Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: gplots

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/gplots

Various R Programming Tools for Plotting Data
35 versions
Latest release: over 2 years ago
156 dependent packages
97,747 downloads last month

Papers Mentioning gplots 2,122

10.1155/2020/5849323
Proteomic Analysis of Human Esophageal Cancer Using Tandem Mass Tag Quantifications
Cited by: 6
Author(s): Suofeng Sun, Huijuan Zhang, Yu Wang, Jing Gao, Shen Zhou, Yuan Li, Sun‐Young Han, Xiuling Li, Jian Li
Software Mentions: 1
Published: over 4 years ago
10.1186/s13293-015-0044-8
Large-scale transcriptome sequencing reveals novel expression patterns for key sex-related genes in a sex-changing fish
Cited by: 74
Author(s): Hui Liu, Melissa S. Lamm, Kim Rutherford, Michael A. Black, John Godwin, Neil J. Gemmell
Software Mentions: 1
Published: almost 9 years ago
10.1186/s12967-015-0605-y
Altered microRNAs expression profiling in cumulus cells from patients with polycystic ovary syndrome
Cited by: 48
Author(s): Suying Liu, Xuan Zhang, Changgen Shi, Jimin Lin, Guowu Chen, Bin Wu, Ligang Wu, Huijuan Shi, Yuan Yao, Weijin Zhou, Zilong Sun, Xi Dong, Jian Wang
Software Mentions: 1
Published: over 9 years ago
10.1242/bio.20148193
Autocrine Activation of the Wnt/β-Catenin Pathway by CUX1 and GLIS1 in Breast Cancers
Cited by: 34
Author(s): Charles Vadnais, Peiman Shooshtarizadeh, Charles V. Rajadurai, Robert Lesurf, Laura Hulea, Sayeh Davoudi, C. Linn Cadieux, Michael Hallett, Morag Park, Alain Nepveu
Software Mentions: 1
Published: about 10 years ago
10.3897/BDJ.9.e60980
Patterns of richness, diversity and abundance of an odonate assemblage from a tropical dry forest in the Santiago Dominguillo Region, Oaxaca, México (Insecta: Odonata)
Cited by: 0
Author(s): Enrique González-Soriano, Felipe A. Noguera, Cisteil X. Pérez-Hernández, Santiago Zaragoza‐Caballero, Leonardo González-Valencia
Software Mentions: 1
Published: over 3 years ago
10.1186/s12917-017-1157-6
OmpA protein sequence-based typing and virulence-associated gene profiles of Pasteurella multocida isolates associated with bovine haemorrhagic septicaemia and porcine pneumonic pasteurellosis in Thailand
Cited by: 5
Author(s): Teerasak E-kobon, Ratiporn Leeanan, Saengtian Pannoi, Pornchai Anuntasomboon, Pacharee Thongkamkoon, Arinthip Thamchaipenet
Software Mentions: 1
Published: over 7 years ago
10.3390/ijms18040751
Exploring the Genetic Resistance to Gastrointestinal Nematodes Infection in Goat Using RNA-Sequencing
Cited by: 20
Author(s): Ali Akbar Bhuiyan, Jingjin Li, Zhenyang Wu, Peihong Ni, Adeyinka Abiola Adetula, Haiyan Wang, Cheng Zhang, Xiaohui Tang, Anjuman Ara Bhuyan, Zhao Song, Xiaoyong Du
Software Mentions: 1
Published: over 7 years ago
10.3389/fpls.2017.00946
Genome-Wide Identification of AP2/ERF Transcription Factors in Cauliflower and Expression Profiling of the ERF Family under Salt and Drought Stresses
Cited by: 57
Author(s): Hui Li, Yu Wang, Mei Wu, Lihong Li, Cong Liu, Zhanpin Han, Jiye Yuan, Chengbin Chen, Wenqin Song, Chunguo Wang
Software Mentions: 1
Published: over 7 years ago
10.18632/oncotarget.23406
Menopause and adipose tissue: miR-19a-3p is sensitive to hormonal replacement
Cited by: 22
Author(s): Reeta Kangas, Cristina Morsiani, G Pizza, Catia Lanzarini, Pauliina Aukee, Jaakko Kaprio, Sarianna Sipilä, Claudio Franceschi, Vuokko Kovanen, Eija K. Laakkonen, Miriam Capri
Software Mentions: 1
Published: almost 7 years ago
10.3389/fpls.2020.563240
Different Age-Induced Changes in Rhizosphere Microbial Composition and Function of Panax ginseng in Transplantation Mode
Cited by: 14
Author(s): Qiuxia Wang, Huifeng Sun, Meijia Li, Chenglu Xu, Yayu Zhang
Software Mentions: 1
Published: about 4 years ago
10.3389/fpls.2021.641678
Specificity and Plasticity of the Functional Ionome of Brassica napus and Triticum aestivum Exposed to Micronutrient or Beneficial Nutrient Deprivation and Predictive Sensitivity of the Ionomic Signatures
Cited by: 9
Author(s): Aurélien D’Oria, Galatéa Courbet, Aurélia Lornac, Sylvain Pluchon, Mustapha Arkoun, Anne Maillard, Philippe Étienne, Sylvain Diquélou, Alain Ourry
Software Mentions: 1
Published: almost 4 years ago
10.3389/fphys.2015.00253
Vaginal biogenic amines: biomarkers of bacterial vaginosis or precursors to vaginal dysbiosis?
