cran: gplots | Projects | Ecosyste.ms: Papers

10.1111/cei.13403

Expression profiling of single cells and patient cohorts identifies multiple immunosuppressive pathways and an altered NK cell phenotype in glioblastoma
Cited by: 48
Author(s): Helen J. Close, Lucy F. Stead, Jérémie Nsengimana, Katrina A. Reilly, Alastair P. Droop, Heiko Wurdak, Ryan Mathew, Robert Corns, Julia Newton‐Bishop, Alan Melcher, Susan Short, Graham P. Cook, Erica Wilson
Software Mentions: 1
Published: over 6 years ago

10.1186/1755-8166-7-8

Differences and homologies of chromosomal alterations within and between breast cancer cell lines: a clustering analysis
Cited by: 36
Author(s): Milena Rondón-Lagos, Ludovica Verdun di Cantogno, Caterina Marchiò, Nelson Rangel, César Payán‐Gómez, Patrizia Gugliotta, C. Botta, Gianni Bussolati, Sandra Ramírez-Clavijo, Barbara Pasini, Anna Sapino
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0234605

Understanding marine larval dispersal in a broadcast-spawning invertebrate: A dispersal modelling approach for optimising spat collection of the Fijian black-lip pearl oyster Pinctada margaritifera
Cited by: 6
Author(s): Monal M. Lal, Cyprien Bosserelle, Pranesh Kishore, Paul C. Southgate
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0137522

Integrated Analyses of Gene Expression Profiles Digs out Common Markers for Rheumatic Diseases
Cited by: 17
Author(s): Lan Wang, Long‐Fei Wu, Xin Lu, Xing‐Bo Mo, Zaixiang Tang, Shu‐Feng Lei, Fei‐Yan Deng
Software Mentions: 1
Published: almost 11 years ago

10.1128/AEM.01993-19

Comparative Genomics of Rumen Butyrivibrio spp. Uncovers a Continuum of Polysaccharide-Degrading Capabilities
Cited by: 54
Author(s): Nikola Palevich, William J. Kelly, Sinead C. Leahy, Stuart E. Denman, Eric Altermann, Jasna Rakonjac, Graeme T. Attwood
Software Mentions: 1
Published: over 6 years ago

10.1093/gigascience/giy124

Cost-effective assembly of the African wild dog (Lycaon pictus) genome using linked reads
Cited by: 19
Author(s): Ellie E. Armstrong, Ryan W. Taylor, Stefan Prost, Peter Blinston, Esther van der Meer, Hillary Madzikanda, Olivia Mufute, Roseline Mandisodza‐Chikerema, John Stuelpnagel, Claudio Sillero‐Zubiri, Dmitri A. Petrov
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2164-15-318

Pseudomonas aeruginosa clinical and environmental isolates constitute a single population with high phenotypic diversity
Cited by: 77
Author(s): María-Victoria Grosso-Becerra, Christian Santos‐Medellín, Abigail González‐Valdez, José-Luis Méndez, Gabriela Delgado, Rosario Morales-Espinosa, Luis Servı́n‐González, Luis David Alcaraz, Gloria Soberón‐Chávez
Software Mentions: 1
Published: over 12 years ago

10.1155/2016/8740901

Genome-Wide Characterization and Expression Profiles of the Superoxide Dismutase Gene Family inGossypium
Cited by: 14
Author(s): Jingbo Zhang, Bo Li, Yang Yang, Weiping Hu, Fangyuan Chen, Lixia Xie, Liancheng Fan
Software Mentions: 1
Published: over 10 years ago

10.1186/s13148-018-0541-9

Epigenome-wide DNA methylation regulates cardinal pathological features of psoriasis
Cited by: 66
Author(s): Aditi Chandra, Swapan Senapati, Sudipta Roy, Gobinda Chatterjee, Raghunath Chatterjee
Software Mentions: 1
Published: about 8 years ago

10.1186/s40478-016-0364-x

Telomere shortening leads to an acceleration of synucleinopathy and impaired microglia response in a genetic mouse model
Cited by: 35
Author(s): Annika Scheffold, Inge R. Holtman, Sandra Dieni, Nieske Brouwer, Sarah‐Fee Katz, Billy Michael Chelliah Jebaraj, Philipp J. Kahle, Bastian Hengerer, André Lechel, Stephan Stilgenbauer, Erik Boddeke, Bart J. L. Eggen, K. Lenhard Rudolph, Knut Biber
Software Mentions: 1
Published: about 10 years ago

10.1155/2020/5849323

Proteomic Analysis of Human Esophageal Cancer Using Tandem Mass Tag Quantifications
Cited by: 6
Author(s): Suofeng Sun, Huijuan Zhang, Yu Wang, Jing Gao, Shen Zhou, Yuan Li, Sun‐Young Han, Xiuling Li, Jian Li
Software Mentions: 1
Published: about 6 years ago

10.1002/sctm.16-0427

Selective Expansion of Skeletal Muscle Stem Cells from Bulk Muscle Cells in Soft Three-Dimensional Fibrin Gel
Cited by: 7
Author(s): Pei‐Wen Zhu, Yalu Zhou, Furen Wu, Yuanfan Hong, Xin Wang, Gajendra S. Shekhawat, Jeffrey Mosenson, Wen Shu Wu
Software Mentions: 1
Published: over 9 years ago

