cran: gplots | Projects | Ecosyste.ms: Papers

10.1038/s41598-020-72311-0

The phosphoproteomic responses of duck (Cairna moschata) to classical/novel duck reovirus infections in the spleen tissue
Cited by: 5
Author(s): Tao Yun, Jionggang Hua, Weicheng Ye, Na Zheng, Liu Chen, Cun Zhang
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-71967-y

Unique repertoire of anti-carbohydrate antibodies in individual human serum
Cited by: 13
Author(s): Ralph N D Luetscher, Tanya R. McKitrick, Chao Gao, Akul Y. Mehta, Alyssa M McQuillan, Robert Kardish, Kayluz Frias Boligan, Xuezheng Song, Lenette L. Lu, Jamie Heimburg-Molinaro, Stephan von Gunten, Galit Alter, Richard D. Cummings
Software Mentions: 1
Published: almost 6 years ago

10.1111/jcmm.12819

Micro <scp>RNA</scp> expression profile of human periodontal ligament cells under the influence of Porphyromonas gingivalis <scp>LPS</scp>
Cited by: 37
Author(s): Anqing Du, Sen Zhao, Lingyun Wan, TianTao Liu, Zaoxia Peng, Ziyu Zhou, Zhengyu Liao, Huan Fang
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0227575

The interoceptive hippocampus: Mouse brain endocrine receptor expression highlights a dentate gyrus (DG)–cornu ammonis (CA) challenge–sufficiency axis
Cited by: 12
Author(s): Richard Lathe, Sheena Singadia, Crispin Y. Jordan, Gernot Riedel
Software Mentions: 1
Published: over 6 years ago

10.15252/msb.20145857

Systems‐level quantification of division timing reveals a common genetic architecture controlling asynchrony and fate asymmetry
Cited by: 27
Author(s): Vincy Wing Sze Ho, Ming Kin Wong, Xiaopeng An, Daogang Guan, Jiaofang Shao, Hon Chun Kaoru Ng, Xiaoliang Ren, Kan He, Jinyue Liao, Y U W Ang, Long Chen, Xiaotai Huang, Bin Yan, Yiji Xia, Leanne Lai Hang Chan, King Lau Chow, Hong Yan, Zhongying Zhao
Software Mentions: 1
Published: over 11 years ago

10.1186/s12870-017-1183-3

Transcriptomic analysis of wound xylem formation in Pinus canariensis
Cited by: 17
Author(s): Víctor Chano, Carmen Collada, Álvaro Soto
Software Mentions: 1
Published: almost 9 years ago

10.3389/fgene.2020.00873

Dissecting the Molecular Function of Triticum aestivum STI Family Members Under Heat Stress
Cited by: 10
Author(s): Shaloo Meena, Sohini Deb, Harsha Samtani, Paramjit Khurana
Software Mentions: 1
Published: about 6 years ago

10.1093/mp/ssu109

Age-Triggered and Dark-Induced Leaf Senescence Require the bHLH Transcription Factors PIF3, 4, and 5
Cited by: 170
Author(s): Yi Song, Chuangwei Yang, Shan Gao, Wei Zhang, Lin Liu, Kálmán Benke
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12866-017-1047-x

Insights into the Geobacillus stearothermophilus species based on phylogenomic principles
Cited by: 39
Author(s): Sara Burgess, Steve Flint, D. Lindsay, Murray P. Cox, Patrick J. Biggs
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0191690

Splenic macrophages are required for protective innate immunity against West Nile virus
Cited by: 13
Author(s): Marianne A. Bryan, Daniela Giordano, Kevin E. Draves, Richard Green, Michael Gale, Edward A. Clark
Software Mentions: 1
Published: over 8 years ago

10.1128/JCM.00881-16

Resolution of a Protracted Serogroup B Meningococcal Outbreak with Whole-Genome Sequencing Shows Interspecies Genetic Transfer
Cited by: 11
Author(s): Robert M. Mulhall, Carina Brehony, Lois O’Connor, Kenneth Meyler, Keith A. Jolley, James E. Bray, Désirée E. Bennett, Martin Maiden, Robert Cunney
Software Mentions: 1
Published: almost 10 years ago

10.3390/ijms19113438

Identification of Soybean Genes Whose Expression is Affected by the Ensifer fredii HH103 Effector Protein NopP
Cited by: 15
Author(s): Jinhui Wang, Jieqi Wang, Chunyan Liu, Chao Ma, Changyu Li, Yongqian Zhang, Zhaoming Qi, Rong Zhu, Yan Shi, Jianan Zou, Qingying Li, Junjie Zhu, Yan Wen, Zhijun Sun, Hanxi Liu, Hongwei Jiang, Zhan Yin, Zhenbang Hu, Qingshan Chen, Xiaoxia Wu, Dawei Xin
Software Mentions: 1
Published: almost 8 years ago