Cited by: 99
Author(s): Tiffanie M. Nelson, Joanna-Lynn C. Borgogna, Rebecca M. Brotman, Jacques Ravel, Seth T. Walk, Carl J. Yeoman
Software Mentions: 1
Published: about 9 years ago
10.3389/fphys.2021.683651
ETS1, ELK1, and ETV4 Transcription Factors Regulate Angiopoietin-1 Signaling and the Angiogenic Response in Endothelial Cells
Cited by: 5
Author(s): Sharon Harel, Verónica Sánchez, Alaa Moamer, Javier E. Sanchez-Galán, Mohammad N Abid Hussein, Dominique Mayaki, Mathieu Blanchette, Sabah N. A. Hussain
Software Mentions: 1
Published: over 3 years ago
10.3389/fphys.2021.690185
Comparative Genomics Provide Insights Into Function and Evolution of Odorant Binding Proteins in Cydia pomonella
Cited by: 3
Author(s): Cong Huang, Xue Zhang, Dalin He, Qiang Wu, Rui Tang, Longsheng Xing, Wan‐Xue Liu, Wenkai Wang, Bo Liu, Yu X, Yang Ni, Fanghao Wan, Wanqiang Qian
Software Mentions: 1
Published: over 3 years ago
10.3389/fpls.2015.00661
RNA-Seq analysis identifies key genes associated with haustorial development in the root hemiparasite Santalum album
Cited by: 38
Author(s): Xinhua Zhang, Oliver Berkowitz, Jaime A. Teixeira da Silva, Muhan Zhang, Guohua Ma, James Whelan, Jun Duan
Software Mentions: 1
Published: about 9 years ago
10.3389/fphys.2018.01399
Proteomic Responses Under Cold Stress Reveal Unique Cold Tolerance Mechanisms in the Pacific White Shrimp (Litopenaeus vannamei)
Cited by: 15
Author(s): J. Peng, Pingping He, Pinyuan Wei, Bin Zhang, Yang Zhao, Qiangyong Li, Xiuli Chen, Min Peng, Dingyuan Zeng, Chunling Yang
Software Mentions: 1
Published: about 6 years ago
10.3389/fonc.2019.00930
Phospho-Protein Arrays as Effective Tools for Screening Possible Targets for Kinase Inhibitors and Their Use in Precision Pediatric Oncology
Cited by: 7
Author(s): Jakub Neradil, Michal Kýr, Kristýna Polášková, Leoš Křen, Petra Macigova, J. Škoda, Jaroslav Štěrba, Renata Veselská
Software Mentions: 1
Published: about 5 years ago
10.1128/AEM.01993-19
Comparative Genomics of Rumen <i>Butyrivibrio</i> spp. Uncovers a Continuum of Polysaccharide-Degrading Capabilities
Cited by: 54
Author(s): Nikola Palevich, William J. Kelly, Sinead C. Leahy, Stuart E. Denman, Eric Altermann, Jasna Rakonjac, Graeme T. Attwood
Software Mentions: 1
Published: almost 5 years ago
10.3389/fonc.2020.562253
Long Noncoding RNA LOC400043 (LINC02381) Inhibits Gastric Cancer Progression Through Regulating Wnt Signaling Pathway
Cited by: 28
Author(s): Meisam Jafarzadeh, Bahram Mohammad Soltani
Software Mentions: 1
Published: about 4 years ago
10.3389/fonc.2021.691500
A Newly Identified lncBCAS1-4_1 Associated With Vitamin D Signaling and EMT in Ovarian Cancer Cells
Cited by: 3
Author(s): Yi Xue, Ping Wang, Fei Jiang, Jie Yu, Hongmei Ding, Zengli Zhang, Hailong Pei, Bingyan Li
Software Mentions: 1
Published: over 3 years ago
10.3389/fpls.2017.00404
Small RNA Sequencing Reveals Differential miRNA Expression in the Early Development of Broccoli (Brassica oleracea var. italica) Pollen
Cited by: 8
Author(s): Hui Li, Yu Wang, Mei Wu, Lihong Li, Chuan Jin, Qingli Zhang, Chengbin Chen, Wenqin Song, Chunguo Wang
Software Mentions: 1
Published: over 7 years ago
10.3389/fonc.2019.01054
Identification of Candidate Biomarkers and Analysis of Prognostic Values in Oral Squamous Cell Carcinoma
Cited by: 48
Author(s): Guangzhao Huang, Qimeng Wu, Zenan Zheng, Ting-ru Shao, Xiaoyang Lv
Software Mentions: 1
Published: about 5 years ago
10.3389/fnins.2019.01365
Tryptophan Metabolism by Gut Microbiome and Gut-Brain-Axis: An in silico Analysis
Cited by: 164
Author(s): Harrisham Kaur, Chandrani Bose, Sharmila S. Mande
Software Mentions: 1
Published: almost 5 years ago
10.3389/fnins.2018.00220
Transcriptional Profiling of Ligand Expression in Cell Specific Populations of the Adult Mouse Forebrain That Regulates Neurogenesis
Cited by: 11
Author(s): Kasum Azim, Rainer Akkermann, Martina Cantone, Julio Vera, Janusz Jadasz, Patrick Küry
Software Mentions: 1
Published: over 6 years ago
10.3389/fnmol.2021.665931
Transcriptome Analysis Reveals the Role of Cellular Calcium Disorder in Varicella Zoster Virus-Induced Post-Herpetic Neuralgia
Cited by: 13
Author(s): Songbin Wu, Shaomin Yang, Mingxi Ou, Jiamin Chen, Jinbo Huang, Dehua Xiong, Wuping Sun, Lizu Xiao