10.3390/cells9020513

Helicobacter Pylori Targets the EPHA2 Receptor Tyrosine Kinase in Gastric Cells Modulating Key Cellular Functions
Cited by: 18
Author(s): Marina Concli Leite, Miguel Sardinha Marques, Joana Melo, M. Pinto, Bruno Cavadas, Miguel Aroso, María Gómez-Lázaro, Raquel Seruca, Céu Figueiredo
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0171856

The influence of sexual activity on the vaginal microbiota and Gardnerella vaginalis clade diversity in young women
Cited by: 70
Author(s): Lenka A Vodstrcil, Jimmy Twin, Suzanne M. Garland, Christopher K. Fairley, Jane S Hocking, Matthew Law, Erica L Plummer, Katherine Fethers, Eric P F Chow, Sepehr N. Tabrizi, Catriona Bradshaw
Software Mentions: 1
Published: over 9 years ago

10.1155/2013/878956

Characteristics of Clinical Shiga Toxin-ProducingEscherichia coliIsolated from British Columbia
Cited by: 8
Author(s): Kevin Allen, Chad R. Laing, Ana Cancarevic, Yongxiang Zhang, Lili Rosana Mesak, Hai Xu, Ana Paccagnella, Victor P. J. Gannon, Linda Hoang
Software Mentions: 1
Published: over 13 years ago

10.3390/cells10061495

Phenotypic Characterization by Single-Cell Mass Cytometry of Human Intrahepatic and Peripheral NK Cells in Patients with Hepatocellular Carcinoma
Cited by: 6
Author(s): Yuichi Yoshida, Sachiyo Yoshio, Taiji Yamazoe, Taizo Mori, Yuriko Tsustui, Hironari Kawai, Shiori Yoshikawa, Takasuke Fukuhara, Tomoyoshi Okamoto, Yoshihiro Ono, Yu Takahashi, Ryuki Hashida, Takumi Kawaguchi, Akinobu Taketomi, Tatsuya Kanto
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0098420

Deep 16S rRNA Pyrosequencing Reveals a Bacterial Community Associated with Banana Fusarium Wilt Disease Suppression Induced by Bio-Organic Fertilizer Application
Cited by: 79
Author(s): Zongzhuan Shen, Dongsheng Wang, Yunze Ruan, Cong Xue, Jian Zhang
Software Mentions: 1
Published: over 12 years ago

10.3390/cells9041003

Sofosbuvir Activates EGFR-Dependent Pathways in Hepatoma Cells with Implications for Liver-Related Pathological Processes
Cited by: 9
Author(s): Denisa Bojkova, Sandra Westhaus, Rui Costa, Lejla Timmer, Nora Funkenberg, Marek Korencak, Hendrik Streeck, Florian W. R. Vondran, Ruth Broering, Stefan Heinrichs, Karl S. Lang, Sandra Ciesek
Software Mentions: 1
Published: over 6 years ago

10.3390/biom10091353

MiRNA Profiles of Extracellular Vesicles Secreted by Mesenchymal Stromal Cells—Can They Predict Potential Off-Target Effects?
Cited by: 13
Author(s): Timo Z. Nazari-Shafti, Sebastian Neuber, Ana G. Duran, Vasileios Exarchos, Christien Madlen Beez, Heike Meýborg, Katrin Krüger, Petra Wolint, Johanna Buschmann, R Böni, Martina Seifert, Volkmar Falk, Maximilian Y. Emmert
Software Mentions: 1
Published: almost 6 years ago

10.1264/jsme2.ME20081

Comparative Analysis of Microbial Communities in Fronds and Roots of Three Duckweed Species: Spirodela polyrhiza, Lemna minor, and Lemna aequinoctialis
Cited by: 15
Author(s): Tomoki Iwashita, Yasuhiro Tanaka, Hideyuki Tamaki, Yasuko Yoneda, Ayaka Makino, Yuka Tateno, Li Yan, Tadashi Toyama, Yoichi Kamagata, Koji Mori
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.01089-18

Parallel Evolution of Genome Streamlining and Cellular Bioenergetics across the Marine Radiation of a Bacterial Phylum
Cited by: 26
Author(s): Eric W. Getz, Saima Sultana Tithi, Liqing Zhang, Frank O. Aylward
Software Mentions: 1
Published: almost 8 years ago

10.1186/s40249-021-00821-8

Gut microbiota signatures in Schistosoma japonicum infection-induced liver cirrhosis patients: a case–control study
Cited by: 11
Author(s): Qifeng Gui, Huilin Jin, Feng Zhu, Haifeng Lü, Qin Zhang, Jia Xu, Yunmei Yang, Chi Xiao
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-10-S1-S4

Genome-wide prediction of cis-acting RNA elements regulating tissue-specific pre-mRNA alternative splicing
Cited by: 29
Author(s): Xin Wang, Kejun Wang, Milan Radovich, Yue Wang, Guohua Wang, Weixing Feng, Jeremy R. Sanford, Yunlong Liu
Software Mentions: 1
Published: about 17 years ago

10.3390/insects11080543

Functional Variation in Dipteran Gut Bacterial Communities in Relation to Their Diet, Life Cycle Stage and Habitat
Cited by: 12
Author(s): Rebekka Sontowski, Nicole M. van Dam
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pgen.0020120