10.1002/mnfr.201900818

Lifestyle‐Intervention‐Induced Reduction of Abdominal Fat Is Reflected by a Decreased Circulating Glycerol Level and an Increased HDL Diameter
Cited by: 4
Author(s): Marian Beekman, Bianca A. M. Schutte, Erik B. van den Akker, Raymond Noordam, Petra Dibbets‐Schneider, Lioe‐Fee de Geus‐Oei, Joris Deelen, Ondine van de Rest, Diana van Heemst, Edith J. M. Feskens, P. Eline Slagboom
Software Mentions: 1
Published: over 6 years ago

10.1186/s12866-021-02125-1

Dysbiosis of gut microbiota and its correlation with dysregulation of cytokines in psoriasis patients
Cited by: 32
Author(s): Xinyue Zhang, Lingfei Shi, Ting Sun, Kun Guo, Shuang Geng
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20040997

Transcriptomic Analysis for Indica and Japonica Rice Varieties under Aluminum Toxicity
Cited by: 10
Author(s): Peng Zhang, Zhuoran Ding, Zhengzheng Zhong, Hanhua Tong
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-020-72063-x

Rapid growth inhibitory activity of a YafQ-family endonuclease toxin of the Helicobacter pylori tfs4 integrative and conjugative element
Cited by: 2
Author(s): Kwadwo Boampong, Stephanie L Smith, Robin M Delahay
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0185008

Microbial analysis of Zetaproteobacteria and co-colonizers of iron mats in the Troll Wall Vent Field, Arctic Mid-Ocean Ridge
Cited by: 22
Author(s): Jan Vander Roost, Ingunn H. Thorseth, Helge K. Dahle
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0111267

Differential Expressions of the Alternatively Spliced Variant mRNAs of the µ Opioid Receptor Gene, OPRM1, in Brain Regions of Four Inbred Mouse Strains
Cited by: 32
Author(s): Jin Xu, Zhigang Lu, Mingming Xu, Grace C. Rossi, Benjamin Kest, Amanda R. Waxman, Gavril W. Pasternak, Ying–Xian Pan
Software Mentions: 1
Published: almost 12 years ago

10.3390/ijms20071691

Dynamic TMT-Based Quantitative Proteomics Analysis of Critical Initiation Process of Totipotency during Cotton Somatic Embryogenesis Transdifferentiation
Cited by: 12
Author(s): Haixia Guo, Huihui Guo, Li Zhang, Yijie Fan, Yuhang Fan, Zhengmin Tang, Fanchang Zeng
Software Mentions: 1
Published: over 7 years ago

10.1186/s40478-016-0364-x

Telomere shortening leads to an acceleration of synucleinopathy and impaired microglia response in a genetic mouse model
Cited by: 35
Author(s): Annika Scheffold, Inge R. Holtman, Sandra Dieni, Nieske Brouwer, Sarah‐Fee Katz, Billy Michael Chelliah Jebaraj, Philipp J. Kahle, Bastian Hengerer, André Lechel, Stephan Stilgenbauer, Erik Boddeke, Bart J. L. Eggen, K. Lenhard Rudolph, Knut Biber
Software Mentions: 1
Published: about 10 years ago

10.18632/oncotarget.14894

Inhibition of CDK8 mediator kinase suppresses estrogen dependent transcription and the growth of estrogen receptor positive breast cancer
Cited by: 91
Author(s): Martina S.J. McDermott, Alexander A. Chumanevich, Chang-Uk Lim, Jiaxin Liang, Mengqian Chen, Serena Altilia, David J. Oliver, James M. Rae, Michael Shtutman, Hippokratis Kiaris, Balázs Győrffy, Igor B. Roninson, Eugenia V. Broude
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.ppat.1000767

Universal Features of Post-Transcriptional Gene Regulation Are Critical for Plasmodium Zygote Development
Cited by: 236
Author(s): Gunnar R. Mair, Edwin Lasonder, Lindsey S. Garver, Blandine Franke-Fayard, Céline Carret, J. Wiegant, Roeland W. Dirks, George Dimopoulos, Chris J. Janse, Andrew P. Waters
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.ppat.1001097

The Microbiota Mediates Pathogen Clearance from the Gut Lumen after Non-Typhoidal Salmonella Diarrhea
Cited by: 294
Author(s): Kathrin Endt, Baerbel Stecher, Samuel Chaffron, Emma Slack, Nicolas Tchitchek, Arndt Benecke, Laurye Van Maele, Jean‐Claude Sirard, A. Mueller, Mathias Heikenwälder, Andrew J. Macpherson, Richard A. Strugnell, Christian von Mering, Wolf‐Dietrich Hardt
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.ppat.1002584

Dengue Virus Infection Perturbs Lipid Homeostasis in Infected Mosquito Cells
Cited by: 264
Author(s): Rushika Perera, Catherine P. Riley, Giorgis Isaac, Amber S. Hopf-Jannasch, Ronald J. Moore, Karl Weitz, Ljiljana Paša‐Tolić, Thomas O. Metz, Jiřı́ Adamec, Richard Kühn
Software Mentions: 1
Published: over 14 years ago

