cran: gplots | Projects | Ecosyste.ms: Papers

10.3389/fphys.2018.01399

Proteomic Responses Under Cold Stress Reveal Unique Cold Tolerance Mechanisms in the Pacific White Shrimp (Litopenaeus vannamei)
Cited by: 15
Author(s): J. Peng, Pingping He, Pinyuan Wei, Bin Zhang, Yang Zhao, Qiangyong Li, Xiuli Chen, Min Peng, Dingyuan Zeng, Chunling Yang
Software Mentions: 1
Published: about 8 years ago

10.1038/srep15930

Chemogenomic profiling of Plasmodium falciparum as a tool to aid antimalarial drug discovery
Cited by: 35
Author(s): Anupam Pradhan, Geoffrey H. Siwo, Naresh Singh, Brian Martens, Bharath Balu, Katrina A. Button-Simons, Aiping Tan, Min Zhang, Kenneth O. Udenze, Rays H. Y. Jiang, Michael T. Ferdig, John Adams, Dennis E. Kyle
Software Mentions: 1
Published: about 11 years ago

10.18632/oncotarget.12909

Hedgehog pathway dysregulation contributes to the pathogenesis of human gastrointestinal stromal tumors via GLI-mediated activation of KIT expression
Cited by: 26
Author(s): Chih Min Tang, Tracy E. Lee, Sabriya A. Syed, Adam M. Burgoyne, Samantha Leonard, Fei Gao, Jonathan C.H. Chan, Eileen Shi, Juliann Chmielecki, Deborah Morosini, Kai Wang, Jeffrey S. Ross, Michael L. Kendrick, Michael R. Bardsley, Martina De Siena, Junhao Mao, Olivier Harismendy, Tamás Ördög, Jason K. Sicklick
Software Mentions: 1
Published: about 10 years ago

10.1038/srep21084

Serum microRNA microarray analysis identifies miR-4429 and miR-4689 are potential diagnostic biomarkers for biliary atresia
Cited by: 38
Author(s): Rui Dong, Zhen Shen, Chengchao Zheng, Gong Chen, Shan Zheng
Software Mentions: 1
Published: over 10 years ago

10.1038/srep21618

Correlations of Fecal Metabonomic and Microbiomic Changes Induced by High-fat Diet in the Pre-Obesity State
Cited by: 109
Author(s): Hong Lin, Yanpeng An, Fuhua Hao, Yulan Wang, Huiru Tang
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms21113755

Identification and Expression Profiling of Toll-Like Receptors of Brown Trout (Salmo trutta) during Proliferative Kidney Disease
Cited by: 13
Author(s): Arun Sudhagar, Mansour El-Matbouli, Gokhlesh Kumar
Software Mentions: 1
Published: over 6 years ago

10.1038/srep24967

Model-based genotype-phenotype mapping used to investigate gene signatures of immune sensitivity and resistance in melanoma micrometastasis
Cited by: 17
Author(s): Guido Santos, Светослав Николов, Xin Lai, Martin Eberhardt, Florian S. Dreyer, Sushmita Paul, Gerold Schuler, Julio Vera
Software Mentions: 1
Published: over 10 years ago

10.3389/fonc.2019.00930

Phospho-Protein Arrays as Effective Tools for Screening Possible Targets for Kinase Inhibitors and Their Use in Precision Pediatric Oncology
Cited by: 7
Author(s): Jakub Neradil, Michal Kýr, Kristýna Polášková, Leoš Křen, Petra Macigova, J. Škoda, Jaroslav Štěrba, Renata Veselská
Software Mentions: 1
Published: about 7 years ago

10.3389/fonc.2020.562253

Long Noncoding RNA LOC400043 (LINC02381) Inhibits Gastric Cancer Progression Through Regulating Wnt Signaling Pathway
Cited by: 28
Author(s): Meisam Jafarzadeh, Bahram Mohammad Soltani
Software Mentions: 1
Published: about 6 years ago

10.1038/srep28327

Metatranscriptomics reveals the molecular mechanism of large granule formation in granular anammox reactor
Cited by: 35
Author(s): Samik Bagchi, Regina Lamendella, Steven Strutt, Mark C.M. van Loosdrecht, Pascal E. Saikaly
Software Mentions: 1
Published: over 10 years ago

10.3389/fonc.2021.691500

A Newly Identified lncBCAS1-4_1 Associated With Vitamin D Signaling and EMT in Ovarian Cancer Cells
Cited by: 3
Author(s): Yi Xue, Ping Wang, Fei Jiang, Jie Yu, Hongmei Ding, Zengli Zhang, Hailong Pei, Bingyan Li
Software Mentions: 1
Published: over 5 years ago

10.1038/srep31745

Fine needle aspirate flow cytometric phenotyping characterizes immunosuppressive nature of the mesothelioma microenvironment
Cited by: 23
Author(s): Patrick H. Lizotte, Robert E. Jones, Lauren Keogh, Elena Ivanova, Hongye Liu, Mark M. Awad, Peter S. Hammerman, Ritu R. Gill, William G. Richards, David A. Barbie, Adam J. Bass, Raphael Bueno, Jessie M. English, Mark Bittinger, Kwok-Kin Wong
Software Mentions: 1
Published: about 10 years ago

