cran: gplots | Projects | Ecosyste.ms: Papers

10.1186/s13073-019-0694-y

A KHDC3L mutation resulting in recurrent hydatidiform mole causes genome-wide DNA methylation loss in oocytes and persistent imprinting defects post-fertilisation
Cited by: 41
Author(s): Hannah Demond, Zahra Anvar, Bahia Namavar Jahromi, Ángela Sparago, Ankit Verma, Maryam Davari, Luciano Calzari, Silvia Russo, Mojgan Akbarzadeh‐Jahromi, David Gabriel Monk, Simon Andrews, Andrea Riccio, Gavin Kelsey
Software Mentions: 3
Published: almost 5 years ago

10.7554/eLife.47866

Elevating acetyl-CoA levels reduces aspects of brain aging
Cited by: 72
Author(s): António Currais, Ling Huang, Joshua Goldberg, Michael Petrascheck, Gamze Ates, António Pinto-Duarte, Maxim N. Shokhirev, David Schubert, Pamela Maher
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0233064

Transcriptome analysis of Catarina scallop (Argopecten ventricosus) juveniles treated with highly-diluted immunomodulatory compounds reveals activation of non-self-recognition system
Cited by: 9
Author(s): Jesús Antonio López‐Carvallo, José Manuel Mazón‐Suástegui, Miguel Ángel Hernández‐Oñate, Dariel Tovar‐Ramírez, Fernando Abasolo‐Pacheco, Rosa María Morelos‐Castro, Guadalupe Fabiola Arcos‐Ortega
Software Mentions: 3
Published: over 4 years ago

10.1093/gbe/evv144

Comparative Genomics of a Bacterivorous Green Alga Reveals Evolutionary Causalities and Consequences of Phago-Mixotrophic Mode of Nutrition
Cited by: 27
Author(s): John A. Burns, Amber Paasch, Apurva Narechania, Eun-Soo Kim
Software Mentions: 3
Published: over 9 years ago

10.1002/mbo3.494

wblE2 transcription factor in Streptomyces griseus S4‐7 plays an important role in plant protection
Cited by: 7
Author(s): Hyun Ji Cho, Young Chul Kwon, Da-Ran Kim, Gyeongjun Cho, Seong Won Hong, Dong-Won Bae, Youn‐Sig Kwak
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0101777

Rapid Phenotypic and Genomic Change in Response to Therapeutic Pressure in Prostate Cancer Inferred by High Content Analysis of Single Circulating Tumor Cells
Cited by: 123
Author(s): Angel E. Dago, Asya Stepansky, Anders Carlsson, Madelyn Luttgen, Jude Kendall, Timour Baslan, Anand Kolatkar, Michael Wigler, Kelly Bethel, Mitchell E. Gross, James Hicks, Peter Kühn
Software Mentions: 3
Published: over 10 years ago

10.1186/1471-2164-15-773

Maize protein phosphatase gene family: identification and molecular characterization
Cited by: 53
Author(s): Kaifa Wei, Si Pan
Software Mentions: 3
Published: almost 11 years ago

10.1186/s13148-020-00895-5

H3K27ac acetylome signatures reveal the epigenomic reorganization in remodeled non-failing human hearts
Cited by: 17
Author(s): Jiayi Pei, Magdaléna Harakaľová, Thomas A. Treibel, R Thomas Lumbers, Bastiaan J. Boukens, Igor R. Efimov, Jip T. van Dinter, Arantxa González, Begoña López, Hamid el Azzouzi, Noortje van den Dungen, Christian G.M. van Dijk, Merle M. Krebber, Hester M. den Ruijter, Gérard Pasterkamp, Dirk J. Duncker, Edward E. S. Nieuwenhuis, Roel de Weger, Manon M. H. Huibers, Aryan Vink, Jason H. Moore, James Moon, Marianne C. Verhaar, Georgios Kararigas, Michal Mokrý, Folkert W. Asselbergs, Caroline Cheng
Software Mentions: 3
Published: over 4 years ago

10.1242/bio.014308

Genome-wide ChIP-seq analysis of human TOP2B occupancy in MCF7 breast cancer epithelial cells
Cited by: 40
Author(s): Catriona Manville, Kayleigh A. Smith, Zbysław Sońdka, Holly Ashlene Rance, Simon Cockell, Ian G. Cowell, Ka Cheong Lee, Nicholas J. Morris, Kay Padget, Graham Jackson, Caroline A. Austin
Software Mentions: 3
Published: about 9 years ago

10.1186/s12864-020-6570-8

MicroRNA expression profile analysis in sperm reveals hsa-mir-191 as an auspicious omen of in vitro fertilization
Cited by: 37
Author(s): Hua Xu, Xin Wang, Zhikai Wang, Jianhui Li, Zhiming Xu, Maohua Miao, Guowu Chen, Xiang-Dong Lei, Jun Wu, Huijuan Shi, Ke Wang, Tiancheng Zhang, Xiaoxi Sun
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12864-021-07683-2

A comprehensive RNA-Seq-based gene expression atlas of the summer squash (Cucurbita pepo) provides insights into fruit morphology and ripening mechanisms
Cited by: 11
Author(s): Aliki Xanthopoulou, Javier Montero‐Pau, Belén Picó, Panagiotis Boumpas, Eleni Tsaliki, Harry S. Paris, Athanasios Tsaftaris, Apostolos Kalivas, Ιfigeneia Mellidou, Ioannis Ganopoulos
Software Mentions: 3
Published: over 3 years ago