10.3892/mmr.2015.3773

Identification of key transcription factors in caerulein-induced pancreatitis through expression profiling data
Cited by: 4
Author(s): Dachuan Qi, Bo Wu, Danian Tong, Ye Pan, Wei Chen
Software Mentions: 1
Published: over 11 years ago

10.18632/aging.100961

Metabolic drift in the aging brain
Cited by: 73
Author(s): Julijana Ivanišević, Kelly L. Stauch, Michael Petrascheck, H. Paul Benton, Adrian A. Epstein, Mingliang Fang, Santhi Gorantla, Minerva Tran, Linh Hoang, Michael E. Kurczy, Michael D. Boska, Howard Eliot Gendelman, Howard S. Fox, Gary Siuzdak
Software Mentions: 1
Published: over 10 years ago

10.1002/ece3.2176

A review of extensive variation in the design of pitfall traps and a proposal for a standard pitfall trap design for monitoring ground‐active arthropod biodiversity
Cited by: 100
Author(s): Grant Richard Brown, Iain M. Matthews
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.ppat.1005133

Mitochondrial Activity and Cyr1 Are Key Regulators of Ras1 Activation of C. albicans Virulence Pathways
Cited by: 88
Author(s): Nora Grahl, Elora G. Demers, Allia K. Lindsay, Colleen E. Harty, Sven D. Willger, Amy E. Piispanen, Deborah A. Hogan
Software Mentions: 1
Published: about 11 years ago

10.1038/s41598-020-76836-2

Similarities and differences between the ‘cytokine storms’ in acute dengue and COVID-19
Cited by: 23
Author(s): Shashika Dayarathna, Chandima Jeewandara, Laksiri Gomes, Gayasha Somathilaka, Deshni Jayathilaka, Vimalahan Vimalachandran, Ananda Wijewickrama, Eranga Narangoda, Damayanthi Idampitiya, Graham S. Ogg, Gathsaurie Neelika Malavige
Software Mentions: 1
Published: almost 6 years ago

10.3390/molecules26041128

A Significant Change in Free Amino Acids of Soybean (Glycine max L. Merr) through Ethylene Application
Cited by: 5
Author(s): Yeong Jun Ban, Yeong Hun Song, Jeong‐Yoon Kim, Joon Yung, Imdad Ali, Aizhamal Baiseitova, Abdul Bari Shah, Woe‐Yeon Kim, Ki Hun Park
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0110076

Characterization of Egg Laying Hen and Broiler Fecal Microbiota in Poultry Farms in Croatia, Czech Republic, Hungary and Slovenia
Cited by: 63
Author(s): Petra Vídeňská, Masudur Rahman, Marcela Faldynová, Vladimír Babák, Marta Matulová, Estella Prukner‐Radovčić, Ivan Križek, Sonja Smole-Možina, Jasna Kovač, Ama Szmolka, Béla Nagy, Karel Sedlář, Darina Čejková, Ivan Rychlı́k
Software Mentions: 1
Published: almost 12 years ago

10.1038/s41598-020-78484-y

Metabolomics analysis of plasma and adipose tissue samples from mice orally administered with polydextrose and correlations with cecal microbiota
Cited by: 7
Author(s): Markku Saarinen, Olli Kärkkäinen, Kati Hanhineva, Kirsti Tiihonen, Ashley A. Hibberd, Kari Mäkelä, Ghulam Shere Raza, Karl‐Heinz Herzig, Heli Anglenius
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.ppat.1006718

Tissue-specific transcriptome analyses provide new insights into GPCR signalling in adult Schistosoma mansoni
Cited by: 25
Author(s): Steffen Hahnel, Nic Wheeler, Zhigang Lu, Arporn Wangwiwatsin, Paul McVeigh, Aaron G. Maule, Matthew Berriman, Timothy A. Day, Paula Ribeiro, Christoph G. Grevelding
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0226425

Genome-wide comparisons of gene expression in adult versus elderly burn patients
Cited by: 5
Author(s): Stephanie Dreckmann, Saeid Amini-Nik, Ronald G. Tompkins, Miliana Vojvodic, Marc G. Jeschke
Software Mentions: 1
Published: over 6 years ago

10.1186/s12866-015-0610-6

Liver and blood cytokine microenvironment in HCV patients is associated to liver fibrosis score: a proinflammatory cytokine ensemble orchestrated by TNF and tuned by IL-10
Cited by: 32
Author(s): Soriane de Souza-Cruz, Marilú Barbieri Victória, Andréa Monteiro Tarragô, Allyson Guimarães Costa, João Paulo Diniz Pimentel, Ericka Florêncio Pires, Lorene de Paula Araújo, Jordana Grazziela Alves Coelho-dos-Reis, Matheus de Souza Gomes, Laurence Rodrigues do Amaral, Andréa Teixeira-Carvalho, Olindo Assis Martins‐Filho, Flamir da Silva Victória, Adriana Malheiro
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms20246160

