cran: iCluster | Projects | Ecosyste.ms: Papers

10.1186/s13023-020-01376-x

A scoping review and proposed workflow for multi-omic rare disease research
Cited by: 18
Author(s): Katie Kerr, Helen McAneney, Laura Smyth, Caitlin Bailie, Shane McKee, Amy Jayne McKnight
Software Mentions: 2
Published: over 4 years ago

10.12688/f1000research.20928.1

Precision medicine in inflammatory bowel disease: concept, progress and challenges
Cited by: 52
Author(s): Simon Borg–Bartolo, Ray Boyapati, Jack Satsangi, Rahul Kalla
Software Mentions: 1
Published: almost 5 years ago

10.1186/1687-4153-2013-13

Bayesian methods for expression-based integration of various types of genomics data
Cited by: 26
Author(s): Elizabeth M. Jennings, Jeffrey S. Morris, Raymond J. Carroll, Ganiraju C. Manyam, Veerabhadran Baladandayuthapani
Software Mentions: 1
Published: about 11 years ago

10.1186/s13073-020-00804-8

Pan-cancer identification of clinically relevant genomic subtypes using outcome-weighted integrative clustering
Cited by: 18
Author(s): Arshi Arora, Adam B. Olshen, Venkatraman Seshan, Ronglai Shen
Software Mentions: 1
Published: about 4 years ago

10.1038/s42003-020-01491-2

Integrative multi-omics analysis of muscle-invasive bladder cancer identifies prognostic biomarkers for frontline chemotherapy and immunotherapy
Cited by: 19
Author(s): Qianxing Mo, Roger Li, Dennis O. Adeegbe, Guang Peng, Keith S. Chan
Software Mentions: 1
Published: about 4 years ago

10.3390/cancers11050599

Molecular and Morphological Profiling of Lung Cancer: A Foundation for “Next-Generation” Pathologists and Oncologists
Cited by: 39
Author(s): Jumpei Kashima, Rui Kitadai, Yusuke Okuma
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0117135

SPARCoC: A New Framework for Molecular Pattern Discovery and Cancer Gene Identification
Cited by: 4
Author(s): Shiqian Ma, Daniel Johnson, Cody Ashby, Donghai Xiong, Carole L. Cramer, Jason H. Moore, Shuzhong Zhang, Xiuzhen Huang
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0035236

Integrative Subtype Discovery in Glioblastoma Using iCluster
Cited by: 192
Author(s): Ronglai Shen, Qianxing Mo, Nikolaus Schultz, Venkatraman Seshan, Adam B. Olshen, Jason T. Huse, Marc Ladanyi, Chris Sander
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0024709

Time to Recurrence and Survival in Serous Ovarian Tumors Predicted from Integrated Genomic Profiles
Cited by: 96
Author(s): Parminder K. Mankoo, Ronglai Shen, Nikolaus Schultz, Douglas A. Levine, Chris Sander
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pcbi.1002227

Patient-Specific Data Fusion Defines Prognostic Cancer Subtypes
Cited by: 79
Author(s): Yinyin Yuan, Richard S. Savage, Florian Markowetz
Software Mentions: 1
Published: about 13 years ago

10.1186/s40364-017-0082-y

Machine learning and systems genomics approaches for multi-omics data
Cited by: 131
Author(s): Eugene Lin, Hsien‐Yuan Lane
Software Mentions: 1
Published: almost 8 years ago

10.1002/prca.201800137

Integrative Clustering in Mass Spectrometry Imaging for Enhanced Patient Stratification
Cited by: 7
Author(s): Benjamin Balluff, Achim Buck, Marta Martín-Lorenzo, Frédéric Dewez, Rupert Langer, Liam A. McDonnell, Axel Walch, Ron M. A. Heeren
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12918-016-0358-0

High-dimensional omics data analysis using a variable screening protocol with prior knowledge integration (SKI)
Cited by: 13
Author(s): Cong Liu, Jianping Jiang, Jianlei Gu, Zhangsheng Yu, Tao Wang, Hui Lu
Software Mentions: 1
Published: about 8 years ago

