cran: gridExtra | Projects | Ecosyste.ms: Papers

10.1002/evl3.80

Lineages evolved under stronger sexual selection show superior ability to invade conspecific competitor populations
Cited by: 10
Author(s): Joanne L. Godwin, Lewis G. Spurgin, Łukasz Michalczyk, Oliver Y. Martin, Alyson J. Lumley, Tracey Chapman, Matthew J. G. Gage
Software Mentions: 6
Published: about 6 years ago

10.3389/fcell.2019.00141

Single Cell Imaging of Nuclear Architecture Changes
Cited by: 17
Author(s): Rikke Morrish, Michael Hermes, Jeremy Metz, Edwin M. Stone, Stefano Pagliara, Richard Chahwan, Francesca Palombo
Software Mentions: 6
Published: over 5 years ago

10.3389/fgene.2019.00447

Leveraging Fecal Bacterial Survey Data to Predict Colorectal Tumors
Cited by: 11
Author(s): Bangzhou Zhang, Shuaimei Xu, Wei Xu, Qiongyun Chen, Zhangran Chen, Changsheng Yan, Yanyun Fan, Huangkai Zhang, Qi Liu, Jie Yang, Jinfeng Yang, Chuanxing Xiao, Hui Xu, Jianlin Ren
Software Mentions: 6
Published: over 5 years ago

10.3389/fimmu.2020.583644

Fusobacterium nucleatum Extracellular Vesicles Modulate Gut Epithelial Cell Innate Immunity via FomA and TLR2
Cited by: 27
Author(s): Camille Martin-Gallausiaux, Antoine Malabirade, Janine Habier, Paul Wilmes
Software Mentions: 6
Published: almost 4 years ago

10.3389/fvets.2021.617900

Comparative Study of Free-Roaming Domestic Dog Management and Roaming Behavior Across Four Countries: Chad, Guatemala, Indonesia, and Uganda
Cited by: 18
Author(s): Charlotte Warembourg, Ewaldus Wera, Terence Odoch, Petrus Malo Bulu, Mónica Berger-González, Danilo Álvarez, Mahamat Fayiz Abakar, Filipe Maximiano Sousa, Laura Cunha Silva, Grace Alobo, Valentin Dingamnayal Bal, Alexis Leonel López Hernandez, Enos Madaye, Maria Satri Meo, Abakar Naminou, Pablo Roquel, Sonja Hartnack, Salome Dürr
Software Mentions: 6
Published: over 3 years ago

10.1098/rspb.2021.1269

Transgenerational non-genetic inheritance has fitness costs and benefits under recurring stress in the clonal duckweedSpirodela polyrhiza
Cited by: 10
Author(s): Meret Huber, Saskia Gablenz, Martin Höfer
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-018-23913-2

Analysis of HIV-1 envelope evolution suggests antibody-mediated selection of common epitopes among Chinese former plasma donors from a narrow-source outbreak
Cited by: 3
Author(s): Sophie Andrews, Yonghong Zhang, Tao Dong, Sarah Rowland‐Jones, Sunetra Gupta, Joakim Esbjörnsson
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-021-87643-8

Reaction lumping in metabolic networks for application with thermodynamic metabolic flux analysis
Cited by: 1
Author(s): Lea Seep, Zahra Razaghi-Moghadam, Zoran Nikoloski
Software Mentions: 6
Published: over 3 years ago

10.1128/mSystems.00003-19

16S rRNA/rRNA Gene Ratios and Cell Activity Staining Reveal Consistent Patterns of Microbial Activity in Plant-Associated Soil
Cited by: 39
Author(s): Alan W. Bowsher, Patrick J. Kearns, Ashley Shade
Software Mentions: 6
Published: over 5 years ago

10.7554/eLife.57347

Universal and taxon-specific trends in protein sequences as a function of age
Cited by: 17
Author(s): Jennifer E. James, Sara M. Willis, Paul Nelson, Catherine Weibel, Luke Kosinski, Joanna Masel
Software Mentions: 6
Published: almost 4 years ago

10.7554/eLife.07597

GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems
Cited by: 184
Author(s): Rubén Rellán‐Álvarez, Guillaume Lobet, Heike Lindner, Pierre-Luc Pradier, José Sebastián, Muh-Ching Yee, Yu Geng, Charlotte Trontin, Therese LaRue, Amanda Schrager‐Lavelle, Cara H. Haney, Rita Nieu, Julin Maloof, John P. Vogel, José R. Dinneny
Software Mentions: 6
Published: over 9 years ago

10.1186/s12868-021-00635-2

Early postnatal irradiation‐induced age‐dependent changes in adult mouse brain: MRI based characterization
Cited by: 5
Author(s): Bo Ren, Isaac Huen, Zi Jun Wu, Hong Wang, Meng Yun Duan, Ilonka Guenther, Kritika Prakash, Feng Ru Tang
Software Mentions: 5
Published: over 3 years ago

10.1186/s13104-017-2455-6

Gene expression differences between PAXgene and Tempus blood RNA tubes are highly reproducible between independent samples and biobanks
Cited by: 12
Author(s): Anne Heidi Skogholt, Einar Ryeng, Sten Even Erlandsen, Frank Skorpen, Svanhild Margrethe Arentz Schønberg, Pål Sætrom
Software Mentions: 5
Published: over 7 years ago