10.1186/s13059-017-1251-x

Dynamic DNA methylation reconfiguration during seed development and germination
Cited by: 187
Author(s): Taiji Kawakatsu, Joseph R. Nery, Rosa Castanon, Joseph R. Ecker
Software Mentions: 3
Published: about 7 years ago

10.1007/s00784-021-03860-5

Gingival phenotype assessment methods and classifications revisited: a preclinical study
Cited by: 7
Author(s): Kai R. Fischer, Jasmin Büchel, Tiziano Testori, Giulio Rasperini, Thomas Attin, Patrick R. Schmidlin
Software Mentions: 3
Published: over 3 years ago

10.1186/s13059-014-0412-4

Non-targeted transcription factors motifs are a systemic component of ChIP-seq datasets
Cited by: 55
Author(s): Rebecca Worsley Hunt, Wyeth W. Wasserman
Software Mentions: 3
Published: over 10 years ago

10.1111/acel.12707

Overexpression of PGC-1α in aging muscle enhances a subset of young-like molecular patterns
Cited by: 50
Author(s): Sofia F. Garcia, Nadee Nissanka, Edson Assunção Mareco, Susana G. Rossi, Susana Peralta, Francisca Díaz, Richard L. Rotundo, Robson Francisco Carvalho, Carlos T. Moraes
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12864-017-3663-0

Transcriptome analysis of the two unrelated fungal β-lactam producers Acremonium chrysogenum and Penicillium chrysogenum: Velvet-regulated genes are major targets during conventional strain improvement programs
Cited by: 22
Author(s): Dominik Terfehr, Tim A. Dahlmann, Ulrich Kück
Software Mentions: 3
Published: over 7 years ago

10.1186/s12864-018-4510-7

Transcription start site profiling uncovers divergent transcription and enhancer-associated RNAs in Drosophila melanogaster
Cited by: 30
Author(s): Michael P. Meers, Karen Adelman, Robert J. Duronio, Brian D. Strahl, Daniel J. McKay, A. Gregory Matera
Software Mentions: 3
Published: almost 7 years ago

10.1136/bmj.k452

Maternal thyroid function and child educational attainment: prospective cohort study
Cited by: 30
Author(s): Scott M. Nelson, Caroline Haig, Alex McConnachie, Naveed Sattar, Susan M. Ring, George Davey Smith, Debbie A. Lawlor, Robert Lindsay
Software Mentions: 3
Published: almost 7 years ago

10.1038/s42003-020-01227-2

Nrf2 contributes to the weight gain of mice during space travel
Cited by: 25
Author(s): Takafumi Suzuki, Akira Uruno, Akane Yumoto, Keiko Taguchi, Mikiko Suzuki, Nobuhiko Harada, Rie Ryoke, Eriko Naganuma, Nanae Osanai, Aya Goto, Hiroko Suda, Ryan Browne, Akihito Otsuki, Fumiki Katsuoka, Michael Zorzi, Takahiro Yamazaki, Daisuke Saigusa, S. Koshiba, Takashi Nakamura, Satoshi Fukumoto, Hironobu Ikehata, Keizo Nishikawa, Norio Suzuki, Ikuo Hirano, Ritsuko Shimizu, Tetsuya Oishi, Hozumi Motohashi, Hirona Tsubouchi, Risa Okada, Takashi Kudo, Michihiko Shimomura, Thomas W. Kensler, Hiroyasu Mizuno, Masaki Shimizu, Satoru Takahashi, Dai Shiba, Masayuki Yamamoto
Software Mentions: 3
Published: about 4 years ago

10.1186/s12864-021-07426-3

Transcriptome analysis of the transdifferentiation of canine BMSCs into insulin producing cells
Cited by: 2
Author(s): Jinglu Wang, Pengxiu Dai, Tong Zou, Yangou Lv, Wen Zhao, Xinke Zhang, Yihua Zhang
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pgen.1005748

Genome-Wide Transcriptional Regulation Mediated by Biochemically Distinct SWI/SNF Complexes
Cited by: 91
Author(s): Jesse R. Raab, Samuel Resnick, Terry Magnuson
Software Mentions: 3
Published: almost 9 years ago

10.1007/s12253-015-9926-7

Exploring the Molecular Mechanism and Biomakers of Liver Cancer Based on Gene Expression Microarray
Cited by: 8
Author(s): Pengfei Liu, Wenhua Jiang, He Ren, Huilai Zhang, Jihui Hao
Software Mentions: 3
Published: over 9 years ago

10.1186/s13071-020-04035-z

Dafachronic acid and temperature regulate canonical dauer pathways during Nippostrongylus brasiliensis infectious larvae activation
Cited by: 10
Author(s): Katherine Omueti Ayoade, Faith R. Carranza, Woong Hee Cho, Zhu Wang, Steven A. Kliewer, David J. Mangelsdorf, Jonathan D. C. Stoltzfus
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0111297