Who Ate Whom? Adaptive Helicobacter Genomic Changes That Accompanied a Host Jump from Early Humans to Large Felines
Cited by: 153
Author(s): Mark Eppinger, Claudia Baar, Bodo Linz, Günter Raddatz, Christa Lanz, Heike Keller, Giovanna Morelli, Helga Gressmann, Mark Achtman, Stephan C. Schuster
Software Mentions: 1
Published: about 20 years ago

10.1038/s41598-021-85356-6

Wnt5A modulates integrin expression in a receptor-dependent manner in ovarian cancer cells
Cited by: 6
Author(s): Vajihe Azimian-Zavareh, Zeinab Dehghani-Ghobadi, Marzieh Ebrahimi, Kian Mirzazadeh, Irina Nazarenko, Ghamartaj Hossein
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-018-5320-7

Analysis of the distribution of assimilation products and the characteristics of transcriptomes in rice by submergence during the ripening stage
Cited by: 5
Author(s): Hyeon Seok Lee, Woon Ha Hwang, Jae Hyeok Jeong, Seung Hyeon Ahn, Jeong Seon Baek, Han Yong Jeong, Hong Kyu Park, Bon Il Ku, Jong Tak Yun, Geon Hwi Lee, Kyung San Choi
Software Mentions: 1
Published: over 7 years ago

10.1155/2015/874361

Genome-Wide Comparative Analysis of Flowering-Related Genes in Arabidopsis, Wheat, and Barley.
Cited by: 27
Author(s): Fred Y. Peng, Zhiqiu Hu, Rong‐Cai Yang
Software Mentions: 1
Published: over 11 years ago

10.1038/s41421-018-0056-8

Four putative SWI2/SNF2 chromatin remodelers have dual roles in regulating DNA methylation in Arabidopsis
Cited by: 18
Author(s): Donglei Yang, Guiping Zhang, Lili Wang, Jingwen Li, Dachao Xu, Cuiru Di, Kai Tang, Lan Yang, Liang Zeng, Daisuke Miki, Cheng‐Guo Duan, Huiming Zhang, Jian‐Kang Zhu
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41419-018-0605-y

MicroRNA-29b/142-5p contribute to the pathogenesis of biliary atresia by regulating the IFN-γ gene
Cited by: 22
Author(s): Yifan Yang, Jiang Zhu, Rui Dong, Chengchao Zheng, Yanlei Huang, Yijie Zheng, Zhen Shen, Gong Chen, Xiaoying Luo, Shan Zheng
Software Mentions: 1
Published: over 8 years ago

10.1172/jci.insight.143379

Brd4 modulates diet-induced obesity via PPARγ-dependent Gdf3 expression in adipose tissue macrophages
Cited by: 10
Author(s): Xiangming Hu, Xingchen Dong, Li Guo, Yanheng Chen, Jinjing Chen, Xian He, Hao Sun, Dong-Hyun Kim, Jongsook Kim Kemper, Linfeng Chen
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-015-2153-5

Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential
Cited by: 514
Author(s): Chandan Pal, Johan Bengtsson‐Palme, Erik Kristiansson, D. G. Joakim Larsson
Software Mentions: 1
Published: almost 11 years ago

10.3390/ijms21144819

Transcriptome and Hormone Analyses Revealed Insights into Hormonal and Vesicle Trafficking Regulation among Olea europaea Fruit Tissues in Late Development
Cited by: 7
Author(s): B. Briegas, Jorge Corbacho, M.C. Parra-Lobato, Miguel A. Paredes, Juana Labrador, Mercedes Gallardo, M.C. Gómez-Jiménez
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-017-09439-z

α7 nicotinic acetylcholine receptor signaling modulates the inflammatory phenotype of fetal brain microglia: first evidence of interference by iron homeostasis
Cited by: 22
Author(s): Marina Farrel Cortês, Mingju Cao, H. L. Liu, Craig S. Moore, Lucien Daniel Durosier, Patrick Burns, Gilles Fecteau, André Desrochers, Luis B. Barreiro, Jack P. Antel, Martin G. Frasch
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-06999-y

Locus of Adhesion and Autoaggregation (LAA), a pathogenicity island present in emerging Shiga Toxin–producing Escherichia coli strains
Cited by: 60
Author(s): David A. Montero, Juliana Velasco, Felipe Del Canto, José L. Puente, Nora Lía Padola, David A. Rasko, Mauricio J. Farfán, Juan Carlos Salazar, Roberto Vidal
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-04251-1

Proteomic analysis reveals large amounts of decomposition enzymes and major metabolic pathways involved in algicidal process of Trametes versicolor F21a
Cited by: 15
Author(s): Xueyan Gao, Congyan Wang, Wei Dai, Shenrong Ren, Fang Tao, Xueli He, Guomin Han, Wei Wang
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.27667

Therapeutic efficacy of liposomal Grb2 antisense oligodeoxynucleotide (L-Grb2) in preclinical models of ovarian and uterine cancer
Cited by: 4
Author(s): Olivia D. Lara, Emine Bayraktar, Paola Amero, Shaolin Ma, Cristina Ivan, Wei Hu, Ying Wang, Lingegowda S. Mangala, Prasanta Dutta, Pratip K. Bhattacharya, Ana Tari Ashizawa, Gabriel López-Berestein, Cristian Rodríguez-Aguayo, Anil K. Sood
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21207572