10.18632/oncotarget.14894

Inhibition of CDK8 mediator kinase suppresses estrogen dependent transcription and the growth of estrogen receptor positive breast cancer
Cited by: 91
Author(s): Martina S.J. McDermott, Alexander A. Chumanevich, Chang-Uk Lim, Jiaxin Liang, Mengqian Chen, Serena Altilia, David J. Oliver, James M. Rae, Michael Shtutman, Hippokratis Kiaris, Balázs Győrffy, Igor B. Roninson, Eugenia V. Broude
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep33706

Transcriptomic comparison between Brassica oleracea and rice (Oryza sativa) reveals diverse modulations on cell death in response to Sclerotinia sclerotiorum
Cited by: 8
Author(s): Jiaqin Mei, Yijuan Ding, Yuehua Li, Chaobo Tong, Hao Du, Yang Yu, Heng Wan, Qing Xiong, Jingyin Yu, Liu S, Jiana Li, Wei Qian
Software Mentions: 1
Published: about 10 years ago

10.1038/srep35688

Machine-learned pattern identification in olfactory subtest results
Cited by: 12
Author(s): Jörn Lötsch, Thomas Hummel, Alfred Ultsch
Software Mentions: 1
Published: about 10 years ago

10.1038/srep35669

Lipid remodelling in the reef-building honeycomb worm, Sabellaria alveolata, reflects acclimation and local adaptation to temperature
Cited by: 21
Author(s): Anna P. Muir, Flávia L. D. Nunes, Stanislas F. Dubois, Fabrice Pernet
Software Mentions: 1
Published: about 10 years ago

10.1038/srep37088

Exosomes derived from embryonal and alveolar rhabdomyosarcoma carry differential miRNA cargo and promote invasion of recipient fibroblasts
Cited by: 37
Author(s): Sandra E. Ghayad, Ghina Rammal, Farah Ghamloush, Hussein Basma, Rihab Nasr, Mona Diab‐Assaf, Claude Chelala, Raya Saab
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep39638

Single-cell analysis of differences in transcriptomic profiles of oocytes and cumulus cells at GV, MI, MII stages from PCOS patients
Cited by: 49
Author(s): Qiwei Liu, Yumei Li, Yun Feng, George Liu, Jieliang Ma, Yifei Li, Hui-Xian Xiang, Yao Ji, Yunxia Cao, Xiaowen Tong, Zhigang Xue
Software Mentions: 1
Published: almost 10 years ago

10.3389/fonc.2019.01054

Identification of Candidate Biomarkers and Analysis of Prognostic Values in Oral Squamous Cell Carcinoma
Cited by: 48
Author(s): Guangzhao Huang, Qimeng Wu, Zenan Zheng, Ting-ru Shao, Xiaoyang Lv
Software Mentions: 1
Published: about 7 years ago

10.1038/srep40349

Characterization of two polyvalent phages infecting Enterobacteriaceae
Cited by: 96
Author(s): Sana Hamdi, Geneviève M. Rousseau, Simon J. Labrie, Denise M. Tremblay, Rim Kourda, Karim Ben Slama, Sylvain Moineau
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0111267

Differential Expressions of the Alternatively Spliced Variant mRNAs of the µ Opioid Receptor Gene, OPRM1, in Brain Regions of Four Inbred Mouse Strains
Cited by: 32
Author(s): Jin Xu, Zhigang Lu, Mingming Xu, Grace C. Rossi, Benjamin Kest, Amanda R. Waxman, Gavril W. Pasternak, Ying–Xian Pan
Software Mentions: 1
Published: about 12 years ago

10.1038/srep42165

Physiological and transcriptomic analyses reveal a response mechanism to cold stress in Santalum album L. leaves
Cited by: 55
Author(s): Xinhua Zhang, Jaime A. Teixeira da Silva, Meiyun Niu, Mingzhi Li, Chunmei He, Zhao Jian-Gao, Songjun Zeng, Jun Duan, Guohua Ma
Software Mentions: 1
Published: almost 10 years ago

10.18632/oncotarget.16320

Targeting the PIM protein kinases for the treatment of a T-cell acute lymphoblastic leukemia subset
Cited by: 32
Author(s): Megha Padi, Libia A. Luevano, Ningfei An, Ritu Pandey, Neha Singh, Jin H. Song, Jon C. Aster, Xue-Zhong Yu, Shikhar Mehrotra, Andrew S. Kraft
Software Mentions: 1
Published: over 9 years ago

10.1038/srep43417

Population genomics of an endemic Mediterranean fish: differentiation by fine scale dispersal and adaptation
Cited by: 66
Author(s): Carlos Carreras, Víctor Ordóñez, Lorenzo Zane, Claudia Kruschel, Ina Nasto, Enrique Macpherson, Marta Pascual
Software Mentions: 1
Published: over 9 years ago

10.1038/srep43421

Abnormalities in A-to-I RNA editing patterns in CNS injuries correlate with dynamic changes in cell type composition
Cited by: 34
Author(s): Nurit Gal-Mark, Lea Shallev, Sahar Sweetat, Manouchehr Barak, Jin Billy Li, Erez Y. Levanon, Eli Eisenberg, Oded Behar
Software Mentions: 1
Published: over 9 years ago

10.1111/jvh.12310

Elevated interferon-stimulated gene transcription in peripheral blood mononuclear cells occurs in patients infected with genotype 1 but not genotype 3 hepatitis C virus
Cited by: 6
Author(s): Mark W. Robinson, Rachael Swann, Alex Sigruener, Stephen T. Barclay, Peter R. Mills, John McLauchlan, Arvind H. Patel
Software Mentions: 1
Published: about 12 years ago