Quantitative Proteomic Analysis Uncovers the Mediation of Endoplasmic Reticulum Stress-Induced Autophagy in DHAV-1-Infected DEF Cells
Cited by: 11
Author(s): Jingjing Lan, Ruihua Zhang, Honglei Yu, Jingyu Wang, Wenxiang Xue, Junhao Chen, Shaoli Lin, Yu Wang, Zhixun Xie, Shijin Jiang
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-020-80937-3

The impact of smoking different tobacco types on the subgingival microbiome and periodontal health: a pilot study
Cited by: 12
Author(s): Sausan Al Kawas, Farah Al-Marzooq, Betul Rahman, Jenni A. Shearston, Hiba Saad, Dalenda Benzina, Michael Weitzman
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules25174001

Anti-Obesity and Gut Microbiota Modulation Effect of Secoiridoid-Enriched Extract from Fraxinus mandshurica Seeds on High-Fat Diet-Fed Mice
Cited by: 15
Author(s): Sheng Guo, Haoan Zhao, Zhengliang Ma, Shanshan Zhang, Mingrou Li, Zhou Zheng, Xiaolin Ren, Chi Tang Ho, Naisheng Bai
Software Mentions: 1
Published: about 6 years ago

10.18632/aging.103395

Identification of immunological subtypes of hepatocellular carcinoma with expression profiling of immune-modulating genes
Cited by: 11
Author(s): Di Cao, Meng-Ke Chen, Qingfeng Zhang, Yufeng Zhou, Mei‐Yin Zhang, Shi-Juan Mai, Yaojun Zhang, Minshan Chen, Xiaoxing Li, Huiyun Wang
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-021-81540-w

Photoperiodic regulation of dopamine signaling regulates seasonal changes in retinal photosensitivity in mice
Cited by: 7
Author(s): Kousuke Okimura, Yusuke Nakane, Taeko Nishiwaki‐Ohkawa, Takashi Yoshimura
Software Mentions: 1
Published: over 5 years ago

10.1186/s12866-016-0762-z

Consensus computational network analysis for identifying candidate outer membrane proteins from Borrelia spirochetes
Cited by: 18
Author(s): Melisha R. Kenedy, Edgar J. Scott, Binu Shrestha, Asha Anand, Henna Iqbal, Justin D. Radolf, David W. Dyer, Darrin R. Akins
Software Mentions: 1
Published: about 10 years ago

10.1186/1755-8166-7-8

Differences and homologies of chromosomal alterations within and between breast cancer cell lines: a clustering analysis
Cited by: 36
Author(s): Milena Rondón-Lagos, Ludovica Verdun di Cantogno, Caterina Marchiò, Nelson Rangel, César Payán‐Gómez, Patrizia Gugliotta, C. Botta, Gianni Bussolati, Sandra Ramírez-Clavijo, Barbara Pasini, Anna Sapino
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0102949

Differences in Gene Expression between Mouse and Human for Dynamically Regulated Genes in Early Embryo
Cited by: 25
Author(s): Elo Madissoon, Virpi Töhönen, Liselotte Vesterlund, Shintaro Katayama, Per Unneberg, José Inzunza, Outi Hovatta, Juha Kere
Software Mentions: 1
Published: about 12 years ago

10.1093/hmg/ddaa146

Pre-natal manifestation of systemic developmental abnormalities in spinal muscular atrophy
Cited by: 20
Author(s): Anna A. L. Motyl, Kiterie M E Faller, Ewout J N Groen, Ronald A. Kline, Samantha L. Eaton, Leire M. Ledahawsky, Helena Chaytow, Douglas J. Lamont, Thomas M. Wishart, Yu-Ting Huang, Thomas H. Gillingwater
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21010278

Changes in Proteome and Protein Phosphorylation Reveal the Protective Roles of Exogenous Nitrogen in Alleviating Cadmium Toxicity in Poplar Plants
Cited by: 29
Author(s): Jin-Liang Huang, Xiaolu Wu, Fengchun Tian, Qi Chen, Pengrui Luo, Fan Zhang, Xueqin Wan, Yu Zhong, Qinglin Liu, Tiantian Lin
Software Mentions: 1
Published: over 6 years ago

10.1080/22221751.2020.1813636

Accurate serology for SARS-CoV-2 and common human coronaviruses using a multiplex approach
Cited by: 44
Author(s): Sophie van Tol, Ramona Mögling, Wentao Li, Gert Jan Godeke, Arno Swart, Barbara J.M. Bergmans, A. H. Brandenburg, Kristin Kremer, Jean Luc Murk, Josine van Beek, Bas Wintermans, Johan Reimerink, Berend Jan Bosch, Chantal Reusken
Software Mentions: 1
Published: over 6 years ago

10.1186/1476-4598-9-303

Investigation of DNA damage response and apoptotic gene methylation pattern in sporadic breast tumors using high throughput quantitative DNA methylation analysis technology
Cited by: 33
Author(s): Ranjana Pal, Niraj Kumar Srivastava, Rupali Chopra, Sailesh Gochhait, Pawan Gupta, Neeraj Prakash, Gaurav Agarwal, R. Bamezai
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0116915

