cran: gplots | Projects | Ecosyste.ms: Papers

10.1186/gm279

Classification of unknown primary tumors with a data-driven method based on a large microarray reference database
Cited by: 12
Author(s): K. Ojala, Sami Kilpinen, Olli Kallioniemi
Software Mentions: 1
Published: over 15 years ago

10.1093/gbe/evu181

Genomic Organization, Transcriptomic Analysis, and Functional Characterization of Avian α- and β-Keratins in Diverse Feather Forms
Cited by: 57
Author(s): Chen Siang Ng, Ping Wu, Wen‐Lang Fan, Jie Yan, Chih-Kuan Chen, Yu-Ting Lai, Siao-Man Wu, Chi-Tang Mao, Junjie Chen, Mei-Yeh Jade Lu, Meng‐Ru Ho, Randall B. Widelitz, Chih‐Feng Chen, Cheng‐Ming Chuong, Wen-Hsiung Li
Software Mentions: 1
Published: about 12 years ago

10.1186/gb-2012-13-8-r71

A gene expression profile of stem cell pluripotentiality and differentiation is conserved across diverse solid and hematopoietic cancers
Cited by: 67
Author(s): Nathan Palmer, Patrick Raphael Schmid, Bonnie Berger, Isaac S. Kohane
Software Mentions: 1
Published: over 14 years ago

10.1093/gigascience/giy124

Cost-effective assembly of the African wild dog (Lycaon pictus) genome using linked reads
Cited by: 19
Author(s): Ellie E. Armstrong, Ryan W. Taylor, Stefan Prost, Peter Blinston, Esther van der Meer, Hillary Madzikanda, Olivia Mufute, Roseline Mandisodza‐Chikerema, John Stuelpnagel, Claudio Sillero‐Zubiri, Dmitri A. Petrov
Software Mentions: 1
Published: almost 8 years ago

10.1534/genetics.117.203521

Toward Universal Forward Genetics: Using a Draft Genome Sequence of the Nematode Oscheius tipulae To Identify Mutations Affecting Vulva Development
Cited by: 17
Author(s): Fabrice Besnard, Georgios Koutsovoulos, Sana Dieudonné, Mark Blaxter, Marie Anne Félix
Software Mentions: 1
Published: about 9 years ago

10.1186/s12711-016-0184-2

Genetic architecture of fatty acid composition in the longissimus dorsi muscle revealed by genome-wide association studies on diverse pig populations
Cited by: 44
Author(s): Wanchang Zhang, Junjie Zhang, Leilei Cui, Junwu Ma, Congying Chen, Huashui Ai, Xianhua Xie, Li Lin, Shijun Xiao, Lusheng Huang, Jun Ren, Bin Yang
Software Mentions: 1
Published: over 10 years ago

10.1590/1678-4685-GMB-2019-0401

Skin transcriptional profiles in Oophaga poison frogs
Cited by: 1
Author(s): Andrés Posso‐Terranova, José Á. Andrés
Software Mentions: 1
Published: over 6 years ago

10.3390/genes11070813

Sensing, Signaling, and Secretion: A Review and Analysis of Systems for Regulating Host Interaction in Wolbachia
Cited by: 19
Author(s): Amelia R.I. Lindsey
Software Mentions: 1
Published: about 6 years ago

10.3390/genes10060444

Methylome-Wide Association Study in Peripheral White Blood Cells Focusing on Central Obesity and Inflammation
Cited by: 13
Author(s): Ana Arpón, Fermı́n I. Milagro, Omar Ramos-López, María L. Mansego, José Ignacio Riezu-Boj, J. Alfredo Martínéz
Software Mentions: 1
Published: about 7 years ago

10.1155/2013/878956

Characteristics of Clinical Shiga Toxin-ProducingEscherichia coliIsolated from British Columbia
Cited by: 8
Author(s): Kevin Allen, Chad R. Laing, Ana Cancarevic, Yongxiang Zhang, Lili Rosana Mesak, Hai Xu, Ana Paccagnella, Victor P. J. Gannon, Linda Hoang
Software Mentions: 1
Published: over 13 years ago

10.1534/g3.120.401735

Gene Copy Number Variation Does Not Reflect Structure or Environmental Selection in Two Recently Diverged California Populations of Suillus brevipes
Cited by: 1
Author(s): Anna Bazzicalupo, Mallory Thomas, Robert M. Mason, Munro-Ehrlich, Sara Branco
Software Mentions: 1
Published: almost 6 years ago

10.1534/g3.119.400348

Correlating Genotype and Phenotype in the Asexual Yeast Candida orthopsilosis Implicates ZCF29 in Sensitivity to Caffeine
Cited by: 7
Author(s): Kontxi Martinez de San Vicente, Markus S. Schröder, Lisa Lombardi, Elise Iracane, Geraldine Butler
Software Mentions: 1
Published: about 7 years ago

10.1534/g3.115.022137

MicroRNA Maturation and MicroRNA Target Gene Expression Regulation Are Severely Disrupted in Soybeandicer-like1Double Mutants
Cited by: 20
Author(s): Shaun J. Curtin, Jean Michel Michno, Ben Campbell, Javier Gil-Humanes, Sandra M. Mathioni, Reza Hammond, Juan J. Gutiérrez-González, Ryan C. Donohue, Michael B. Kantar, Andrew L. Eamens, Blake C. Meyers, Daniel F. Voytas, Robert M. Stupar
Software Mentions: 1
Published: over 10 years ago