Software Mentions: 1
Published: over 3 years ago
10.3389/fpls.2017.01062
The C4 Model Grass Setaria Is a Short Day Plant with Secondary Long Day Genetic Regulation
Cited by: 16
Author(s): Andrew N. Doust, Margarita Mauro-Herrera, John G. Hodge, Jessica Stromski
Software Mentions: 1
Published: over 7 years ago
10.3389/fpls.2020.01264
Rootstock–Scion Interaction Affects Cadmium Accumulation and Tolerance of Malus
Cited by: 19
Author(s): Jun He, Jiangtao Zhou, Huixue Wan, Xiaolei Zhuang, Huifeng Li, Sijun Qin, Deguo Lyu
Software Mentions: 1
Published: over 4 years ago
10.3389/fnmol.2013.00049
Genome-wide assessment of post-transcriptional control in the fly brain
Cited by: 8
Author(s): Shaul Mezan, Reut Ashwal-Fluss, Rom Shenhav, Manuel Garber, Sebastián Kadener
Software Mentions: 1
Published: almost 12 years ago
10.3389/fpls.2019.00509
Pinus Susceptibility to Pitch Canker Triggers Specific Physiological Responses in Symptomatic Plants: An Integrated Approach
Cited by: 16
Author(s): Joana Amaral, Bárbara Correia, Carla António, Ana Margarida Rodrigues, Aurelio Gómez-Cádenas, Luís Valledor, Robert D. Hancock, Artur Alves, Glória Pinto
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2021.619711
Soil Disturbance Affects Plant Productivity via Soil Microbial Community Shifts
Cited by: 7
Author(s): Taylor J. Seitz, Ursel M. E. Schütte, Devin M. Drown
Software Mentions: 1
Published: almost 4 years ago
10.3389/fmicb.2017.01459
Comparative Sequence Analysis of Multidrug-Resistant IncA/C Plasmids from Salmonella enterica
Cited by: 27
Author(s): Maria Hoffmann, James B. Pettengill, Narjol González-Escalona, John N. Miller, Sherry Ayers, Shaohua Zhao, Marc W. Allard, Patrick F. McDermott, Eric W. Brown, Steven R. Monday
Software Mentions: 1
Published: over 7 years ago
10.3389/fimmu.2019.02633
Constitutive Activation of Natural Killer Cells in Primary Biliary Cholangitis
Cited by: 12
Author(s): Theresa Hydes, Matthew D. Blunt, Jennifer Naftel, Andrés F. Vallejo, Grégory Seumois, Alice Wang, Pandurangan Vijayanand, Marta E. Polak, Salim I. Khakoo
Software Mentions: 1
Published: about 5 years ago
10.3389/fimmu.2018.02545
Identification of CVID Patients With Defects in Immune Repertoire Formation or Specification
Cited by: 22
Author(s): Pauline A. van Schouwenburg, Hanna IJspeert, Ingrid Pico-Knijnenburg, Virgil A. S. H. Dalm, P. Martin van Hagen, David van Zessen, Andrew Stubbs, Smita Y. Patel, Mirjam van der Burg
Software Mentions: 1
Published: almost 6 years ago
10.3389/fimmu.2018.00704
One-Year Follow-Up of Natural Killer Cell Activity in Multiple Myeloma Patients Treated With Adjuvant Lenalidomide Therapy
Cited by: 14
Author(s): Laurie Besson, Emily Charrier, Lionel Karlin, Omran Allatif, Antoine Marçais, Paul Rouzaire, Lucie Belmont, Michel Attal, Christine Lombard, Gilles Salles, Thierry Walzer, Sébastien Viel
Software Mentions: 1
Published: over 6 years ago
10.3389/fimmu.2021.638020
The First Contact of Human Dendritic Cells With Trypanosoma cruzi Reveals Response to Virus as an Unexplored Central Pathway
Cited by: 2
Author(s): Natalia Gil-Jaramillo, Amanda Pereira Rocha, Tainá Raiol, Flávia Nader Motta, Cecília Favali, Marcelo M. Brígido, Izabela Marques Dourado Bastos, Jaime M. Santana
Software Mentions: 1
Published: over 3 years ago
10.3389/fpls.2018.00760
Metabolomics of Early Stage Plant Cell–Microbe Interaction Using Stable Isotope Labeling
Cited by: 30
Author(s): Qiuying Pang, Tong Zhang, Yan Wang, Wenwen Kong, Qijie Guan, Xiufeng Yan, Sixue Chen
Software Mentions: 1
Published: over 6 years ago
10.3389/fpls.2019.01450
Effects of In Vitro Polyploidization on Agronomic Characteristics and Fruit Carotenoid Content; Implications for Banana Genetic Improvement
Cited by: 8
Author(s): Delphine Amah, Angeline van Biljon, Busie Maziya‐Dixon, Maryke Labuschagne, Rony Swennen
Software Mentions: 1
Published: about 5 years ago
10.1093/aobpla/plw051
Reproductive traits affect the rescue of valuable and endangered multipurpose tropical trees
Cited by: 4
Author(s): Viviane C.O. Sinébou, Muriel Quinet, B. C. Ahohuendo, Anne‐Laure Jacquemart
Software Mentions: 1
Published: over 9 years ago
10.3389/fimmu.2018.00744