10.1038/srep46308

Profiling the neutralizing antibody response in chronically HIV-1 CRF07_BC-infected intravenous drug users naïve to antiretroviral therapy
Cited by: 5
Author(s): Xintao Hu, Yuanyuan Hu, Chen Zhao, Hongmei Gao, Kelli Greene, Li Ren, Liying Ma, Yuhua Ruan, Marcella Sarzotti‐Kelsoe, David C. Montefiori, Kui Hong, Yiming Shao
Software Mentions: 1
Published: over 9 years ago

10.3389/fnins.2019.01365

Tryptophan Metabolism by Gut Microbiome and Gut-Brain-Axis: An in silico Analysis
Cited by: 164
Author(s): Harrisham Kaur, Chandrani Bose, Sharmila S. Mande
Software Mentions: 1
Published: almost 7 years ago

10.1038/srep46163

Transcriptome Analysis of Mango (Mangifera indica L.) Fruit Epidermal Peel to Identify Putative Cuticle-Associated Genes
Cited by: 57
Author(s): Julio C. Tafolla-Arellano, Yi Zheng, Honghe Sun, Chen Jiao, Eliel Ruíz-May, Miguel Ángel Hernández‐Oñate, Alberto González-León, Reginaldo Báez-Sañudo, Zhangjun Fei, David S. Domozych, Jocelyn K. C. Rose, Martín Ernesto Tiznado-Hérnández
Software Mentions: 1
Published: over 9 years ago

10.3389/fnins.2018.00220

Transcriptional Profiling of Ligand Expression in Cell Specific Populations of the Adult Mouse Forebrain That Regulates Neurogenesis
Cited by: 11
Author(s): Kasum Azim, Rainer Akkermann, Martina Cantone, Julio Vera, Janusz Jadasz, Patrick Küry
Software Mentions: 1
Published: over 8 years ago

10.3389/fnmol.2021.665931

Transcriptome Analysis Reveals the Role of Cellular Calcium Disorder in Varicella Zoster Virus-Induced Post-Herpetic Neuralgia
Cited by: 13
Author(s): Songbin Wu, Shaomin Yang, Mingxi Ou, Jiamin Chen, Jinbo Huang, Dehua Xiong, Wuping Sun, Lizu Xiao
Software Mentions: 1
Published: over 5 years ago

10.3390/nu12113252

Bilberry Anthocyanins Ameliorate NAFLD by Improving Dyslipidemia and Gut Microbiome Dysbiosis
Cited by: 33
Author(s): Hironobu Nakano, Shusong Wu, Kozue Sakao, Taichi Hara, Jianhua He, Santos García, Kalidas Shetty, De‐Xing Hou
Software Mentions: 1
Published: about 6 years ago

10.3389/fnmol.2013.00049

Genome-wide assessment of post-transcriptional control in the fly brain
Cited by: 8
Author(s): Shaul Mezan, Reut Ashwal-Fluss, Rom Shenhav, Manuel Garber, Sebastián Kadener
Software Mentions: 1
Published: almost 14 years ago

10.3389/fmicb.2021.619711

Soil Disturbance Affects Plant Productivity via Soil Microbial Community Shifts
Cited by: 7
Author(s): Taylor J. Seitz, Ursel M. E. Schütte, Devin M. Drown
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2017.01459

Comparative Sequence Analysis of Multidrug-Resistant IncA/C Plasmids from Salmonella enterica
Cited by: 27
Author(s): Maria Hoffmann, James B. Pettengill, Narjol González-Escalona, John N. Miller, Sherry Ayers, Shaohua Zhao, Marc W. Allard, Patrick F. McDermott, Eric W. Brown, Steven R. Monday
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-04251-1

Proteomic analysis reveals large amounts of decomposition enzymes and major metabolic pathways involved in algicidal process of Trametes versicolor F21a
Cited by: 15
Author(s): Xueyan Gao, Congyan Wang, Wei Dai, Shenrong Ren, Fang Tao, Xueli He, Guomin Han, Wei Wang
Software Mentions: 1
Published: over 9 years ago

10.1007/s00125-021-05491-7

Polygenic risk scores predict diabetes complications and their response to intensive blood pressure and glucose control
Cited by: 18
Author(s): Johanne Tremblay, Mounsif Haloui, Redha Attaoua, Ramzan Tahir, Camil Hishmih, François Harvey, François-Christophe Marois-Blanchet, Carole Long, Paul Simon, Lara Santucci, Candan Hızel, John Chalmers, Michel Marre, Stephen Harrap, Renata Cífková, Alena Krajčoviechová, David R. Matthews, Bryan Williams, Neil Poulter, Sophia Zoungas, Stephen Colagiuri, Giuseppe Mancia, Diederick E. Grobbee, Anthony Rodgers, Liusheng Liu, Mawussé Agbessi, Vanessa Bruat, Marie-Julie Favé, Michelle P Harwood, Philip Awadalla, Mark Woodward, Julie Hussin, Pavel Hamet
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-06999-y

Locus of Adhesion and Autoaggregation (LAA), a pathogenicity island present in emerging Shiga Toxin–producing Escherichia coli strains
Cited by: 60
Author(s): David A. Montero, Juliana Velasco, Felipe Del Canto, José L. Puente, Nora Lía Padola, David A. Rasko, Mauricio J. Farfán, Juan Carlos Salazar, Roberto Vidal
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.17564