Integrated Analysis of the Transcriptome and Metabolome of Cecropia obtusifolia: A Plant with High Chlorogenic Acid Content Traditionally Used to Treat Diabetes Mellitus
Cited by: 9
Author(s): Jorge David Cadena-Zamudio, Pilar Nicasio-Torres, Juan L. Monribot‐Villanueva, José A. Guerrero-Analco, Enrique Ibarra-Laclette
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2021.559925

Immunological Hallmarks of Inflammatory Status in Vaso-Occlusive Crisis of Sickle Cell Anemia Patients
Cited by: 10
Author(s): Alexander Leonardo Silva-Junior, Nadja Pinto Garcia, Evilázio Cunha Cardoso, S Dias, Andréa Monteiro Tarragô, Nelson Abrahim Fraiji, Marcos Antônio Silvestre Gomes, Laurence Rodrigues do Amaral, Andréa Teixeira-Carvalho, Olindo Assis Martins‐Filho, Erich Vinícius De Paula, Allyson Guimarães Costa, Adriana Malheiro
Software Mentions: 1
Published: over 5 years ago

10.1038/srep46163

Transcriptome Analysis of Mango (Mangifera indica L.) Fruit Epidermal Peel to Identify Putative Cuticle-Associated Genes
Cited by: 57
Author(s): Julio C. Tafolla-Arellano, Yi Zheng, Honghe Sun, Chen Jiao, Eliel Ruíz-May, Miguel Ángel Hernández‐Oñate, Alberto González-León, Reginaldo Báez-Sañudo, Zhangjun Fei, David S. Domozych, Jocelyn K. C. Rose, Martín Ernesto Tiznado-Hérnández
Software Mentions: 1
Published: over 9 years ago

10.1002/path.5373

Clinicopathological and molecular characterisation of ‘multiple‐classifier’ endometrial carcinomas
Cited by: 169
Author(s): Alicia León‐Castillo, Ester Gilvazquez, Remi A. Nout, Vincent T.H.B.M. Smit, Jessica N. McAlpine, Melissa K. McConechy, Stefan Kommoss, Sara Brucker, Joseph W. Carlson, Elisabeth Epstein, Tilman T. Rau, Robert A. Soslow, Raji Ganesan, Xavier Matías‐Guiu, Esther Oliva, Beth T. Harrison, David N. Church, C. Blake Gilks, Tjalling Bosse
Software Mentions: 1
Published: over 6 years ago

10.1038/srep46308

Profiling the neutralizing antibody response in chronically HIV-1 CRF07_BC-infected intravenous drug users naïve to antiretroviral therapy
Cited by: 5
Author(s): Xintao Hu, Yuanyuan Hu, Chen Zhao, Hongmei Gao, Kelli Greene, Li Ren, Liying Ma, Yuhua Ruan, Marcella Sarzotti‐Kelsoe, David C. Montefiori, Kui Hong, Yiming Shao
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms22031227

iPSC-Derived Hereditary Breast Cancer Model Reveals the BRCA1-Deleted Tumor Niche as a New Culprit in Disease Progression
Cited by: 13
Author(s): Lucie Portier, Christophe Desterke, Diana Chaker, Noufϊssa Oudrhiri, Afag Asgarova, Fatima Dkhissi, Ali G. Turhan, Annelise Bennaceur-Griscelli, Frank Griscelli
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2018.03138

Dynamics of Gut Microbiome in Giant Panda Cubs Reveal Transitional Microbes and Pathways in Early Life
Cited by: 25
Author(s): Min Guo, Jianwei Chen, Qiongfang Li, Ying Fu, Guangyi Fan, Jinmin Ma, Ling Peng, Liyun Zeng, Jing Chen, Yayu Wang, Simon Ming‐Yuen Lee
Software Mentions: 1
Published: over 7 years ago

10.1038/srep43421

Abnormalities in A-to-I RNA editing patterns in CNS injuries correlate with dynamic changes in cell type composition
Cited by: 34
Author(s): Nurit Gal-Mark, Lea Shallev, Sahar Sweetat, Manouchehr Barak, Jin Billy Li, Erez Y. Levanon, Eli Eisenberg, Oded Behar
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2018.00568

Comparative Microbiome Analysis of a Fusarium Wilt Suppressive Soil and a Fusarium Wilt Conducive Soil From the Châteaurenard Region
Cited by: 93
Author(s): Katarzyna Siegel-Hertz, Véronique Edel-Hermann, Emilie Chapelle, Sébastien Terrat, Jos M. Raaijmakers, Christian Steinberg
Software Mentions: 1
Published: over 8 years ago

10.1098/rsob.130097

Ubiquitination site preferences in anaphase promoting complex/cyclosome (APC/C) substrates
Cited by: 38
Author(s): Mingwei Min, Ugo Mayor, Catherine Lindon
Software Mentions: 1
Published: about 13 years ago

10.1038/srep43417

Population genomics of an endemic Mediterranean fish: differentiation by fine scale dispersal and adaptation
Cited by: 66
Author(s): Carlos Carreras, Víctor Ordóñez, Lorenzo Zane, Claudia Kruschel, Ina Nasto, Enrique Macpherson, Marta Pascual
Software Mentions: 1
Published: over 9 years ago