Distinct Strains of Toxoplasma gondii Feature Divergent Transcriptomes Regardless of Developmental Stage
Cited by: 26
Author(s): Matthew McKnight Croken, Yanfen Ma, Lye Meng Markillie, Ron Taylor, Galya Orr, Louis M. Weiss, Kami Kim
Software Mentions: 3
Published: about 10 years ago

10.1099/mgen.0.000104

Modification of the Streptococcus mutans transcriptome by LrgAB and environmental stressors
Cited by: 16
Author(s): Kelly C. Rice, Matthew E. Turner, O’neshia V. Carney, Tongjun Gu, Sang‐Joon Ahn
Software Mentions: 3
Published: over 7 years ago

10.1016/j.csbj.2021.04.008

Simultaneous profiling of Arabidopsis thaliana and Vibrio vulnificus MO6-24/O transcriptomes by dual RNA-seq analysis
Cited by: 5
Author(s): Yongsoon Park, Jong‐Seok Park, Mi Kyung Lee, Sung‐Hee Jung, Seon‐Kyu Kim, Choong-Min Ryu
Software Mentions: 3
Published: almost 4 years ago

10.7554/eLife.11469

An experimentally validated network of nine haematopoietic transcription factors reveals mechanisms of cell state stability
Cited by: 55
Author(s): Judith Schütte, Huange Wang, Stella Antoniou, Andrew Jarratt, Nicola K. Wilson, Joey Riepsaame, Fernando J. Calero-Nieto, Victoria Moignard, Silvia Basilico, Sarah Kinston, Rebecca Hannah, Mun Chiang Chan, Sylvia Nürnberg, Willem H. Ouwehand, Nicola Bonzanni, Marella Ftr de Bruijn, Berthold Göttgens
Software Mentions: 3
Published: almost 9 years ago

10.3390/microorganisms9040760

Extended Evaluation of Viral Diversity in Lake Baikal through Metagenomics
Cited by: 10
Author(s): Tatyana V. Butina, Yu. S. Bukin, Ivan S. Petrushin, Alexey E. Tupikin, Мarsel R. Kabilov, С. И. Беликов
Software Mentions: 3
Published: over 3 years ago

10.1093/dnares/dsy044

A unique life-strategy of an endophytic yeast Rhodotorula mucilaginosa JGTA-S1—a comparative genomics viewpoint
Cited by: 24
Author(s): Diya Sen, Karnelia Paul, Chinmay Saha, G. N. Mukherjee, Mayurakshi Nag, Samrat Ghosh, A. K. Das, A. Seal, Sucheta Tripathy
Software Mentions: 3
Published: almost 6 years ago

10.3390/genes11080884

Transcriptome Profiling and Differential Gene Expression in Canine Microdissected Anagen and Telogen Hair Follicles and Interfollicular Epidermis
Cited by: 7
Author(s): Dominique J Wiener, Kátia R. Groch, Magdalena A. T. Brunner, Tosso Leeb, Vidhya Jagannathan, Monika Maria Welle
Software Mentions: 3
Published: over 4 years ago

10.3390/genes8110310

Gut Microbiome and Putative Resistome of Inca and Italian Nobility Mummies
Cited by: 18
Author(s): Tasha M. Santiago-Rodríguez, Gino Fornaciari, Stefania Luciani, Gary A. Toranzos, Isolina Marota, Valentina Giuffra, Raúl J. Cano
Software Mentions: 3
Published: about 7 years ago

10.3390/genes8100268

Low-Grade Dysplastic Nodules Revealed as the Tipping Point during Multistep Hepatocarcinogenesis by Dynamic Network Biomarkers
Cited by: 10
Author(s): Lina Lu, Zhenfei Jiang, Yulin Dai, Luonan Chen
Software Mentions: 3
Published: about 7 years ago

10.1534/g3.119.400037

Evolution of Antibiotic Synthesis Gene Clusters in the Streptomyces globisporus TFH56, Isolated from Tomato Flower
Cited by: 6
Author(s): Gyeongjun Cho, Youn‐Sig Kwak
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0213823

Natural and human-impacted diversity of bryophytes along an elevational gradient on an oceanic island (La Palma, Canarias)
Cited by: 4
Author(s): Raquel Hernández‐Hernández, Jürgen Kluge, Claudine Ah‐Peng, Juana María González‐Mancebo
Software Mentions: 3
Published: over 5 years ago

10.3390/microorganisms9040855

Use of an Alignment-Free Method for the Geographical Discrimination of GTPVs Based on the GPCR Sequences
Cited by: 0
Author(s): Tesfaye Rufael, Yang Liu, Melaku Sombo, Jacqueline Kasiiti Lichoti, Janchivdorj Erdenebaatar, Bazartseren Boldbaatar, Reingard Grabherr, Tirumala Bharani Kumar Settypalli, Francisco J. Berguido, Angelika Loitsch, Delesa Damena, Giovanni Cattoli, Adama Diallo, Charles Euloge Lamien
Software Mentions: 3
Published: over 3 years ago

10.1534/g3.118.200910

Sex-Specific Co-expression Networks and Sex-Biased Gene Expression in the Salmonid Brook Charr Salvelinus fontinalis
Cited by: 18
Author(s): Ben J. G. Sutherland, Jenni M. Prokkola, Céline Audet, Louis Bernatchez
Software Mentions: 3
Published: over 5 years ago