Overexpression of a novel candidate oncogene KIF14 correlates with tumor progression and poor prognosis in prostate cancer
Cited by: 38
Author(s): Yixiang Zhang, Yeqing Yuan, Peidong Liang, Zhaoxia Zhang, Xiaojing Guo, Ligang Xia, Yingying Zhao, Xing-sheng Shu, Song Sun, Ying Ying, Yingduan Cheng
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.18664

miR-331-3p and Aurora Kinase inhibitor II co-treatment suppresses prostate cancer tumorigenesis and progression
Cited by: 19
Author(s): Michael R. Epis, Keith M. Giles, Dianne J. Beveridge, Kirsty Richardson, Patrick A. Candy, Lisa M. Stuart, Jacqueline M. Bentel, Ronald J. Cohen, Peter J. Leedman
Software Mentions: 1
Published: over 9 years ago

10.1016/j.dib.2020.105636

Data on miRNome changes in human cells exposed to nano- or ionic- forms of Cadmium
Cited by: 3
Author(s): Laura Paesano, Marta Marmiroli, Massimiliano G. Bianchi, Jason C. White, Ovidio Bussolati, A. Zappettini, Marco Villani, Nelson Marmiroli
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0110076

Characterization of Egg Laying Hen and Broiler Fecal Microbiota in Poultry Farms in Croatia, Czech Republic, Hungary and Slovenia
Cited by: 63
Author(s): Petra Vídeňská, Masudur Rahman, Marcela Faldynová, Vladimír Babák, Marta Matulová, Estella Prukner‐Radovčić, Ivan Križek, Sonja Smole-Možina, Jasna Kovač, Ama Szmolka, Béla Nagy, Karel Sedlář, Darina Čejková, Ivan Rychlı́k
Software Mentions: 1
Published: about 12 years ago

10.1016/j.dib.2018.11.090

Transcriptomic data for analyzing global gene expression patterns in Methicillin-resistance Staphylococcus aureus in response to spermine and oxacillin stress
Cited by: 2
Author(s): Shrikant Pawar, Xiangyu Yao, Chao Lu
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-017-09439-z

α7 nicotinic acetylcholine receptor signaling modulates the inflammatory phenotype of fetal brain microglia: first evidence of interference by iron homeostasis
Cited by: 22
Author(s): Marina Farrel Cortês, Mingju Cao, H. L. Liu, Craig S. Moore, Lucien Daniel Durosier, Patrick Burns, Gilles Fecteau, André Desrochers, Luis B. Barreiro, Jack P. Antel, Martin G. Frasch
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0226425

Genome-wide comparisons of gene expression in adult versus elderly burn patients
Cited by: 5
Author(s): Stephanie Dreckmann, Saeid Amini-Nik, Ronald G. Tompkins, Miliana Vojvodic, Marc G. Jeschke
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-12362-y

Combinatorial control of gene expression in Aspergillus niger grown on sugar beet pectin
Cited by: 47
Author(s): Joanna E. Kowalczyk, Ronnie J.M. Lubbers, Mao Peng, Evy Battaglia, Jaap Visser, Ronald P. de Vries
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-13265-8

microRNA profiling in lung tissue and bronchoalveolar lavage of cigarette smoke-exposed mice and in COPD patients: a translational approach
Cited by: 40
Author(s): Griet Conickx, Francisco Avila Cobos, Maarten van den Berge, Alen Faiz, Wim Timens, Pieter S. Hiemstra, Guy Joos, Guy Brusselle, Pieter Mestdagh, Ken R. Bracke
Software Mentions: 1
Published: about 9 years ago

10.1016/j.dib.2017.06.032

Fatty acid and lipidomic data in normal and tumor colon tissues of rats fed diets with and without fish oil
Cited by: 2
Author(s): Zora Djurić, Muhammad N. Aslam, B Simon, Ananda Sen, Yan Jiang, Jianwei Ren, Rena Chan, Tanu Soni, Thekkelnaycke M. Rajendiran, William L. Smith, Dean E. Brenner
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-14161-x

Recurrent water deficit causes epigenetic and hormonal changes in citrus plants
Cited by: 56
Author(s): Diana Matos Neves, Lucas Aragão da Hora Almeida, Dayse Drielly Souza Santana-Vieira, Luciano Freschi, Cláudia Fortes Ferreira, Walter dos Santos Soares Filho, Márcio Gilberto Cardoso Costa, Fabienne Micheli, M. A. Coelho Filho, Abelmon da Silva Gesteira
Software Mentions: 1
Published: about 9 years ago

10.1186/s12014-020-09279-6

Effects of cryopreservation and long-term culture on biological characteristics and proteomic profiles of human umbilical cord-derived mesenchymal stem cells
Cited by: 19
Author(s): Xufeng Fu, Bo Xu, Jiang Jiang, Xing Du, Xiaoli Yu, Yaping Yan, Shanshan Li, Briauna Marie Inglis, Huiming Ma, Hongyan Wang, Xiuying Pei, Wei Si
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-017-14823-w

High throughput discovery of influenza virus neutralizing antibodies from phage-displayed synthetic antibody libraries
Cited by: 15
Author(s): Ing-Chien Chen, Yi-Kai Chiu, Yu Chen, Cheng-Chung Lee, Chang‐Shung Tung, Yueh-Liang Tsou, Yu‐Hsuan Huang, Chii-Wann Lin, Hong-Sen Chen, Andrew H.J. Wang, An-Suei Yang
Software Mentions: 1
Published: about 9 years ago