10.1098/rsob.150190

Transcriptional and phenotypical heterogeneity of Trypanosoma cruzi cell populations
Cited by: 17
Author(s): Víctor Seco-Hidalgo, Luis Miguel De Pablos, Antonio Osuna
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep42165

Physiological and transcriptomic analyses reveal a response mechanism to cold stress in Santalum album L. leaves
Cited by: 55
Author(s): Xinhua Zhang, Jaime A. Teixeira da Silva, Meiyun Niu, Mingzhi Li, Chunmei He, Zhao Jian-Gao, Songjun Zeng, Jun Duan, Guohua Ma
Software Mentions: 1
Published: over 9 years ago

10.1038/srep40349

Characterization of two polyvalent phages infecting Enterobacteriaceae
Cited by: 96
Author(s): Sana Hamdi, Geneviève M. Rousseau, Simon J. Labrie, Denise M. Tremblay, Rim Kourda, Karim Ben Slama, Sylvain Moineau
Software Mentions: 1
Published: over 9 years ago

10.1038/srep39638

Single-cell analysis of differences in transcriptomic profiles of oocytes and cumulus cells at GV, MI, MII stages from PCOS patients
Cited by: 49
Author(s): Qiwei Liu, Yumei Li, Yun Feng, George Liu, Jieliang Ma, Yifei Li, Hui-Xian Xiang, Yao Ji, Yunxia Cao, Xiaowen Tong, Zhigang Xue
Software Mentions: 1
Published: over 9 years ago

10.1038/srep37088

Exosomes derived from embryonal and alveolar rhabdomyosarcoma carry differential miRNA cargo and promote invasion of recipient fibroblasts
Cited by: 37
Author(s): Sandra E. Ghayad, Ghina Rammal, Farah Ghamloush, Hussein Basma, Rihab Nasr, Mona Diab‐Assaf, Claude Chelala, Raya Saab
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep35669

Lipid remodelling in the reef-building honeycomb worm, Sabellaria alveolata, reflects acclimation and local adaptation to temperature
Cited by: 21
Author(s): Anna P. Muir, Flávia L. D. Nunes, Stanislas F. Dubois, Fabrice Pernet
Software Mentions: 1
Published: almost 10 years ago

10.3390/ijms22179513

Follistatin-Like-1 (FSTL1) Is a Fibroblast-Derived Growth Factor That Contributes to Progression of Chronic Kidney Disease
Cited by: 6
Author(s): Nicholas Maksimowski, Xuewen Song, Eun Hui Bae, Heather N. Reich, Rohan John, York Pei, James W. Scholey
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22179402

Comparative Proteomic Analysis of Tolerant and Sensitive Varieties Reveals That Phenylpropanoid Biosynthesis Contributes to Salt Tolerance in Mulberry
Cited by: 17
Author(s): Tiantian Gan, Ziwei Lin, Lijun Bao, Tian Hui, Xiaopeng Cui, Yanzhen Huang, Hexin Wang, Chao Su, Jiao Feng, Minjuan Zhang, Yonghua Qian
Software Mentions: 1
Published: about 5 years ago

10.1038/srep35688

Machine-learned pattern identification in olfactory subtest results
Cited by: 12
Author(s): Jörn Lötsch, Thomas Hummel, Alfred Ultsch
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep33706

Transcriptomic comparison between Brassica oleracea and rice (Oryza sativa) reveals diverse modulations on cell death in response to Sclerotinia sclerotiorum
Cited by: 8
Author(s): Jiaqin Mei, Yijuan Ding, Yuehua Li, Chaobo Tong, Hao Du, Yang Yu, Heng Wan, Qing Xiong, Jingyin Yu, Liu S, Jiana Li, Wei Qian
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep31745

Fine needle aspirate flow cytometric phenotyping characterizes immunosuppressive nature of the mesothelioma microenvironment
Cited by: 23
Author(s): Patrick H. Lizotte, Robert E. Jones, Lauren Keogh, Elena Ivanova, Hongye Liu, Mark M. Awad, Peter S. Hammerman, Ritu R. Gill, William G. Richards, David A. Barbie, Adam J. Bass, Raphael Bueno, Jessie M. English, Mark Bittinger, Kwok-Kin Wong
Software Mentions: 1
Published: about 10 years ago

10.1038/srep28327

Metatranscriptomics reveals the molecular mechanism of large granule formation in granular anammox reactor
Cited by: 35
Author(s): Samik Bagchi, Regina Lamendella, Steven Strutt, Mark C.M. van Loosdrecht, Pascal E. Saikaly
Software Mentions: 1
Published: about 10 years ago

10.1038/srep24967

Model-based genotype-phenotype mapping used to investigate gene signatures of immune sensitivity and resistance in melanoma micrometastasis
Cited by: 17
Author(s): Guido Santos, Светослав Николов, Xin Lai, Martin Eberhardt, Florian S. Dreyer, Sushmita Paul, Gerold Schuler, Julio Vera
Software Mentions: 1
Published: over 10 years ago

10.1098/rsob.200265

Ageing genetic signature of hypersomatotropism
Cited by: 0
Author(s): Abdalla Elbialy
Software Mentions: 1
Published: over 5 years ago

10.1038/srep21618

Correlations of Fecal Metabonomic and Microbiomic Changes Induced by High-fat Diet in the Pre-Obesity State
Cited by: 109
Author(s): Hong Lin, Yanpeng An, Fuhua Hao, Yulan Wang, Huiru Tang
Software Mentions: 1
Published: over 10 years ago