10.1099/mic.0.000097

Chlamydia psittaci comparative genomics reveals intraspecies variations in the putative outer membrane and type III secretion system genes
Cited by: 24
Author(s): Bernard J. Wolff, Shatavia S. Morrison, Denise Pesti, Satishkumar Ranganathan Ganakammal, Ganesh Srinivasamoorthy, Shankar Changayil, M. Ryan Weil, Duncan MacCannell, Lori A. Rowe, Michael Frace, Branson W. Ritchie, Deborah Dean, Jonas M. Winchell
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0119741

Multivariate and Phylogenetic Analyses Assessing the Response of Bacterial Mat Communities from an Ancient Oligotrophic Aquatic Ecosystem to Different Scenarios of Long-Term Environmental Disturbance
Cited by: 12
Author(s): Silvia Pajares, Valeria Souza, Luis E. Eguiarte
Software Mentions: 3
Published: over 9 years ago

10.1534/g3.117.040105

Extensive Copy Number Variation in Fermentation-Related Genes AmongSaccharomyces cerevisiaeWine Strains
Cited by: 46
Author(s): Jacob L. Steenwyk, Antonis Rokas
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pcbi.1003189

A Self-Directed Method for Cell-Type Identification and Separation of Gene Expression Microarrays
Cited by: 30
Author(s): Neta S. Zuckerman, Yair Noam, Andrea Goldsmith, Peter P. Lee
Software Mentions: 3
Published: over 11 years ago

10.1186/s12864-016-2906-9

An integrative genomics approach for identifying novel functional consequences of PBRM1 truncated mutations in clear cell renal cell carcinoma (ccRCC)
Cited by: 18
Author(s): Yuanyuan Wang, Xingyi Guo, Michael J. Bray, Zhiyong Ding, Zhongming Zhao
Software Mentions: 3
Published: over 8 years ago

10.1186/s12864-018-5207-7

Altered expression of K13 disrupts DNA replication and repair in Plasmodium falciparum
Cited by: 30
Author(s): Justin Gibbons, Katrina A. Button-Simons, Swamy Rakesh Adapa, Suzanne Li, Maxwell Pietsch, Min Zhang, Xiangyun Liao, John Adams, Michael T. Ferdig, Rays H. Y. Jiang
Software Mentions: 3
Published: almost 6 years ago

10.1128/mSphere.00017-18

Air-Dried Brown Seaweed, Ascophyllum nodosum , Alters the Rumen Microbiome in a Manner That Changes Rumen Fermentation Profiles and Lowers the Prevalence of Foodborne Pathogens
Cited by: 30
Author(s): Mi Zhou, Martin Hünerberg, Yanhong Chen, Tim Reuter, Tim A. McAllister, F. D. Evans, Alan T. Critchley, Le Luo Guan
Software Mentions: 3
Published: over 6 years ago

10.3389/fimmu.2021.698900

Association of Gut Microbiota and Metabolites With Disease Progression in Children With Biliary Atresia
Cited by: 12
Author(s): Wei Song, Li‐Ying Sun, Zhaoqiong Zhu, Lin Wei, Wei Qu, Zhi-Gui Zeng, Ying Liu, Haiming Zhang, Wei Guo
Software Mentions: 3
Published: about 3 years ago

10.3389/fvets.2021.666512

Tandem Mass Tag-Based Quantitative Proteomic Analysis of Chicken Bursa of Fabricius Infected With Reticuloendotheliosis Virus
Cited by: 3
Author(s): Dahan Yang, Xiaoping Lv, Shujun Zhang, Shangen Zheng
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-87479-2

Soil CO2 emission and soil attributes associated with the microbiota of a sugarcane area in southern Brazil
Cited by: 3
Author(s): Mara Regina Moitinho, Daniel De Bortoli Teixeira, Elton da Silva Bicalho, Alan Rodrigo Panosso, Antônio Sérgio Ferraudo, Gener Tadeu Pereira, Siu Mui Tsai, Beatriz Maria Ferrari Borges, Newton La Scala
Software Mentions: 3
Published: over 3 years ago

10.18632/aging.101578

High expression of the breast cancer susceptibility gene BRCA1 in long-lived termite kings
Cited by: 9
Author(s): Eisuke Tasaki, Yuki Mitaka, Tomonari Nozaki, Keiko Kobayashi, Kenji Matsuura, Yoshihito Iuchi
Software Mentions: 3
Published: about 6 years ago

10.3389/fimmu.2019.01098

Functional Phenotypic Diversity of Regulatory T Cells Remaining in Inflamed Skin
Cited by: 18
Author(s): Ryoyo Ikebuchi, Maika Fujimoto, Yasutaka Nakanishi, Hiromi Okuyama, Taiki Moriya, Yutaka Kusumoto, Michio Tomura
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0078613

Distinct Phyllosphere Bacterial Communities on Arabidopsis Wax Mutant Leaves
Cited by: 77
Author(s): Eva E. Reisberg, U. Hildebrandt, Markus Riederer, Ute Hentschel
Software Mentions: 3
Published: about 11 years ago