10.1186/s12014-018-9214-0

Differential analysis of quantitative proteome and acetyl-proteome profiling between premenopausal and postmenopausal ovarian tissues
Cited by: 1
Author(s): Jun Yi, Huatianshu Hu, Peipei Shi, Shuangshuang Song, Jing Zhao, Lan Xu, Weining Yang, Bin Li, Zhu Jin, Shien Zou
Software Mentions: 1
Published: almost 8 years ago

10.1128/JVI.00066-20

Characterization and Genomic Analysis of ValSw3-3, a New Siphoviridae Bacteriophage Infecting Vibrio alginolyticus
Cited by: 24
Author(s): Ling Chen, Quan Liu, Fan Jia, Tingwei Yan, Haoran Zhang, Jian Yang, Deng Deng, Chaolan Liu, Ting Wei, Yingfei Ma
Software Mentions: 1
Published: over 6 years ago

10.1186/s12014-021-09314-0

Quantitative proteomics analysis of lysine 2-hydroxyisobutyrylation in IgA nephropathy
Cited by: 5
Author(s): Shaoying Huang, Fengping Zheng, Lin Hua, Xianqing Zhou, Huixuan Xu, Cantong Zhang, Weier Dai, Berthold Hocher, Xinzhou Zhang, Donge Tang, Yong Dai
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-017-15660-7

Fungal networks serve as novel ecological routes for enrichment and dissemination of antibiotic resistance genes as exhibited by microcosm experiments
Cited by: 18
Author(s): Rashid Nazir, Ju-Pei Shen, Jun‐Tao Wang, Hang‐Wei Hu, Ji‐Zheng He
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-16082-1

Microbial communities in the native habitats of Agaricus sinodeliciosus from Xinjiang Province revealed by amplicon sequencing
Cited by: 18
Author(s): Jiemin Zhou, Xuming Bai, Rui-Lin Zhao
Software Mentions: 1
Published: almost 9 years ago

10.18632/oncotarget.10479

Synthetic lethal genetic interactions between Rad54 and PARP-1 in mouse development and oncogenesis
Cited by: 2
Author(s): Mirella Tanori, Arianna Casciati, Francesco Berardinelli, Simona Leonardi, Emanuela Pasquali, Francesca Antonelli, Barbara Tanno, Paola Giardullo, Alessandro Pannicelli, Gabriele Babini, Ilaria De Stefano, Antonella Sgura, Mariateresa Mancuso, Anna Saran, Simonetta Pazzaglia
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-017-16858-5

Adrenergic receptor agonists induce the differentiation of pluripotent stem cell-derived hepatoblasts into hepatocyte-like cells
Cited by: 9
Author(s): Maki Kotaka, Tarō Toyoda, Katsutaro Yasuda, Yuko Kitano, Chihiro Okada, Akira Ohta, Akira Watanabe, Motonari Uesugi, Kenji Osafune
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-17689-0

DUSP1 regulates apoptosis and cell migration, but not the JIP1-protected cytokine response, during Respiratory Syncytial Virus and Sendai Virus infection
Cited by: 18
Author(s): Alexa C. Robitaille, Élise Caron, Nicolas Zucchini, Espérance Mukawera, Damien Adam, Mélissa K. Mariani, Anaïs Gélinas, Audray Fortin, Emmanuelle Brochiero, Nathalie Grandvaux
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-18236-7

Involvement of Innate Immune System in Late Stages of Inherited Photoreceptor Degeneration
Cited by: 30
Author(s): Raghavi Sudharsan, Daniel P. Beiting, Gustavo D. Aguirre, William A. Beltran
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-19093-0

Phenotypic and Functional Characterization of Peripheral Sensory Neurons derived from Human Embryonic Stem Cells
Cited by: 36
Author(s): Abdullah J Alshawaf, Serena Viventi, Wanzhi Qiu, Giovanna M. D’Abaco, Bryony A Nayagam, Michael Erlichster, Gursharan Chana, Ian Everall, Jason J. Ivanusic, Efstratios Skafidas, Mirella Dottori
Software Mentions: 1
Published: almost 9 years ago

10.1111/cei.13403

Expression profiling of single cells and patient cohorts identifies multiple immunosuppressive pathways and an altered NK cell phenotype in glioblastoma
Cited by: 48
Author(s): Helen J. Close, Lucy F. Stead, Jérémie Nsengimana, Katrina A. Reilly, Alastair P. Droop, Heiko Wurdak, Ryan Mathew, Robert Corns, Julia Newton‐Bishop, Alan Melcher, Susan Short, Graham P. Cook, Erica Wilson
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-21591-8

In silico guided reconstruction and analysis of ICAM-1-binding var genes from Plasmodium falciparum
Cited by: 4
Author(s): Eilidh Carrington, Thomas D. Otto, Tadge Szestak, Frank Lennartz, Matthew K. Higgins, Chris Newbold, Alister G. Craig
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-23090-2

A proteomic insight into vitellogenesis during tick ovary maturation
Cited by: 26
Author(s): Marina Amaral Xavier, Lucas Tirloni, Antônio Frederico Michel Pinto, Jolene K. Diedrich, John R. Yates, Albert Mulenga, Carlos Logullo, Itabajara da Silva Vaz, Adriana Seixas, Carlos Termignoni
Software Mentions: 1
Published: over 8 years ago