10.16910/jemr.13.1.2

Looking (for) patterns: Similarities and differences between infant and adult free scene-viewing patterns
Cited by: 0
Author(s): Daan R. van Renswoude, Maartje E. J. Raijmakers, Ingmar Visser
Software Mentions: 5
Published: over 4 years ago

10.3389/fvets.2019.00123

Age-Related Serum Biochemical Reference Intervals Established for Unweaned Calves and Piglets in the Post-weaning Period
Cited by: 42
Author(s): Kuai Yu, Francesca Canalías, David Solà-Oriol, Laura Arroyo, Raquel Pato, Yolanda Saco, M. Terré, Anna Bassols
Software Mentions: 5
Published: over 5 years ago

10.1007/s00436-020-06753-w

Sex interacts with age-dependent change in the abundance of lice-infesting Amur Falcons (Falco amurensis)
Cited by: 1
Author(s): Imre Sándor Piross, Manju Siliwal, R. Suresh Kumar, Péter Palatitz, Szabolcs Solt, Péter Borbáth, Nóra Vili, Nóra M. Magonyi, Zoltán Vas, Lajos Rózsa, Andrea Harnos, Péter Fehérvári
Software Mentions: 5
Published: over 4 years ago

10.3390/jcm9082452

Insight in miRNome of Long-Term Non-Progressors and Elite Controllers Exposes Potential RNAi Role in Restraining HIV-1 Infection
Cited by: 9
Author(s): Rubén Ayala-Suárez, Francisco Díez-Fuertes, Esther Calonge, Humberto Erick De La Torre Tarazona, M Gracia-Ruiz de Alda, Laura Capa, José Alcamı́
Software Mentions: 5
Published: over 4 years ago

10.1007/s00436-020-06634-2

Sex-dependent changes in the louse abundance of red-footed falcons (Falco vespertinus)
Cited by: 4
Author(s): Imre Sándor Piross, Szablocs Solt, Éva Horváth, László Kotymán, Péter Palatitz, Péter Bertók, Krisztián Szabó, Nóra Vili, Zoltán Vas, Lajos Rózsa, Andrea Harnos, Péter Fehérvári
Software Mentions: 5
Published: over 4 years ago

10.1186/s12859-021-04154-z

Tamock: simulation of habitat-specific benchmark data in metagenomics
Cited by: 0
Author(s): Samuel M. Gerner, Alexandra B. Graf, Thomas Rattei
Software Mentions: 5
Published: over 3 years ago

10.3389/fmolb.2021.621232

Six Metabolism Related mRNAs Predict the Prognosis of Patients With Hepatocellular Carcinoma
Cited by: 6
Author(s): Xiwen Wu, Tian Lan, Muqi Li, Junfeng Liu, Xukun Wu, Shunli Shen, Wei Chen, Baogang Peng
Software Mentions: 5
Published: over 3 years ago

10.1186/s12885-020-07689-1

Prognostic implications of alcohol dehydrogenases in hepatocellular carcinoma
Cited by: 25
Author(s): Xiangye Liu, Tingting Li, Delong Kong, Hua You, Fanyun Kong, Renxian Tang
Software Mentions: 5
Published: almost 4 years ago

10.1002/ece3.2592

Size differences of Arctic marine protists between two climate periods—using the paleoecological record to assess the importance of within‐species trait variation
Cited by: 12
Author(s): Erik Askov Mousing, Sofia Ribeiro, Chelsea Chisholm, Antoon Kuijpers, Matthias Moros, Marianne Ellegaard
Software Mentions: 5
Published: almost 8 years ago

10.3390/ijms21020468

Maternal Obesity Alters Placental Cell Cycle Regulators in the First Trimester of Human Pregnancy: New Insights for BRCA1
Cited by: 9
Author(s): Denise Hoch, Martina Bachbauer, Caroline Pöchlauer, Francisco Algaba-Chueca, Veronika Tandl, Boris Novakovic, Ana Megía, Martin Gauster, Richard Saffery, Andreas Glasner, Gernot Desoyé, Alejandro Majali-Martínez
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0246297

Rhabdomyolysis related to acute recreational drug toxicity—A Euro-DEN study
Cited by: 9
Author(s): W. James Waldman, Piotr Maciej Kabata, Alison Dines, David M. Wood, Chris Yates, Fridtjof Heyerdahl, Knut Erik Hovda, Isabelle Giraudon, Jacek Sein Anand
Software Mentions: 5
Published: over 3 years ago

10.1186/s13071-016-1484-7

Pilot longitudinal mosquito surveillance study in the Danube Delta Biosphere Reserve and the first reports of Anopheles algeriensis Theobald, 1903 and Aedes hungaricus Mihályi, 1955 for Romania
Cited by: 17
Author(s): Edina Török, Alexandru Tomazatos, Dániel Cadar, Cintia Horváth, Lujza Keresztes, Stéphanie Jansen, Norbert Becker, Achim Kaiser, Octavian Popescu, Jonas Schmidt‐Chanasit, Hanna Jöst, Renke Lühken
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pgen.1007289