10.3389/fimmu.2017.00723

Unperturbed Cytotoxic Lymphocyte Phenotype and Function in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome Patients
Cited by: 15
Author(s): Jakob Theorell, Indrė Bilevičiūtė-Ljungar, Bianca Tesi, Heinrich Schlums, Mette Sophie Johnsgaard, Babak Asadi-Azarbaijani, Elin Bolle Strand, Yenan T. Bryceson
Software Mentions: 3
Published: over 7 years ago

10.3389/fimmu.2018.01223

Autophagy Impairment Is Associated With Increased Inflammasome Activation and Reversal Reaction Development in Multibacillary Leprosy
Cited by: 14
Author(s): Mayara Garcia de Mattos Barbosa, Bruno Jorge de Andrade Silva, Tayná Quintella Assis, Rhana Berto da Silva Prata, Helen Ferreira, Priscila Ribeiro Andrade, Jéssica Araújo da Paixão de Oliveira, Gilberto Marcelo Sperandio da Silva, José Augusto da Costa Nery, Euzenir Nunes Sarno, Roberta Olmo Pinheiro
Software Mentions: 3
Published: over 6 years ago

10.18632/aging.203451

Intravascular emboli relates to immunosuppressive tumor microenvironment and predicts prognosis in stage III colorectal cancer
Cited by: 1
Author(s): Xiangping Song, Di Xie, Fengbo Tan, Yuan Zhou, Yuqiang Li, Zhongyi Zhou, Qian Pei, Haiping Pei
Software Mentions: 3
Published: about 3 years ago

10.3389/fpsyt.2021.632519

The Impact of COVID-19 Pandemic and Lockdown on Alcohol Consumption: A Perspective From Hair Analysis
Cited by: 9
Author(s): Eugenio Alladio, Lia Visintin, Tonia Lombardo, Roberto Testi, Alberto Salomone, Marco Vincenti
Software Mentions: 3
Published: over 3 years ago

10.1099/mgen.0.000154

Comparative transcriptomics of Aspergillus fumigatus strains upon exposure to human airway epithelial cells
Cited by: 16
Author(s): Tonya Watkins, Hong Liu, Matthew Chung, Tracy H. Hazen, Julie C. Dunning Hotopp, Scott G. Filler, Vincent M. Bruno
Software Mentions: 3
Published: almost 7 years ago

10.3390/microorganisms8070981

Comparison of Rumen Microbiota and Serum Biochemical Indices in White Cashmere Goats Fed Ensiled or Sun-Dried Mulberry Leaves
Cited by: 15
Author(s): Yaoyue Wang, Qingmiao Shen, Shu Zhong, Yulin Chen, Yuxin Yang
Software Mentions: 3
Published: over 4 years ago

10.3389/fimmu.2015.00030

Distinct Transcriptomic Features are Associated with Transitional and Mature B-Cell Populations in the Mouse Spleen
Cited by: 35
Author(s): Eden Kleiman, Daria Salyakina, Magali de Heusch, Kristen L. Hoek, Joan M. Llanes, Iris Castro, Jacqueline A. Wright, Emily Clark, Derek M. Dykxhoorn, Enrico Capobianco, Akihiro Takeda, Jean‐Christophe Renauld, Wasif N. Khan
Software Mentions: 3
Published: almost 10 years ago

10.1186/s12864-019-5460-4

RNA-sequencing analysis of shell gland shows differences in gene expression profile at two time-points of eggshell formation in laying chickens
Cited by: 22
Author(s): Samiullah Khan, Shu‐Biao Wu, Juliet R. Roberts
Software Mentions: 3
Published: almost 6 years ago

10.3389/fpls.2020.01028

Bacterial Diversity and Interaction Networks of Agave lechuguilla Rhizosphere Differ Significantly From Bulk Soil in the Oligotrophic Basin of Cuatro Cienegas
Cited by: 19
Author(s): Nguyen E. López-Lozano, Andrea Echeverría Molinar, Elizabeth Alejandra Ortiz Durán, Maribel Hernández-Rosales, Valeria Souza
Software Mentions: 3
Published: over 4 years ago

10.3389/fimmu.2018.03106

Expression of the Plasma Cell Transcriptional Regulator Blimp-1 by Dark Zone Germinal Center B Cells During Periods of Proliferation
Cited by: 31
Author(s): Daniel Radtke, Oliver Bannard
Software Mentions: 3
Published: almost 6 years ago

10.3389/fimmu.2019.01177

Differential Pathogenic Th17 Profile in Mesenteric Lymph Nodes of Crohn's Disease and Ulcerative Colitis Patients
Cited by: 34
Author(s): Marwa Bsat, Laurence Chapuy, Manuel Rubio, Ramsès Wassef, Carole Richard, Frank Schwenter, Rasmy Loungnarath, Geneviève Soucy, Heena Mehta, Marika Sarfati
Software Mentions: 3
Published: over 5 years ago

10.1007/s00253-019-09701-6

Uncovering carbohydrate metabolism through a genotype-phenotype association study of 56 lactic acid bacteria genomes
Cited by: 52
Author(s): G. Buron-Moles, Anna Chailyan, Igor Dolejš, Jochen Förster, Marta Hanna Mikš
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2020.00105

ATR-FTIR Microspectroscopy Brings a Novel Insight Into the Study of Cell Wall Chemistry at the Cellular Level
Cited by: 14
Author(s): Clément Cuello, Paul J. Marchand, Françoise Laurans, Camille Grand-Perret, Véronique Laine-Prade, Gilles Pilate, Annabelle Déjardin
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0161967