10.1186/s13148-018-0541-9

Epigenome-wide DNA methylation regulates cardinal pathological features of psoriasis
Cited by: 66
Author(s): Aditi Chandra, Swapan Senapati, Sudipta Roy, Gobinda Chatterjee, Raghunath Chatterjee
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.22839

Polycomb protein RING1A limits hematopoietic differentiation in myelodysplastic syndromes
Cited by: 5
Author(s): Anna M. Palau, Anne-Kathrin Garz, Jeannine Diesch, Anabel Zwick, Roberto Malinverni, Vanesa Valero, Katrina M. Lappin, Raquel Casquero, Andreas Lennartsson, Johannes Zuber, Tomàs Navarro, Ken Mills, Katharina Götze, Marcus Buschbeck
Software Mentions: 1
Published: almost 9 years ago

10.18632/oncotarget.23406

Menopause and adipose tissue: miR-19a-3p is sensitive to hormonal replacement
Cited by: 22
Author(s): Reeta Kangas, Cristina Morsiani, G Pizza, Catia Lanzarini, Pauliina Aukee, Jaakko Kaprio, Sarianna Sipilä, Claudio Franceschi, Vuokko Kovanen, Eija K. Laakkonen, Miriam Capri
Software Mentions: 1
Published: almost 9 years ago

10.3390/cells9020513

Helicobacter Pylori Targets the EPHA2 Receptor Tyrosine Kinase in Gastric Cells Modulating Key Cellular Functions
Cited by: 18
Author(s): Marina Concli Leite, Miguel Sardinha Marques, Joana Melo, M. Pinto, Bruno Cavadas, Miguel Aroso, María Gómez-Lázaro, Raquel Seruca, Céu Figueiredo
Software Mentions: 1
Published: over 6 years ago

10.3390/cells10061495

Phenotypic Characterization by Single-Cell Mass Cytometry of Human Intrahepatic and Peripheral NK Cells in Patients with Hepatocellular Carcinoma
Cited by: 6
Author(s): Yuichi Yoshida, Sachiyo Yoshio, Taiji Yamazoe, Taizo Mori, Yuriko Tsustui, Hironari Kawai, Shiori Yoshikawa, Takasuke Fukuhara, Tomoyoshi Okamoto, Yoshihiro Ono, Yu Takahashi, Ryuki Hashida, Takumi Kawaguchi, Akinobu Taketomi, Tatsuya Kanto
Software Mentions: 1
Published: over 5 years ago

10.1186/s12967-016-0855-3

Testing chemotherapy efficacy in HER2 negative breast cancer using patient-derived spheroids
Cited by: 37
Author(s): Kathrin Halfter, Oliver Hoffmann, Nina Ditsch, Mareike Ahne, Frank Arnold, Stefan Paepke, Dieter Grab, Ingo Bauerfeind, Barbara Mayer
Software Mentions: 1
Published: over 10 years ago

10.3390/cells9041003

Sofosbuvir Activates EGFR-Dependent Pathways in Hepatoma Cells with Implications for Liver-Related Pathological Processes
Cited by: 9
Author(s): Denisa Bojkova, Sandra Westhaus, Rui Costa, Lejla Timmer, Nora Funkenberg, Marek Korencak, Hendrik Streeck, Florian W. R. Vondran, Ruth Broering, Stefan Heinrichs, Karl S. Lang, Sandra Ciesek
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.39981

Molecular pathway analysis towards understanding tissue vulnerability in spinocerebellar ataxia type 1
Cited by: 26
Author(s): Terri M. Driessen, Jong Seo Lee, Janghoo Lim
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41421-018-0056-8

Four putative SWI2/SNF2 chromatin remodelers have dual roles in regulating DNA methylation in Arabidopsis
Cited by: 18
Author(s): Donglei Yang, Guiping Zhang, Lili Wang, Jingwen Li, Dachao Xu, Cuiru Di, Kai Tang, Lan Yang, Liang Zeng, Daisuke Miki, Cheng‐Guo Duan, Huiming Zhang, Jian‐Kang Zhu
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0102949

Differences in Gene Expression between Mouse and Human for Dynamically Regulated Genes in Early Embryo
Cited by: 25
Author(s): Elo Madissoon, Virpi Töhönen, Liselotte Vesterlund, Shintaro Katayama, Per Unneberg, José Inzunza, Outi Hovatta, Juha Kere
Software Mentions: 1
Published: over 12 years ago

10.1038/s41419-018-0605-y

MicroRNA-29b/142-5p contribute to the pathogenesis of biliary atresia by regulating the IFN-γ gene
Cited by: 22
Author(s): Yifan Yang, Jiang Zhu, Rui Dong, Chengchao Zheng, Yanlei Huang, Yijie Zheng, Zhen Shen, Gong Chen, Xiaoying Luo, Shan Zheng
Software Mentions: 1
Published: over 8 years ago

10.1186/s12967-015-0605-y

Altered microRNAs expression profiling in cumulus cells from patients with polycystic ovary syndrome
Cited by: 48
Author(s): Suying Liu, Xuan Zhang, Changgen Shi, Jimin Lin, Guowu Chen, Bin Wu, Ligang Wu, Huijuan Shi, Yuan Yao, Weijin Zhou, Zilong Sun, Xi Dong, Jian Wang
Software Mentions: 1
Published: over 11 years ago