10.1038/srep21084

Serum microRNA microarray analysis identifies miR-4429 and miR-4689 are potential diagnostic biomarkers for biliary atresia
Cited by: 38
Author(s): Rui Dong, Zhen Shen, Chengchao Zheng, Gong Chen, Shan Zheng
Software Mentions: 1
Published: over 10 years ago

10.1038/srep15930

Chemogenomic profiling of Plasmodium falciparum as a tool to aid antimalarial drug discovery
Cited by: 35
Author(s): Anupam Pradhan, Geoffrey H. Siwo, Naresh Singh, Brian Martens, Bharath Balu, Katrina A. Button-Simons, Aiping Tan, Min Zhang, Kenneth O. Udenze, Rays H. Y. Jiang, Michael T. Ferdig, John Adams, Dennis E. Kyle
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep10932

Phenotypic diversity within a Pseudomonas aeruginosa population infecting an adult with cystic fibrosis
Cited by: 79
Author(s): Shawn T. Clark, Julio Diaz Caballero, Mary Cheang, Bryan Coburn, Pauline W. Wang, Sylva L. Donaldson, Yu Zhang, Mingyao Liu, Shaf Keshavjee, Yvonne Yau, Valerie Waters, D. Elizabeth Tullis, David S. Guttman, David Hwang
Software Mentions: 1
Published: over 11 years ago

10.18632/oncotarget.9076

Abundant PD-L1 expression in Epstein-Barr Virus-infected gastric cancers
Cited by: 228
Author(s): Sarah Derks, Xiaoyun Liao, Anna Maria Chiaravalli, Xiayu Xu, M. Constanza Camargo, Enrico Solcia, Fausto Sessa, Tania Fleitas, Gordon J. Freeman, Scott J. Rodig, Charles S. Rabkin, Adam J. Bass
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2017.01535

Insights on the Effects of Heat Pretreatment, pH, and Calcium Salts on Isolation of Rare Actinobacteria from Karstic Caves
Cited by: 48
Author(s): Bao‐Zhu Fang, Nimaichand Salam, Ming-Xian Han, Jian‐Yu Jiao, Juan Cheng, Du Wei, Min Xiao, Wenjun Li
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2016.01892

Waste Conversion into n-Caprylate and n-Caproate: Resource Recovery from Wine Lees Using Anaerobic Reactor Microbiomes and In-line Extraction
Cited by: 96
Author(s): Leo A. Kucek, Jiajie Xu, Mytien Nguyen, Largus T. Angenent
Software Mentions: 1
Published: almost 10 years ago

10.1111/jvh.12310

Elevated interferon-stimulated gene transcription in peripheral blood mononuclear cells occurs in patients infected with genotype 1 but not genotype 3 hepatitis C virus
Cited by: 6
Author(s): Mark W. Robinson, Rachael Swann, Alex Sigruener, Stephen T. Barclay, Peter R. Mills, John McLauchlan, Arvind H. Patel
Software Mentions: 1
Published: almost 12 years ago

10.3389/fimmu.2020.01474

Nicotine Changes the microRNA Profile to Regulate the FOXO Memory Program of CD8+ T Cells in Rheumatoid Arthritis
Cited by: 9
Author(s): Caroline Wasén, Caroline Ospelt, Alessandro Camponeschi, Malin C. Erlandsson, Karin Andersson, Sofia Töyrä Silfverswärd, Maria Bokarewa
Software Mentions: 1
Published: about 6 years ago

10.18632/oncotarget.12909

Hedgehog pathway dysregulation contributes to the pathogenesis of human gastrointestinal stromal tumors via GLI-mediated activation of KIT expression
Cited by: 26
Author(s): Chih Min Tang, Tracy E. Lee, Sabriya A. Syed, Adam M. Burgoyne, Samantha Leonard, Fei Gao, Jonathan C.H. Chan, Eileen Shi, Juliann Chmielecki, Deborah Morosini, Kai Wang, Jeffrey S. Ross, Michael L. Kendrick, Michael R. Bardsley, Martina De Siena, Junhao Mao, Olivier Harismendy, Tamás Ördög, Jason K. Sicklick
Software Mentions: 1
Published: almost 10 years ago

10.1128/JVI.00066-20

Characterization and Genomic Analysis of ValSw3-3, a New Siphoviridae Bacteriophage Infecting Vibrio alginolyticus
Cited by: 24
Author(s): Ling Chen, Quan Liu, Fan Jia, Tingwei Yan, Haoran Zhang, Jian Yang, Deng Deng, Chaolan Liu, Ting Wei, Yingfei Ma
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2017.00615

Gene Expression Profiling of Transcription Factors of Helicobacter pylori under Different Environmental Conditions
Cited by: 30
Author(s): Miguel A. De la Cruz, Miguel A. Ares, Kristine von Bargen, Leonardo G. Panunzi, Jessica Martínez-Cruz, Hilda‐Alicia Valdez‐Salazar, César Jiménez-Galicia, Javier Torres
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.14894

Inhibition of CDK8 mediator kinase suppresses estrogen dependent transcription and the growth of estrogen receptor positive breast cancer
Cited by: 91
Author(s): Martina S.J. McDermott, Alexander A. Chumanevich, Chang-Uk Lim, Jiaxin Liang, Mengqian Chen, Serena Altilia, David J. Oliver, James M. Rae, Michael Shtutman, Hippokratis Kiaris, Balázs Győrffy, Igor B. Roninson, Eugenia V. Broude
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2018.02639

