Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: iRafNet

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/iRafNet

Integrative Random Forest for Gene Regulatory Network Inference
2 versions
Latest release: about 8 years ago
114 downloads last month

Papers Mentioning iRafNet 8

MKL-GRNI: A parallel multiple kernel learning approach for supervised inference of large-scale gene regulatory networks
Cited by: 4
Author(s): Nisar Ahmad Wani, Khalid Raza
Software Mentions: 3
Published: almost 4 years ago

10.3389/fgene.2019.00535

Inferring Interaction Networks From Multi-Omics Data
Cited by: 95
Author(s): Johann S. Hawe, Fabian J. Theis, Matthias Heinig
Software Mentions: 3
Published: over 5 years ago

10.1186/s12918-018-0635-1

MICRAT: a novel algorithm for inferring gene regulatory networks using time series gene expression data
Cited by: 16
Author(s): Beifang Yang, Yaohui Xu, Andrew S. Maxwell, Wonryull Koh, Ping Gong, Chaoyang Zhang
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12859-020-03639-7

PFBNet: a priori-fused boosting method for gene regulatory network inference
Cited by: 8
Author(s): Dandan Che, Shun Guo, Qingshan Jiang, Lifei Chen
Software Mentions: 2
Published: over 4 years ago

10.1186/s12859-019-3042-8

BINDER: computationally inferring a gene regulatory network for Mycobacterium abscessus
Cited by: 5
Author(s): Patrick M. Staunton, Aleksandra A. Miranda-CasoLuengo, Brendan J. Loftus, Isobel Claire Gormley
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-020-63347-3

OutPredict: multiple datasets can improve prediction of expression and inference of causality
Cited by: 11
Author(s): Jacopo Cirrone, Matthew D. Brooks, Richard Bonneau, Gloria M. Coruzzi, Dennis Shasha
Software Mentions: 2
Published: over 4 years ago

10.1038/srep41174

Enhancing gene regulatory network inference through data integration with markov random fields
Cited by: 31
Author(s): Michael Banf, Seung Y. Rhee
Software Mentions: 2
Published: almost 8 years ago

10.3389/fgene.2020.595912

Inference of Genetic Networks From Time-Series and Static Gene Expression Data: Combining a Random-Forest-Based Inference Method With Feature Selection Methods
Cited by: 6
Author(s): Shiushichi Kimura, Ryo Fukutomi, Masato Tokuhisa, Mariko Okada
Software Mentions: 1
Published: almost 4 years ago