Degenerate Pax2 and Senseless binding motifs improve detection of low-affinity sites required for enhancer specificity
Cited by: 14
Author(s): Arya Zandvakili, Ian K. Campbell, Lisa M. Gutzwiller, Matthew T. Weirauch, Brian Gebelein
Software Mentions: 5
Published: over 6 years ago

10.3389/fimmu.2021.722206

Gut Bacterial Characteristics of Patients With Type 2 Diabetes Mellitus and the Application Potential
Cited by: 35
Author(s): Yanyan Que, Man Cao, Jianquan He, Qiang Zhang, Qiongyun Chen, Changsheng Yan, Aiqiang Lin, Luxi Yang, Zezhen Wu, Dan Zhu, Fengwu Chen, Zhangran Chen, Chuanxing Xiao, Kaijian Hou, Bangzhou Zhang
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-020-70206-8

Remote, autonomous real-time monitoring of environmental DNA from commercial fish
Cited by: 28
Author(s): Brian Klitgaard Hansen, Marianne Jacobsen, Anne Lise Middelboe, Christina M. Preston, Roman Marin, Dorte Bekkevold, Steen Wilhelm Knudsen, Peter Rask Møller, Einar Eg Nielsen
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-020-73597-w

Pomegranate: 2D segmentation and 3D reconstruction for fission yeast and other radially symmetric cells
Cited by: 9
Author(s): Erod Keaton Baybay, Eric Esposito, Silke Hauf
Software Mentions: 5
Published: about 4 years ago

10.3758/s13414-020-02007-0

Oculomotor capture by search-irrelevant features in visual working memory: on the crucial role of target–distractor similarity
Cited by: 4
Author(s): Rebecca M. Foerster, Werner X. Schneider
Software Mentions: 5
Published: over 4 years ago

10.7717/peerj.2387

Functional, size and taxonomic diversity of fish along a depth gradient in the deep sea
Cited by: 33
Author(s): Beth L. Mindel, Francis Neat, Clive N. Trueman, Thomas J. Webb, Julia L. Blanchard
Software Mentions: 5
Published: about 8 years ago

10.1038/s41598-020-80829-6

Empirical evidence for concerted evolution in the 18S rDNA region of the planktonic diatom genus Chaetoceros
Cited by: 5
Author(s): Danièle De Luca, Wiebe H. C. F. Kooistra, Diana Sarno, Elio Biffali, Roberta Piredda
Software Mentions: 5
Published: almost 4 years ago

10.3389/fmicb.2020.00052

sraX: A Novel Comprehensive Resistome Analysis Tool
Cited by: 14
Author(s): Leonardo G. Panunzi
Software Mentions: 5
Published: almost 5 years ago

10.7554/eLife.59095

Constitutive activation of cellular immunity underlies the evolution of resistance to infection in Drosophila
Cited by: 17
Author(s): Alexandre B. Leitão, Ramesh Arunkumar, Jonathan P. Day, Emma M Geldman, Ismaël Morin-Poulard, Michèle Crozatier, Francis M. Jiggins
Software Mentions: 5
Published: almost 4 years ago

10.3389/fcell.2021.690542

Predicting Panel of Metabolism and Immune-Related Genes for the Prognosis of Human Ovarian Cancer
Cited by: 7
Author(s): Lingyun Zhang, Wenwen Sun, Weimin Ren, Jinguo Zhang, Guoxiong Xu
Software Mentions: 5
Published: over 3 years ago

10.1186/s12874-016-0229-9

Health Equity Assessment Toolkit (HEAT): software for exploring and comparing health inequalities in countries
Cited by: 64
Author(s): Ahmad Reza Hosseinpoor, Devaki Nambiar, Anne Schlotheuber, Daniel D. Reidpath, Zev Ross
Software Mentions: 5
Published: about 8 years ago

10.3389/fspor.2021.585870

Assessing the Accuracy of Popular Commercial Technologies That Measure Resting Heart Rate and Heart Rate Variability
Cited by: 30
Author(s): Jason D. Stone, Hana K. Ulman, Kaylee Tran, Andrew Thompson, Manuel D. Halter, Jad Ramadan, Mark Stephenson, Victor Finomore, Scott M. Galster, Ali R. Rezai, Joshua A. Hagen
Software Mentions: 5
Published: over 3 years ago

10.5414/NP301110

Molecular diagnostic testing of diffuse gliomas in the real-life setting: A practical approach
Cited by: 8
Author(s): Michał Bieńkowski, Adelheid Wöhrer, Patrizia Moser, Melitta Kitzwögerer, Gerda Ricken, Thomas Ströbel, Johannes A. Hainfellner
Software Mentions: 4
Published: over 6 years ago

10.1534/g3.117.042531

Genome-Wide Exome Analysis of Cmv5-Disparate Mouse Strains that Differ in Host Resistance to Murine Cytomegalovirus Infection
Cited by: 3
Author(s): Alyssa Gillespie, Heather Lee, Catherine Robertson, Maya Cabot, Michael G. Brown
Software Mentions: 4
Published: over 7 years ago