CLEC10A Is a Specific Marker for Human CD1c+ Dendritic Cells and Enhances Their Toll-Like Receptor 7/8-Induced Cytokine Secretion
Cited by: 86
Author(s): Lukas Heger, Silke Balk, Jennifer J. Lühr, Gordon F. Heidkamp, Christian Lehmann, Lukas Hatscher, Ariawan Purbojo, Arndt Hartmann, Fayna García-Martín, Shin‐Ichiro Nishimura, Robert Cesnjevar, Falk Nimmerjahn, Diana Dudziak
Software Mentions: 1
Published: over 6 years ago
10.3389/fimmu.2017.02004
Monocytes Differentiate to Immune Suppressive Precursors of Metastasis-Associated Macrophages in Mouse Models of Metastatic Breast Cancer
Cited by: 113
Author(s): Takanori Kitamura, Dahlia Doughty-Shenton, Luca Cassetta, Stamatina Fragkogianni, Demi Brownlie, Yu Kato, Neil O. Carragher, Jeffrey W. Pollard
Software Mentions: 1
Published: almost 7 years ago
10.3389/fgene.2021.633756
EZH2-Mediated microRNA-375 Upregulation Promotes Progression of Breast Cancer via the Inhibition of FOXO1 and the p53 Signaling Pathway
Cited by: 19
Author(s): Xin Guan, Aiping Shi, Yabin Zou, Meiyang Sun, Yue Zhan, Yi Dong, Zhimin Fan
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2020.00873
Dissecting the Molecular Function of Triticum aestivum STI Family Members Under Heat Stress
Cited by: 10
Author(s): Shaloo Meena, Sohini Deb, Harsha Samtani, Paramjit Khurana
Software Mentions: 1
Published: over 4 years ago
10.3389/fendo.2021.598656
Seven Novel Genes Related to Cell Proliferation and Migration of VHL-Mutated Pheochromocytoma
Cited by: 6
Author(s): Shuai Gao, Longfei Liu, Zhuolin Li, Yingxian Pang, Jiaqi Shi, Fenlu Zhu
Software Mentions: 1
Published: over 3 years ago
10.3390/antiox8050120
Cell-Type Specific Analysis of Selenium-Related Genes in Brain
Cited by: 14
Author(s): Alexandru R. Sasuclark, Vedbar S. Khadka, Michael R. Pitts
Software Mentions: 1
Published: over 5 years ago
10.1186/s13104-021-05746-x
Distinctive prokaryotic microbiomes in sympatric plant roots from a Yucatan cenote
Cited by: 0
Author(s): Alejandra Escobar‐Zepeda, Patricia Rosas-Escobar, Laura Márquez-Valdelamar, Patricia De La Torre, Laila P. Partida‐Martínez, Ruben Remegaldo, Alejandro Sánchez-Flores, Fredd Vergara
Software Mentions: 1
Published: about 3 years ago
10.3389/fchem.2021.659583
The Impact of Nutritional Supplementation on Sweat Metabolomic Content: A Proof-of-Concept Study
Cited by: 3
Author(s): Sean W. Harshman, Andrew B. Browder, Christina N. Davidson, Rhonda L. Pitsch, Kraig E. Strayer, Nicole M. Schaeublin, Mandy S. Phelps, Maegan L. O’Connor, Nicholas S. Mackowski, Kristyn N. Barrett, Jason J. Eckerle, Adam J. Strang, Jennifer A. Martin
Software Mentions: 1
Published: over 3 years ago
10.3389/fncel.2015.00079
Identification and characterization of mouse otic sensory lineage genes
Cited by: 37
Author(s): Byron H. Hartman, Robert Durruthy-Durruthy, Roman D. Laske, Steven Losorelli, Stefan Heller
Software Mentions: 1
Published: over 9 years ago
10.1186/s12890-020-01232-5
Combined signaling of NF-kappaB and IL-17 contributes to Mesenchymal stem cells-mediated protection for Paraquat-induced acute lung injury
Cited by: 8
Author(s): Lichun Zhang, Yu Wang, Haitao Shen, Min Zhao
Software Mentions: 1
Published: over 4 years ago
10.1534/g3.115.022137
MicroRNA Maturation and MicroRNA Target Gene Expression Regulation Are Severely Disrupted in Soybean<i>dicer-like1</i>Double Mutants
Cited by: 20
Author(s): Shaun J. Curtin, Jean Michel Michno, Ben Campbell, Javier Gil-Humanes, Sandra M. Mathioni, Reza Hammond, Juan J. Gutiérrez-González, Ryan C. Donohue, Michael B. Kantar, Andrew L. Eamens, Blake C. Meyers, Daniel F. Voytas, Robert M. Stupar
Software Mentions: 1
Published: almost 9 years ago
10.3389/fncel.2019.00181
Phagocytosis of Apoptotic Cells Is Specifically Upregulated in ApoE4 Expressing Microglia in vitro
Cited by: 22
Author(s): Christiane Muth, A. Hartmann, Diego Sepúlveda-Falla, Markus Glatzel, Susanne Krasemann
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms19113438
Identification of Soybean Genes Whose Expression is Affected by the Ensifer fredii HH103 Effector Protein NopP
Cited by: 15
Author(s): Jinhui Wang, Jieqi Wang, Chunyan Liu, Chao Ma, Changyu Li, Yongqian Zhang, Zhaoming Qi, Rong Zhu, Yan Shi, Jianan Zou, Qingying Li, Junjie Zhu, Yan Wen, Zhijun Sun, Hanxi Liu, Hongwei Jiang, Zhan Yin, Zhenbang Hu, Qingshan Chen, Xiaoxia Wu, Dawei Xin