SHBG Gene Polymorphism (rs1799941) Associates with Metabolic Syndrome in Children and Adolescents
Cited by: 7
Author(s): Marquitta J. White, Fatih Eren, Deniz Ağırbaşlı, Scott M. Williams, Mehmet Ağırbaşlı
Software Mentions: 1
Published: over 11 years ago

10.1136/rmdopen-2020-001175

Achieving sustained minimal disease activity with methotrexate in early interleukin 23-driven early psoriatic arthritis
Cited by: 4
Author(s): Hannah den Braanker, Kim Wervers, Anne‐Marie Mus, Priyanka S Bangoer, Nadine Davelaar, Jolanda J. Luime, I. Tchetverikov, Johanna M. W. Hazes, Marijn Vis, Erik Lubberts, Marc R. Kok
Software Mentions: 1
Published: about 6 years ago

10.1080/15476286.2019.1646079

Targeted sequencing reveals expanded genetic diversity of human transfer RNAs
Cited by: 18
Author(s): Matthew D. Berg, Daniel J. Giguere, Jacqueline S. Dron, Jeremy T. Lant, Julie Genereaux, Calwing Liao, Jian Wang, John F. Robinson, Gregory B. Gloor, Robert A. Hegele, Patrick O’Donoghue, Christopher J. Brandl
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms21062131

Influence of Salt Stress on Growth of Spermosphere Bacterial Communities in Different Peanut (Arachis hypogaea L.) Cultivars
Cited by: 9
Author(s): Yang Xu, Dai Zhang, Lei Dai, Hong Ding, Dunwei Ci, Feifei Qin, Guanchu Zhang, Zhimeng Zhang
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0052481

Primed Pluripotent Cell Lines Derived from Various Embryonic Origins and Somatic Cells in Pig
Cited by: 60
Author(s): Jin Kyu Park, Hye Sun Kim, Kyungjun Uh, Kwang‐Hwan Choi, Hyeong Min Kim, Taeheon Lee, Byung Chul Yang, Hyun Jong Kim, Hak Hyun Ka, Heebal Kim, Chang Kyu Lee
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0246150

Uncovering potential host proteins and pathways that may interact with eukaryotic short linear motifs in viral proteins of MERS, SARS and SARS2 coronaviruses that infect humans
Cited by: 5
Author(s): Cheng Yang, Zhi Ling Shi
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-015-2231-8

Differential expression of small RNAs under chemical stress and fed-batch fermentation in E. coli
Cited by: 22
Author(s): Martin Holm Rau, Klara Bojanovič, Alex Toftgaard Nielsen, Katherine S. Long
Software Mentions: 1
Published: almost 11 years ago

10.3389/fimmu.2020.01474

Nicotine Changes the microRNA Profile to Regulate the FOXO Memory Program of CD8+ T Cells in Rheumatoid Arthritis
Cited by: 9
Author(s): Caroline Wasén, Caroline Ospelt, Alessandro Camponeschi, Malin C. Erlandsson, Karin Andersson, Sofia Töyrä Silfverswärd, Maria Bokarewa
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0162851

Quantitative Proteomic Analysis of Wheat Seeds during Artificial Ageing and Priming Using the Isobaric Tandem Mass Tag Labeling
Cited by: 39
Author(s): Yangyong Lv, Shuai-Bing Zhang, Jinshui Wang, Yuansen Hu
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12864-019-6119-x

A high-resolution genomic composition-based method with the ability to distinguish similar bacterial organisms
Cited by: 4
Author(s): Yizhuang Zhou, Wenting Zhang, Huixian Wu, Kai Huang, Junfei Jin
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13072-016-0053-9

The histone demethylase dKDM5/LID interacts with the SIN3 histone deacetylase complex and shares functional similarities with SIN3
Cited by: 34
Author(s): Ambikai Gajan, Valerie L. Barnes, Mengying Liu, Nirmalya Saha, Lori A. Pile
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0089958

Transcriptomic Analysis of (Group I) Clostridium botulinum ATCC 3502 Cold Shock Response
Cited by: 27
Author(s): Elias Dahlsten, Marita A. Isokallio, Panu Somervuo, Miia Lindström, Hannu Korkeala
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-021-85356-6

Wnt5A modulates integrin expression in a receptor-dependent manner in ovarian cancer cells
Cited by: 6
Author(s): Vajihe Azimian-Zavareh, Zeinab Dehghani-Ghobadi, Marzieh Ebrahimi, Kian Mirzazadeh, Irina Nazarenko, Ghamartaj Hossein
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2016.01892

Waste Conversion into n-Caprylate and n-Caproate: Resource Recovery from Wine Lees Using Anaerobic Reactor Microbiomes and In-line Extraction
Cited by: 96
Author(s): Leo A. Kucek, Jiajie Xu, Mytien Nguyen, Largus T. Angenent
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0056111

