Theory
Cited by: 3
Author(s): Amanda Yumi Ambriola Oku, Guilherme Augusto Zimeo Morais, Ana Paula Arantes Bueno, André Fujita, João Ricardo Sato
Software Mentions: 2
Published: almost 7 years ago

10.3390/genes10100776

Patterns and Constraints in the Evolution of Sperm Individualization Genes in Insects, with an Emphasis on Beetles
Cited by: 1
Author(s): Helena I. Vizán‐Rico, Christoph Mayer, Malte Petersen, Duane D. McKenna, Xin Zhou, Jesús Gómez‐Zurita
Software Mentions: 2
Published: about 7 years ago

10.3390/ijerph17051764

Relationship of Salivary Microbiome with the Worsening of the Periodontal Health Status in Young Adults: A 3-Year Cohort Study
Cited by: 1
Author(s): Monirul Islam, Daisuke Ekuni, Naoki Toyama, Terumasa Kobayashi, Kohei Fujimori, Yuzo Uchida, Daiki Fukuhara, Ayano Taniguchi-Tabata, Koichi Kataoka, Yoshiaki Iwasaki, Manabu Morita
Software Mentions: 2
Published: over 6 years ago

10.3390/ijerph17124182

Statistical and Network-Based Analysis of Italian COVID-19 Data: Communities Detection and Temporal Evolution
Cited by: 12
Author(s): Marianna Milano, Mario Cannataro
Software Mentions: 2
Published: over 6 years ago

10.1111/jvim.16058

Peri‐ictal magnetic resonance imaging characteristics in dogs with suspected idiopathic epilepsy
Cited by: 11
Author(s): Aran Nagendran, J. Fraser McConnell, Luisa De Risio, Roberto José‐López, R. Gutierrez Quintana, Kelsey Robinson, Simon Platt, Daniel Sánchez Masián, Thomas W. Maddox, Rita Gonçalves
Software Mentions: 2
Published: over 5 years ago

10.1155/2011/238743

Contact Heterogeneity and Phylodynamics: How Contact Networks Shape Parasite Evolutionary Trees
Cited by: 17
Author(s): Eamon B. O’Dea, Claus O. Wilke
Software Mentions: 2
Published: almost 16 years ago

10.3390/ijerph18083922

Time Granularity Impact on Propagation of Disruptions in a System-of-Systems Simulation of Infrastructure and Business Networks
Cited by: 3
Author(s): Mateusz Iwo Dubaniowski, Hans Rudolf Heinimann
Software Mentions: 2
Published: over 5 years ago

10.3390/insects11020081

Allometry and Fighting Behaviour of a Dimorphic Stag Beetle Cyclommatus mniszechi (Coleoptera: Lucanidae)
Cited by: 9
Author(s): Zhen Yi Chen, Yu-Wei Hsu, Chung Ping Lin
Software Mentions: 2
Published: almost 7 years ago

10.3390/e23091204

Granger Causality among Graphs and Application to Functional Brain Connectivity in Autism Spectrum Disorder
Cited by: 4
Author(s): Adele Ribeiro, Maciel Calebe Vidal, João Ricardo Sato, André Fujita
Software Mentions: 2
Published: about 5 years ago

10.3390/ijerph18168388

The Structure of Social Support in Confidant Networks: Implications for Depression
Cited by: 4
Author(s): Liyuan Wang, Lindsay E. Young, Lynn C. Miller
Software Mentions: 2
Published: about 5 years ago

10.1186/s40249-020-00668-5

Pretreatment HIV drug resistance in adults initiating antiretroviral therapy in China, 2017
Cited by: 19
Author(s): Ran Kang, Shanshan Liang, Yanhui Ma, Shu Liang, Lin Xiao, Xinhui Zhang, Hongzhou Lu, Xun Xu, Suxin Luo, Xiaoguang Sun, Lin Chen, Jianmei He, Guohui Wu, Lingjie Liao, Hui Xing, Yiming Shao, Yuhua Ruan
Software Mentions: 2
Published: over 6 years ago

10.1186/s13012-021-01150-y

Influence of physician networks on prescribing a new ingredient combination in heart failure: a longitudinal claim data-based study
Cited by: 2
Author(s): Christine Arnold, Jan Koetsenruijter, Johanna Forstner, Frank Peters-Klimm, Michel Wensing
Software Mentions: 2
Published: about 5 years ago

10.3390/e22121383

Research on Community Detection in Complex Networks Based on Internode Attraction
Cited by: 5
Author(s): Jinfang Sheng, Cheng Liu, Long Chen, Bin Wang, Junkai Zhang
Software Mentions: 2
Published: almost 6 years ago