Transcriptome and Proteome of Fish-Pathogenic Streptococcus agalactiae Are Modulated by Temperature
Cited by: 21
Author(s): Guilherme Campos Tavares, Alex F. Carvalho, Felipe Luiz Pereira, Cristiana Perdigão Rezende, Vasco Azevedo, Carlos Augusto Gomes Leal, Henrique César Pereira Figueiredo
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2021.654783

Reactive Oxygen Species-Related Ceftazidime Resistance Is Caused by the Pyruvate Cycle Perturbation and Reverted by Fe3 + in Edwardsiella tarda
Cited by: 8
Author(s): Jingzhou Ye, Yubin Su, Xuan‐xian Peng, Hui Li
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.16320

Targeting the PIM protein kinases for the treatment of a T-cell acute lymphoblastic leukemia subset
Cited by: 32
Author(s): Megha Padi, Libia A. Luevano, Ningfei An, Ritu Pandey, Neha Singh, Jin H. Song, Jon C. Aster, Xue-Zhong Yu, Shikhar Mehrotra, Andrew S. Kraft
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2017.02300

Bacterial Community Dynamics in Dichloromethane-Contaminated Groundwater Undergoing Natural Attenuation
Cited by: 22
Author(s): Justin Wright, Veronica Kirchner, W. Bernard, Nikea Ulrich, Christopher J. McLimans, Maria Fernanda Campa, Terry C. Hazen, Tamzen W. Macbeth, David Marabello, Jacob McDermott, Rachel Mackelprang, Kimberly A. Roth, Regina Lamendella
Software Mentions: 1
Published: almost 9 years ago

10.3389/fmicb.2018.01244

Comparative Genomics of Lactobacillus acidipiscis ACA-DC 1533 Isolated From Traditional Greek Kopanisti Cheese Against Species Within the Lactobacillus salivarius Clade
Cited by: 17
Author(s): Μαρία Κάζου, Voula Alexandraki, Jochen Blom, Bruno Pot, Effie Tsakalidou, Konstantinos Papadimitriou
Software Mentions: 1
Published: about 8 years ago

10.3389/fimmu.2019.01229

Differential Proinflammatory Signature in Vestibular Migraine and Meniere Disease
Cited by: 50
Author(s): Marisa Flook, Lidia Frejo, Alvaro Gallego‐Martinez, Eduardo Martín-Sanz, Marcos Rossi-Izquierdo, Juan Carlos Amor-Dorado, Andrés Soto-Varela, Sofía Santos-Pérez, Ángel Batuecas‐Caletrío, Juan Manuel Espinosa-Sánchez, Patricia Pérez-Carpena, Marta Martínez-Martínez, Ismael Arán, José A. Lopez-Escamez
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.17564

Overexpression of a novel candidate oncogene KIF14 correlates with tumor progression and poor prognosis in prostate cancer
Cited by: 38
Author(s): Yixiang Zhang, Yeqing Yuan, Peidong Liang, Zhaoxia Zhang, Xiaojing Guo, Ligang Xia, Yingying Zhao, Xing-sheng Shu, Song Sun, Ying Ying, Yingduan Cheng
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.18664

miR-331-3p and Aurora Kinase inhibitor II co-treatment suppresses prostate cancer tumorigenesis and progression
Cited by: 19
Author(s): Michael R. Epis, Keith M. Giles, Dianne J. Beveridge, Kirsty Richardson, Patrick A. Candy, Lisa M. Stuart, Jacqueline M. Bentel, Ronald J. Cohen, Peter J. Leedman
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2017.01534

Independent Shifts of Abundant and Rare Bacterial Populations across East Antarctica Glacial Foreland
Cited by: 24
Author(s): Wenkai Yan, Hongmei Ma, Guitao Shi, Yuansheng Li, Bo Sun, Xiang Xiao, Yu Zhang
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2020.585614

Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in the Phytopathogenic Fungus Botrytis cinerea
Cited by: 9
Author(s): Yang Xu, Xiaoxia Li, Wenxing Liang, Mengjie Liu
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12967-016-0855-3

Testing chemotherapy efficacy in HER2 negative breast cancer using patient-derived spheroids
Cited by: 37
Author(s): Kathrin Halfter, Oliver Hoffmann, Nina Ditsch, Mareike Ahne, Frank Arnold, Stefan Paepke, Dieter Grab, Ingo Bauerfeind, Barbara Mayer
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2017.00659

The Anti-Adhesive Effect of Curcumin on Candida albicans Biofilms on Denture Materials
Cited by: 56
Author(s): Hasanain K. A. Alalwan, Ranjith Rajendran, David F. Lappin, Emilie Combet, Muhammad Shahzad, Douglas Robertson, Christopher J. Nile, Craig Williams, Gordon Ramage
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.10479

Synthetic lethal genetic interactions between Rad54 and PARP-1 in mouse development and oncogenesis
Cited by: 2
Author(s): Mirella Tanori, Arianna Casciati, Francesco Berardinelli, Simona Leonardi, Emanuela Pasquali, Francesca Antonelli, Barbara Tanno, Paola Giardullo, Alessandro Pannicelli, Gabriele Babini, Ilaria De Stefano, Antonella Sgura, Mariateresa Mancuso, Anna Saran, Simonetta Pazzaglia
Software Mentions: 1
Published: about 10 years ago