10.3389/fpls.2019.01450

Effects of In Vitro Polyploidization on Agronomic Characteristics and Fruit Carotenoid Content; Implications for Banana Genetic Improvement
Cited by: 8
Author(s): Delphine Amah, Angeline van Biljon, Busie Maziya‐Dixon, Maryke Labuschagne, Rony Swennen
Software Mentions: 1
Published: almost 7 years ago

10.1155/2020/5849323

Proteomic Analysis of Human Esophageal Cancer Using Tandem Mass Tag Quantifications
Cited by: 6
Author(s): Suofeng Sun, Huijuan Zhang, Yu Wang, Jing Gao, Shen Zhou, Yuan Li, Sun‐Young Han, Xiuling Li, Jian Li
Software Mentions: 1
Published: about 6 years ago

10.3389/fpls.2018.00760

Metabolomics of Early Stage Plant Cell–Microbe Interaction Using Stable Isotope Labeling
Cited by: 30
Author(s): Qiuying Pang, Tong Zhang, Yan Wang, Wenwen Kong, Qijie Guan, Xiufeng Yan, Sixue Chen
Software Mentions: 1
Published: over 8 years ago

10.3389/fpls.2019.00509

Pinus Susceptibility to Pitch Canker Triggers Specific Physiological Responses in Symptomatic Plants: An Integrated Approach
Cited by: 16
Author(s): Joana Amaral, Bárbara Correia, Carla António, Ana Margarida Rodrigues, Aurelio Gómez-Cádenas, Luís Valledor, Robert D. Hancock, Artur Alves, Glória Pinto
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2020.01264

Rootstock–Scion Interaction Affects Cadmium Accumulation and Tolerance of Malus
Cited by: 19
Author(s): Jun He, Jiangtao Zhou, Huixue Wan, Xiaolei Zhuang, Huifeng Li, Sijun Qin, Deguo Lyu
Software Mentions: 1
Published: about 6 years ago

10.3389/fpls.2017.01062

The C4 Model Grass Setaria Is a Short Day Plant with Secondary Long Day Genetic Regulation
Cited by: 16
Author(s): Andrew N. Doust, Margarita Mauro-Herrera, John G. Hodge, Jessica Stromski
Software Mentions: 1
Published: about 9 years ago

10.1186/s40249-021-00821-8

Gut microbiota signatures in Schistosoma japonicum infection-induced liver cirrhosis patients: a case–control study
Cited by: 11
Author(s): Qifeng Gui, Huilin Jin, Feng Zhu, Haifeng Lü, Qin Zhang, Jia Xu, Yunmei Yang, Chi Xiao
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2017.00404

Small RNA Sequencing Reveals Differential miRNA Expression in the Early Development of Broccoli (Brassica oleracea var. italica) Pollen
Cited by: 8
Author(s): Hui Li, Yu Wang, Mei Wu, Lihong Li, Chuan Jin, Qingli Zhang, Chengbin Chen, Wenqin Song, Chunguo Wang
Software Mentions: 1
Published: over 9 years ago

10.3390/insects11080543

Functional Variation in Dipteran Gut Bacterial Communities in Relation to Their Diet, Life Cycle Stage and Habitat
Cited by: 12
Author(s): Rebekka Sontowski, Nicole M. van Dam
Software Mentions: 1
Published: about 6 years ago

10.1186/s13293-015-0044-8

Large-scale transcriptome sequencing reveals novel expression patterns for key sex-related genes in a sex-changing fish
Cited by: 74
Author(s): Hui Liu, Melissa S. Lamm, Kim Rutherford, Michael A. Black, John Godwin, Neil J. Gemmell
Software Mentions: 1
Published: almost 11 years ago

10.3389/fpls.2015.00661

RNA-Seq analysis identifies key genes associated with haustorial development in the root hemiparasite Santalum album
Cited by: 38
Author(s): Xinhua Zhang, Oliver Berkowitz, Jaime A. Teixeira da Silva, Muhan Zhang, Guohua Ma, James Whelan, Jun Duan
Software Mentions: 1
Published: about 11 years ago

10.3389/fpls.2017.00946

Genome-Wide Identification of AP2/ERF Transcription Factors in Cauliflower and Expression Profiling of the ERF Family under Salt and Drought Stresses
Cited by: 57
Author(s): Hui Li, Yu Wang, Mei Wu, Lihong Li, Cong Liu, Zhanpin Han, Jiye Yuan, Chengbin Chen, Wenqin Song, Chunguo Wang
Software Mentions: 1
Published: about 9 years ago

10.3389/fpls.2020.563240

Different Age-Induced Changes in Rhizosphere Microbial Composition and Function of Panax ginseng in Transplantation Mode
Cited by: 14
Author(s): Qiuxia Wang, Huifeng Sun, Meijia Li, Chenglu Xu, Yayu Zhang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpls.2021.641678