A Multi-Omic Systems-Based Approach Reveals Metabolic Markers of Bacterial Vaginosis and Insight into the Disease
Cited by: 106
Author(s): Carl J. Yeoman, Susan M. Thomas, Margret E. Berg Miller, Alexander Ulanov, Manolito Torralba, Lucas Sk, Marcus Gillis, Melissa Cregger, Andrés Gómez, Mengfei Ho, Steven R. Leigh, Rebecca M. Stumpf, Douglas J. Creedon, Michael A. Smith, Jon S. Weisbaum, Karen E. Nelson, Brenda A. Wilson, Bryan A. White
Software Mentions: 1
Published: over 13 years ago

10.1038/s41598-021-86593-5

Exercise rapidly alters proteomes in mice following spinal cord demyelination
Cited by: 14
Author(s): Brian Lozinski, Luiz G. N. de Almeida, Claudia Silva, Yifei Dong, Dennis Brown, Sameeksha Chopra, V. Wee Yong, Antoine Dufour
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0120463

In vivo Investigations of the Effect of Short- and Long-Term Recombinant Growth Hormone Treatment on DNA-Methylation in Humans
Cited by: 7
Author(s): Julia Kolarova, Ole Ammerpohl, Jana Gutwein, Maik Welzel, Inka Baus, Felix G. Riepe, Thomas Eggermann, Almuth Caliebe, Paul‐Martin Holterhus, Reiner Siebert, Susanne Bens
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-021-86548-w

Systemic alterations play a dominant role in epigenetic predisposition to breast cancer in offspring of obese fathers and is transmitted to a second generation
Cited by: 1
Author(s): Camile Castilho Fontelles, Raquel Santana da Cruz, Alexandra K. Gonsiewski, Ersilia Barin, Volkan Tekmen, Lü Jin, M. Idalia Cruz, Olivier Loudig, Anni Wärri, Sônia de Assis
Software Mentions: 1
Published: over 5 years ago

10.1038/srep10932

Phenotypic diversity within a Pseudomonas aeruginosa population infecting an adult with cystic fibrosis
Cited by: 79
Author(s): Shawn T. Clark, Julio Diaz Caballero, Mary Cheang, Bryan Coburn, Pauline W. Wang, Sylva L. Donaldson, Yu Zhang, Mingyao Liu, Shaf Keshavjee, Yvonne Yau, Valerie Waters, D. Elizabeth Tullis, David S. Guttman, David Hwang
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2164-11-332

Understanding the evolutionary relationships and major traits of Bacillus through comparative genomics
Cited by: 142
Author(s): Luis David Alcaraz, Gabriel Moreno‐Hagelsieb, Luis E. Eguiarte, Valeria Souza, Luis Herrera-Estrella, Gabriela Olmedo
Software Mentions: 1
Published: over 16 years ago

10.18632/oncotarget.16320

Targeting the PIM protein kinases for the treatment of a T-cell acute lymphoblastic leukemia subset
Cited by: 32
Author(s): Megha Padi, Libia A. Luevano, Ningfei An, Ritu Pandey, Neha Singh, Jin H. Song, Jon C. Aster, Xue-Zhong Yu, Shikhar Mehrotra, Andrew S. Kraft
Software Mentions: 1
Published: over 9 years ago

10.3390/microorganisms9081689

Deciphering the Endophytic and Rhizospheric Microbial Communities of a Metallophyte Commelina communis in Different Cu-Polluted Soils
Cited by: 4
Author(s): Li He, Yi Ren, Weimin Zeng, Xueling Wu, Li Shen, Runlan Yu, Yuandong Liu, Jiaokun Li
Software Mentions: 1
Published: about 5 years ago

10.1038/srep15930

Chemogenomic profiling of Plasmodium falciparum as a tool to aid antimalarial drug discovery
Cited by: 35
Author(s): Anupam Pradhan, Geoffrey H. Siwo, Naresh Singh, Brian Martens, Bharath Balu, Katrina A. Button-Simons, Aiping Tan, Min Zhang, Kenneth O. Udenze, Rays H. Y. Jiang, Michael T. Ferdig, John Adams, Dennis E. Kyle
Software Mentions: 1
Published: almost 11 years ago

10.1098/rsob.130097

Ubiquitination site preferences in anaphase promoting complex/cyclosome (APC/C) substrates
Cited by: 38
Author(s): Mingwei Min, Ugo Mayor, Catherine Lindon
Software Mentions: 1
Published: about 13 years ago

10.3390/ijms21113755

Identification and Expression Profiling of Toll-Like Receptors of Brown Trout (Salmo trutta) during Proliferative Kidney Disease
Cited by: 13
Author(s): Arun Sudhagar, Mansour El-Matbouli, Gokhlesh Kumar
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0148682

Evaluating the Metal Tolerance Capacity of Microbial Communities Isolated from Alberta Oil Sands Process Water
Cited by: 8
Author(s): Mathew L. Frankel, Marc A. Demeter, Joe Lemire, Raymond J. Turner
Software Mentions: 1
Published: over 10 years ago