CYR61 and TAZ Upregulation and Focal Epithelial to Mesenchymal Transition May Be Early Predictors of Barrett’s Esophagus Malignant Progression
Cited by: 6
Author(s): Joana Cardoso, Marta Mesquita, António Dias Pereira, Mónica Bettencourt-Dias, Paula Chaves, José B. Pereira-Leal
Software Mentions: 3
Published: about 8 years ago

10.3389/fpls.2017.00148

Comparative Genomics Integrated with Association Analysis Identifies Candidate Effector Genes Corresponding to Lr20 in Phenotype-Paired Puccinia triticina Isolates from Australia
Cited by: 28
Author(s): Jing Qin Wu, Sharadha Sakthikumar, Chongmei Dong, Peng Zhang, Christina A. Cuomo, Robert Park
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-020-80824-x

A new rat model of creatine transporter deficiency reveals behavioral disorder and altered brain metabolism
Cited by: 14
Author(s): Lara Durán-Trío, Gabriella Fernandes-Pires, Dunja Simicic, Jocelyn Grosse, Clothilde Roux-Petronelli, Stephen J. Bruce, Pierre‐Alain Binz, Carmen Sandi, Cristina Cudalbu, Olivier Braissant
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12870-015-0555-9

Microspore culture reveals complex meiotic behaviour in a trigenomic Brassica hybrid
Cited by: 20
Author(s): Annaliese S. Mason, Junko Takahira, Chhaya Atri, Birgit Samans, Alice Hayward, Wallace Cowling, Jacqueline Batley, Matthew N. Nelson
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0117439

Effects of the Diet on the Microbiota of the Red Palm Weevil (Coleoptera: Dryophthoridae)
Cited by: 65
Author(s): Matteo Montagna, Bessem Chouaia, Giuseppe Mazza, Erica M. Prosdocimi, Elena Crotti, Valeria Mereghetti, Violetta Vacchini, Annamaria Giorgi, Alessio De Biase, S. Longo, Rita Cervo, G.C. Lozzia, Alberto Alma, Claudio Bandi, Daniele Daffonchio
Software Mentions: 3
Published: almost 10 years ago

10.3389/fpls.2016.02064

Cowpea Nodules Harbor Non-rhizobial Bacterial Communities that Are Shaped by Soil Type Rather than Plant Genotype
Cited by: 76
Author(s): Jakson Leite, Doreen Fischer, Luc Felicianus Marie Rouws, Paulo Ivan Fernandes‐Júnior, Andreas Hofmann, Susanne Kublik, Michael Schloter, Gustavo Ribeiro Xavier, Viviane Radl
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pone.0082319

Testing the Reproducibility of Multiple Displacement Amplification on Genomes of Clonal Endosymbiont Populations
Cited by: 21
Author(s): Kirsten Ellegaard, Lisa Klasson, Siv G. E. Andersson
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pone.0172521

Chronically dysregulated NOTCH1 interactome in the dentate gyrus after traumatic brain injury
Cited by: 16
Author(s): Noora Puhakka, Anna Bot, Niina Vuokila, Konrad J. Dębski, Katarzyna Łukasiuk, Asla Pitkänen
Software Mentions: 3
Published: over 7 years ago

10.3389/fpls.2018.00968

QTL Mapping and Validation of Adult Plant Resistance to Stripe Rust in Chinese Wheat Landrace Humai 15
Cited by: 38
Author(s): Fengping Yuan, Qingdong Zeng, Jianhui Wu, Qilin Wang, Zujun Yang, Bang-Ping Liang, Xinhong Chen
Software Mentions: 3
Published: over 6 years ago

10.1186/s12870-021-02919-5

Superoxide dismutase (SOD) as a selection criterion for triticale grain yield under drought stress: a comprehensive study on genomics and expression profiling, bioinformatics, heritability, and phenotypic variability
Cited by: 39
Author(s): Armin Saed-Moucheshi, Fatemeh Sohrabi, Elham Fasihfar, Fatemeh Baniasadi, Mehrnaz Riasat, Ali-Akbar Mozafari
Software Mentions: 3
Published: over 3 years ago

10.3389/fpls.2017.02039

Arbuscular Mycorrhizal Fungus Enhances Lateral Root Formation in Poncirus trifoliata (L.) as Revealed by RNA-Seq Analysis
Cited by: 31
Author(s): Weili Chen, Juan Li, Honghui Zhu, Pengyang Xu, Jiezhong Chen, Qing Yao
Software Mentions: 3
Published: almost 7 years ago

10.3389/fmicb.2018.01763

Comprehensive Insights Into Composition, Metabolic Potentials, and Interactions Among Archaeal, Bacterial, and Viral Assemblages in Meromictic Lake Shunet in Siberia
Cited by: 11
Author(s): Yuting Wu, Cheng‐Yu Yang, Pei‐Wen Chiang, Chwan-Lu Tseng, Hsiu‐Hui Chiu, Isaam Saeed, Bayanmunkh Baatar, D. Yu. Rogozin, Saman K. Halgamuge, А. Г. Дегерменджи, Sen‐Lin Tang
Software Mentions: 3
Published: over 6 years ago