Specificity and Plasticity of the Functional Ionome of Brassica napus and Triticum aestivum Exposed to Micronutrient or Beneficial Nutrient Deprivation and Predictive Sensitivity of the Ionomic Signatures
Cited by: 9
Author(s): Aurélien D’Oria, Galatéa Courbet, Aurélia Lornac, Sylvain Pluchon, Mustapha Arkoun, Anne Maillard, Philippe Étienne, Sylvain Diquélou, Alain Ourry
Software Mentions: 1
Published: over 5 years ago

10.3389/fphys.2015.00253

Vaginal biogenic amines: biomarkers of bacterial vaginosis or precursors to vaginal dysbiosis?
Cited by: 99
Author(s): Tiffanie M. Nelson, Joanna-Lynn C. Borgogna, Rebecca M. Brotman, Jacques Ravel, Seth T. Walk, Carl J. Yeoman
Software Mentions: 1
Published: almost 11 years ago

10.1172/jci.insight.143379

Brd4 modulates diet-induced obesity via PPARγ-dependent Gdf3 expression in adipose tissue macrophages
Cited by: 10
Author(s): Xiangming Hu, Xingchen Dong, Li Guo, Yanheng Chen, Jinjing Chen, Xian He, Hao Sun, Dong-Hyun Kim, Jongsook Kim Kemper, Linfeng Chen
Software Mentions: 1
Published: over 5 years ago

10.3389/fphys.2021.683651

ETS1, ELK1, and ETV4 Transcription Factors Regulate Angiopoietin-1 Signaling and the Angiogenic Response in Endothelial Cells
Cited by: 5
Author(s): Sharon Harel, Verónica Sánchez, Alaa Moamer, Javier E. Sanchez-Galán, Mohammad N Abid Hussein, Dominique Mayaki, Mathieu Blanchette, Sabah N. A. Hussain
Software Mentions: 1
Published: about 5 years ago

10.1172/jci.insight.150114

Lipin 1 modulates mRNA splicing during fasting adaptation in liver
Cited by: 4
Author(s): Huan Wang, Tracey W. Chan, Ajay A. Vashisht, Brian G. Drew, Anna C. Calkin, Thurl E. Harris, James A. Wohlschlegel, Xinshu Xiao, Karen Reue
Software Mentions: 1
Published: almost 5 years ago

10.3389/fphys.2021.690185

Comparative Genomics Provide Insights Into Function and Evolution of Odorant Binding Proteins in Cydia pomonella
Cited by: 3
Author(s): Cong Huang, Xue Zhang, Dalin He, Qiang Wu, Rui Tang, Longsheng Xing, Wan‐Xue Liu, Wenkai Wang, Bo Liu, Yu X, Yang Ni, Fanghao Wan, Wanqiang Qian
Software Mentions: 1
Published: about 5 years ago

10.1186/s12967-015-0605-y

Altered microRNAs expression profiling in cumulus cells from patients with polycystic ovary syndrome
Cited by: 48
Author(s): Suying Liu, Xuan Zhang, Changgen Shi, Jimin Lin, Guowu Chen, Bin Wu, Ligang Wu, Huijuan Shi, Yuan Yao, Weijin Zhou, Zilong Sun, Xi Dong, Jian Wang
Software Mentions: 1
Published: about 11 years ago

10.1074/jbc.M114.562389

The Nuclear Localization of γ-Tubulin Is Regulated by SadB-mediated Phosphorylation
Cited by: 23
Author(s): Greta Eklund, Stefan Lang, Johan Glindre, Åsa Ehlén, María Alvarado-Kristensson
Software Mentions: 1
Published: about 12 years ago

10.3389/fphys.2018.01399

Proteomic Responses Under Cold Stress Reveal Unique Cold Tolerance Mechanisms in the Pacific White Shrimp (Litopenaeus vannamei)
Cited by: 15
Author(s): J. Peng, Pingping He, Pinyuan Wei, Bin Zhang, Yang Zhao, Qiangyong Li, Xiuli Chen, Min Peng, Dingyuan Zeng, Chunling Yang
Software Mentions: 1
Published: almost 8 years ago

10.3389/fonc.2019.00930

Phospho-Protein Arrays as Effective Tools for Screening Possible Targets for Kinase Inhibitors and Their Use in Precision Pediatric Oncology
Cited by: 7
Author(s): Jakub Neradil, Michal Kýr, Kristýna Polášková, Leoš Křen, Petra Macigova, J. Škoda, Jaroslav Štěrba, Renata Veselská
Software Mentions: 1
Published: almost 7 years ago

10.3389/fonc.2020.562253

Long Noncoding RNA LOC400043 (LINC02381) Inhibits Gastric Cancer Progression Through Regulating Wnt Signaling Pathway
Cited by: 28
Author(s): Meisam Jafarzadeh, Bahram Mohammad Soltani
Software Mentions: 1
Published: almost 6 years ago

10.3389/fonc.2021.691500

A Newly Identified lncBCAS1-4_1 Associated With Vitamin D Signaling and EMT in Ovarian Cancer Cells
Cited by: 3
Author(s): Yi Xue, Ping Wang, Fei Jiang, Jie Yu, Hongmei Ding, Zengli Zhang, Hailong Pei, Bingyan Li
Software Mentions: 1
Published: about 5 years ago