10.3389/fmolb.2021.690500

TRPV4 is a Prognostic Biomarker that Correlates with the Immunosuppressive Microenvironment and Chemoresistance of Anti-Cancer Drugs
Cited by: 14
Author(s): Kai Wang, Xingjun Feng, Lingzhi Zheng, Zeying Chai, Ji Hee Yu, Xinxin You, Xiaodan Li, Xiaodong Cheng
Software Mentions: 4
Published: over 3 years ago

10.1093/gigascience/giy140

NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform
Cited by: 79
Author(s): Szymon T. Calus, Umer Zeeshan Ijaz, Ameet J. Pinto
Software Mentions: 4
Published: about 6 years ago

10.1093/femsec/fiab049

Factors influencing the biodiversity of three microbial groups within and among islands of the Baltic Sea
Cited by: 5
Author(s): Anette Teittinen, Leena Virta, Mingjia Li, Jianjun Wang
Software Mentions: 4
Published: over 3 years ago

10.5334/gh.347

Health Education about Rheumatic Heart Disease: A Community-Based Cluster Randomized Trial
Cited by: 4
Author(s): Kaciane K.B. Oliveira, Bruno Ramos Nascimento, Andrea Beaton, Maria Carmo P. Nunes, José Luiz P. Silva, Lara C Rabelo, Márcia M. Barbosa, Carolina Soares Viana de Oliveira, Mariana D.O. Mata, Waydder Antônio A. Costa, Andréa Franco Pereira, Craig Sable, Antônio Luiz Pinho Ribeiro
Software Mentions: 4
Published: almost 5 years ago

10.3390/insects11060390

Ecological Drivers and Sex-Based Variation in Body Size and Shape in the Queensland Fruit Fly, Bactrocera tryoni (Diptera: Tephritidae)
Cited by: 3
Author(s): Yufei Zhou, Juanita Rodríguez, Nicole Fisher, Renee A. Catullo
Software Mentions: 4
Published: over 4 years ago

10.1002/ece3.4421

Sex-specific prey partitioning in breeding piscivorous birds examined via a novel, noninvasive approach
Cited by: 10
Author(s): Bettina Thalinger, Johannes Oehm, Christiane Zeisler, Julia Vorhauser, Michael Traugott
Software Mentions: 4
Published: over 6 years ago

10.1016/j.eclinm.2021.101101

Diagnostic performance of a colorimetric RT -LAMP for the identification of SARS-CoV-2: A multicenter prospective clinical evaluation in sub-Saharan Africa
Cited by: 26
Author(s): Marycelin Baba, Molalegne Bitew, Joseph Fokam, Eric Agola Lelo, A Ahidjo, Kominist Asmamaw, Grâce Beloumou, Wallace Bulimo, Emanuele Buratti, Collins Chenwi, Hailu Dadi, Pierlanfranco D’Agaro, Laura De Conti, Nadine Fainguem, Galadima Gadzama, Paolo Maiuri, Janet Majanja, Wadegu Meshack, Alexis Ndjolo, Céline Nguefeu Nkenfou, Bamidele Soji Oderinde, Silvanos Opanda, Ludovica Segat, Cristiana Stuani, Samwel L. Symekher, Désiré Takou, Kassahun Tesfaye, Gianluca Triolo, Keyru Tuki, Serena Zacchigna, Alessandro Marcello
Software Mentions: 4
Published: about 3 years ago

10.2196/jmir.6342

Methods for Evaluating Respondent Attrition in Web-Based Surveys
Cited by: 61
Author(s): Camille J. Hochheimer, Roy Sabo, Alex H. Krist, Teresa Day, John Cyrus, Steven H. Woolf
Software Mentions: 4
Published: about 8 years ago

10.1186/s12859-019-3201-y

Manhattan++: displaying genome-wide association summary statistics with multiple annotation layers
Cited by: 4
Author(s): Christopher Grace, Martin Farrall, Hugh Watkins, Anuj Goel
Software Mentions: 4
Published: almost 5 years ago

10.3390/cells9061523

Potential Prognostic Role of SPARC Methylation in Non-Small-Cell Lung Cancer
Cited by: 9
Author(s): Federico Pio Fabrizio, Angelo Sparaneo, Andrea Fontana, Tommaso Mazza, Paolo Graziano, Angela Pantalone, Paola Parente, Flavia Centra, Natalizia Orlando, Domenico Trombetta, Annamaria la Torre, Gian Maria Ferretti, Marco Taurchini, Concetta Martina Di Micco, Evaristo Maiello, Vito Michele Fazio, Antonio Rossi, Lucia Anna Muscarella
Software Mentions: 4
Published: over 4 years ago

10.1098/rsos.210391

Polar bears are inefficient predators of seabird eggs
Cited by: 10
Author(s): Patrick M. Jagielski, Cody J. Dey, H. Grant Gilchrist, Evan S. Richardson, Oliver P. Love, Christina A.D. Semeniuk
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0172423

Generalist dispersers promote germination of an alien fleshy-fruited tree invading natural grasslands
Cited by: 14
Author(s): Martín Raúl Amodeo, María Belén Vázquez, Sergio Martín Zalba
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-017-07975-2