Software Mentions: 1
Published: about 6 years ago
10.3389/fcimb.2020.525335
Integrative and Conjugative Elements of Helicobacter pylori Are Hypothetical Virulence Factors Associated With Gastric Cancer
Cited by: 6
Author(s): Eduardo Mucito-Varela, Gonzalo Castillo-Rojas, Juan J. Calva, Yolanda López‐Vidal
Software Mentions: 1
Published: about 4 years ago
10.3389/fcimb.2016.00111
Recombination Is a Major Driving Force of Genetic Diversity in the Anaplasmataceae Ehrlichia ruminantium
Cited by: 15
Author(s): Nídia Cangi, Jonathan Gordon, Laure Bournez, Valérie Pinarello, Rosalie Aprelon, Karine Huber, Thierry Lefrançois, Luís Neves, Damien Meyer, Nathalie Vachiéry
Software Mentions: 1
Published: about 8 years ago
10.3389/fcimb.2017.00517
Tick-Host Range Adaptation: Changes in Protein Profiles in Unfed Adult Ixodes scapularis and Amblyomma americanum Saliva Stimulated to Feed on Different Hosts
Cited by: 54
Author(s): Lucas Tirloni, Tae Kyoung Kim, Antônio Frederico Michel Pinto, John R. Yates, Itabajara da Silva Vaz, Albert Mulenga
Software Mentions: 1
Published: almost 7 years ago
10.3389/fcimb.2016.00177
ExsE Is a Negative Regulator for T3SS Gene Expression in Vibrio alginolyticus
Cited by: 14
Author(s): Jinxin Liu, Shao-Yeh Lu, Lisa H. Orfe, Chen Ren, Chaoqun Hu, Douglas R. Call, Johannetsy J. Avillan, Zhe Zhao
Software Mentions: 1
Published: almost 8 years ago
10.1534/g3.119.400348
Correlating Genotype and Phenotype in the Asexual Yeast <i>Candida orthopsilosis</i> Implicates <i>ZCF29</i> in Sensitivity to Caffeine
Cited by: 7
Author(s): Kontxi Martinez de San Vicente, Markus S. Schröder, Lisa Lombardi, Elise Iracane, Geraldine Butler
Software Mentions: 1
Published: about 5 years ago
10.3389/fcell.2020.567028
Protein Lysine Acetylation in Ovarian Granulosa Cells Affects Metabolic Homeostasis and Clinical Presentations of Women With Polycystic Ovary Syndrome
Cited by: 21
Author(s): Zheying Min, Xiaoyü Li, Haiquan Zhao, Xiumei Zhang, Rong Li, Mo Li, Yong Fan, Yang Yu, Yue Zhao, Jie Qiao
Software Mentions: 1
Published: about 4 years ago
10.1534/g3.120.401735
Gene Copy Number Variation Does Not Reflect Structure or Environmental Selection in Two Recently Diverged California Populations of <i>Suillus brevipes</i>
Cited by: 1
Author(s): Anna Bazzicalupo, Mallory Thomas, Robert M. Mason, Munro-Ehrlich, Sara Branco
Software Mentions: 1
Published: almost 4 years ago
10.3389/fcell.2020.571948
The Adipose Microenvironment Dysregulates the Mammary Myoepithelial Cells and Could Participate to the Progression of Breast Cancer
Cited by: 10
Author(s): Laëtitia Delort, Juliette Cholet, Caroline Decombat, Marion Vermerie, Charles Dumontet, Florence Castelli, François Fenaille, Céline Auxenfans, Adrien Rossary, Florence Caldefie-Chézet
Software Mentions: 1
Published: almost 4 years ago
10.3389/fcell.2015.00015
Epigenetic reprogramming and re-differentiation of a Ewing sarcoma cell line
Cited by: 21
Author(s): Joseph B. Moore, David M. Loeb, Kyung U. Hong, Poul H. Sorensen, Timothy J. Triche, David W. Lee, Michael I. Barbato, Robert J. Arceci
Software Mentions: 1
Published: over 9 years ago
10.3390/genes10060444
Methylome-Wide Association Study in Peripheral White Blood Cells Focusing on Central Obesity and Inflammation
Cited by: 13
Author(s): Ana Arpón, Fermı́n I. Milagro, Omar Ramos-López, María L. Mansego, José Ignacio Riezu-Boj, J. Alfredo Martínéz
Software Mentions: 1
Published: over 5 years ago
10.1186/s12870-021-03019-0
Comparative transcriptome analysis reveals distinct gene expression profiles in Brachypodium distachyon infected by two fungal pathogens
Cited by: 4
Author(s): Guijie Zhu, Chengyu Gao, Chenyu Wu, Mu Li, Jin‐Rong Xu, Huiquan Liu, Qinhu Wang
Software Mentions: 1
Published: over 3 years ago
10.3390/foods9030349
Sensory Improvement of a Pea Protein-Based Product Using Microbial Co-Cultures of Lactic Acid Bacteria and Yeasts
Cited by: 60
Author(s): Cynthia El Youssef, Pascal Bonnarme, Sébastien Fraud, Anne-Claire Péron, Sandra Hélinck, Sophie Landaud
Software Mentions: 1
Published: over 4 years ago
10.3390/genes11070813
Sensing, Signaling, and Secretion: A Review and Analysis of Systems for Regulating Host Interaction in Wolbachia
