cran: gplots | Projects | Ecosyste.ms: Papers

10.1186/s12870-015-0414-8

Histone chaperones in Arabidopsis and rice: genome-wide identification, phylogeny, architecture and transcriptional regulation
Cited by: 41
Author(s): Amit Kumar Tripathi, Kundan Singh, Ashwani Pareek, Sneh L. Singla‐Pareek
Software Mentions: 1
Published: over 11 years ago

10.3389/fimmu.2019.02866

Clostridioides difficile Colonization Is Differentially Associated With Gut Microbiome Profiles by Infant Feeding Modality at 3–4 Months of Age
Cited by: 20
Author(s): Kelsea M. Drall, Hein Min Tun, Nadia Morales-Lizcano, Theodore Konya, David S. Guttman, Catherine J. Field, Rupasri Mandal, David S. Wishart, Allan B. Becker, Meghan B. Azad, Diana L. Lefebvre, Piush J. Mandhane, Theo J. Moraes, Malcolm R. Sears, Stuart E. Turvey, Padmaja Subbarao, James A. Scott, Anita L. Kozyrskyj
Software Mentions: 1
Published: over 6 years ago

10.3390/cells10061495

Phenotypic Characterization by Single-Cell Mass Cytometry of Human Intrahepatic and Peripheral NK Cells in Patients with Hepatocellular Carcinoma
Cited by: 6
Author(s): Yuichi Yoshida, Sachiyo Yoshio, Taiji Yamazoe, Taizo Mori, Yuriko Tsustui, Hironari Kawai, Shiori Yoshikawa, Takasuke Fukuhara, Tomoyoshi Okamoto, Yoshihiro Ono, Yu Takahashi, Ryuki Hashida, Takumi Kawaguchi, Akinobu Taketomi, Tatsuya Kanto
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2015.00661

RNA-Seq analysis identifies key genes associated with haustorial development in the root hemiparasite Santalum album
Cited by: 38
Author(s): Xinhua Zhang, Oliver Berkowitz, Jaime A. Teixeira da Silva, Muhan Zhang, Guohua Ma, James Whelan, Jun Duan
Software Mentions: 1
Published: about 11 years ago

10.3389/fmicb.2018.03138

Dynamics of Gut Microbiome in Giant Panda Cubs Reveal Transitional Microbes and Pathways in Early Life
Cited by: 25
Author(s): Min Guo, Jianwei Chen, Qiongfang Li, Ying Fu, Guangyi Fan, Jinmin Ma, Ling Peng, Liyun Zeng, Jing Chen, Yayu Wang, Simon Ming‐Yuen Lee
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2020.585614

Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in the Phytopathogenic Fungus Botrytis cinerea
Cited by: 9
Author(s): Yang Xu, Xiaoxia Li, Wenxing Liang, Mengjie Liu
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-72311-0

The phosphoproteomic responses of duck (Cairna moschata) to classical/novel duck reovirus infections in the spleen tissue
Cited by: 5
Author(s): Tao Yun, Jionggang Hua, Weicheng Ye, Na Zheng, Liu Chen, Cun Zhang
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-71967-y

Unique repertoire of anti-carbohydrate antibodies in individual human serum
Cited by: 13
Author(s): Ralph N D Luetscher, Tanya R. McKitrick, Chao Gao, Akul Y. Mehta, Alyssa M McQuillan, Robert Kardish, Kayluz Frias Boligan, Xuezheng Song, Lenette L. Lu, Jamie Heimburg-Molinaro, Stephan von Gunten, Galit Alter, Richard D. Cummings
Software Mentions: 1
Published: almost 6 years ago

10.3390/cells9041003

Sofosbuvir Activates EGFR-Dependent Pathways in Hepatoma Cells with Implications for Liver-Related Pathological Processes
Cited by: 9
Author(s): Denisa Bojkova, Sandra Westhaus, Rui Costa, Lejla Timmer, Nora Funkenberg, Marek Korencak, Hendrik Streeck, Florian W. R. Vondran, Ruth Broering, Stefan Heinrichs, Karl S. Lang, Sandra Ciesek
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2017.00404

Small RNA Sequencing Reveals Differential miRNA Expression in the Early Development of Broccoli (Brassica oleracea var. italica) Pollen
Cited by: 8
Author(s): Hui Li, Yu Wang, Mei Wu, Lihong Li, Chuan Jin, Qingli Zhang, Chengbin Chen, Wenqin Song, Chunguo Wang
Software Mentions: 1
Published: over 9 years ago