10.3389/fpls.2017.01331

A Novel Multivariate Approach to Phenotyping and Association Mapping of Multi-Locus Gametophytic Self-Incompatibility Reveals S, Z, and Other Loci in a Perennial Ryegrass (Poaceae) Population
Cited by: 20
Author(s): Daniel Thorogood, Steven Yates, Chloé Manzanares, Leif Skøt, Matthew J. Hegarty, Tina Blackmore, Susanne Barth, Bruno Studer
Software Mentions: 3
Published: over 7 years ago

10.1186/1471-2229-13-14

Transcriptional programming during cell wall maturation in the expanding Arabidopsis stem
Cited by: 34
Author(s): Hardy Hall, Brian E. Ellis
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0171078

Metabolite profiling of the carnivorous pitcher plants Darlingtonia and Sarracenia
Cited by: 16
Author(s): Hannu Hotti, Peddinti Gopalacharyulu, Tuulikki Seppänen‐Laakso, Heiko Rischer
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12864-021-07847-0

Global analysis of protein lysine 2-hydroxyisobutyrylation (Khib) profiles in Chinese herb rhubarb (Dahuang)
Cited by: 5
Author(s): Tao Qi, Jinping Li, Hong Wang, Xiaofan Han, Junrong Li, Jinzhe Du
Software Mentions: 3
Published: over 3 years ago

10.1186/s12864-015-1450-3

The UBC-40 Urothelial Bladder Cancer cell line index: a genomic resource for functional studies
Cited by: 80
Author(s): Julie Earl, Daniel Rico, Enrique Carrillo de Santa Pau, Benjamín Rodríguez-Santiago, Marinela Méndez-Pertuz, Herbert Auer, Gonzalo Vázquez Gómez, H. Barton Grossman, David G. Pisano, Wolfgang A. Schulz, Luís A. Pérez-Jurado, Alfredo Carrato, Dan Theodorescu, Stephen J. Chanock, Alfonso Valencia, Francisco X. Real
Software Mentions: 3
Published: over 9 years ago

10.3389/fpls.2016.01229

Differential Network Analysis Reveals Evolutionary Complexity in Secondary Metabolism of Rauvolfia serpentina over Catharanthus roseus
Cited by: 13
Author(s): Shivalika Pathania, Ganesh Bagler, Paramvir Singh Ahuja
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pntd.0007397

Interplay between proinflammatory cytokines, miRNA, and tissue lesions in Anisakis-infected Sprague-Dawley rats
Cited by: 21
Author(s): Jerko Hrabar, Željka Trumbić, Ivana Bočina, Ivana Bušelić, Anamarija Vrbatović, Ivona Mladineo
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.101871

Anesthesia and surgery induce cognitive dysfunction in elderly male mice: the role of gut microbiota
Cited by: 46
Author(s): Gaofeng Zhan, Hua Duan, Niannian Huang, Yue Wang, Shan Li, Zhiqiang Zhou, Ning Yang, Ruiwei Jiang, Bin Zhu, Ling Yang, Yu Fan, Hui Xu, Chun Yang, Ailin Luo
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-019-5984-7

An insight into the sialome, mialome and virome of the horn fly, Haematobia irritans
Cited by: 14
Author(s): José M. C. Ribeiro, Humberto Julio Debat, Mariana Boiani, X. Ures, Sérgio Paulo Dejato da Rocha, Martı́n Breijo
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0054379

Characterization of the Vaginal Micro- and Mycobiome in Asymptomatic Reproductive-Age Estonian Women
Cited by: 199
Author(s): Tiina Drell, Triin Lillsaar, Lea Tummeleht, Jaak Simm, Anu Aaspõllu, Edda Väin, Ivo Saarma, Andres Salumets, Gilbert Donders, Madis Metsis
Software Mentions: 3
Published: almost 12 years ago

10.1186/s12870-020-02384-6

Identification of polycomb repressive complex 1 and 2 core components in hexaploid bread wheat
Cited by: 13
Author(s): Beáta Strejčková, Radim Čegan, Aleš Pečinka, Zbyněk Milec, Jan Šafář
Software Mentions: 3
Published: about 4 years ago

10.1186/s12870-018-1373-7

Comparative root transcriptome of wild Arachis reveals NBS-LRR genes related to nematode resistance
Cited by: 24
Author(s): Ana Paula Zotta Mota, Bruna Vidigal, Étienne Danchin, Roberto Coiti Togawa, Soraya C. M. Leal‐Bertioli, David J. Bertioli, Ana Cláudia Guerra Araújo, Ana Cristina Miranda Brasileiro, P. M. Guimarães
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-76688-w

Identification of immune-related genes as prognostic factors in bladder cancer
Cited by: 12
Author(s): Jie Zhu, Han Wang, Ting Ma, Yan He, Meng‐Ru Shen, Wei Song, Jingjing Wang, Jianping Shi, Mengyao Wu, Chao Liu, Wenjie Wang, Yongzhen Huang
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pcbi.1004553

Integrative Genomics-Based Discovery of Novel Regulators of the Innate Antiviral Response
Cited by: 18
Author(s): Robin van der Lee, Feng Qian, Martijn A. Langereis, Rob ter Horst, Radek Szklarczyk, Mihai G. Netea, Arno C. Andeweg, Frank J. M. van Kuppeveld, Martijn A. Huynen
Software Mentions: 3
Published: about 9 years ago