10.3389/fonc.2019.01054

Identification of Candidate Biomarkers and Analysis of Prognostic Values in Oral Squamous Cell Carcinoma
Cited by: 48
Author(s): Guangzhao Huang, Qimeng Wu, Zenan Zheng, Ting-ru Shao, Xiaoyang Lv
Software Mentions: 1
Published: almost 7 years ago

10.3389/fnins.2019.01365

Tryptophan Metabolism by Gut Microbiome and Gut-Brain-Axis: An in silico Analysis
Cited by: 164
Author(s): Harrisham Kaur, Chandrani Bose, Sharmila S. Mande
Software Mentions: 1
Published: over 6 years ago

10.3389/fnins.2018.00220

Transcriptional Profiling of Ligand Expression in Cell Specific Populations of the Adult Mouse Forebrain That Regulates Neurogenesis
Cited by: 11
Author(s): Kasum Azim, Rainer Akkermann, Martina Cantone, Julio Vera, Janusz Jadasz, Patrick Küry
Software Mentions: 1
Published: over 8 years ago

10.3389/fnmol.2021.665931

Transcriptome Analysis Reveals the Role of Cellular Calcium Disorder in Varicella Zoster Virus-Induced Post-Herpetic Neuralgia
Cited by: 13
Author(s): Songbin Wu, Shaomin Yang, Mingxi Ou, Jiamin Chen, Jinbo Huang, Dehua Xiong, Wuping Sun, Lizu Xiao
Software Mentions: 1
Published: over 5 years ago

10.1242/bio.20148193

Autocrine Activation of the Wnt/β-Catenin Pathway by CUX1 and GLIS1 in Breast Cancers
Cited by: 34
Author(s): Charles Vadnais, Peiman Shooshtarizadeh, Charles V. Rajadurai, Robert Lesurf, Laura Hulea, Sayeh Davoudi, C. Linn Cadieux, Michael Hallett, Morag Park, Alain Nepveu
Software Mentions: 1
Published: almost 12 years ago

10.1111/jcmm.12819

Micro <scp>RNA</scp> expression profile of human periodontal ligament cells under the influence of Porphyromonas gingivalis <scp>LPS</scp>
Cited by: 37
Author(s): Anqing Du, Sen Zhao, Lingyun Wan, TianTao Liu, Zaoxia Peng, Ziyu Zhou, Zhengyu Liao, Huan Fang
Software Mentions: 1
Published: over 10 years ago

10.3389/fnmol.2013.00049

Genome-wide assessment of post-transcriptional control in the fly brain
Cited by: 8
Author(s): Shaul Mezan, Reut Ashwal-Fluss, Rom Shenhav, Manuel Garber, Sebastián Kadener
Software Mentions: 1
Published: over 13 years ago

10.3389/fmicb.2021.619711

Soil Disturbance Affects Plant Productivity via Soil Microbial Community Shifts
Cited by: 7
Author(s): Taylor J. Seitz, Ursel M. E. Schütte, Devin M. Drown
Software Mentions: 1
Published: over 5 years ago

10.3897/BDJ.9.e60980

Patterns of richness, diversity and abundance of an odonate assemblage from a tropical dry forest in the Santiago Dominguillo Region, Oaxaca, México (Insecta: Odonata)
Cited by: 0
Author(s): Enrique González-Soriano, Felipe A. Noguera, Cisteil X. Pérez-Hernández, Santiago Zaragoza‐Caballero, Leonardo González-Valencia
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2017.01459

Comparative Sequence Analysis of Multidrug-Resistant IncA/C Plasmids from Salmonella enterica
Cited by: 27
Author(s): Maria Hoffmann, James B. Pettengill, Narjol González-Escalona, John N. Miller, Sherry Ayers, Shaohua Zhao, Marc W. Allard, Patrick F. McDermott, Eric W. Brown, Steven R. Monday
Software Mentions: 1
Published: about 9 years ago

10.3389/fimmu.2019.02633

Constitutive Activation of Natural Killer Cells in Primary Biliary Cholangitis
Cited by: 12
Author(s): Theresa Hydes, Matthew D. Blunt, Jennifer Naftel, Andrés F. Vallejo, Grégory Seumois, Alice Wang, Pandurangan Vijayanand, Marta E. Polak, Salim I. Khakoo
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12917-017-1157-6

OmpA protein sequence-based typing and virulence-associated gene profiles of Pasteurella multocida isolates associated with bovine haemorrhagic septicaemia and porcine pneumonic pasteurellosis in Thailand
Cited by: 5
Author(s): Teerasak E-kobon, Ratiporn Leeanan, Saengtian Pannoi, Pornchai Anuntasomboon, Pacharee Thongkamkoon, Arinthip Thamchaipenet
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms18040751

Exploring the Genetic Resistance to Gastrointestinal Nematodes Infection in Goat Using RNA-Sequencing
Cited by: 20
Author(s): Ali Akbar Bhuiyan, Jingjin Li, Zhenyang Wu, Peihong Ni, Adeyinka Abiola Adetula, Haiyan Wang, Cheng Zhang, Xiaohui Tang, Anjuman Ara Bhuyan, Zhao Song, Xiaoyong Du
Software Mentions: 1
Published: over 9 years ago