Cited by: 19
Author(s): Amelia R.I. Lindsey
Software Mentions: 1
Published: over 4 years ago
10.3390/foods9010017
Benefits of the Use of Lactic Acid Bacteria Starter in Green Cracked Cypriot Table Olives Fermentation
Cited by: 12
Author(s): Dimitrios A. Anagnostopoulos, Vlasios Goulas, Eleni Xenofontos, Christos Vouras, Nikolaos Nikoloudakis, Dimitrios Tsaltas
Software Mentions: 1
Published: almost 5 years ago
10.1002/2211-5463.12343
A standardized fold change method for microarray differential expression analysis used to reveal genes involved in acute rejection in murine allograft models
Cited by: 1
Author(s): Weichen Zhou, Yi Wang, Masayuki Fujino, Leming Shi, Li Jin, Xiaokang Li, Jiucun Wang
Software Mentions: 1
Published: almost 7 years ago
10.1155/2016/2503267
Bioenergy and Breast Cancer: A Report on Tumor Growth and Metastasis
Cited by: 4
Author(s): Alice Running, Mark C. Greenwood, Laura Hildreth, Jade Schmidt
Software Mentions: 1
Published: almost 9 years ago
10.3390/ijms20040997
Transcriptomic Analysis for Indica and Japonica Rice Varieties under Aluminum Toxicity
Cited by: 10
Author(s): Peng Zhang, Zhuoran Ding, Zhengzheng Zhong, Hanhua Tong
Software Mentions: 1
Published: over 5 years ago
10.1155/2018/3248521
Comparative Proteomic Analysis of Two Differently Extracted Coptis chinensis in the Treatment of Type 2 Diabetic Rats
Cited by: 4
Author(s): Xiang Qiu, Xinyu Wei, Hongwei Guan, Hao Su, Jing Gong, Ke Fang, Xin Zou, Hui Dong, Li Xu, Fanghong Lu
Software Mentions: 1
Published: about 6 years ago
10.1186/1471-2229-11-10
Field transcriptome revealed critical developmental and physiological transitions involved in the expression of growth potential in japonicarice
Cited by: 108
Author(s): Yutaka Satō, Baltazar A. Antonio, Nobukazu Namiki, Ritsuko Motoyama, Kazuhiko Sugimoto, Hinako Takehisa, Hiroshi Minami, Kaori Kamatsuki, Makoto Kusaba, Hirohiko Hirochika, Yoshiaki Nagamura
Software Mentions: 1
Published: almost 14 years ago
10.3390/ijms20071691
Dynamic TMT-Based Quantitative Proteomics Analysis of Critical Initiation Process of Totipotency during Cotton Somatic Embryogenesis Transdifferentiation
Cited by: 12
Author(s): Haixia Guo, Huihui Guo, Li Zhang, Yijie Fan, Yuhang Fan, Zhengmin Tang, Fanchang Zeng
Software Mentions: 1
Published: over 5 years ago
10.1155/2016/2106465
Global Mapping of Traditional Chinese Medicine into Bioactivity Space and Pathways Annotation Improves Mechanistic Understanding and Discovers Relationships between Therapeutic Action (Sub)classes
Cited by: 8
Author(s): Siti Zuraidah Mohamad Zobir, Fazlin Mohd Fauzi, Sonia Liggi, Georgios Drakakis, Xinping Fu, Tai-Ping Fan, Andreas Bender
Software Mentions: 1
Published: almost 9 years ago
10.1186/s13072-016-0053-9
The histone demethylase dKDM5/LID interacts with the SIN3 histone deacetylase complex and shares functional similarities with SIN3
Cited by: 34
Author(s): Ambikai Gajan, Valerie L. Barnes, Mengying Liu, Nirmalya Saha, Lori A. Pile
Software Mentions: 1
Published: almost 9 years ago
10.1080/22221751.2020.1813636
Accurate serology for SARS-CoV-2 and common human coronaviruses using a multiplex approach
Cited by: 44
Author(s): Sophie van Tol, Ramona Mögling, Wentao Li, Gert Jan Godeke, Arno Swart, Barbara J.M. Bergmans, A. H. Brandenburg, Kristin Kremer, Jean Luc Murk, Josine van Beek, Bas Wintermans, Johan Reimerink, Berend Jan Bosch, Chantal Reusken
Software Mentions: 1
Published: almost 5 years ago
10.1002/ece3.2176
A review of extensive variation in the design of pitfall traps and a proposal for a standard pitfall trap design for monitoring ground‐active arthropod biodiversity
Cited by: 100
Author(s): Grant Richard Brown, Iain M. Matthews
Software Mentions: 1
Published: over 8 years ago
10.15252/emmm.201808931
Enriched environment enhances β‐adrenergic signaling to prevent microglia inflammation by amyloid‐β
Cited by: 48
Author(s): Huixin Xu, Molly M Rajsombath, Pia Weikop, Dennis J. Selkoe
Software Mentions: 1
Published: over 6 years ago
10.1186/s12870-015-0414-8
Histone chaperones in Arabidopsis and rice: genome-wide identification, phylogeny, architecture and transcriptional regulation
Cited by: 41
Author(s): Amit Kumar Tripathi, Kundan Singh, Ashwani Pareek, Sneh L. Singla‐Pareek