10.3390/ijms18040751

Exploring the Genetic Resistance to Gastrointestinal Nematodes Infection in Goat Using RNA-Sequencing
Cited by: 20
Author(s): Ali Akbar Bhuiyan, Jingjin Li, Zhenyang Wu, Peihong Ni, Adeyinka Abiola Adetula, Haiyan Wang, Cheng Zhang, Xiaohui Tang, Anjuman Ara Bhuyan, Zhao Song, Xiaoyong Du
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.27667

Therapeutic efficacy of liposomal Grb2 antisense oligodeoxynucleotide (L-Grb2) in preclinical models of ovarian and uterine cancer
Cited by: 4
Author(s): Olivia D. Lara, Emine Bayraktar, Paola Amero, Shaolin Ma, Cristina Ivan, Wei Hu, Ying Wang, Lingegowda S. Mangala, Prasanta Dutta, Pratip K. Bhattacharya, Ana Tari Ashizawa, Gabriel López-Berestein, Cristian Rodríguez-Aguayo, Anil K. Sood
Software Mentions: 1
Published: over 6 years ago

10.1038/s41419-021-03439-8

Akt kinase LANCL2 functions as a key driver in EGFR-mutant lung adenocarcinoma tumorigenesis
Cited by: 12
Author(s): Yu‐Qing Lou, Jianlin Xu, Yanwei Zhang, Wei Zhang, Xueyan Zhang, Ping Gu, Hua Zhong, Huimin Wang, Jun Lü, Baohui Han
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms19113438

Identification of Soybean Genes Whose Expression is Affected by the Ensifer fredii HH103 Effector Protein NopP
Cited by: 15
Author(s): Jinhui Wang, Jieqi Wang, Chunyan Liu, Chao Ma, Changyu Li, Yongqian Zhang, Zhaoming Qi, Rong Zhu, Yan Shi, Jianan Zou, Qingying Li, Junjie Zhu, Yan Wen, Zhijun Sun, Hanxi Liu, Hongwei Jiang, Zhan Yin, Zhenbang Hu, Qingshan Chen, Xiaoxia Wu, Dawei Xin
Software Mentions: 1
Published: about 8 years ago

10.1038/s41419-020-03252-9

A cross-talk between epithelium and endothelium mediates human alveolar–capillary injury during SARS-CoV-2 infection
Cited by: 73
Author(s): Peng Wang, Rong-Hua Luo, Min Zhang, Yaqing Wang, Tian-Zhang Song, Tingting Tao, Zhongyu Li, Lin Jin, Hong-Yi Zheng, Wenwen Chen, Mengqian Zhao, Yong‐Tang Zheng, Jianhua Qin
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms20040997

Transcriptomic Analysis for Indica and Japonica Rice Varieties under Aluminum Toxicity
Cited by: 10
Author(s): Peng Zhang, Zhuoran Ding, Zhengzheng Zhong, Hanhua Tong
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20071691

Dynamic TMT-Based Quantitative Proteomics Analysis of Critical Initiation Process of Totipotency during Cotton Somatic Embryogenesis Transdifferentiation
Cited by: 12
Author(s): Haixia Guo, Huihui Guo, Li Zhang, Yijie Fan, Yuhang Fan, Zhengmin Tang, Fanchang Zeng
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20246160

Quantitative Proteomic Analysis Uncovers the Mediation of Endoplasmic Reticulum Stress-Induced Autophagy in DHAV-1-Infected DEF Cells
Cited by: 11
Author(s): Jingjing Lan, Ruihua Zhang, Honglei Yu, Jingyu Wang, Wenxiang Xue, Junhao Chen, Shaoli Lin, Yu Wang, Zhixun Xie, Shijin Jiang
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms21010278

Changes in Proteome and Protein Phosphorylation Reveal the Protective Roles of Exogenous Nitrogen in Alleviating Cadmium Toxicity in Poplar Plants
Cited by: 29
Author(s): Jin-Liang Huang, Xiaolu Wu, Fengchun Tian, Qi Chen, Pengrui Luo, Fan Zhang, Xueqin Wan, Yu Zhong, Qinglin Liu, Tiantian Lin
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41419-021-03755-z

Loss of CEP70 function affects acrosome biogenesis and flagella formation during spermiogenesis
Cited by: 8
Author(s): Qiang Liu, Qingping Guo, Wei Guo, Shuangshuang Song, Nan Wang, Xi Chen, Andi Sun, Liying Yan, Jie Qiao
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21062131

Influence of Salt Stress on Growth of Spermosphere Bacterial Communities in Different Peanut (Arachis hypogaea L.) Cultivars
Cited by: 9
Author(s): Yang Xu, Dai Zhang, Lei Dai, Hong Ding, Dunwei Ci, Feifei Qin, Guanchu Zhang, Zhimeng Zhang
Software Mentions: 1
Published: over 6 years ago

10.1038/cddis.2017.5

Nuclear Drosha enhances cell invasion via an EGFR-ERK1/2-MMP7 signaling pathway induced by dysregulated miRNA-622/197 and their targets LAMC2 and CD82 in gastric cancer
Cited by: 51
Author(s): Lixiang Xu, Yixuan Hou, Gang Tu, Yanlin Chen, Yan‐e Du, Hailong Zhang, Siyang Wen, Xi Tang, Jun Yin, Lang Lei, Kai Sun, Guanglun Yang, Xiaoli Tang, Manran Liu
Software Mentions: 1
Published: over 9 years ago