10.1128/JCM.00881-16

Resolution of a Protracted Serogroup B Meningococcal Outbreak with Whole-Genome Sequencing Shows Interspecies Genetic Transfer
Cited by: 11
Author(s): Robert M. Mulhall, Carina Brehony, Lois O’Connor, Kenneth Meyler, Keith A. Jolley, James E. Bray, Désirée E. Bennett, Martin Maiden, Robert Cunney
Software Mentions: 1
Published: almost 10 years ago

10.3389/fimmu.2018.02545

Identification of CVID Patients With Defects in Immune Repertoire Formation or Specification
Cited by: 22
Author(s): Pauline A. van Schouwenburg, Hanna IJspeert, Ingrid Pico-Knijnenburg, Virgil A. S. H. Dalm, P. Martin van Hagen, David van Zessen, Andrew Stubbs, Smita Y. Patel, Mirjam van der Burg
Software Mentions: 1
Published: almost 8 years ago

10.3389/fimmu.2018.00704

One-Year Follow-Up of Natural Killer Cell Activity in Multiple Myeloma Patients Treated With Adjuvant Lenalidomide Therapy
Cited by: 14
Author(s): Laurie Besson, Emily Charrier, Lionel Karlin, Omran Allatif, Antoine Marçais, Paul Rouzaire, Lucie Belmont, Michel Attal, Christine Lombard, Gilles Salles, Thierry Walzer, Sébastien Viel
Software Mentions: 1
Published: over 8 years ago

10.3389/fimmu.2021.638020

The First Contact of Human Dendritic Cells With Trypanosoma cruzi Reveals Response to Virus as an Unexplored Central Pathway
Cited by: 2
Author(s): Natalia Gil-Jaramillo, Amanda Pereira Rocha, Tainá Raiol, Flávia Nader Motta, Cecília Favali, Marcelo M. Brígido, Izabela Marques Dourado Bastos, Jaime M. Santana
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2018.00744

CLEC10A Is a Specific Marker for Human CD1c+ Dendritic Cells and Enhances Their Toll-Like Receptor 7/8-Induced Cytokine Secretion
Cited by: 86
Author(s): Lukas Heger, Silke Balk, Jennifer J. Lühr, Gordon F. Heidkamp, Christian Lehmann, Lukas Hatscher, Ariawan Purbojo, Arndt Hartmann, Fayna García-Martín, Shin‐Ichiro Nishimura, Robert Cesnjevar, Falk Nimmerjahn, Diana Dudziak
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.23406

Menopause and adipose tissue: miR-19a-3p is sensitive to hormonal replacement
Cited by: 22
Author(s): Reeta Kangas, Cristina Morsiani, G Pizza, Catia Lanzarini, Pauliina Aukee, Jaakko Kaprio, Sarianna Sipilä, Claudio Franceschi, Vuokko Kovanen, Eija K. Laakkonen, Miriam Capri
Software Mentions: 1
Published: over 8 years ago

10.3389/fimmu.2017.02004

Monocytes Differentiate to Immune Suppressive Precursors of Metastasis-Associated Macrophages in Mouse Models of Metastatic Breast Cancer
Cited by: 113
Author(s): Takanori Kitamura, Dahlia Doughty-Shenton, Luca Cassetta, Stamatina Fragkogianni, Demi Brownlie, Yu Kato, Neil O. Carragher, Jeffrey W. Pollard
Software Mentions: 1
Published: over 8 years ago

10.1128/AEM.01993-19

Comparative Genomics of Rumen Butyrivibrio spp. Uncovers a Continuum of Polysaccharide-Degrading Capabilities
Cited by: 54
Author(s): Nikola Palevich, William J. Kelly, Sinead C. Leahy, Stuart E. Denman, Eric Altermann, Jasna Rakonjac, Graeme T. Attwood
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2021.633756

EZH2-Mediated microRNA-375 Upregulation Promotes Progression of Breast Cancer via the Inhibition of FOXO1 and the p53 Signaling Pathway
Cited by: 19
Author(s): Xin Guan, Aiping Shi, Yabin Zou, Meiyang Sun, Yue Zhan, Yi Dong, Zhimin Fan
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.00873

Dissecting the Molecular Function of Triticum aestivum STI Family Members Under Heat Stress
Cited by: 10
Author(s): Shaloo Meena, Sohini Deb, Harsha Samtani, Paramjit Khurana
Software Mentions: 1
Published: about 6 years ago

10.1093/aobpla/plw051

Reproductive traits affect the rescue of valuable and endangered multipurpose tropical trees
Cited by: 4
Author(s): Viviane C.O. Sinébou, Muriel Quinet, B. C. Ahohuendo, Anne‐Laure Jacquemart
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.ppat.1000767

Universal Features of Post-Transcriptional Gene Regulation Are Critical for Plasmodium Zygote Development
Cited by: 236
Author(s): Gunnar R. Mair, Edwin Lasonder, Lindsey S. Garver, Blandine Franke-Fayard, Céline Carret, J. Wiegant, Roeland W. Dirks, George Dimopoulos, Chris J. Janse, Andrew P. Waters
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.ppat.1001097