10.1007/s00442-021-04967-y

The role of habitat configuration in shaping animal population processes: a framework to generate quantitative predictions
Cited by: 8
Author(s): Peng He, Pierre‐Olivier Montiglio, Marius Somveille, Maurício Cantor, Dan Farine
Software Mentions: 2
Published: over 5 years ago

10.1186/s12866-021-02092-7

Comparison and interpretation of characteristics of Rhizosphere microbiomes of three blueberry varieties
Cited by: 10
Author(s): Yan Zhang, Wei Wang, Zuorui Shen, Jingjing Wang, Yajun Chen, Dong Wang, Gang Liu, Maozhen Han
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-70239-z

Pathway-specific model estimation for improved pathway annotation by network crosstalk
Cited by: 11
Author(s): Miguel Castresana-Aguirre, Erik L. L. Sonnhammer
Software Mentions: 2
Published: about 6 years ago

10.1186/1755-8794-6-S2-S2

Key genes for modulating information flow play a temporal role as breast tumor coexpression networks are dynamically rewired by letrozole
Cited by: 5
Author(s): Nadia M. Penrod, Jason H. Moore
Software Mentions: 2
Published: almost 14 years ago

10.1038/s41598-020-74964-3

An equity-oriented rethink of global rankings with complex networks mapping development
Cited by: 11
Author(s): Loredana Bellantuono, A. Monaco, Sabina Tangaro, Nicola Amoroso, Vincenzo Aquaro, R. Bellotti
Software Mentions: 2
Published: about 6 years ago

10.18632/aging.202995

Gene expression signatures differentiating major depressive disorder from subsyndromal symptomatic depression
Cited by: 2
Author(s): Guoqin Hu, Shunying Yu, Chen Yuan, Hong Wu, Zuowei Wang, Ran Zhang, Dongxiang Wang, Zezhi Li, Zhenghui Yi, Yiru Fang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12879-019-3734-8

Social network analysis and whole genome sequencing in a cohort study to investigate TB transmission in an educational setting
Cited by: 15
Author(s): Simon Packer, Claire Green, Ellen Brooks-Pollock, Katerina Chaintarli, Sarah Harrison, Charles R. Beck
Software Mentions: 2
Published: over 7 years ago

10.1186/s12879-017-2529-z

Patterns of antimicrobial resistance in intensive care unit patients: a study in Vietnam
Cited by: 31
Author(s): Giang M. Tran, Thao P. Ho-Le, Duc T. Ha, Chau H. Tran-Nguyen, Tuyet S. M. Nguyen, Thao Thi Ngoc Pham, Thao Thi Thu Nguyen, Dung Nguyen, Hoa Q. Hoang, Ngoc Van Tran, Tuan V. Nguyen
Software Mentions: 2
Published: over 9 years ago

10.1186/s12913-019-4084-3

Involving end-users in the design of an audit and feedback intervention in the emergency department setting – a mixed methods study
Cited by: 16
Author(s): Welmoed K. van Deen, Edward S. Cho, Kathryn Pustolski, Dennis Wixon, Shona Lamb, Thomas W. Valente, Michael Menchine
Software Mentions: 2
Published: over 7 years ago

10.1186/s12913-018-3038-5

On designing of a low leakage patient-centric provider network
Cited by: 5
Author(s): Yuchen Zheng, Lin Kang, Thomas White, Jeremy Pickreign, Gigi Yuen-Reed
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-021-87318-4

Fragmented sleep relates to hallucinations across perceptual modalities in the general population
Cited by: 5
Author(s): Sanne Brederoo, J N de Boer, Jacqueline de Vries, Mascha M J Linszen, Iris Sommer
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-87555-7

Proteomic profiling of the rat hippocampus from the kindling and pilocarpine models of epilepsy: potential targets in calcium regulatory network
Cited by: 14
Author(s): Leila Sadeghi, Albert A. Rizvanov, Bahareh Dabirmanesh, И. И. Салафутдинов, Mohammad Sayyah, Amir Shojaei, Javad Zahiri, Javad Mirnajafi‐Zadeh, Babak Khorsand, Khosro Khajeh, Yaghoub Fathollahi
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0213221

A meta-analysis of multiple matched aCGH/expression cancer datasets reveals regulatory relationships and pathway enrichment of potential oncogenes
Cited by: 1
Author(s): Richard Newton, Lorenz Wernisch
Software Mentions: 2
Published: over 7 years ago