10.1186/s12918-018-0556-z

A computational framework for complex disease stratification from multiple large-scale datasets
Cited by: 27
Author(s): Bertrand De Meulder, Diane Lefaudeux, Aruna T. Bansal, Alexander Mazein, Amphun Chaiboonchoe, Hassan Ahmed, Irina Balaur, Mansoor Saqi, Johann Pellet, Stéphane Ballereau, Nathanaël Lemonnier, Kai Sun, Ioannis Pandis, Xian Yang, Manohara Kanangana Batuwitage, Kosmas Kretsos, Jonathan van Eyll, Alun Bedding, Timothy Davison, P M Dodson, Christopher Larminie, Anthony D. Postle, Julie Corfield, Ratko Djukanović, Kian Fan Chung, Ian M. Adcock, Yike Guo, Peter J. Sterk, Alexander Manta, Anthony Rowe, Frédéric Baribaud, Charles Auffray
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2229-13-81

LIPS database with LIPService: a microscopic image database of intracellular structures in Arabidopsis guard cells
Cited by: 10
Author(s): Takumi Higaki, Natsumaro Kutsuna, Seiichiro Hasezawa
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2105-10-94

Statistical and visual differentiation of subcellular imaging
Cited by: 28
Author(s): Nicholas A. Hamilton, Jack T. H. Wang, Markus C. Kerr, Rohan D. Teasdale
Software Mentions: 1
Published: over 15 years ago

10.18632/oncotarget.28032

Epigenetic signatures differentiate uterine and soft tissue leiomyosarcoma
Cited by: 7
Author(s): Nesrin M. Hasan, Anup Sharma, Nensi Ruzgar, Hari A. Deshpande, Kelly Olino, Sajid Khan, Nita Ahuja
Software Mentions: 1
Published: over 3 years ago

10.1186/s12920-015-0154-5

Integrating heterogeneous genomic data to accurately identify disease subtypes
Cited by: 2
Author(s): Xianwen Ren, Hua Fu, Qi Jin
Software Mentions: 1
Published: about 9 years ago

10.1186/s12864-019-6285-x

Integrate multi-omics data with biological interaction networks using Multi-view Factorization AutoEncoder (MAE)
Cited by: 39
Author(s): Tao Ma, Aidong Zhang
Software Mentions: 1
Published: about 5 years ago

10.1186/s40425-019-0824-5

Angiogenesis and immune checkpoint inhibitors as therapies for hepatocellular carcinoma: current knowledge and future research directions
Cited by: 109
Author(s): Marc Hilmi, Cindy Neuzillet, Julien Caldéraro, Fouad Lafdil, Jean‐Michel Pawlotsky, Benoît Rousseau
Software Mentions: 1
Published: about 5 years ago

10.1186/s12864-015-2223-8

Fast dimension reduction and integrative clustering of multi-omics data using low-rank approximation: application to cancer molecular classification
Cited by: 110
Author(s): Dingming Wu, Dongfang Wang, Michael Qiwei Zhang, Jin Gu
Software Mentions: 1
Published: about 9 years ago

10.18632/aging.102189

Trans-omics biomarker model improves prognostic prediction accuracy for early-stage lung adenocarcinoma
Cited by: 13
Author(s): Xuesi Dong, Ruyang Zhang, Jieyu He, Lihui Lai, Raphael N. Alolga, Sipeng Shen, Ying Zhu, Dongfang You, Lijuan Lin, Chao Chen, Yang Zhao, Weiwei Duan, Su Li, Andrea T. Shafer, Moran Salama, Thomas Fleischer, Maria Moksnes Bjaanæs, Anna Karlsson, Maria Planck, Rui Wang, Johan Staaf, Åslaug Helland, Manel Esteller, Yongyue Wei, Feng Chen, David C. Christiani
Software Mentions: 1
Published: over 5 years ago

