cran: gplots | Projects | Ecosyste.ms: Papers

10.3390/ijms21062131

Influence of Salt Stress on Growth of Spermosphere Bacterial Communities in Different Peanut (Arachis hypogaea L.) Cultivars
Cited by: 9
Author(s): Yang Xu, Dai Zhang, Lei Dai, Hong Ding, Dunwei Ci, Feifei Qin, Guanchu Zhang, Zhimeng Zhang
Software Mentions: 1
Published: over 6 years ago

10.3892/mmr.2015.3773

Identification of key transcription factors in caerulein-induced pancreatitis through expression profiling data
Cited by: 4
Author(s): Dachuan Qi, Bo Wu, Danian Tong, Ye Pan, Wei Chen
Software Mentions: 1
Published: over 11 years ago

10.3390/molecules26041128

A Significant Change in Free Amino Acids of Soybean (Glycine max L. Merr) through Ethylene Application
Cited by: 5
Author(s): Yeong Jun Ban, Yeong Hun Song, Jeong‐Yoon Kim, Joon Yung, Imdad Ali, Aizhamal Baiseitova, Abdul Bari Shah, Woe‐Yeon Kim, Ki Hun Park
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0218630

Differential immune gene response in gills, skin, and spleen of rainbow trout Oncorhynchus mykiss infected by Ichthyophthirius multifiliis
Cited by: 23
Author(s): Khairul Syahputra, Per W. Kania, Azmi Al‐Jubury, Huria Marnis, Agung Cahyo Setyawan, Kurt Buchmann
Software Mentions: 1
Published: about 7 years ago

10.3389/fchem.2021.659583

The Impact of Nutritional Supplementation on Sweat Metabolomic Content: A Proof-of-Concept Study
Cited by: 3
Author(s): Sean W. Harshman, Andrew B. Browder, Christina N. Davidson, Rhonda L. Pitsch, Kraig E. Strayer, Nicole M. Schaeublin, Mandy S. Phelps, Maegan L. O’Connor, Nicholas S. Mackowski, Kristyn N. Barrett, Jason J. Eckerle, Adam J. Strang, Jennifer A. Martin
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.23406

Menopause and adipose tissue: miR-19a-3p is sensitive to hormonal replacement
Cited by: 22
Author(s): Reeta Kangas, Cristina Morsiani, G Pizza, Catia Lanzarini, Pauliina Aukee, Jaakko Kaprio, Sarianna Sipilä, Claudio Franceschi, Vuokko Kovanen, Eija K. Laakkonen, Miriam Capri
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0062483

ARID1A Alterations Are Associated with FGFR3-Wild Type, Poor-Prognosis, Urothelial Bladder Tumors
Cited by: 53
Author(s): Cristina Balbás-Martínez, María Rodríguez-Pinilla, Ariel Casanova, Orlando Domı́nguez, David G. Pisano, Gonzalo Vázquez Gómez, Josep Lloreta, José A. Lorente, Núria Malats, Francisco X. Real
Software Mentions: 1
Published: over 13 years ago

10.3390/molecules25174001

Anti-Obesity and Gut Microbiota Modulation Effect of Secoiridoid-Enriched Extract from Fraxinus mandshurica Seeds on High-Fat Diet-Fed Mice
Cited by: 15
Author(s): Sheng Guo, Haoan Zhao, Zhengliang Ma, Shanshan Zhang, Mingrou Li, Zhou Zheng, Xiaolin Ren, Chi Tang Ho, Naisheng Bai
Software Mentions: 1
Published: about 6 years ago

10.1186/1755-8166-7-8

Differences and homologies of chromosomal alterations within and between breast cancer cell lines: a clustering analysis
Cited by: 36
Author(s): Milena Rondón-Lagos, Ludovica Verdun di Cantogno, Caterina Marchiò, Nelson Rangel, César Payán‐Gómez, Patrizia Gugliotta, C. Botta, Gianni Bussolati, Sandra Ramírez-Clavijo, Barbara Pasini, Anna Sapino
Software Mentions: 1
Published: over 12 years ago

10.1186/1476-4598-9-303

Investigation of DNA damage response and apoptotic gene methylation pattern in sporadic breast tumors using high throughput quantitative DNA methylation analysis technology
Cited by: 33
Author(s): Ranjana Pal, Niraj Kumar Srivastava, Rupali Chopra, Sailesh Gochhait, Pawan Gupta, Neeraj Prakash, Gaurav Agarwal, R. Bamezai
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0190897

The endocannabinoid gene faah2a modulates stress-associated behavior in zebrafish
Cited by: 16
Author(s): Randall G. Krug, Han B. Lee, Louis El Khoury, Ashley N. Sigafoos, Morgan O. Petersen, Karl J. Clark
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-021-85356-6

Wnt5A modulates integrin expression in a receptor-dependent manner in ovarian cancer cells
Cited by: 6
Author(s): Vajihe Azimian-Zavareh, Zeinab Dehghani-Ghobadi, Marzieh Ebrahimi, Kian Mirzazadeh, Irina Nazarenko, Ghamartaj Hossein
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0159030