Signs of innate immune activation and premature immunosenescence in psoriasis patients
Cited by: 30
Author(s): Liisi Šahmatova, Elena Sügis, Marina Šunina, Helen Hermann, Ele Prans, Maire Pihlap, Kristi Abram, Ana Rebane, Hedi Peterson, Pärt Peterson, Külli Kingo, Kai Kisand
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0201657

“In a tree by the brook, there’s a songbird who sings”: Woodlands in an agricultural matrix maintain functionality of a wintering bird community
Cited by: 5
Author(s): Biang La Nam Syiem, Varun R. Goswami, Divya Vasudev
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-018-33381-3

Spatiotemporal dynamics and risk factors for human Leptospirosis in Brazil
Cited by: 34
Author(s): Oswaldo Santos Baquero, Gustavo Machado
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-019-45237-5

A sensitive and simple targeted proteomics approach to quantify transcription factor and membrane proteins of the unfolded protein response pathway in glioblastoma cells
Cited by: 23
Author(s): Chi Nguyen, Sebastian Malchow, Stefan Reich, Sascha Steltgens, Konstantin V. Shuvaev, Stefan Loroch, Christin Lorenz, Albert Sickmann, Christiane B. Knobbe-Thomsen, Björn Tews, Jan Medenbach, Robert Ahrends
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0098552

Identification of Glyceraldehyde 3-Phosphate Dehydrogenase Sequence and Expression Profiles in Tree Shrew (Tupaia belangeri)
Cited by: 5
Author(s): Yu Zheng, Qihui Wang, Chenxia Yun, Yingjun Wang, Wanli W. Smith, Jing Leng
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0091783

From Cues to Signals: Evolution of Interspecific Communication via Aposematism and Mimicry in a Predator-Prey System
Cited by: 22
Author(s): Kenna D. S. Lehmann, Brian W. Goldman, Ian Dworkin, David M. Bryson, A. Wagner
Software Mentions: 4
Published: over 10 years ago

10.1038/s41598-020-69856-5

Intracellular and tissue specific expression of FTO protein in pig: changes with age, energy intake and metabolic status
Cited by: 6
Author(s): Karolina Ferenc, Tomaš Pilžys, Damian Garbicz, Michał Marcinkowski, Oleksandr Skorobogatov, Małgorzata Dylewska, Zdzisław Gajewski, Elżbieta Grzesiuk, R. Zabielski
Software Mentions: 4
Published: over 4 years ago

10.3390/pathogens9080637

Field Experience of Antibody Testing against Mycoplasma bovis in Adult Cows in Commercial Danish Dairy Cattle Herds
Cited by: 10
Author(s): Mette Bisgaard Petersen, Lars Haastrup Pedersen, Lone Møller Pedersen, Liza Rosenbaum Nielsen
Software Mentions: 4
Published: over 4 years ago

10.12688/wellcomeopenres.16164.2

The effectiveness of social bubbles as part of a Covid-19 lockdown exit strategy, a modelling study
Cited by: 28
Author(s): Trystan Leng, Connor White, Joe Hilton, Adam J. Kucharski, Lorenzo Pellis, Helena B. Stage, Nicholas Davies, Matthew James Keeling, Stefan Flasche
Software Mentions: 4
Published: over 3 years ago

10.1186/s13104-015-1665-z

Lipid levels in HIV-positive men receiving anti-retroviral therapy are not associated with copy number variation of reverse cholesterol transport pathway genes
Cited by: 0
Author(s): Rebecca Marino, Lawrence A. Kingsley, Shehnaz K. Hussain, Jay H. Bream, Sudhir Penogonda, Priya Duggal, Jeremy Martinson
Software Mentions: 4
Published: about 9 years ago

10.1186/s12866-018-1154-3

A microbiome case-control study of recurrent acute otitis media identified potentially protective bacterial genera
Cited by: 108
Author(s): Rachael Lappan, Kara Imbrogno, Chisha Sikazwe, Denise Anderson, D. Mok, Harvey Coates, Shyan Vijayasekaran, Paul Bumbak, Christopher C Blyth, Sarra E. Jamieson, Christopher Peacock
Software Mentions: 4
Published: almost 7 years ago

10.3390/antibiotics9110735

Pathogenic Escherichia coli Possess Elevated Growth Rates under Exposure to Sub-Inhibitory Concentrations of Azithromycin
Cited by: 4
Author(s): Tran Tuan-Anh, Ha Thanh Tuyen, Nguyen Ngoc Minh Chau, Nguyen Duc Toan, Tran Hanh Triet, Le Minh Triet, Nguyen Hoang Thu Trang, Nguyen Thi Nguyen To, Josefin Bartholdson Scott, Duy Pham Thanh, Hannah E. Clapham, Stephen Baker
Software Mentions: 4
Published: about 4 years ago

10.1186/s12864-020-07260-z

Temporal salt stress-induced transcriptome alterations and regulatory mechanisms revealed by PacBio long-reads RNA sequencing in Gossypium hirsutum
Cited by: 18
Author(s): Delong Wang, Xuke Lu, Xiugui Chen, Shuai Wang, Junjuan Wang, Lixue Guo, Zujun Yin, Quanjia Chen, Wuwei Ye
Software Mentions: 4
Published: almost 4 years ago