The Microbiota Mediates Pathogen Clearance from the Gut Lumen after Non-Typhoidal Salmonella Diarrhea
Cited by: 294
Author(s): Kathrin Endt, Baerbel Stecher, Samuel Chaffron, Emma Slack, Nicolas Tchitchek, Arndt Benecke, Laurye Van Maele, Jean‐Claude Sirard, A. Mueller, Mathias Heikenwälder, Andrew J. Macpherson, Richard A. Strugnell, Christian von Mering, Wolf‐Dietrich Hardt
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.ppat.1002584

Dengue Virus Infection Perturbs Lipid Homeostasis in Infected Mosquito Cells
Cited by: 264
Author(s): Rushika Perera, Catherine P. Riley, Giorgis Isaac, Amber S. Hopf-Jannasch, Ronald J. Moore, Karl Weitz, Ljiljana Paša‐Tolić, Thomas O. Metz, Jiřı́ Adamec, Richard Kühn
Software Mentions: 1
Published: over 14 years ago

10.3389/fendo.2021.598656

Seven Novel Genes Related to Cell Proliferation and Migration of VHL-Mutated Pheochromocytoma
Cited by: 6
Author(s): Shuai Gao, Longfei Liu, Zhuolin Li, Yingxian Pang, Jiaqi Shi, Fenlu Zhu
Software Mentions: 1
Published: over 5 years ago

10.3390/antiox8050120

Cell-Type Specific Analysis of Selenium-Related Genes in Brain
Cited by: 14
Author(s): Alexandru R. Sasuclark, Vedbar S. Khadka, Michael R. Pitts
Software Mentions: 1
Published: over 7 years ago

10.3389/fchem.2021.659583

The Impact of Nutritional Supplementation on Sweat Metabolomic Content: A Proof-of-Concept Study
Cited by: 3
Author(s): Sean W. Harshman, Andrew B. Browder, Christina N. Davidson, Rhonda L. Pitsch, Kraig E. Strayer, Nicole M. Schaeublin, Mandy S. Phelps, Maegan L. O’Connor, Nicholas S. Mackowski, Kristyn N. Barrett, Jason J. Eckerle, Adam J. Strang, Jennifer A. Martin
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1005133

Mitochondrial Activity and Cyr1 Are Key Regulators of Ras1 Activation of C. albicans Virulence Pathways
Cited by: 88
Author(s): Nora Grahl, Elora G. Demers, Allia K. Lindsay, Colleen E. Harty, Sven D. Willger, Amy E. Piispanen, Deborah A. Hogan
Software Mentions: 1
Published: about 11 years ago

10.3389/fncel.2015.00079

Identification and characterization of mouse otic sensory lineage genes
Cited by: 37
Author(s): Byron H. Hartman, Robert Durruthy-Durruthy, Roman D. Laske, Steven Losorelli, Stefan Heller
Software Mentions: 1
Published: over 11 years ago

10.3389/fncel.2019.00181

Phagocytosis of Apoptotic Cells Is Specifically Upregulated in ApoE4 Expressing Microglia in vitro
Cited by: 22
Author(s): Christiane Muth, A. Hartmann, Diego Sepúlveda-Falla, Markus Glatzel, Susanne Krasemann
Software Mentions: 1
Published: over 7 years ago

10.3389/fcimb.2020.525335

Integrative and Conjugative Elements of Helicobacter pylori Are Hypothetical Virulence Factors Associated With Gastric Cancer
Cited by: 6
Author(s): Eduardo Mucito-Varela, Gonzalo Castillo-Rojas, Juan J. Calva, Yolanda López‐Vidal
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13104-021-05746-x

Distinctive prokaryotic microbiomes in sympatric plant roots from a Yucatan cenote
Cited by: 0
Author(s): Alejandra Escobar‐Zepeda, Patricia Rosas-Escobar, Laura Márquez-Valdelamar, Patricia De La Torre, Laila P. Partida‐Martínez, Ruben Remegaldo, Alejandro Sánchez-Flores, Fredd Vergara
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1006718

Tissue-specific transcriptome analyses provide new insights into GPCR signalling in adult Schistosoma mansoni
Cited by: 25
Author(s): Steffen Hahnel, Nic Wheeler, Zhigang Lu, Arporn Wangwiwatsin, Paul McVeigh, Aaron G. Maule, Matthew Berriman, Timothy A. Day, Paula Ribeiro, Christoph G. Grevelding
Software Mentions: 1
Published: over 8 years ago

10.1186/s12890-020-01232-5

Combined signaling of NF-kappaB and IL-17 contributes to Mesenchymal stem cells-mediated protection for Paraquat-induced acute lung injury
Cited by: 8
Author(s): Lichun Zhang, Yu Wang, Haitao Shen, Min Zhao
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms19113438

Identification of Soybean Genes Whose Expression is Affected by the Ensifer fredii HH103 Effector Protein NopP
Cited by: 15
Author(s): Jinhui Wang, Jieqi Wang, Chunyan Liu, Chao Ma, Changyu Li, Yongqian Zhang, Zhaoming Qi, Rong Zhu, Yan Shi, Jianan Zou, Qingying Li, Junjie Zhu, Yan Wen, Zhijun Sun, Hanxi Liu, Hongwei Jiang, Zhan Yin, Zhenbang Hu, Qingshan Chen, Xiaoxia Wu, Dawei Xin
Software Mentions: 1
Published: almost 8 years ago