Functional Comparison of Bacteria from the Human Gut and Closely Related Non-Gut Bacteria Reveals the Importance of Conjugation and a Paucity of Motility and Chemotaxis Functions in the Gut Environment
Cited by: 8
Author(s): Dragana Dobrijevic, Anne-Laure Abraham, Alexandre Jamet, Emmanuelle Maguin, Maarten van de Guchte
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0054644

A Novel Proteomics-Based Clinical Diagnostics Technology Identifies Heterogeneity in Activated Signaling Pathways in Gastric Cancers
Cited by: 35
Author(s): Jeeyun Lee, Sung Hoon Kim, Philip Kim, Xinjun Liu, Tani Lee, Kyoung‐Mee Kim, In‐Gu Do, Joon Oh Park, Se Hoon Park, Jiryeon Jang, Nicholas Hoe, Gulia Harvie, Anne Kuller, Anjali Jain, Gary Meyer, Glen Leesman, Young Suk Park, Min Gew Choi, Tae Sung Sohn, Jae Moon Bae, Ho Yeong Lim, Sharat Singh, Won Ki Kang
Software Mentions: 1
Published: over 13 years ago

10.1038/s41598-021-86593-5

Exercise rapidly alters proteomes in mice following spinal cord demyelination
Cited by: 14
Author(s): Brian Lozinski, Luiz G. N. de Almeida, Claudia Silva, Yifei Dong, Dennis Brown, Sameeksha Chopra, V. Wee Yong, Antoine Dufour
Software Mentions: 1
Published: over 5 years ago

10.1093/gbe/evu181

Genomic Organization, Transcriptomic Analysis, and Functional Characterization of Avian α- and β-Keratins in Diverse Feather Forms
Cited by: 57
Author(s): Chen Siang Ng, Ping Wu, Wen‐Lang Fan, Jie Yan, Chih-Kuan Chen, Yu-Ting Lai, Siao-Man Wu, Chi-Tang Mao, Junjie Chen, Mei-Yeh Jade Lu, Meng‐Ru Ho, Randall B. Widelitz, Chih‐Feng Chen, Cheng‐Ming Chuong, Wen-Hsiung Li
Software Mentions: 1
Published: about 12 years ago

10.1098/rsob.150190

Transcriptional and phenotypical heterogeneity of Trypanosoma cruzi cell populations
Cited by: 17
Author(s): Víctor Seco-Hidalgo, Luis Miguel De Pablos, Antonio Osuna
Software Mentions: 1
Published: almost 11 years ago

10.1186/gm279

Classification of unknown primary tumors with a data-driven method based on a large microarray reference database
Cited by: 12
Author(s): K. Ojala, Sami Kilpinen, Olli Kallioniemi
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0035659

Proteome-Wide Analysis of Functional Divergence in Bacteria: Exploring a Host of Ecological Adaptations
Cited by: 16
Author(s): Brian E. Caffrey, Tom A. Williams, Xiaowei Jiang, Christina Toft, Karsten Hokamp, Mario A. Fares
Software Mentions: 1
Published: over 14 years ago

10.1038/s41598-021-86548-w

Systemic alterations play a dominant role in epigenetic predisposition to breast cancer in offspring of obese fathers and is transmitted to a second generation
Cited by: 1
Author(s): Camile Castilho Fontelles, Raquel Santana da Cruz, Alexandra K. Gonsiewski, Ersilia Barin, Volkan Tekmen, Lü Jin, M. Idalia Cruz, Olivier Loudig, Anni Wärri, Sônia de Assis
Software Mentions: 1
Published: over 5 years ago

10.3389/fendo.2021.598656

Seven Novel Genes Related to Cell Proliferation and Migration of VHL-Mutated Pheochromocytoma
Cited by: 6
Author(s): Shuai Gao, Longfei Liu, Zhuolin Li, Yingxian Pang, Jiaqi Shi, Fenlu Zhu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12967-016-0855-3

Testing chemotherapy efficacy in HER2 negative breast cancer using patient-derived spheroids
Cited by: 37
Author(s): Kathrin Halfter, Oliver Hoffmann, Nina Ditsch, Mareike Ahne, Frank Arnold, Stefan Paepke, Dieter Grab, Ingo Bauerfeind, Barbara Mayer
Software Mentions: 1
Published: over 10 years ago

10.1186/s13073-017-0497-y

Integrated Bayesian analysis of rare exonic variants to identify risk genes for schizophrenia and neurodevelopmental disorders
Cited by: 78
Author(s): Hoang Nguyen, Julien Bryois, April Kim, Amanda Dobbyn, Laura Huckins, Ana B. Muñoz-Manchado, Douglas M. Ruderfer, Giulio Genovese, Menachem Fromer, Xiaowei Xu, Dalila Pinto, Sten Linnarsson, Matthijs Verhage, August B. Smit, Jens Hjerling-Leffler, Joseph D. Buxbaum, Christina M. Hultman, Pamela Sklar, Shaun Purcell, Kasper Lage, Xin He, Patrick F. Sullivan, Eli A. Stahl
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms21113755