10.1002/path.5373

Clinicopathological and molecular characterisation of ‘multiple‐classifier’ endometrial carcinomas
Cited by: 169
Author(s): Alicia León‐Castillo, Ester Gilvazquez, Remi A. Nout, Vincent T.H.B.M. Smit, Jessica N. McAlpine, Melissa K. McConechy, Stefan Kommoss, Sara Brucker, Joseph W. Carlson, Elisabeth Epstein, Tilman T. Rau, Robert A. Soslow, Raji Ganesan, Xavier Matías‐Guiu, Esther Oliva, Beth T. Harrison, David N. Church, C. Blake Gilks, Tjalling Bosse
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0116915

SHBG Gene Polymorphism (rs1799941) Associates with Metabolic Syndrome in Children and Adolescents
Cited by: 7
Author(s): Marquitta J. White, Fatih Eren, Deniz Ağırbaşlı, Scott M. Williams, Mehmet Ağırbaşlı
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0052481

Primed Pluripotent Cell Lines Derived from Various Embryonic Origins and Somatic Cells in Pig
Cited by: 60
Author(s): Jin Kyu Park, Hye Sun Kim, Kyungjun Uh, Kwang‐Hwan Choi, Hyeong Min Kim, Taeheon Lee, Byung Chul Yang, Hyun Jong Kim, Hak Hyun Ka, Heebal Kim, Chang Kyu Lee
Software Mentions: 1
Published: almost 14 years ago

10.3390/ijms21144819

Transcriptome and Hormone Analyses Revealed Insights into Hormonal and Vesicle Trafficking Regulation among Olea europaea Fruit Tissues in Late Development
Cited by: 7
Author(s): B. Briegas, Jorge Corbacho, M.C. Parra-Lobato, Miguel A. Paredes, Juana Labrador, Mercedes Gallardo, M.C. Gómez-Jiménez
Software Mentions: 1
Published: over 6 years ago

10.1038/s41419-021-04023-w

GRP78 determines glioblastoma sensitivity to UBA1 inhibition-induced UPR signaling and cell death
Cited by: 17
Author(s): Guanzheng Liu, Jiefeng Yu, Runqiu Wu, Lin Shi, Xu Zhang, Wanhong Zhang, Xiaorong Zhong, Yifeng Wang, Huan Li, Yang Shen, Changyong Wu, Rutong Yu, Mingshan Niu, Xuejiao Liu
Software Mentions: 1
Published: over 5 years ago

10.1098/rsob.130097

Ubiquitination site preferences in anaphase promoting complex/cyclosome (APC/C) substrates
Cited by: 38
Author(s): Mingwei Min, Ugo Mayor, Catherine Lindon
Software Mentions: 1
Published: about 13 years ago

10.1038/s41419-019-1503-7

Direct reprogramming of epidermal cells toward sweat gland-like cells by defined factors
Cited by: 12
Author(s): Bin Yao, Jiangfan Xie, Nanbo Liu, Tian Hu, Wei Song, Sha Huang, Xiaobing Fu
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms21207572

Integrated Analysis of the Transcriptome and Metabolome of Cecropia obtusifolia: A Plant with High Chlorogenic Acid Content Traditionally Used to Treat Diabetes Mellitus
Cited by: 9
Author(s): Jorge David Cadena-Zamudio, Pilar Nicasio-Torres, Juan L. Monribot‐Villanueva, José A. Guerrero-Analco, Enrique Ibarra-Laclette
Software Mentions: 1
Published: about 6 years ago

10.1016/j.cell.2018.01.004

NK Cells Stimulate Recruitment of cDC1 into the Tumor Microenvironment Promoting Cancer Immune Control
Cited by: 1,039
Author(s): Jan Böttcher, Eduardo Bonavita, Probir Chakravarty, Hanna Blees, Mar Cabeza-Cabrerizo, Stefano Sammicheli, Neil C. Rogers, Erik Sahai, Santiago Zelenay, Caetano Reis e Sousa
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms22031227

iPSC-Derived Hereditary Breast Cancer Model Reveals the BRCA1-Deleted Tumor Niche as a New Culprit in Disease Progression
Cited by: 13
Author(s): Lucie Portier, Christophe Desterke, Diana Chaker, Noufϊssa Oudrhiri, Afag Asgarova, Fatima Dkhissi, Ali G. Turhan, Annelise Bennaceur-Griscelli, Frank Griscelli
Software Mentions: 1
Published: almost 6 years ago

10.3390/cancers13184531

Attenuated Chromosome Oscillation as a Cause of Chromosomal Instability in Cancer Cells
Cited by: 2
Author(s): Kenji Iemura, Yujiro Yoshizaki, Kinue Kuniyasu, Kozo Tanaka
Software Mentions: 1
Published: about 5 years ago

10.3390/cancers13092096

Immune Monitoring during Therapy Reveals Activitory and Regulatory Immune Responses in High-Risk Neuroblastoma
Cited by: 7
Author(s): Celina L. Szanto, Annelisa M. Cornel, Sara M. Tamminga, Eveline M. Delemarre, Coco de Koning, Denise A. M. H. van den Beemt, Ester Dünnebach, Michelle L. Tas, Miranda P. Dierselhuis, Godelieve A.M. Tytgat, Max M. van Noesel, Kathelijne C.J.M. Kraal, Jaap-Jan Boelens, Alwin D. R. Huitema, Stefan Nierkens
Software Mentions: 1
Published: over 5 years ago

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