Software Mentions: 1
Published: almost 10 years ago
10.1128/AAC.01640-17
Discovery of New Inhibitors of Toxoplasma gondii via the Pathogen Box
Cited by: 49
Author(s): Jérémy Spalenka, Sandie Escotte-Binet, Ali Bakiri, Jane Hubert, Jean‐Hugues Renault, Frédéric Velard, Simon Duchateau, Dominique Aubert, A Huguenin, Isabelle Villena
Software Mentions: 1
Published: almost 7 years ago
10.1038/srep10932
Phenotypic diversity within a Pseudomonas aeruginosa population infecting an adult with cystic fibrosis
Cited by: 79
Author(s): Shawn T. Clark, Julio Diaz Caballero, Mary Cheang, Bryan Coburn, Pauline W. Wang, Sylva L. Donaldson, Yu Zhang, Mingyao Liu, Shaf Keshavjee, Yvonne Yau, Valerie Waters, D. Elizabeth Tullis, David S. Guttman, David Hwang
Software Mentions: 1
Published: over 9 years ago
10.1242/dmm.030841
Lipidomic profiling of patient-specific induced pluripotent stem cell-derived hepatocyte-like cells
Cited by: 20
Author(s): Mostafa Kiamehr, Leena E. Viiri, Terhi Vihervaara, Kaisa M. Koistinen, Mika Hilvo, Kim Ekroos, Reijo Käkelä, Katriina Aalto‐Setälä
Software Mentions: 1
Published: almost 8 years ago
10.1128/AAC.00829-17
Identification and Mode of Action of a Plant Natural Product Targeting Human Fungal Pathogens
Cited by: 32
Author(s): Stéphane Dorsaz, Tiia Snäkä, Quentin Favre-Godal, Pierre Marc Xavier Maudens, Nathalie Boulens, Pascal Furrer, Samad Nejad Ebrahimi, Matthias Hamburger, Éric Allémann, Katia Gindro, Emerson Ferreira Queiroz, Howard Riezman, Jean‐Luc Wolfender, Dominique Sanglard
Software Mentions: 1
Published: about 7 years ago
10.1155/2019/5292787
Competitive Endogenous RNA Network Construction and Comparison of Lung Squamous Cell Carcinoma in Smokers and Nonsmokers
Cited by: 10
Author(s): Yan Yao, Tingting Zhang, Ling‐Yu Qi, Ruijuan Liu, Gongxi Liu, Xue Wang, Jie Li, Jia Li, Changgang Sun
Software Mentions: 1
Published: almost 5 years ago
10.1038/srep15930
Chemogenomic profiling of Plasmodium falciparum as a tool to aid antimalarial drug discovery
Cited by: 35
Author(s): Anupam Pradhan, Geoffrey H. Siwo, Naresh Singh, Brian Martens, Bharath Balu, Katrina A. Button-Simons, Aiping Tan, Min Zhang, Kenneth O. Udenze, Rays H. Y. Jiang, Michael T. Ferdig, John Adams, Dennis E. Kyle
Software Mentions: 1
Published: about 9 years ago
10.1007/s00125-021-05491-7
Polygenic risk scores predict diabetes complications and their response to intensive blood pressure and glucose control
Cited by: 18
Author(s): Johanne Tremblay, Mounsif Haloui, Redha Attaoua, Ramzan Tahir, Camil Hishmih, François Harvey, François-Christophe Marois-Blanchet, Carole Long, Paul Simon, Lara Santucci, Candan Hızel, John Chalmers, Michel Marre, Stephen Harrap, Renata Cífková, Alena Krajčoviechová, David R. Matthews, Bryan Williams, Neil Poulter, Sophia Zoungas, Stephen Colagiuri, Giuseppe Mancia, Diederick E. Grobbee, Anthony Rodgers, Liusheng Liu, Mawussé Agbessi, Vanessa Bruat, Marie-Julie Favé, Michelle P Harwood, Philip Awadalla, Mark Woodward, Julie Hussin, Pavel Hamet
Software Mentions: 1
Published: over 3 years ago
10.1016/j.dib.2020.105636
Data on miRNome changes in human cells exposed to nano- or ionic- forms of Cadmium
Cited by: 3
Author(s): Laura Paesano, Marta Marmiroli, Massimiliano G. Bianchi, Jason C. White, Ovidio Bussolati, A. Zappettini, Marco Villani, Nelson Marmiroli
Software Mentions: 1
Published: over 4 years ago
10.3390/ijms20246160
Quantitative Proteomic Analysis Uncovers the Mediation of Endoplasmic Reticulum Stress-Induced Autophagy in DHAV-1-Infected DEF Cells
Cited by: 11
Author(s): Jingjing Lan, Ruihua Zhang, Honglei Yu, Jingyu Wang, Wenxiang Xue, Junhao Chen, Shaoli Lin, Yu Wang, Zhixun Xie, Shijin Jiang
Software Mentions: 1
Published: almost 5 years ago
10.1016/j.dib.2018.11.090
Transcriptomic data for analyzing global gene expression patterns in Methicillin-resistance Staphylococcus aureus in response to spermine and oxacillin stress
Cited by: 2
Author(s): Shrikant Pawar, Xiangyu Yao, Chao Lu
Software Mentions: 1
Published: almost 6 years ago
10.1016/j.dib.2017.06.032
Fatty acid and lipidomic data in normal and tumor colon tissues of rats fed diets with and without fish oil
Cited by: 2