Identification and Expression Profiling of Toll-Like Receptors of Brown Trout (Salmo trutta) during Proliferative Kidney Disease
Cited by: 13
Author(s): Arun Sudhagar, Mansour El-Matbouli, Gokhlesh Kumar
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-11-332

Understanding the evolutionary relationships and major traits of Bacillus through comparative genomics
Cited by: 142
Author(s): Luis David Alcaraz, Gabriel Moreno‐Hagelsieb, Luis E. Eguiarte, Valeria Souza, Luis Herrera-Estrella, Gabriela Olmedo
Software Mentions: 1
Published: over 16 years ago

10.1186/s13072-016-0053-9

The histone demethylase dKDM5/LID interacts with the SIN3 histone deacetylase complex and shares functional similarities with SIN3
Cited by: 34
Author(s): Ambikai Gajan, Valerie L. Barnes, Mengying Liu, Nirmalya Saha, Lori A. Pile
Software Mentions: 1
Published: over 10 years ago

10.3390/microorganisms9081689

Deciphering the Endophytic and Rhizospheric Microbial Communities of a Metallophyte Commelina communis in Different Cu-Polluted Soils
Cited by: 4
Author(s): Li He, Yi Ren, Weimin Zeng, Xueling Wu, Li Shen, Runlan Yu, Yuandong Liu, Jiaokun Li
Software Mentions: 1
Published: about 5 years ago

10.3390/jof7090764

Variations in the Community Structure of Fungal Microbiota Associated with Apple Fruit Shaped by Fruit Bagging-Based Practice
Cited by: 1
Author(s): Punda Khwantongyim, Somying Wansee, Xi Lu, Wei Zhang, Guangyu Sun
Software Mentions: 1
Published: almost 5 years ago

10.1093/gigascience/giy124

Cost-effective assembly of the African wild dog (Lycaon pictus) genome using linked reads
Cited by: 19
Author(s): Ellie E. Armstrong, Ryan W. Taylor, Stefan Prost, Peter Blinston, Esther van der Meer, Hillary Madzikanda, Olivia Mufute, Roseline Mandisodza‐Chikerema, John Stuelpnagel, Claudio Sillero‐Zubiri, Dmitri A. Petrov
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2164-10-296

Genomic diversity of pathogenic Escherichia coli of the EHEC 2 clonal complex
Cited by: 24
Author(s): Galeb Abu-Ali, David W. Lacher, Lukas M. Wick, Weihong Qi, Thomas S. Whittam
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0117261

CD14 and Complement Crosstalk and Largely Mediate the Transcriptional Response to Escherichia coli in Human Whole Blood as Revealed by DNA Microarray
Cited by: 15
Author(s): Corinna Lau, Ståle Nygård, Hilde Fure, Ole Kristoffer Olstad, Matthew T. G. Holden, Knut Tore Lappegård, Ole-Lars Brekke, Terje Espevik, Eivind Hovig, Tom Eirik Mollnes
Software Mentions: 1
Published: over 11 years ago

10.1186/s12864-015-2151-7

Comprehensive characterization of a time-course transcriptional response induced by autotoxins in Panax ginseng using RNA-Seq
Cited by: 23
Author(s): Bin Wu, Qiliang Long, Yuan Gao, Zi Wang, Tianwei Shao, Yanan Liu, Yong Li, Wanlong Ding
Software Mentions: 1
Published: almost 11 years ago

10.1186/s13148-018-0541-9

Epigenome-wide DNA methylation regulates cardinal pathological features of psoriasis
Cited by: 66
Author(s): Aditi Chandra, Swapan Senapati, Sudipta Roy, Gobinda Chatterjee, Raghunath Chatterjee
Software Mentions: 1
Published: about 8 years ago

10.1098/rsob.200265

Ageing genetic signature of hypersomatotropism
Cited by: 0
Author(s): Abdalla Elbialy
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-94060-4

Observing the silent world under COVID-19 with a comprehensive impact analysis based on human mobility
Cited by: 8
Author(s): Shaobin Wang, Yun Tong, Yupeng Fan, Haimeng Liu, Jun Wu, Zheye Wang, Chuanglin Fang
Software Mentions: 1
Published: about 5 years ago

10.1111/cei.13403

Expression profiling of single cells and patient cohorts identifies multiple immunosuppressive pathways and an altered NK cell phenotype in glioblastoma
Cited by: 48
Author(s): Helen J. Close, Lucy F. Stead, Jérémie Nsengimana, Katrina A. Reilly, Alastair P. Droop, Heiko Wurdak, Ryan Mathew, Robert Corns, Julia Newton‐Bishop, Alan Melcher, Susan Short, Graham P. Cook, Erica Wilson
Software Mentions: 1
Published: over 6 years ago

10.1002/mbo3.731

Comparative genomics of theKomagataeibacterstrains—Efficient bionanocellulose producers
Cited by: 47
Author(s): Małgorzata Ryngajłło, Katarzyna Kubiak, Marzena Jędrzejczak-Krzepkowska, Paulina Jacek, Stanisław Bielecki
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0010167