10.1098/rsob.150190

Transcriptional and phenotypical heterogeneity of Trypanosoma cruzi cell populations
Cited by: 17
Author(s): Víctor Seco-Hidalgo, Luis Miguel De Pablos, Antonio Osuna
Software Mentions: 1
Published: almost 11 years ago

10.1098/rsob.200265

Ageing genetic signature of hypersomatotropism
Cited by: 0
Author(s): Abdalla Elbialy
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.633756

EZH2-Mediated microRNA-375 Upregulation Promotes Progression of Breast Cancer via the Inhibition of FOXO1 and the p53 Signaling Pathway
Cited by: 19
Author(s): Xin Guan, Aiping Shi, Yabin Zou, Meiyang Sun, Yue Zhan, Yi Dong, Zhimin Fan
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-10-296

Genomic diversity of pathogenic Escherichia coli of the EHEC 2 clonal complex
Cited by: 24
Author(s): Galeb Abu-Ali, David W. Lacher, Lukas M. Wick, Weihong Qi, Thomas S. Whittam
Software Mentions: 1
Published: over 17 years ago

10.1186/s12864-015-2151-7

Comprehensive characterization of a time-course transcriptional response induced by autotoxins in Panax ginseng using RNA-Seq
Cited by: 23
Author(s): Bin Wu, Qiliang Long, Yuan Gao, Zi Wang, Tianwei Shao, Yanan Liu, Yong Li, Wanlong Ding
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep21084

Serum microRNA microarray analysis identifies miR-4429 and miR-4689 are potential diagnostic biomarkers for biliary atresia
Cited by: 38
Author(s): Rui Dong, Zhen Shen, Chengchao Zheng, Gong Chen, Shan Zheng
Software Mentions: 1
Published: over 10 years ago

10.1155/2016/2106465

Global Mapping of Traditional Chinese Medicine into Bioactivity Space and Pathways Annotation Improves Mechanistic Understanding and Discovers Relationships between Therapeutic Action (Sub)classes
Cited by: 8
Author(s): Siti Zuraidah Mohamad Zobir, Fazlin Mohd Fauzi, Sonia Liggi, Georgios Drakakis, Xinping Fu, Tai-Ping Fan, Andreas Bender
Software Mentions: 1
Published: over 10 years ago

10.1038/srep21618

Correlations of Fecal Metabonomic and Microbiomic Changes Induced by High-fat Diet in the Pre-Obesity State
Cited by: 109
Author(s): Hong Lin, Yanpeng An, Fuhua Hao, Yulan Wang, Huiru Tang
Software Mentions: 1
Published: over 10 years ago

10.1155/2018/3248521

Comparative Proteomic Analysis of Two Differently Extracted Coptis chinensis in the Treatment of Type 2 Diabetic Rats
Cited by: 4
Author(s): Xiang Qiu, Xinyu Wei, Hongwei Guan, Hao Su, Jing Gong, Ke Fang, Xin Zou, Hui Dong, Li Xu, Fanghong Lu
Software Mentions: 1
Published: almost 8 years ago

10.1155/2016/2503267

Bioenergy and Breast Cancer: A Report on Tumor Growth and Metastasis
Cited by: 4
Author(s): Alice Running, Mark C. Greenwood, Laura Hildreth, Jade Schmidt
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-021-94060-4

Observing the silent world under COVID-19 with a comprehensive impact analysis based on human mobility
Cited by: 8
Author(s): Shaobin Wang, Yun Tong, Yupeng Fan, Haimeng Liu, Jun Wu, Zheye Wang, Chuanglin Fang
Software Mentions: 1
Published: about 5 years ago

10.1038/srep24967

Model-based genotype-phenotype mapping used to investigate gene signatures of immune sensitivity and resistance in melanoma micrometastasis
Cited by: 17
Author(s): Guido Santos, Светослав Николов, Xin Lai, Martin Eberhardt, Florian S. Dreyer, Sushmita Paul, Gerold Schuler, Julio Vera
Software Mentions: 1
Published: over 10 years ago

10.1155/2020/8816824

Clinicopathological and Molecular Characteristics of Pleomorphic Invasive Lobular Carcinoma
Cited by: 3
Author(s): Jennifer Segar, Ritu Pandey, Kiah Farr, Raymond B. Nagle, Lauren LeBeau, Victor Gonzalez, Pavani Chalasani
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2020.590121

Maturation of Monocyte-Derived DCs Leads to Increased Cellular Stiffness, Higher Membrane Fluidity, and Changed Lipid Composition
Cited by: 21
Author(s): Jennifer J. Lühr, Nils Alex, Lukas Amon, Martin Kräter, Markéta Kubánková, Erdinç Sezgin, Christian Lehmann, Lukas Heger, Gordon F. Heidkamp, Ana‐Sunčana Smith, Vasily Zaburdaev, Rainer A. Böckmann, Ilya Levental, Michael L. Dustin, Christian Eggeling, Jochen Guck, Diana Dudziak
Software Mentions: 1
Published: almost 6 years ago