Author(s): Zora Djurić, Muhammad N. Aslam, B Simon, Ananda Sen, Yan Jiang, Jianwei Ren, Rena Chan, Tanu Soni, Thekkelnaycke M. Rajendiran, William L. Smith, Dean E. Brenner
Software Mentions: 1
Published: over 7 years ago
10.1002/acn3.50931
Intrathecal cytokine profile in neuropathy with anti‐neurofascin 155 antibody
Cited by: 11
Author(s): Hidenori Ogata, Zhihui Xu, Ryo Yamasaki, Takayuki Fujii, Akira Machida, Nobutoshi Morimoto, Kenichi Kaida, Teruaki Masuda, Yukio Ando, Motoi Kuwahara, Susumu Kusunoki, Yuri Nakamura, Takuya Matsushita, Noriko Isobe, Jun Ichi Kira
Software Mentions: 1
Published: about 5 years ago
10.1186/s12014-020-09279-6
Effects of cryopreservation and long-term culture on biological characteristics and proteomic profiles of human umbilical cord-derived mesenchymal stem cells
Cited by: 19
Author(s): Xufeng Fu, Bo Xu, Jiang Jiang, Xing Du, Xiaoli Yu, Yaping Yan, Shanshan Li, Briauna Marie Inglis, Huiming Ma, Hongyan Wang, Xiuying Pei, Wei Si
Software Mentions: 1
Published: over 4 years ago
10.1186/s12014-018-9214-0
Differential analysis of quantitative proteome and acetyl-proteome profiling between premenopausal and postmenopausal ovarian tissues
Cited by: 1
Author(s): Jun Yi, Huatianshu Hu, Peipei Shi, Shuangshuang Song, Jing Zhao, Lan Xu, Weining Yang, Bin Li, Zhu Jin, Shien Zou
Software Mentions: 1
Published: about 6 years ago
10.1038/srep21084
Serum microRNA microarray analysis identifies miR-4429 and miR-4689 are potential diagnostic biomarkers for biliary atresia
Cited by: 38
Author(s): Rui Dong, Zhen Shen, Chengchao Zheng, Gong Chen, Shan Zheng
Software Mentions: 1
Published: almost 9 years ago
10.3390/ijms21010278
Changes in Proteome and Protein Phosphorylation Reveal the Protective Roles of Exogenous Nitrogen in Alleviating Cadmium Toxicity in Poplar Plants
Cited by: 29
Author(s): Jin-Liang Huang, Xiaolu Wu, Fengchun Tian, Qi Chen, Pengrui Luo, Fan Zhang, Xueqin Wan, Yu Zhong, Qinglin Liu, Tiantian Lin
Software Mentions: 1
Published: almost 5 years ago
10.1038/srep21618
Correlations of Fecal Metabonomic and Microbiomic Changes Induced by High-fat Diet in the Pre-Obesity State
Cited by: 109
Author(s): Hong Lin, Yanpeng An, Fuhua Hao, Yulan Wang, Huiru Tang
Software Mentions: 1
Published: over 8 years ago
10.1186/s12870-018-1569-x
Genome-wide identification and localization of chalcone synthase family in soybean (Glycine max [L]Merr)
Cited by: 34
Author(s): Arun Kumaran Anguraj Vadivel, Kevin Krysiak, Gang Tian, Sangeeta Dhaubhadel
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12014-021-09314-0
Quantitative proteomics analysis of lysine 2-hydroxyisobutyrylation in IgA nephropathy
Cited by: 5
Author(s): Shaoying Huang, Fengping Zheng, Lin Hua, Xianqing Zhou, Huixuan Xu, Cantong Zhang, Weier Dai, Berthold Hocher, Xinzhou Zhang, Donge Tang, Yong Dai
Software Mentions: 1
Published: almost 4 years ago
10.1111/cei.13403
Expression profiling of single cells and patient cohorts identifies multiple immunosuppressive pathways and an altered NK cell phenotype in glioblastoma
Cited by: 48
Author(s): Helen J. Close, Lucy F. Stead, Jérémie Nsengimana, Katrina A. Reilly, Alastair P. Droop, Heiko Wurdak, Ryan Mathew, Robert Corns, Julia Newton‐Bishop, Alan Melcher, Susan Short, Graham P. Cook, Erica Wilson
Software Mentions: 1
Published: almost 5 years ago
10.1038/srep24967
Model-based genotype-phenotype mapping used to investigate gene signatures of immune sensitivity and resistance in melanoma micrometastasis
Cited by: 17
Author(s): Guido Santos, Светослав Николов, Xin Lai, Martin Eberhardt, Florian S. Dreyer, Sushmita Paul, Gerold Schuler, Julio Vera
Software Mentions: 1
Published: over 8 years ago
10.1186/s13148-018-0541-9
Epigenome-wide DNA methylation regulates cardinal pathological features of psoriasis
Cited by: 66
Author(s): Aditi Chandra, Swapan Senapati, Sudipta Roy, Gobinda Chatterjee, Raghunath Chatterjee
Software Mentions: 1
Published: over 6 years ago
10.3390/cells9020513
Helicobacter Pylori Targets the EPHA2 Receptor Tyrosine Kinase in Gastric Cells Modulating Key Cellular Functions
Cited by: 18
Author(s): Marina Concli Leite, Miguel Sardinha Marques, Joana Melo, M. Pinto, Bruno Cavadas, Miguel Aroso, María Gómez-Lázaro, Raquel Seruca, Céu Figueiredo
Software Mentions: 1
Published: over 4 years ago