Increased Adherence and Expression of Virulence Genes in a Lineage of Escherichia coli O157:H7 Commonly Associated with Human Infections
Cited by: 72
Author(s): Galeb Abu-Ali, Lindsey Ouellette, Scott T. Henderson, David W. Lacher, James T. Riordan, Thomas S. Whittam, Shannon D. Manning
Software Mentions: 1
Published: over 16 years ago

10.1186/s12864-019-6119-x

A high-resolution genomic composition-based method with the ability to distinguish similar bacterial organisms
Cited by: 4
Author(s): Yizhuang Zhou, Wenting Zhang, Huixian Wu, Kai Huang, Junfei Jin
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12014-021-09314-0

Quantitative proteomics analysis of lysine 2-hydroxyisobutyrylation in IgA nephropathy
Cited by: 5
Author(s): Shaoying Huang, Fengping Zheng, Lin Hua, Xianqing Zhou, Huixuan Xu, Cantong Zhang, Weier Dai, Berthold Hocher, Xinzhou Zhang, Donge Tang, Yong Dai
Software Mentions: 1
Published: over 5 years ago

10.3390/nu10101510

Altered Dairy Protein Intake Does Not Alter Circulatory Branched Chain Amino Acids in Healthy Adults: A Randomized Controlled Trial
Cited by: 14
Author(s): Utpal Kumar Prodhan, Amber M. Milan, Eric B. Thorstensen, Matthew P. G. Barnett, Ralph Stewart, Jocelyne Benatar, David Cameron‐Smith
Software Mentions: 1
Published: almost 8 years ago

10.1099/mgen.0.000066

First insight into the faecal microbiota of the high Arctic muskoxen (Ovibos moschatus)
Cited by: 17
Author(s): Alejandro Salgado-Flores, Mathias Bockwoldt, Live Heldal Hagen, Phillip B. Pope, Monica A. Sundset
Software Mentions: 1
Published: about 10 years ago

10.1099/mgen.0.000287

Co-existence of multiple distinct lineages in Vibrio parahaemolyticus serotype O4:K12
Cited by: 0
Author(s): Lin Zhao, Hongyou Chen, Xavier Didelot, Zhenpeng Li, Yinghui Li, Mei‐Ling Chen, Yu Du, Hongqun Zhao, Jie Li, Qinghua Hu, Biao Kan, Min Chen, Bo Pang
Software Mentions: 1
Published: almost 6 years ago

10.1264/jsme2.ME20081

Comparative Analysis of Microbial Communities in Fronds and Roots of Three Duckweed Species: Spirodela polyrhiza, Lemna minor, and Lemna aequinoctialis
Cited by: 15
Author(s): Tomoki Iwashita, Yasuhiro Tanaka, Hideyuki Tamaki, Yasuko Yoneda, Ayaka Makino, Yuka Tateno, Li Yan, Tadashi Toyama, Yoichi Kamagata, Koji Mori
Software Mentions: 1
Published: over 6 years ago

10.1186/s40249-021-00821-8

Gut microbiota signatures in Schistosoma japonicum infection-induced liver cirrhosis patients: a case–control study
Cited by: 11
Author(s): Qifeng Gui, Huilin Jin, Feng Zhu, Haifeng Lü, Qin Zhang, Jia Xu, Yunmei Yang, Chi Xiao
Software Mentions: 1
Published: over 5 years ago

10.1186/s12934-016-0577-5

Genome-wide Escherichia coli stress response and improved tolerance towards industrially relevant chemicals
Cited by: 45
Author(s): Martin Holm Rau, Patricia Calero, Rebecca M. Lennen, Katherine S. Long, Alex Toftgaard Nielsen
Software Mentions: 1
Published: almost 10 years ago

10.3390/insects11080543

Functional Variation in Dipteran Gut Bacterial Communities in Relation to Their Diet, Life Cycle Stage and Habitat
Cited by: 12
Author(s): Rebekka Sontowski, Nicole M. van Dam
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2164-10-200

Genome wide expression analysis of CBS domain containing proteins in Arabidopsis thaliana (L.) Heynh and Oryza sativa L. reveals their developmental and stress regulation
Cited by: 98
Author(s): Hemant R. Kushwaha, Anil Kumar Singh, Sudhir K. Sopory, Sneh L. Singla‐Pareek, Ashwani Pareek
Software Mentions: 1
Published: over 17 years ago

10.1038/s41598-021-97338-9

Global analysis of lysine acetylation in soybean leaves
Cited by: 8
Author(s): Li Geng, Bin Zheng, Wei Zhao, Ting-Hu Ren, Xinghui Zhang, Tangyuan Ning, Peng Liu
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2164-13-359

The ribonuclease Dis3 is an essential regulator of the developmental transcriptome
Cited by: 32
Author(s): Dong Hou, Miriam Osés Ruiz, Erik D. Andrulis
Software Mentions: 1
Published: about 14 years ago

10.1186/s12014-018-9214-0

Differential analysis of quantitative proteome and acetyl-proteome profiling between premenopausal and postmenopausal ovarian tissues
Cited by: 1
Author(s): Jun Yi, Huatianshu Hu, Peipei Shi, Shuangshuang Song, Jing Zhao, Lan Xu, Weining Yang, Bin Li, Zhu Jin, Shien Zou
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12014-020-09279-6