10.1186/s12864-017-3777-4

Functional regression method for whole genome eQTL epistasis analysis with sequencing data
Cited by: 3
Author(s): Kelin Xu, Li Jin, Momiao Xiong
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0172867

Network analysis of wildfire transmission and implications for risk governance
Cited by: 71
Author(s): Alan A. Ager, Cody Evers, Michelle A. Day, Haiganoush K. Preisler, Ana M. G. Barros, Max Nielsen-Pincus
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0140085

Seasonal Influenza Vaccination amongst Medical Students: A Social Network Analysis Based on a Cross-Sectional Study
Cited by: 19
Author(s): Rhiannon Edge, Joseph J. Heath, Barry Rowlingson, Thomas Keegan, Rachel Isba
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0195161

In vitro co-cultures of human gut bacterial species as predicted from co-occurrence network analysis
Cited by: 39
Author(s): Dás P, Boyang Ji, Petia Kovatcheva‐Datchary, Fredrik Bäckhed, Jens Nielsen
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0095049

The Potential Connectivity of Waterhole Networks and the Effectiveness of a Protected Area under Various Drought Scenarios
Cited by: 22
Author(s): Georgina O’Farrill, Kim Gauthier Schampaert, Bronwyn Rayfield, Örjan Bodin, Sophie Calmé, Raja Sengupta, Andrew Gonzalez
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0237168

Spatiotemporal network structure among “friends of friends” reveals contagious disease process
Cited by: 2
Author(s): Carmel Witte, Laura L. Hungerford, Bruce A. Rideout, Rebecca Papendick, James H. Fowler
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0205295

Combining multi-OMICs information to identify key-regulator genes for pleiotropic effect on fertility and production traits in beef cattle
Cited by: 31
Author(s): Pablo Augusto de Souza Fonseca, Samir Id‐Lahoucine, Antônio Reverter, Juan F. Medrano, M. R. S. Fortes, J. Casellas, F. Miglior, Luiz F. Brito, Maria Raquel Santos Carvalho, F.S. Schenkel, Loan Nguyen, Laércio R. Porto-Neto, M. G. Thomas, Ángela Cánovas
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0087042

Positive Network Assortativity of Influenza Vaccination at a High School: Implications for Outbreak Risk and Herd Immunity
Cited by: 77
Author(s): Victoria C Barclay, Timo Smieszek, Jianping He, Guohong Cao, Jeanette J. Rainey, Hongjiang Gao, Amra Uzicanin, Marcel Salathé
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0112775

Time Development in the Early History of Social Networks: Link Stabilization, Group Dynamics, and Segregation
Cited by: 17
Author(s): Jesper Bruun, I. G. Bearden
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0190001

Graph complexity analysis identifies an ETV5 tumor-specific network in human and murine low-grade glioma
Cited by: 5
Author(s): Yuan Pan, Christina Durón, Erin C. Bush, Yu Ma, Peter A. Sims, David H. Gutmann, Ami Radunskaya, Johanna Hardin
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0020298

Time-Ordered Networks Reveal Limitations to Information Flow in Ant Colonies
Cited by: 100
Author(s): Benjamin Blonder, Anna Dornhaus
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0033799

Hierarchy Measure for Complex Networks
Cited by: 193
Author(s): Enys Mones, Lilla Vicsek, Tamás Vicsek
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0176751

Using null models to infer microbial co-occurrence networks
Cited by: 64
Author(s): Nora Connor, Albert Barberán, Aaron Clauset
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0223779

Inhibitory interaction networks among coevolved Streptomyces populations from prairie soils
Cited by: 5
Author(s): Daniel Schlatter, Zewei Song, Patricia Vaz-Jauri, Linda L. Kinkel
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0170817

Trends of the World Input and Output Network of Global Trade
Cited by: 24
Author(s): R. Maria del Rio-Chanona, Jelena Grujić, Henrik Jeldtoft Jensen
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0230693

Urban foraging: Land management policy, perspectives, and potential
Cited by: 27
Author(s): Mallika Sardeshpande, Charlie M. Shackleton
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0241453

Keystone actors do not act alone: A business ecosystem perspective on sustainability in the global clothing industry
Cited by: 16
Author(s): Jacob Hileman, Ivan Simon Kallstenius, Tiina Häyhä, Celinda Palm, Sarah Cornell
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0121002

Fast Approximate Quadratic Programming for Graph Matching
Cited by: 115
Author(s): Joshua T. Vogelstein, John M. Conroy, Vince Lyzinski, Louis J. Podrazik, Steven G. Kratzer, Eric T. Harley, Donniell E. Fishkind, R. Jacob Vogelstein, Carey E. Priebe
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0213741