10.3389/fmicb.2018.02836

Environmental Drivers of Free-Living vs. Particle-Attached Bacterial Community Composition in the Mauritania Upwelling System
Cited by: 45
Author(s): Jennifer Bachmann, Tabea Heimbach, Christiane Hassenrück, Gérmán A. Kopprio, Morten Hvitfeldt Iversen, Hans Peter Grossart, Astrid Gärdes
Software Mentions: 3
Published: about 6 years ago

10.1128/mSystems.00075-16

Zonal Soil Type Determines Soil Microbial Responses to Maize Cropping and Fertilization
Cited by: 27
Author(s): Mengxin Zhao, Bo Sun, Linwei Wu, Qun Gao, Wang Feng, Chongqing Wen, Mengmeng Wang, Yuting Liang, Lauren Hale, Jizhong Zhou, Yunfeng Yang
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-020-75207-1

Curing piglets from diarrhea and preparation of a healthy microbiome with Bacillus treatment for industrial animal breeding
Cited by: 24
Author(s): Shousong Yue, Zhentian Li, Fangfang Hu, Jean-François Picimbon
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-020-75438-2

Gene expression of the heat stress response in bovine peripheral white blood cells and milk somatic cells in vivo
Cited by: 30
Author(s): Josie B. Garner, Amanda J. Chamberlain, Christy Vander Jagt, Thuy Thi Thu Nguyen, Brett Mason, L. C. Marett, Brian J Leury, William J. Wales, Ben J. Hayes
Software Mentions: 3
Published: about 4 years ago

10.1186/s12864-018-5241-5

The impact of genome evolution on the allotetraploid Nicotiana rustica – an intriguing story of enhanced alkaloid production
Cited by: 22
Author(s): Nicolas Sierro, James N. D. Battey, Lucien Bovet, Verena Liedschulte, Sonia Ouadi, JH Thomas, Hervé Broye, Hélène Laparra, Aline Vuarnoz, Gerhard K. Lang, Simon Goepfert, Manuel C. Peitsch, Nikolai V. Ivanov
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0118201

A Combined Gene Signature of Hypoxia and Notch Pathway in Human Glioblastoma and Its Prognostic Relevance
Cited by: 45
Author(s): Khushboo Irshad, Saroj Kant Mohapatra, Chitrangda Srivastava, Harshit Garg, Seema Mishra, Bhawana Dikshit, Chitra Sarkar, Deepak Gupta, P. Sarat Chandra, Parthaprasad Chattopadhyay, Subrata Sinha, Kunzang Chosdol
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0217431

Comparison of bacterial community structure and potential functions in hypoxic and non-hypoxic zones of the Changjiang Estuary
Cited by: 27
Author(s): Dongmei Wu, Qiu-Ping Dai, Xuezhu Liu, Yingping Fan, Jianxin Wang
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2017.00882

Metabolome Dynamics of Smutted Sugarcane Reveals Mechanisms Involved in Disease Progression and Whip Emission
Cited by: 21
Author(s): Patrícia Dayane Carvalho Schaker, Leila Priscila Peters, Thaís Regiani Cataldi, Carlos Alberto Labate, Camila Caldana, Cláudia Barros Monteiro-Vitorello
Software Mentions: 3
Published: over 7 years ago

10.3389/fpls.2019.01642

Identification of Traits Contributing to High and Stable Yields in Different Soybean Varieties Across Three Chinese Latitudes
Cited by: 32
Author(s): Minmin Li, Ying Liu, Wang Chun-sheng, Xue Yang, Dongmei Li, Xiaoming Zhang, Chongjing Xu, Zhang Yan, Wenbin Li, Lin Zhao
Software Mentions: 3
Published: almost 5 years ago

10.1186/1471-2164-14-540

Solanum torvum responses to the root-knot nematode Meloidogyne incognita
Cited by: 38
Author(s): Paolo Bagnaresi, T. Sala, Tiziana Irdani, Cristina Scotto, Antonella Lamontanara, Massimiliano Beretta, Giuseppe Leonardo Rotino, S. Sestili, Luigi Cattivelli, E. Sabatini
Software Mentions: 3
Published: over 11 years ago

10.3389/fmicb.2018.01635

New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes
Cited by: 49
Author(s): Marie E. Kroeger, Tom O. Delmont, A. Murat Eren, Kyle Meyer, Jiarong Guo, Kiran Yasmin Khan, Jorge L. Mazza Rodrigues, Brendan J. M. Bohannan, Susannah G. Tringe, Clóvis Daniel Borges, James M. Tiedje, Siu Mui Tsai, Klaus Nüsslein
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-72828-4

Pax6 modulates intra-retinal axon guidance and fasciculation of retinal ganglion cells during retinogenesis
Cited by: 14
Author(s): Soundararajan Lalitha, Budhaditya Basu, Surya Suresh, Vadakkath Meera, Paul Ann Riya, Surendran Parvathy, Ani V. Das, Krishnankutty C. Sivakumar, Shijulal Nelson-Sathi, Jackson James
Software Mentions: 3
Published: about 4 years ago

Projects: cran: gplots

Papers Mentioning gplots 2,122