Effects of cryopreservation and long-term culture on biological characteristics and proteomic profiles of human umbilical cord-derived mesenchymal stem cells
Cited by: 19
Author(s): Xufeng Fu, Bo Xu, Jiang Jiang, Xing Du, Xiaoli Yu, Yaping Yan, Shanshan Li, Briauna Marie Inglis, Huiming Ma, Hongyan Wang, Xiuying Pei, Wei Si
Software Mentions: 1
Published: over 6 years ago

10.1111/1751-7915.13835

Blocking utilization of major plant biomass polysaccharides leads Aspergillusniger towards utilization of minor components
Cited by: 6
Author(s): Roland S. Kun, Sandra Garrigues, Marcos Di Falco, Adrian Tsang, Ronald P. de Vries
Software Mentions: 1
Published: about 5 years ago

10.1172/jci.insight.143379

Brd4 modulates diet-induced obesity via PPARγ-dependent Gdf3 expression in adipose tissue macrophages
Cited by: 10
Author(s): Xiangming Hu, Xingchen Dong, Li Guo, Yanheng Chen, Jinjing Chen, Xian He, Hao Sun, Dong-Hyun Kim, Jongsook Kim Kemper, Linfeng Chen
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-015-2258-x

Genome-wide analysis of the basic leucine zipper (bZIP) transcription factor gene family in six legume genomes
Cited by: 69
Author(s): Zhihui Wang, Ke Cheng, Ling‐Shu Wan, Liying Yan, Huifang Jiang, Liu S, Yong Lei, Boshou Liao
Software Mentions: 1
Published: almost 11 years ago

10.1172/jci.insight.150114

Lipin 1 modulates mRNA splicing during fasting adaptation in liver
Cited by: 4
Author(s): Huan Wang, Tracey W. Chan, Ajay A. Vashisht, Brian G. Drew, Anna C. Calkin, Thurl E. Harris, James A. Wohlschlegel, Xinshu Xiao, Karen Reue
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12864-019-5737-7

Comparative proteomic analysis of okra (Abelmoschus esculentus L.) seedlings under salt stress
Cited by: 36
Author(s): Yihua Zhan, Qingfei Wu, Yue Chen, Mengling Tang, Chendong Sun, Junwei Sun, Chenliang Yu
Software Mentions: 1
Published: over 7 years ago

10.1186/s13287-017-0688-x

Restoring the quantity and quality of elderly human mesenchymal stem cells for autologous cell-based therapies
Cited by: 73
Author(s): Travis J. Block, Milos Marinkovic, Olivia N. Tran, Aaron O. Gonzalez, Amanda Marshall, David D. Dean, Xiao Dong Chen
Software Mentions: 1
Published: almost 9 years ago

10.1074/jbc.M114.562389

The Nuclear Localization of γ-Tubulin Is Regulated by SadB-mediated Phosphorylation
Cited by: 23
Author(s): Greta Eklund, Stefan Lang, Johan Glindre, Åsa Ehlén, María Alvarado-Kristensson
Software Mentions: 1
Published: about 12 years ago

10.3390/ijms21144819

Transcriptome and Hormone Analyses Revealed Insights into Hormonal and Vesicle Trafficking Regulation among Olea europaea Fruit Tissues in Late Development
Cited by: 7
Author(s): B. Briegas, Jorge Corbacho, M.C. Parra-Lobato, Miguel A. Paredes, Juana Labrador, Mercedes Gallardo, M.C. Gómez-Jiménez
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2164-14-28

An R2R3 MYB transcription factor determines red petal colour in an Actinidia (kiwifruit) hybrid population
Cited by: 72
Author(s): Lena G. Fraser, Alan Seal, Mirco Montefiori, Tony K. McGhie, G.K. Tsang, Paul M. Datson, Elena Hilario, Herbert W. Marsh, J K Dunn, Roger P. Hellens, Kevin Davies, M.A. McNeilage, H Nihal De Silva, Andrew C. Allan
Software Mentions: 1
Published: over 13 years ago

10.18632/oncotarget.17564

Overexpression of a novel candidate oncogene KIF14 correlates with tumor progression and poor prognosis in prostate cancer
Cited by: 38
Author(s): Yixiang Zhang, Yeqing Yuan, Peidong Liang, Zhaoxia Zhang, Xiaojing Guo, Ligang Xia, Yingying Zhao, Xing-sheng Shu, Song Sun, Ying Ying, Yingduan Cheng
Software Mentions: 1
Published: over 9 years ago

10.1111/jvh.12310

Elevated interferon-stimulated gene transcription in peripheral blood mononuclear cells occurs in patients infected with genotype 1 but not genotype 3 hepatitis C virus
Cited by: 6
Author(s): Mark W. Robinson, Rachael Swann, Alex Sigruener, Stephen T. Barclay, Peter R. Mills, John McLauchlan, Arvind H. Patel
Software Mentions: 1
Published: almost 12 years ago