10.3390/ijms21093187

Season Affects Yield and Metabolic Profiles of Rice (Oryza sativa) under High Night Temperature Stress in the Field
Cited by: 18
Author(s): Stephanie Schaarschmidt, Lovely Mae F Lawas, Ulrike Glaubitz, Xia Li, Alexander Erban, Joachim Kopka, S. V. Krishna Jagadish, Dirk K. Hincha, Ellen Zuther
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0232970

Pooling individual participant data from randomized controlled trials: Exploring potential loss of information
Cited by: 2
Author(s): Lennard L. van Wanrooij, Marieke P. Hoevenaar‐Blom, Nicola Coley, Tiia Ngandu, Yannick Meiller, Juliette Guillemont, Anna Rosenberg, Cathrien Beishuizen, Eric P. Moll van Charante, Hilkka Soininen, Carol Brayne, Sandrine Andrieu, Miia Kivipelto, Edo Richard
Software Mentions: 3
Published: over 4 years ago

10.1186/s40659-019-0237-4

Chronic prostatitis alters the prostatic microenvironment and accelerates preneoplastic lesions in C57BL/6 mice
Cited by: 6
Author(s): Yong Gao, Lijuan Wei, Chenbang Wang, Yuanjie Huang, Weidong Li, Tianyu Li, Chao‐Hua Mo, Hua‐Li Qin, Xiaoge Zhong, Yun Wang, Aihua Tan, Zengnan Mo, Yonghua Jiang, Yanling Hu
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0202279

Organellar genome analysis reveals endosymbiotic gene transfers in tomato
Cited by: 13
Author(s): Hyoung Tae Kim, Je Min Lee
Software Mentions: 3
Published: about 6 years ago

10.1186/s12882-020-01828-3

The association between serum chloride levels and chronic kidney disease progression: a cohort study
Cited by: 13
Author(s): Minesh Khatri, Joshua P. Zitovsky, Dale Lee, Kamal Nayyar, Melissa Fazzari, Candace D. Grant
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0115907

High Reproducibility of Histological Characterization by Whole Virtual Slide Quantification; An Example Using Carotid Plaque Specimens
Cited by: 11
Author(s): Joyce E. P. Vrijenhoek, Bastiaan G. L. Nelissen, Evelyn Velema, Kristy Vons, Jean‐Paul P.M. de Vries, Marinus J.C. Eijkemans, Hester M. den Ruijter, Gert J. de Borst, Frans L. Moll, Gérard Pasterkamp
Software Mentions: 3
Published: almost 10 years ago

10.1083/jcb.201704102

Loss of E-cadherin provides tolerance to centrosome amplification in epithelial cancer cells
Cited by: 57
Author(s): Alexander D. Rhys, Pedro T. Monteiro, Christopher M. Smith, Malti Vaghela, Teresa Arnandis, Takuya Kato, Birgit Leitinger, Erik Sahai, Andrew D. McAinsh, Guillaume Charras, Susana A. Godinho
Software Mentions: 3
Published: about 7 years ago

10.1523/ENEURO.0510-20.2021

Cellular and Behavioral Characterization ofPcdh19Mutant Mice: subtle Molecular Changes, Increased Exploratory Behavior and an Impact of Social Environment
Cited by: 2
Author(s): Natalia Galindo-Riera, Sylvia Adriana Newbold, Monika Sledziowska, Cristina Llinares‐Benadero, Jessica Griffiths, Erik Mire, Isabel Martínez-Garay
Software Mentions: 3
Published: over 3 years ago

10.1186/s13054-020-03410-7

Peripheral blood transcriptomic sub-phenotypes of pediatric acute respiratory distress syndrome
Cited by: 16
Author(s): Nadir Yehya, Brian M. Varisco, Neal J. Thomas, Hector R. Wong, Jason D. Christie, Rui Feng
Software Mentions: 3
Published: almost 4 years ago

10.3389/fmicb.2020.574815

The Response of Estuarine Ammonia-Oxidizing Communities to Constant and Fluctuating Salinity Regimes
Cited by: 5
Author(s): João P. Santos, António G G Sousa, Hugo Leonardo Coelho Ribeiro, Catarina Magalhães
Software Mentions: 3
Published: almost 4 years ago

10.1016/j.dib.2019.104199

Data on tree height and diameter for Pinus kesiya in Zambia
Cited by: 0
Author(s): P. Ng’andwe, Donald Chungu, Arthur M. Yambayamba, Alice Chilambwe
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pbio.1002332

A Latex Metabolite Benefits Plant Fitness under Root Herbivore Attack
Cited by: 65
Author(s): Meret Huber, Janina Epping, Christian Schulze Gronover, Julia Fricke, Zohra Aziz, Théo Brillatz, Michael Swyers, Tobias G. Köllner, Heiko Vogel, Almuth Hammerbacher, Daniella Triebwasser-Freese, Christelle Robert, Koen J. F. Verhoeven, Veronica Preite, Jonathan Gershenzon, Matthias Erb
Software Mentions: 3
Published: almost 9 years ago