10.3389/fcimb.2016.00111

Recombination Is a Major Driving Force of Genetic Diversity in the Anaplasmataceae Ehrlichia ruminantium
Cited by: 15
Author(s): Nídia Cangi, Jonathan Gordon, Laure Bournez, Valérie Pinarello, Rosalie Aprelon, Karine Huber, Thierry Lefrançois, Luís Neves, Damien Meyer, Nathalie Vachiéry
Software Mentions: 1
Published: almost 10 years ago

10.3389/fcimb.2017.00517

Tick-Host Range Adaptation: Changes in Protein Profiles in Unfed Adult Ixodes scapularis and Amblyomma americanum Saliva Stimulated to Feed on Different Hosts
Cited by: 54
Author(s): Lucas Tirloni, Tae Kyoung Kim, Antônio Frederico Michel Pinto, John R. Yates, Itabajara da Silva Vaz, Albert Mulenga
Software Mentions: 1
Published: over 8 years ago

10.3389/fcimb.2016.00177

ExsE Is a Negative Regulator for T3SS Gene Expression in Vibrio alginolyticus
Cited by: 14
Author(s): Jinxin Liu, Shao-Yeh Lu, Lisa H. Orfe, Chen Ren, Chaoqun Hu, Douglas R. Call, Johannetsy J. Avillan, Zhe Zhao
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12870-021-03019-0

Comparative transcriptome analysis reveals distinct gene expression profiles in Brachypodium distachyon infected by two fungal pathogens
Cited by: 4
Author(s): Guijie Zhu, Chengyu Gao, Chenyu Wu, Mu Li, Jin‐Rong Xu, Huiquan Liu, Qinhu Wang
Software Mentions: 1
Published: about 5 years ago

10.3389/fcell.2020.567028

Protein Lysine Acetylation in Ovarian Granulosa Cells Affects Metabolic Homeostasis and Clinical Presentations of Women With Polycystic Ovary Syndrome
Cited by: 21
Author(s): Zheying Min, Xiaoyü Li, Haiquan Zhao, Xiumei Zhang, Rong Li, Mo Li, Yong Fan, Yang Yu, Yue Zhao, Jie Qiao
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms20040997

Transcriptomic Analysis for Indica and Japonica Rice Varieties under Aluminum Toxicity
Cited by: 10
Author(s): Peng Zhang, Zhuoran Ding, Zhengzheng Zhong, Hanhua Tong
Software Mentions: 1
Published: over 7 years ago

10.3389/fcell.2020.571948

The Adipose Microenvironment Dysregulates the Mammary Myoepithelial Cells and Could Participate to the Progression of Breast Cancer
Cited by: 10
Author(s): Laëtitia Delort, Juliette Cholet, Caroline Decombat, Marion Vermerie, Charles Dumontet, Florence Castelli, François Fenaille, Céline Auxenfans, Adrien Rossary, Florence Caldefie-Chézet
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2229-11-10

Field transcriptome revealed critical developmental and physiological transitions involved in the expression of growth potential in japonicarice
Cited by: 108
Author(s): Yutaka Satō, Baltazar A. Antonio, Nobukazu Namiki, Ritsuko Motoyama, Kazuhiko Sugimoto, Hinako Takehisa, Hiroshi Minami, Kaori Kamatsuki, Makoto Kusaba, Hirohiko Hirochika, Yoshiaki Nagamura
Software Mentions: 1
Published: over 15 years ago

10.3390/ijms20071691

Dynamic TMT-Based Quantitative Proteomics Analysis of Critical Initiation Process of Totipotency during Cotton Somatic Embryogenesis Transdifferentiation
Cited by: 12
Author(s): Haixia Guo, Huihui Guo, Li Zhang, Yijie Fan, Yuhang Fan, Zhengmin Tang, Fanchang Zeng
Software Mentions: 1
Published: over 7 years ago

10.3389/fcell.2015.00015

Epigenetic reprogramming and re-differentiation of a Ewing sarcoma cell line
Cited by: 21
Author(s): Joseph B. Moore, David M. Loeb, Kyung U. Hong, Poul H. Sorensen, Timothy J. Triche, David W. Lee, Michael I. Barbato, Robert J. Arceci
Software Mentions: 1
Published: over 11 years ago

10.3390/foods9030349

Sensory Improvement of a Pea Protein-Based Product Using Microbial Co-Cultures of Lactic Acid Bacteria and Yeasts
Cited by: 60
Author(s): Cynthia El Youssef, Pascal Bonnarme, Sébastien Fraud, Anne-Claire Péron, Sandra Hélinck, Sophie Landaud
Software Mentions: 1
Published: over 6 years ago

10.3390/foods9010017

Benefits of the Use of Lactic Acid Bacteria Starter in Green Cracked Cypriot Table Olives Fermentation
Cited by: 12
Author(s): Dimitrios A. Anagnostopoulos, Vlasios Goulas, Eleni Xenofontos, Christos Vouras, Nikolaos Nikoloudakis, Dimitrios Tsaltas
Software Mentions: 1
Published: over 6 years ago