10.3389/fcimb.2020.525335

Integrative and Conjugative Elements of Helicobacter pylori Are Hypothetical Virulence Factors Associated With Gastric Cancer
Cited by: 6
Author(s): Eduardo Mucito-Varela, Gonzalo Castillo-Rojas, Juan J. Calva, Yolanda López‐Vidal
Software Mentions: 1
Published: almost 6 years ago

10.1002/stem.1991

Multipotent Caudal Neural Progenitors Derived from Human Pluripotent Stem Cells That Give Rise to Lineages of the Central and Peripheral Nervous System
Cited by: 78
Author(s): Mark Denham, Kouichi Hasegawa, Trevelyan R. Menheniott, Ben Rollo, Dongcheng Zhang, Shelley R. Hough, Abdullah J Alshawaf, Fabia Febbraro, Samiramis Ighaniyan, Joseph Y.-T. Leung, David A. Elliott, Donald F. Newgreen, Martín F. Pera, Mirella Dottori
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0022548

Stage-Specific Histone Modification Profiles Reveal Global Transitions in the Xenopus Embryonic Epigenome
Cited by: 38
Author(s): Tobias D. Schneider, José M. Arteaga-Salas, Edith Mentele, Róbert Dávid, Dario Nicetto, Axel Imhof, Ralph A.W. Rupp
Software Mentions: 1
Published: about 15 years ago

10.1155/2017/5932706

Isolation and Molecular Characterization of Amniotic Fluid-Derived Mesenchymal Stem Cells Obtained from Caesarean Sections
Cited by: 54
Author(s): Lucas‐Sebastian Spitzhorn, Shaifur Rahman, Laura Schwindt, Huyen-Tran Ho, Wasco Wruck, Martina Bohndorf, Silke Wehrmeyer, Audrey Ncube, Ines Beyer, Carsten Hagenbeck, Percy Balan, Tanja Fehm, James Adjaye
Software Mentions: 1
Published: over 9 years ago

10.1002/sctm.16-0427

Selective Expansion of Skeletal Muscle Stem Cells from Bulk Muscle Cells in Soft Three-Dimensional Fibrin Gel
Cited by: 7
Author(s): Pei‐Wen Zhu, Yalu Zhou, Furen Wu, Yuanfan Hong, Xin Wang, Gajendra S. Shekhawat, Jeffrey Mosenson, Wen Shu Wu
Software Mentions: 1
Published: over 9 years ago

10.1111/jcmm.12819

Micro <scp>RNA</scp> expression profile of human periodontal ligament cells under the influence of Porphyromonas gingivalis <scp>LPS</scp>
Cited by: 37
Author(s): Anqing Du, Sen Zhao, Lingyun Wan, TianTao Liu, Zaoxia Peng, Ziyu Zhou, Zhengyu Liao, Huan Fang
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms21207572

Integrated Analysis of the Transcriptome and Metabolome of Cecropia obtusifolia: A Plant with High Chlorogenic Acid Content Traditionally Used to Treat Diabetes Mellitus
Cited by: 9
Author(s): Jorge David Cadena-Zamudio, Pilar Nicasio-Torres, Juan L. Monribot‐Villanueva, José A. Guerrero-Analco, Enrique Ibarra-Laclette
Software Mentions: 1
Published: almost 6 years ago

10.3390/metabo11040227

Pinus pinaster Early Hormonal Defence Responses to Pinewood Nematode (Bursaphelenchus xylophilus) Infection
Cited by: 10
Author(s): Ana Margarida Rodrigues, Swen Langer, Isabel Carrasquinho, Edmund T. Bergström, Tony R. Larson, Jane Thomas‐Oates, Carla António
Software Mentions: 1
Published: over 5 years ago

10.1002/sctm.20-0199

Human induced pluripotent stem cell-derived lung organoids in an ex vivo model of the congenital diaphragmatic hernia fetal lung
Cited by: 21
Author(s): Shaun M. Kunisaki, Guihua Jiang, Juan Carlos Biancotti, Kenneth K. Y. Ho, Briana R. Dye, Allen Liu, Jason R. Spence
Software Mentions: 1
Published: almost 6 years ago

10.18632/oncotarget.18664

miR-331-3p and Aurora Kinase inhibitor II co-treatment suppresses prostate cancer tumorigenesis and progression
Cited by: 19
Author(s): Michael R. Epis, Keith M. Giles, Dianne J. Beveridge, Kirsty Richardson, Patrick A. Candy, Lisa M. Stuart, Jacqueline M. Bentel, Ronald J. Cohen, Peter J. Leedman
Software Mentions: 1
Published: about 9 years ago

10.3390/metabo10120516

Exploratory Analysis of Commercial Olive-Based Dietary Supplements Using Untargeted and Targeted Metabolomics
Cited by: 2
Author(s): Mar Garcia-Aloy, Nelli Groff, Domenico Masuero, Mauro Nisi, Álvaro Junio Pereira Franco, Furio Battelini, Urška Vrhovšek, Fulvio Mattivi
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0037945

