Projects: cran: hsphase
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/hsphase
Phasing, Pedigree Reconstruction, Sire Imputation and
Recombination Events Identification of Half-sib Families Using
SNP Data
7 versions
Latest release: over 7 years ago
1 dependent package
237 downloads last month
Science Score: 83/100
Starting Score: 100 points
Bonuses:
-
+8
Academic maintainer emails
1 maintainers with academic email addresses
Penalties:
-
-15
No science keywords
No scientific terms found in keywords/classifiers -
-10
No science terms in description
No scientific terms found in description
Very Likely Science (83)
Papers Mentioning hsphase 7
10.1186/1471-2105-15-172
hsphase: an R package for pedigree reconstruction, detection of recombination events, phasing and imputation of half-sib family groupsCited by: 31
Author(s): Mohammad Ferdosi, Brian Kinghorn, J. H. J. van der Werf, Seung H. Lee, Cedric Gondro
Software Mentions: 5
Published: about 12 years ago
10.1093/bioinformatics/btaa499
AlphaFamImpute: high-accuracy imputation in full-sib families from genotype-by-sequencing dataCited by: 10
Author(s): Andrew Whalen, Gregor Gorjanc, John M. Hickey
Software Mentions: 4
Published: about 6 years ago
10.1371/journal.pone.0218407
Genome-wide SNP analysis of Japanese Thoroughbred racehorsesCited by: 14
Author(s): Jeffrey A. Fawcett, Fumio Sato, Takahiro Sakamoto, Watal M. Iwasaki, Teruaki Tozaki, Hideki Innan
Software Mentions: 2
Published: almost 7 years ago
10.1186/s12859-019-2662-3
‘apparent’: a simple and flexible R package for accurate SNP-based parentage analysis in the absence of guiding informationCited by: 7
Author(s): Arthur T. O. Melo, Iago Hale
Software Mentions: 2
Published: over 7 years ago
10.1186/s12711-015-0148-y
A new SNP-based vision of the genetics of sex determination in European sea bass (Dicentrarchus labrax)Cited by: 78
Author(s): Christos Palaiokostas, Michaël Bekaert, John B. Taggart, Karim Gharbi, Brendan McAndrew, Béatrice Chatain, David J. Penman, Marc Vandeputte
Software Mentions: 2
Published: almost 11 years ago
10.1186/s12711-016-0253-6
Study of the optimum haplotype length to build genomic relationship matricesCited by: 15
Author(s): Mohammad Ferdosi, John Henshall, Bruce Tier
Software Mentions: 1
Published: over 9 years ago
10.1186/1297-9686-46-11
Detection of recombination events, haplotype reconstruction and imputation of sires using half-sib SNP genotypesCited by: 13
Author(s): Mohammad Ferdosi, Brian Kinghorn, J. H. J. van der Werf, Cedric Gondro
Software Mentions: 1
Published: over 12 years ago