10.3390/nu12082238

Ginseng-Induced Changes to Blood Vessel Dilation and the Metabolome of Rats
Cited by: 9
Author(s): Hyeon-Jeong Lee, Bomin Kim, Soo Hee Lee, Ju-Tae Sohn, Jae Woong Choi, Chang‐Won Cho, Hee‐Do Hong, Young Kyoung Rhee, Hyun‐Jin Kim
Software Mentions: 1
Published: about 6 years ago

10.1038/srep28327

Metatranscriptomics reveals the molecular mechanism of large granule formation in granular anammox reactor
Cited by: 35
Author(s): Samik Bagchi, Regina Lamendella, Steven Strutt, Mark C.M. van Loosdrecht, Pascal E. Saikaly
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2164-10-200

Genome wide expression analysis of CBS domain containing proteins in Arabidopsis thaliana (L.) Heynh and Oryza sativa L. reveals their developmental and stress regulation
Cited by: 98
Author(s): Hemant R. Kushwaha, Anil Kumar Singh, Sudhir K. Sopory, Sneh L. Singla‐Pareek, Ashwani Pareek
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2164-13-359

The ribonuclease Dis3 is an essential regulator of the developmental transcriptome
Cited by: 32
Author(s): Dong Hou, Miriam Osés Ruiz, Erik D. Andrulis
Software Mentions: 1
Published: about 14 years ago

10.1038/s41598-021-97338-9

Global analysis of lysine acetylation in soybean leaves
Cited by: 8
Author(s): Li Geng, Bin Zheng, Wei Zhao, Ting-Hu Ren, Xinghui Zhang, Tangyuan Ning, Peng Liu
Software Mentions: 1
Published: about 5 years ago

10.1038/srep31745

Fine needle aspirate flow cytometric phenotyping characterizes immunosuppressive nature of the mesothelioma microenvironment
Cited by: 23
Author(s): Patrick H. Lizotte, Robert E. Jones, Lauren Keogh, Elena Ivanova, Hongye Liu, Mark M. Awad, Peter S. Hammerman, Ritu R. Gill, William G. Richards, David A. Barbie, Adam J. Bass, Raphael Bueno, Jessie M. English, Mark Bittinger, Kwok-Kin Wong
Software Mentions: 1
Published: about 10 years ago

10.3390/ijms21144819

Transcriptome and Hormone Analyses Revealed Insights into Hormonal and Vesicle Trafficking Regulation among Olea europaea Fruit Tissues in Late Development
Cited by: 7
Author(s): B. Briegas, Jorge Corbacho, M.C. Parra-Lobato, Miguel A. Paredes, Juana Labrador, Mercedes Gallardo, M.C. Gómez-Jiménez
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0101480

Intrinsic Differences between Oral and Skin Keratinocytes
Cited by: 90
Author(s): Anna Turabelidze, Shujuan Guo, Allison Yen Chung, Lin Chen, Yang Dai, Phillip T. Marucha, Luisa A. DiPietro
Software Mentions: 1
Published: about 12 years ago

10.1038/srep33706

Transcriptomic comparison between Brassica oleracea and rice (Oryza sativa) reveals diverse modulations on cell death in response to Sclerotinia sclerotiorum
Cited by: 8
Author(s): Jiaqin Mei, Yijuan Ding, Yuehua Li, Chaobo Tong, Hao Du, Yang Yu, Heng Wan, Qing Xiong, Jingyin Yu, Liu S, Jiana Li, Wei Qian
Software Mentions: 1
Published: almost 10 years ago

10.1002/mbo3.731

Comparative genomics of theKomagataeibacterstrains—Efficient bionanocellulose producers
Cited by: 47
Author(s): Małgorzata Ryngajłło, Katarzyna Kubiak, Marzena Jędrzejczak-Krzepkowska, Paulina Jacek, Stanisław Bielecki
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12864-015-2258-x

Genome-wide analysis of the basic leucine zipper (bZIP) transcription factor gene family in six legume genomes
Cited by: 69
Author(s): Zhihui Wang, Ke Cheng, Ling‐Shu Wan, Liying Yan, Huifang Jiang, Liu S, Yong Lei, Boshou Liao
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep35688

Machine-learned pattern identification in olfactory subtest results
Cited by: 12
Author(s): Jörn Lötsch, Thomas Hummel, Alfred Ultsch
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep35669

Lipid remodelling in the reef-building honeycomb worm, Sabellaria alveolata, reflects acclimation and local adaptation to temperature
Cited by: 21
Author(s): Anna P. Muir, Flávia L. D. Nunes, Stanislas F. Dubois, Fabrice Pernet
Software Mentions: 1
Published: almost 10 years ago

Projects: cran: gplots

Enhanced Analysis

Science Score: 85/100

Bonuses:

Penalties:

Papers Mentioning gplots 2,122