DNA Barcoding the Native Flowering Plants and Conifers of Wales
Cited by: 140
Author(s): Natasha de Vere, Tim C. G. Rich, Col R. Ford, Sarah A. Trinder, Charlotte Long, Chris W. Moore, Satterthwaite Danielle, Helena Davies, Joël Allainguillaume, Sandra Ronca, Tatiana V. Tatarinova, Garbett Hannah, Kevin J. Walker, M. J. Wilkinson
Software Mentions: 1
Published: over 14 years ago

10.7150/thno.41000

The Effect of Cardiogenic Factors on Cardiac Mesenchymal Cell Anti-Fibrogenic Paracrine Signaling and Therapeutic Performance
Cited by: 6
Author(s): Justin S. Heidel, Annalara G. Fischer, Xian Liang Tang, Ghazal Sadri, Wen Jian Wu, Claudiu R. Moisa, Heather Stowers, Neel Sandella, Marcin Wysoczynski, Shizuka Uchida, Joseph B. Moore
Software Mentions: 1
Published: over 6 years ago

10.1128/JCM.00881-16

Resolution of a Protracted Serogroup B Meningococcal Outbreak with Whole-Genome Sequencing Shows Interspecies Genetic Transfer
Cited by: 11
Author(s): Robert M. Mulhall, Carina Brehony, Lois O’Connor, Kenneth Meyler, Keith A. Jolley, James E. Bray, Désirée E. Bennett, Martin Maiden, Robert Cunney
Software Mentions: 1
Published: almost 10 years ago

10.18632/aging.103395

Identification of immunological subtypes of hepatocellular carcinoma with expression profiling of immune-modulating genes
Cited by: 11
Author(s): Di Cao, Meng-Ke Chen, Qingfeng Zhang, Yufeng Zhou, Mei‐Yin Zhang, Shi-Juan Mai, Yaojun Zhang, Minshan Chen, Xiaoxing Li, Huiyun Wang
Software Mentions: 1
Published: about 6 years ago

10.3390/metabo10100383

5-CQA and Mangiferin, Two Leaf Biomarkers of Adaptation to Full Sun or Shade Conditions in Coffea arabica L.
Cited by: 4
Author(s): Teerarat Duangsodsri, Luc Villain, Ialy Rojo Vestalys, Serge Michalet, Cécile Abdallah, Jean‐Christophe Breitler, Mélanie Bordeaux, Andrés Mauricio Villegas, Marson Raherimandimby, Laurent Legendre, Hervé Etienne, Benoît Bertrand, Claudine Campa
Software Mentions: 1
Published: almost 6 years ago

10.7150/thno.42347

Homozygous MESP1 knock-in reporter hESCs facilitated cardiovascular cell differentiation and myocardial infarction repair
Cited by: 11
Author(s): Lin Wang, Fengzhi Zhang, Fuyu Duan, Rujin Huang, Xi Chen, Ming Jia, Jie Na
Software Mentions: 1
Published: over 6 years ago

10.1186/ar3457

The gene expression profile of preclinical autoimmune arthritis and its modulation by a tolerogenic disease-protective antigenic challenge
Cited by: 8
Author(s): Hua Yu, Chi-Wei Lu, Ming Tan, Kamal D. Moudgil
Software Mentions: 1
Published: over 15 years ago

10.3389/fcell.2015.00015

Epigenetic reprogramming and re-differentiation of a Ewing sarcoma cell line
Cited by: 21
Author(s): Joseph B. Moore, David M. Loeb, Kyung U. Hong, Poul H. Sorensen, Timothy J. Triche, David W. Lee, Michael I. Barbato, Robert J. Arceci
Software Mentions: 1
Published: over 11 years ago

10.3390/ijms22031227

iPSC-Derived Hereditary Breast Cancer Model Reveals the BRCA1-Deleted Tumor Niche as a New Culprit in Disease Progression
Cited by: 13
Author(s): Lucie Portier, Christophe Desterke, Diana Chaker, Noufϊssa Oudrhiri, Afag Asgarova, Fatima Dkhissi, Ali G. Turhan, Annelise Bennaceur-Griscelli, Frank Griscelli
Software Mentions: 1
Published: over 5 years ago

10.1111/1759-7714.13626

Multivariate gene expression‐based survival predictor model in esophageal adenocarcinoma
Cited by: 7
Author(s): Maoyuan Zhao, Jingsong Wang, Meng Yuan, Zeliang Ma, Yi Bao, Zhouguang Hui
Software Mentions: 1
Published: about 6 years ago

10.3389/fgene.2020.00873

Dissecting the Molecular Function of Triticum aestivum STI Family Members Under Heat Stress
Cited by: 10
Author(s): Shaloo Meena, Sohini Deb, Harsha Samtani, Paramjit Khurana
Software Mentions: 1
Published: about 6 years ago

10.1186/s13075-019-2067-8

Unique primed status of microglia under the systemic autoimmune condition of lupus-prone mice
Cited by: 15
Author(s): Akihiro Nomura, Daisuke Noto, Goh Murayama, Asako Chiba, Sachiko Miyake
Software Mentions: 1
Published: almost 7 years ago