10.3389/fimmu.2020.590121

Maturation of Monocyte-Derived DCs Leads to Increased Cellular Stiffness, Higher Membrane Fluidity, and Changed Lipid Composition
Cited by: 21
Author(s): Jennifer J. Lühr, Nils Alex, Lukas Amon, Martin Kräter, Markéta Kubánková, Erdinç Sezgin, Christian Lehmann, Lukas Heger, Gordon F. Heidkamp, Ana‐Sunčana Smith, Vasily Zaburdaev, Rainer A. Böckmann, Ilya Levental, Michael L. Dustin, Christian Eggeling, Jochen Guck, Diana Dudziak
Software Mentions: 1
Published: almost 6 years ago

10.3390/nu12113252

Bilberry Anthocyanins Ameliorate NAFLD by Improving Dyslipidemia and Gut Microbiome Dysbiosis
Cited by: 33
Author(s): Hironobu Nakano, Shusong Wu, Kozue Sakao, Taichi Hara, Jianhua He, Santos García, Kalidas Shetty, De‐Xing Hou
Software Mentions: 1
Published: almost 6 years ago

10.18632/oncotarget.22839

Polycomb protein RING1A limits hematopoietic differentiation in myelodysplastic syndromes
Cited by: 5
Author(s): Anna M. Palau, Anne-Kathrin Garz, Jeannine Diesch, Anabel Zwick, Roberto Malinverni, Vanesa Valero, Katrina M. Lappin, Raquel Casquero, Andreas Lennartsson, Johannes Zuber, Tomàs Navarro, Ken Mills, Katharina Götze, Marcus Buschbeck
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12967-015-0605-y

Altered microRNAs expression profiling in cumulus cells from patients with polycystic ovary syndrome
Cited by: 48
Author(s): Suying Liu, Xuan Zhang, Changgen Shi, Jimin Lin, Guowu Chen, Bin Wu, Ligang Wu, Huijuan Shi, Yuan Yao, Weijin Zhou, Zilong Sun, Xi Dong, Jian Wang
Software Mentions: 1
Published: about 11 years ago

10.7554/eLife.39981

Molecular pathway analysis towards understanding tissue vulnerability in spinocerebellar ataxia type 1
Cited by: 26
Author(s): Terri M. Driessen, Jong Seo Lee, Janghoo Lim
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-23090-2

A proteomic insight into vitellogenesis during tick ovary maturation
Cited by: 26
Author(s): Marina Amaral Xavier, Lucas Tirloni, Antônio Frederico Michel Pinto, Jolene K. Diedrich, John R. Yates, Albert Mulenga, Carlos Logullo, Itabajara da Silva Vaz, Adriana Seixas, Carlos Termignoni
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-21591-8

In silico guided reconstruction and analysis of ICAM-1-binding var genes from Plasmodium falciparum
Cited by: 4
Author(s): Eilidh Carrington, Thomas D. Otto, Tadge Szestak, Frank Lennartz, Matthew K. Higgins, Chris Newbold, Alister G. Craig
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms18040751

Exploring the Genetic Resistance to Gastrointestinal Nematodes Infection in Goat Using RNA-Sequencing
Cited by: 20
Author(s): Ali Akbar Bhuiyan, Jingjin Li, Zhenyang Wu, Peihong Ni, Adeyinka Abiola Adetula, Haiyan Wang, Cheng Zhang, Xiaohui Tang, Anjuman Ara Bhuyan, Zhao Song, Xiaoyong Du
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.23406

Menopause and adipose tissue: miR-19a-3p is sensitive to hormonal replacement
Cited by: 22
Author(s): Reeta Kangas, Cristina Morsiani, G Pizza, Catia Lanzarini, Pauliina Aukee, Jaakko Kaprio, Sarianna Sipilä, Claudio Franceschi, Vuokko Kovanen, Eija K. Laakkonen, Miriam Capri
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2018.01970

Metabolic Reprogramming of Clostridioides difficile During the Stationary Phase With the Induction of Toxin Production
Cited by: 60
Author(s): Julia Hofmann, Andreas Otto, Mareike Berges, Rebekka Biedendieck, Annika-Marisa Michel, Dörte Becher, Dieter Jahn, Meina Neumann‐Schaal
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2018.02056

1-Methyltryptophan Modifies Apoplast Content in Tomato Plants Improving Resistance Against Pseudomonas syringae
Cited by: 6
Author(s): Loredana Scalschi, Eugenio Llorens, Ana Isabel González-Hernández, M. Valcárcel, Jordi Gamir, Pilar García‐Agustín, Begonya Vicedo, Gemma Camañes
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2018.00099

iTRAQ-Based Comparative Proteomic Analysis of Adult Schistosoma japonicum from Water Buffalo and Yellow Cattle
Cited by: 13
Author(s): Qixiao Zhai, Zhiqiang Fu, Yang Hong, Xianjun Yu, Qian Han, Lu Ke, Hao Li, Xuefeng Dou, Chuangang Zhu, Jinming Liu, Jiaojiao Lin, Guoqing Li
Software Mentions: 1
Published: over 8 years ago

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Papers Mentioning gplots 2,122