10.1186/s12859-016-0912-1

Multiplex methods provide effective integration of multi-omic data in genome-scale models
Cited by: 37
Author(s): Claudio Angione, Maxwell Conway, Píetro Lió
Software Mentions: 1
Published: almost 9 years ago

10.3389/fimmu.2021.723172

Signatures of Multi-Omics Reveal Distinct Tumor Immune Microenvironment Contributing to Immunotherapy in Lung Adenocarcinoma
Cited by: 9
Author(s): Ziqi Huang, Baihui Li, Yan Guo, Lei Wu, Fan Kou, Lili Yang
Software Mentions: 1
Published: over 3 years ago

10.3389/fonc.2021.691950

Identification of NAA40 as a Potential Prognostic Marker for Aggressive Liver Cancer Subtypes
Cited by: 5
Author(s): Costas Koufaris, Antonis Kirmizis
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2021.655697

Hepatocellular Carcinoma Immune Landscape and the Potential of Immunotherapies
Cited by: 108
Author(s): Julie Giraud, Domitille Chalopin, Jean‐Frédéric Blanc, Maya Saleh
Software Mentions: 1
Published: almost 4 years ago

10.3389/fgene.2019.00020

Discovering Cancer Subtypes via an Accurate Fusion Strategy on Multiple Profile Data
Cited by: 33
Author(s): Limin Jiang, Yunhua Xiao, Yongsheng Ding, Jijun Tang, Fei Guo
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2019.00236

Simultaneous Interrogation of Cancer Omics to Identify Subtypes With Significant Clinical Differences
Cited by: 39
Author(s): Aodan Xu, Jiazhou Chen, Hong Peng, Guoqiang Han, Hongming Cai
Software Mentions: 1
Published: over 5 years ago

10.3390/genes9070314

A Similarity Regression Fusion Model for Integrating Multi-Omics Data to Identify Cancer Subtypes
Cited by: 13
Author(s): Yang Guo, Jianning Zheng, Xuequn Shang, Zhanhuai Li
Software Mentions: 1
Published: over 6 years ago

10.3389/fchem.2020.572471

Activable Multi-Modal Nanoprobes for Imaging Diagnosis and Therapy of Tumors
Cited by: 8
Author(s): Yan Yang, Saisai Yue, Yuanyuan Qiao, Peisen Zhang, Ni Jiang, Zhenbo Ning, Chunyan Liu, Yi Hou
Software Mentions: 1
Published: over 3 years ago

10.1002/advs.202002504

Solutions to the Drawbacks of Photothermal and Photodynamic Cancer Therapy
Cited by: 235
Author(s): Xueqing Deng, Zhang Shao, Yanli Zhao
Software Mentions: 1
Published: almost 4 years ago

10.3389/fnagi.2020.553635

Phenotype-Agnostic Molecular Subtyping of Neurodegenerative Disorders: The Cincinnati Cohort Biomarker Program (CCBP)
Cited by: 21
Author(s): Andrea Sturchio, Luca Marsili, Joaquín A. Vizcarra, Alok Dwivedi, Marcelo Kauffman, Andrew P. Duker, Peixin Lu, Michael W. Pauciulo, Benjamin D. Wissel, Emily J. Hill, Benjamin Stecher, Elizabeth Keeling, Achala Vagal, Lily Wang, David B. Haslam, Matthew J. Robson, Caroline M. Tanner, Daniel W. Hagey, Samir El Andaloussi, Kariem Ezzat, Ronan M. T. Fleming, Long Lu, Max A. Little, Alberto J. Espay
Software Mentions: 1
Published: about 4 years ago

10.1186/s12859-015-0680-3

MVDA: a multi-view genomic data integration methodology
Cited by: 60
Author(s): Angela Serra, Michele Fratello, Vittorio Fortino, Giancarlo Raiconi, Roberto Tagliaferri, Dario Greco
Software Mentions: 1
Published: over 9 years ago

Ecosyste.ms: Papers

Projects: cran: iCluster

Papers Mentioning iCluster 134