10.3389/fcell.2020.571948

The Adipose Microenvironment Dysregulates the Mammary Myoepithelial Cells and Could Participate to the Progression of Breast Cancer
Cited by: 10
Author(s): Laëtitia Delort, Juliette Cholet, Caroline Decombat, Marion Vermerie, Charles Dumontet, Florence Castelli, François Fenaille, Céline Auxenfans, Adrien Rossary, Florence Caldefie-Chézet
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1000767

Universal Features of Post-Transcriptional Gene Regulation Are Critical for Plasmodium Zygote Development
Cited by: 236
Author(s): Gunnar R. Mair, Edwin Lasonder, Lindsey S. Garver, Blandine Franke-Fayard, Céline Carret, J. Wiegant, Roeland W. Dirks, George Dimopoulos, Chris J. Janse, Andrew P. Waters
Software Mentions: 1
Published: over 16 years ago

10.1038/s41598-018-21591-8

In silico guided reconstruction and analysis of ICAM-1-binding var genes from Plasmodium falciparum
Cited by: 4
Author(s): Eilidh Carrington, Thomas D. Otto, Tadge Szestak, Frank Lennartz, Matthew K. Higgins, Chris Newbold, Alister G. Craig
Software Mentions: 1
Published: over 8 years ago

10.1038/srep35669

Lipid remodelling in the reef-building honeycomb worm, Sabellaria alveolata, reflects acclimation and local adaptation to temperature
Cited by: 21
Author(s): Anna P. Muir, Flávia L. D. Nunes, Stanislas F. Dubois, Fabrice Pernet
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep43417

Population genomics of an endemic Mediterranean fish: differentiation by fine scale dispersal and adaptation
Cited by: 66
Author(s): Carlos Carreras, Víctor Ordóñez, Lorenzo Zane, Claudia Kruschel, Ina Nasto, Enrique Macpherson, Marta Pascual
Software Mentions: 1
Published: over 9 years ago

10.1038/srep35688

Machine-learned pattern identification in olfactory subtest results
Cited by: 12
Author(s): Jörn Lötsch, Thomas Hummel, Alfred Ultsch
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep33706

Transcriptomic comparison between Brassica oleracea and rice (Oryza sativa) reveals diverse modulations on cell death in response to Sclerotinia sclerotiorum
Cited by: 8
Author(s): Jiaqin Mei, Yijuan Ding, Yuehua Li, Chaobo Tong, Hao Du, Yang Yu, Heng Wan, Qing Xiong, Jingyin Yu, Liu S, Jiana Li, Wei Qian
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep42165

Physiological and transcriptomic analyses reveal a response mechanism to cold stress in Santalum album L. leaves
Cited by: 55
Author(s): Xinhua Zhang, Jaime A. Teixeira da Silva, Meiyun Niu, Mingzhi Li, Chunmei He, Zhao Jian-Gao, Songjun Zeng, Jun Duan, Guohua Ma
Software Mentions: 1
Published: over 9 years ago

10.1038/srep43421

Abnormalities in A-to-I RNA editing patterns in CNS injuries correlate with dynamic changes in cell type composition
Cited by: 34
Author(s): Nurit Gal-Mark, Lea Shallev, Sahar Sweetat, Manouchehr Barak, Jin Billy Li, Erez Y. Levanon, Eli Eisenberg, Oded Behar
Software Mentions: 1
Published: over 9 years ago

10.1038/srep31745

Fine needle aspirate flow cytometric phenotyping characterizes immunosuppressive nature of the mesothelioma microenvironment
Cited by: 23
Author(s): Patrick H. Lizotte, Robert E. Jones, Lauren Keogh, Elena Ivanova, Hongye Liu, Mark M. Awad, Peter S. Hammerman, Ritu R. Gill, William G. Richards, David A. Barbie, Adam J. Bass, Raphael Bueno, Jessie M. English, Mark Bittinger, Kwok-Kin Wong
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-017-04251-1

Proteomic analysis reveals large amounts of decomposition enzymes and major metabolic pathways involved in algicidal process of Trametes versicolor F21a
Cited by: 15
Author(s): Xueyan Gao, Congyan Wang, Wei Dai, Shenrong Ren, Fang Tao, Xueli He, Guomin Han, Wei Wang
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-15660-7

Fungal networks serve as novel ecological routes for enrichment and dissemination of antibiotic resistance genes as exhibited by microcosm experiments
Cited by: 18
Author(s): Rashid Nazir, Ju-Pei Shen, Jun‐Tao Wang, Hang‐Wei Hu, Ji‐Zheng He
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-16082-1

Microbial communities in the native habitats of Agaricus sinodeliciosus from Xinjiang Province revealed by amplicon sequencing
Cited by: 18
Author(s): Jiemin Zhou, Xuming Bai, Rui-Lin Zhao
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-018-23090-2

A proteomic insight into vitellogenesis during tick ovary maturation
Cited by: 26
Author(s): Marina Amaral Xavier, Lucas Tirloni, Antônio Frederico Michel Pinto, Jolene K. Diedrich, John R. Yates, Albert Mulenga, Carlos Logullo, Itabajara da Silva Vaz, Adriana Seixas, Carlos Termignoni
Software Mentions: 1
Published: over 8 years ago

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