10.1002/2211-5463.12343

A standardized fold change method for microarray differential expression analysis used to reveal genes involved in acute rejection in murine allograft models
Cited by: 1
Author(s): Weichen Zhou, Yi Wang, Masayuki Fujino, Leming Shi, Li Jin, Xiaokang Li, Jiucun Wang
Software Mentions: 1
Published: over 8 years ago

10.1136/rmdopen-2020-001175

Achieving sustained minimal disease activity with methotrexate in early interleukin 23-driven early psoriatic arthritis
Cited by: 4
Author(s): Hannah den Braanker, Kim Wervers, Anne‐Marie Mus, Priyanka S Bangoer, Nadine Davelaar, Jolanda J. Luime, I. Tchetverikov, Johanna M. W. Hazes, Marijn Vis, Erik Lubberts, Marc R. Kok
Software Mentions: 1
Published: about 6 years ago

10.1080/15476286.2019.1646079

Targeted sequencing reveals expanded genetic diversity of human transfer RNAs
Cited by: 18
Author(s): Matthew D. Berg, Daniel J. Giguere, Jacqueline S. Dron, Jeremy T. Lant, Julie Genereaux, Calwing Liao, Jian Wang, John F. Robinson, Gregory B. Gloor, Robert A. Hegele, Patrick O’Donoghue, Christopher J. Brandl
Software Mentions: 1
Published: about 7 years ago

10.1155/2016/2503267

Bioenergy and Breast Cancer: A Report on Tumor Growth and Metastasis
Cited by: 4
Author(s): Alice Running, Mark C. Greenwood, Laura Hildreth, Jade Schmidt
Software Mentions: 1
Published: over 10 years ago

10.1186/s12870-015-0414-8

Histone chaperones in Arabidopsis and rice: genome-wide identification, phylogeny, architecture and transcriptional regulation
Cited by: 41
Author(s): Amit Kumar Tripathi, Kundan Singh, Ashwani Pareek, Sneh L. Singla‐Pareek
Software Mentions: 1
Published: over 11 years ago

10.1155/2018/3248521

Comparative Proteomic Analysis of Two Differently Extracted Coptis chinensis in the Treatment of Type 2 Diabetic Rats
Cited by: 4
Author(s): Xiang Qiu, Xinyu Wei, Hongwei Guan, Hao Su, Jing Gong, Ke Fang, Xin Zou, Hui Dong, Li Xu, Fanghong Lu
Software Mentions: 1
Published: almost 8 years ago

10.1155/2016/2106465

Global Mapping of Traditional Chinese Medicine into Bioactivity Space and Pathways Annotation Improves Mechanistic Understanding and Discovers Relationships between Therapeutic Action (Sub)classes
Cited by: 8
Author(s): Siti Zuraidah Mohamad Zobir, Fazlin Mohd Fauzi, Sonia Liggi, Georgios Drakakis, Xinping Fu, Tai-Ping Fan, Andreas Bender
Software Mentions: 1
Published: over 10 years ago

10.1186/s13072-016-0053-9

The histone demethylase dKDM5/LID interacts with the SIN3 histone deacetylase complex and shares functional similarities with SIN3
Cited by: 34
Author(s): Ambikai Gajan, Valerie L. Barnes, Mengying Liu, Nirmalya Saha, Lori A. Pile
Software Mentions: 1
Published: over 10 years ago

10.1128/AAC.01640-17

Discovery of New Inhibitors of Toxoplasma gondii via the Pathogen Box
Cited by: 49
Author(s): Jérémy Spalenka, Sandie Escotte-Binet, Ali Bakiri, Jane Hubert, Jean‐Hugues Renault, Frédéric Velard, Simon Duchateau, Dominique Aubert, A Huguenin, Isabelle Villena
Software Mentions: 1
Published: over 8 years ago

10.1128/AAC.00829-17

Identification and Mode of Action of a Plant Natural Product Targeting Human Fungal Pathogens
Cited by: 32
Author(s): Stéphane Dorsaz, Tiia Snäkä, Quentin Favre-Godal, Pierre Marc Xavier Maudens, Nathalie Boulens, Pascal Furrer, Samad Nejad Ebrahimi, Matthias Hamburger, Éric Allémann, Katia Gindro, Emerson Ferreira Queiroz, Howard Riezman, Jean‐Luc Wolfender, Dominique Sanglard
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms20246160

Quantitative Proteomic Analysis Uncovers the Mediation of Endoplasmic Reticulum Stress-Induced Autophagy in DHAV-1-Infected DEF Cells
Cited by: 11
Author(s): Jingjing Lan, Ruihua Zhang, Honglei Yu, Jingyu Wang, Wenxiang Xue, Junhao Chen, Shaoli Lin, Yu Wang, Zhixun Xie, Shijin Jiang
Software Mentions: 1
Published: almost 7 years ago

10.1080/22221751.2020.1813636

Accurate serology for SARS-CoV-2 and common human coronaviruses using a multiplex approach
Cited by: 44
Author(s): Sophie van Tol, Ramona Mögling, Wentao Li, Gert Jan Godeke, Arno Swart, Barbara J.M. Bergmans, A. H. Brandenburg, Kristin Kremer, Jean Luc Murk, Josine van Beek, Bas Wintermans, Johan Reimerink, Berend Jan Bosch, Chantal Reusken
Software Mentions: 1
Published: over 6 years ago

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