10.3389/fpls.2019.01102

Factors Affecting Targeted Sequencing of 353 Nuclear Genes From Herbarium Specimens Spanning the Diversity of Angiosperms
Cited by: 93
Author(s): Grace E. Brewer, James J. Clarkson, Olivier Maurin, Alexandre R. Zuntini, Vanessa Barber, Sidonie Bellot, Nicola Biggs, Robyn S. Cowan, Nina M. Davies, Steven Dodsworth, Sara L. Edwards, Wolf L. Eiserhardt, Niroshini Epitawalage, Sue Frisby, Aurélie Grall, Paul J. Kersey, Lisa Pokorny, Ilia J. Leitch, Félix Forest, William J. Baker
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-020-74863-7

Biomarker-estimated flavan-3-ol intake is associated with lower blood pressure in cross-sectional analysis in EPIC Norfolk
Cited by: 27
Author(s): Javier I. Ottaviani, Abigail Britten, Debora Lucarelli, Robert Luben, Angela A. Mulligan, Marleen Lentjes, Reedmond Y. Fong, Nicola Gray, Philip B. Grace, Deborah H. Mawson, Amy Tym, Antonia Wierzbicki, Nita G. Forouhi, Kay‐Tee Khaw, Hagen Schroeter, Gunter Georg Kuhnle
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pntd.0008144

Factors associated with quality of life in patients with Chagas disease: SaMi-Trop project
Cited by: 9
Author(s): Nayara Dornela Quintino, Éster Cerdeira Sabino, José Luiz Padilha da Silva, Antônio Luiz Pinho Ribeiro, Ariela Mota Ferreira, Gabriela Lemes Davi, Cláudia Di Lorenzo Oliveira, Clareci Silva Cardoso
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-018-20593-w

Genetic relatedness reveals total population size of white sharks in eastern Australia and New Zealand
Cited by: 85
Author(s): Richard Hillary, Mark V. Bravington, Toby A. Patterson, Peter M. Grewe, R. Bradford, Pierre Feutry, Rasanthi M. Gunasekera, Victor M. Peddemors, Jonathan M. Werry, Malcolm P. Francis, Clinton Duffy, Barry D. Bruce
Software Mentions: 3
Published: almost 7 years ago

10.3390/molecules25184141

Transcriptomic and Proteomic Analysis of Clear Cell Foci (CCF) in the Human Non-Cirrhotic Liver Identifies Several Differentially Expressed Genes and Proteins with Functions in Cancer Cell Biology and Glycogen Metabolism
Cited by: 2
Author(s): Christoph Metzendorf, Katharina Wineberger, Jenny Rausch, Antonio Cigliano, Kristin Peters, Baodong Sun, Daniela Mennerich, Thomas Kietzmann, Diego F. Calvisi, Frank Dombrowski, Silvia Ribback
Software Mentions: 3
Published: about 4 years ago

10.3390/antiox10091484

Aryl Hydrocarbon Receptor and Cysteine Redox Dynamics Underlie (Mal)adaptive Mechanisms to Chronic Intermittent Hypoxia in Kidney Cortex
Cited by: 6
Author(s): Maria João Correia, António B. Pimpão, Filipa Lopes‐Coelho, Catarina O. Sequeira, Nuno R. Coelho, Clara Gonçalves-Dias, Robert Barouki, Xavier Coumoul, Jacinta Serpa, Judit Morelló, Emília C. Monteiro, Sofia A. Pereira
Software Mentions: 3
Published: about 3 years ago

10.3390/biomedicines9080875

Involvement of Gut Microbiota in Schizophrenia and Treatment Resistance to Antipsychotics
Cited by: 18
Author(s): Mirko Manchia, A. Fontana, Concetta Panebianco, Pasquale Paribello, Carlo Arzedi, Eleonora Cossu, Mario Garzilli, Maria Antonietta Montis, Andrea Mura, Claudia Pisanu, Donatella Congiu, Massimiliano Copetti, Federica Pinna, Valerio Pazienza, Alessio Squassina, Bernardo Carpiniello
Software Mentions: 3
Published: over 3 years ago

10.3390/biomedicines8090311

Exploring the Role of Gut Microbiota in Major Depressive Disorder and in Treatment Resistance to Antidepressants
Cited by: 26
Author(s): Andrea Fontana, Mirko Manchia, Concetta Panebianco, Pasquale Paribello, Carlo Arzedi, Eleonora Cossu, Mario Garzilli, Maria Antonietta Montis, Andrea Mura, Claudia Pisanu, Donatella Congiu, Massimiliano Copetti, Federica Pinna, Bernardo Carpiniello, Alessio Squassina, Valerio Pazienza
Software Mentions: 3
Published: about 4 years ago

10.3389/fpls.2020.587528

Phenotypic Selection on Flower Color and Floral Display Size by Three Bee Species
Cited by: 12
Author(s): Johanne Brunet, Andrew J Flick, Austin A. Bauer
Software Mentions: 2
Published: almost 4 years ago

