Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: iC10

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/iC10

A Copy Number and Expression-Based Classifier for Breast Tumours
8 versions
Latest release: almost 6 years ago
382 downloads last month

Papers Mentioning iC10 6

The Genomic and Immune Landscapes of Lethal Metastatic Breast Cancer
Cited by: 85
Author(s): Leticia De Mattos-Arruda, Stephen‐John Sammut, Edith Ross, Rachael Bashford-Rogers, Erez Greenstein, Havell Markus, Sandro Morganella, Yvonne H. F. Teng, Yosef E. Maruvka, Bernard Pereira, Oscar M. Rueda, Suet-Feung Chin, Tania Contente-Cuomo, Regina Mayor, Alexandra Arias, H. Raza Ali, Wei Cope, Daniel Guimarães Tiezzi, Aliakbar Dariush, Tauanne Dias Amarante, Dan Reshef, Nikaoly Ciriaco, Elena Martinez-Saez, Vicente Peg, Santiago Ramón y Cajal, Javier Cortés, George S. Vassiliou, Gad Getz, Serena Nik-Zainal, Muhammed Murtaza, Nir Friedman, Florian Markowetz, Joan Seoane, Carlos Caldas
Software Mentions: 5
Published: over 5 years ago

10.1186/s13059-014-0431-1

Genome-driven integrated classification of breast cancer validated in over 7,500 samples
Cited by: 173
Author(s): H. Raza Ali, Oscar M. Rueda, Suet-Feung Chin, Christina Curtis, Mark J. Dunning, Samuel Aparicio, Carlos Caldas
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.pmed.1002194

Patterns of Immune Infiltration in Breast Cancer and Their Clinical Implications: A Gene-Expression-Based Retrospective Study
Cited by: 401
Author(s): H. Raza Ali, L Chlon, Paul D.P. Pharoah, Florian Markowetz, Carlos Caldas
Software Mentions: 4
Published: almost 8 years ago

10.1186/s13058-017-0881-y

Gene expression modules in primary breast cancers as risk factors for organotropic patterns of first metastatic spread: a case control study
Cited by: 5
Author(s): Katherine Lawler, Efterpi Papouli, Cristina Naceur-Lombardelli, Anca Mera, Kayleigh Ougham, Andrew Tutt, Siker Kimbung, Ingrid Hedenfalk, Jun Zhan, Hongquan Zhang, Richard Buus, Mitch Dowsett, Tony Ng, Sarah Pinder, Peter J. Parker, Lars Holmberg, Cheryl Gillett, Anita Grigoriadis, Arnie Purushotham
Software Mentions: 3
Published: about 7 years ago

10.1038/srep18517

Integration of genomic, transcriptomic and proteomic data identifies two biologically distinct subtypes of invasive lobular breast cancer
Cited by: 134
Author(s): Magali Michaut, Suet-Feung Chin, Ian J. Majewski, Tesa Severson, Tycho Bismeijer, Leanne de Koning, Justine K. Peeters, Philip C. Schouten, Oscar M. Rueda, Astrid Bosma, Finbarr Tarrant, Yue Fan, Beilei He, Xue Zhou, Lorenza Mittempergher, Roelof J.C. Kluin, Jeroen Heijmans, Mireille H.J. Snel, Bernard Pereira, Andreas Schlicker, Elena Provenzano, H. Raza Ali, Alexander Gaber, Gillian O’Hurley, Sophie Lehn, Jettie J.F. Muris, Jelle Wesseling, Elaine W. Kay, Stephen‐John Sammut, Helen Bardwell, Aurélie Barbet, Floriane Bard, Caroline Lecerf, Darran P. O’Connor, Daniël J. Vis, Cyril H. Benes, Ultan McDermott, Mathew J. Garnett, Iris Simón, Karin Jirström, Thierry Dubois, Sabine C. Linn, William M. Gallagher, Lodewyk Wessels, Carlos Caldas, René Bernards
Software Mentions: 3
Published: almost 9 years ago

10.1186/s13058-016-0685-5

An integrated genomics analysis of epigenetic subtypes in human breast tumors links DNA methylation patterns to chromatin states in normal mammary cells
Cited by: 64
Author(s): Karolina Holm, Johan Staaf, Martin Lauss, Mattias Aine, David Lindgren, Pär‐Ola Bendahl, Johan Vallon‐Christersson, Rósa B. Barkardóttir, Mattias Höglund, Åke Borg, Göran Jönsson, Markus Ringnér
Software Mentions: 2
Published: over 8 years ago