Movements of scalloped hammerhead sharks (Sphyrna lewini) at Cocos Island, Costa Rica and between oceanic islands in the Eastern Tropical Pacific
Cited by: 37
Author(s): Elena Nalesso, Alex Hearn, Óscar Sosa-Nishizaki, Todd Steiner, Alex Antoniou, Andrew Reid, Sandra Bessudo, Germán Soler, A. Peter Klimley, Frida Lara, James T. Ketchum, Rándall Arauz
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0161474

BRIDES: A New Fast Algorithm and Software for Characterizing Evolving Similarity Networks Using Breakthroughs, Roadblocks, Impasses, Detours, Equals and Shortcuts
Cited by: 4
Author(s): Étienne Lord, Margaux Le Cam, Éric Bapteste, Raphaël Méheust, Vladimir Makarenkov, François‐Joseph Lapointe
Software Mentions: 2
Published: about 10 years ago

10.1186/s12864-019-6302-0

A novel algorithm for alignment of multiple PPI networks based on simulated annealing
Cited by: 2
Author(s): Jialu Hu, Junhao He, Jing Li, Yiqun Gao, Yanyan Zheng, Xuequn Shang
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0237471

Diffusing science through social networks: The case of breastfeeding communication on Twitter
Cited by: 9
Author(s): Sara Moukarzel, Martin Rehm, Miguel del Fresno, Alan J. Daly
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0007441

Stability of Metabolic Correlations under Changing Environmental Conditions in Escherichia coli – A Systems Approach
Cited by: 34
Author(s): Jędrzej Szymański, Szymon Józefczuk, Zoran Nikoloski, Joachim Selbig, Victoria J. Nikiforova, Gareth Catchpole, Lothar Willmitzer
Software Mentions: 2
Published: about 17 years ago

10.1371/journal.pone.0200079

Urothelial bladder cancer may suppress perforin expression in CD8+ T cells by an ICAM-1/TGFβ2 mediated pathway
Cited by: 14
Author(s): Ciputra Adijaya Hartana, Emma Ahlén Bergman, Ali Zirakzadeh, David H. Krantz, Malin E. Winerdal, Max Winerdal, Markus Johansson, Farhood Alamdari, Tomasz Jakubczyk, Hans Glise, Katrine Riklund, Amir Sherif, Ola Winqvist
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0158161

How to Study the City on Instagram
Cited by: 54
Author(s): John D. Boy, Justus Uitermark
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0160919

Anomaly Detection in Host Signaling Pathways for the Early Prognosis of Acute Infection
Cited by: 12
Author(s): Kun Wang, Stanley Langevin, Corey S. O’Hern, Mark D. Shattuck, Serenity Ogle, Adriana Forero, Juliet Morrison, Richard A. Slayden, Michael G. Katze, Michael Kirby
Software Mentions: 2
Published: about 10 years ago

10.1186/1471-2164-13-438

Exploration of the core metabolism of symbiotic bacteria
Cited by: 12
Author(s): Cecília C. Klein, Ludovic Cottret, Janice Kielbassa, Hubert Charles, Christian Gautier, Ana Tereza Ribeiro de Vasconcelos, Vincent Lacroix, Marie‐France Sagot
Software Mentions: 2
Published: almost 15 years ago

10.1371/journal.pone.0016932

Novel Feature for Catalytic Protein Residues Reflecting Interactions with Other Residues
Cited by: 11
Author(s): Yizhou Li, Gongbing Li, Zhining Wen, Hui Yin, Manman Hu, Jiamin Xiao, Menglong Li
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0238626

Do economic shocks spread randomly?: A topological study of the global contagion network
Cited by: 4
Author(s): Tamás Sebestyén, Zita Iloskics
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0174671

Collaboration patterns in the German political science co-authorship network
Cited by: 14
Author(s): Philip Leifeld, Sandra Andrea Wankmüller, Valentin Tim Zacharias Berger, Karin Ingold, Christiane Steiner
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-021-90171-0

Network-based analysis of key regulatory genes implicated in Type 2 Diabetes Mellitus and Recurrent Miscarriages in Turner Syndrome
Cited by: 3
Author(s): Anam Farooqui, Alaa Alhazmi, Shafiul Haque, Naaila Tamkeen, Mahboubeh Mehmankhah, Safia Tazyeen, Sher Ali, Romana Ishrat
Software Mentions: 2
Published: over 5 years ago