10.1007/s00428-020-02798-5

MAML2 rearrangement as a useful diagnostic marker discriminating between Warthin tumour and Warthin-like mucoepidermoid carcinoma
Cited by: 11
Author(s): Michał Bieńkowski, Michał Kunc, Mariola Iliszko, Alina Kuźniacka, Michał Studniarek, Wojciech Biernat
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-82286-1

Combined analysis of miR-200 family and its significance for breast cancer
Cited by: 19
Author(s): Andrea Fontana, Raffaela Barbano, Elisa Dama, Barbara Pasculli, Michelina Rendina, Maria Morritti, Valentina Melocchi, Marina Castelvetere, Vanna Maria Valori, Sara Ravaioli, Sara Bravaccini, Libero Ciuffreda, Paolo Graziano, Evaristo Maiello, Massimiliano Copetti, Vito Michele Fazio, Manel Esteller, Fabrizio Bianchi, Paola Parrella
Software Mentions: 2
Published: almost 4 years ago

10.3390/microorganisms9081720

Cross-Shore and Depth Zonations in Bacterial Diversity Are Linked to Age and Source of Dissolved Organic Matter across the Intertidal Area of a Sandy Beach
Cited by: 2
Author(s): Julius Degenhardt, Julian Merder, Benedikt Heyerhoff, Heike Simon, Bert Engelen, Hannelore Waska
Software Mentions: 2
Published: over 3 years ago

10.3389/fphar.2020.01232

Traceability of Pediatric Antibiotic Purchasing Pathways in Italy: A Nationwide Real-World Drug Utilization Analysis
Cited by: 2
Author(s): Janet Sultana, Gianluca Trifirò, Valentina Ientile, Andrea Fontana, Francesco Rossi, Annalisa Capuano, Carmen Ferrajolo
Software Mentions: 2
Published: over 4 years ago

10.1007/s10549-018-4864-1

Screening mammography: benefit of double reading by breast density
Cited by: 22
Author(s): My von Euler‐Chelpin, Martin Lillholm, George Napolitano, Ilse Vejborg, Mads Nielsen, Elsebeth Lynge
Software Mentions: 2
Published: over 6 years ago

10.1242/dev.173757

Multi-sample SPIM image acquisition, processing and analysis of vascular growth in zebrafish
Cited by: 37
Author(s): Stephan Daetwyler, Ulrik Günther, Carl D. Modes, Kyle Harrington, Jan Huisken
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12885-020-6643-8

MicroRNAs associated to single drug components of R-CHOP identifies diffuse large B-cell lymphoma patients with poor outcome and adds prognostic value to the international prognostic index
Cited by: 9
Author(s): Hanne Due, Rasmus Froberg Brøndum, Ken H. Young, Martin Bøgsted, Karen Dybkær
Software Mentions: 2
Published: over 4 years ago

10.1098/rsos.172212

Leishmania naiffi and Leishmania guyanensis reference genomes highlight genome structure and gene evolution in the Viannia subgenus
Cited by: 23
Author(s): Simone Coughlan, Alysha S. Taylor, Eoghan Feane, Mandy Sanders, Gabriele Schönian, James A. Cotton, Tim Downing
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0186290

Dynamic microbial populations along the Cuyahoga River
Cited by: 11
Author(s): Matthew Cannon, Joseph M. Craine, James Hester, Amanda Shalkhauser, E. Ricky Chan, Kyle Logue, Scott T. Small, David Serre
Software Mentions: 2
Published: about 7 years ago

10.3390/plants9101372

Molecular and Biochemical Differences in Leaf Explants and the Implication for Regeneration Ability in Rorippa aquatica (Brassicaceae)
Cited by: 2
Author(s): Rumi Amano, Risa Momoi, Emi Omata, Taiga Nakahara, Kaori Kaminoyama, Mikiko Kojima, Yumiko Takebayashi, Shuka Ikematsu, Yuki Okegawa, Tomoaki Sakamoto, Hiroyuki Kasahara, Hitoshi Sakakibara, Ken Motohashi, Seisuke Kimura
Software Mentions: 2
Published: about 4 years ago

10.1016/j.ijpara.2016.09.007

Fasciola hepatica demonstrates high levels of genetic diversity, a lack of population structure and high gene flow: possible implications for drug resistance
Cited by: 67
Author(s): Nicola J. Beesley, Diana Williams, Steve Paterson, Jane E. Hodgkinson
Software Mentions: 2
Published: almost 8 years ago

10.3389/fpls.2019.00271

Multiple Near-Isogenic Lines Targeting a QTL Hotspot of Drought Tolerance Showed Contrasting Performance Under Post-anthesis Water Stress
Cited by: 18
Author(s): Sultan Mia, Hui Liu, Xingyi Wang, Guijun Yan
Software Mentions: 2
Published: over 5 years ago

10.1038/srep43747

The genome of Leishmania adleri from a mammalian host highlights chromosome fission in Sauroleishmania
Cited by: 33
Author(s): Simone Coughlan, Peter O. Mulhair, Mandy Sanders, Gabriele Schönian, James A. Cotton, Tim Downing
Software Mentions: 2
Published: over 7 years ago

Projects: cran: gridExtra

Papers Mentioning gridExtra 298