10.1038/s41419-021-03439-8

Akt kinase LANCL2 functions as a key driver in EGFR-mutant lung adenocarcinoma tumorigenesis
Cited by: 12
Author(s): Yu‐Qing Lou, Jianlin Xu, Yanwei Zhang, Wei Zhang, Xueyan Zhang, Ping Gu, Hua Zhong, Huimin Wang, Jun Lü, Baohui Han
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22179513

Follistatin-Like-1 (FSTL1) Is a Fibroblast-Derived Growth Factor That Contributes to Progression of Chronic Kidney Disease
Cited by: 6
Author(s): Nicholas Maksimowski, Xuewen Song, Eun Hui Bae, Heather N. Reich, Rohan John, York Pei, James W. Scholey
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22179402

Comparative Proteomic Analysis of Tolerant and Sensitive Varieties Reveals That Phenylpropanoid Biosynthesis Contributes to Salt Tolerance in Mulberry
Cited by: 17
Author(s): Tiantian Gan, Ziwei Lin, Lijun Bao, Tian Hui, Xiaopeng Cui, Yanzhen Huang, Hexin Wang, Chao Su, Jiao Feng, Minjuan Zhang, Yonghua Qian
Software Mentions: 1
Published: about 5 years ago

10.1186/s13148-018-0541-9

Epigenome-wide DNA methylation regulates cardinal pathological features of psoriasis
Cited by: 66
Author(s): Aditi Chandra, Swapan Senapati, Sudipta Roy, Gobinda Chatterjee, Raghunath Chatterjee
Software Mentions: 1
Published: about 8 years ago

10.3389/fpls.2017.01062

The C4 Model Grass Setaria Is a Short Day Plant with Secondary Long Day Genetic Regulation
Cited by: 16
Author(s): Andrew N. Doust, Margarita Mauro-Herrera, John G. Hodge, Jessica Stromski
Software Mentions: 1
Published: about 9 years ago

10.3389/fpls.2020.01264

Rootstock–Scion Interaction Affects Cadmium Accumulation and Tolerance of Malus
Cited by: 19
Author(s): Jun He, Jiangtao Zhou, Huixue Wan, Xiaolei Zhuang, Huifeng Li, Sijun Qin, Deguo Lyu
Software Mentions: 1
Published: about 6 years ago

10.1186/s12870-018-1569-x

Genome-wide identification and localization of chalcone synthase family in soybean (Glycine max [L]Merr)
Cited by: 34
Author(s): Arun Kumaran Anguraj Vadivel, Kevin Krysiak, Gang Tian, Sangeeta Dhaubhadel
Software Mentions: 1
Published: almost 8 years ago

10.3389/fpls.2019.00509

Pinus Susceptibility to Pitch Canker Triggers Specific Physiological Responses in Symptomatic Plants: An Integrated Approach
Cited by: 16
Author(s): Joana Amaral, Bárbara Correia, Carla António, Ana Margarida Rodrigues, Aurelio Gómez-Cádenas, Luís Valledor, Robert D. Hancock, Artur Alves, Glória Pinto
Software Mentions: 1
Published: over 7 years ago

10.1098/rsob.200265

Ageing genetic signature of hypersomatotropism
Cited by: 0
Author(s): Abdalla Elbialy
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0063059

Analysis of Nitrification Efficiency and Microbial Community in a Membrane Bioreactor Fed with Low COD/N-Ratio Wastewater
Cited by: 21
Author(s): Jinxing Ma, Zhiwei Wang, Chaowei Zhu, Shumeng Liu, Qiaoying Wang, Zhichao Wu
Software Mentions: 1
Published: over 13 years ago

10.3389/fmicb.2017.00369

Genotypes Associated with Listeria monocytogenes Isolates Displaying Impaired or Enhanced Tolerances to Cold, Salt, Acid, or Desiccation Stress
Cited by: 108
Author(s): Patricia Hingston, Jessica Chen, Bhavjinder K. Dhillon, Chad R. Laing, Claire Bertelli, Victor P. J. Gannon, Taurai Tasara, Kevin Allen, Fiona S. L. Brinkman, Lisbeth Truelstrup Hansen, Siyun Wang
Software Mentions: 1
Published: over 9 years ago

10.1186/s12870-017-1183-3

Transcriptomic analysis of wound xylem formation in Pinus canariensis
Cited by: 17
Author(s): Víctor Chano, Carmen Collada, Álvaro Soto
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12866-017-1047-x

Insights into the Geobacillus stearothermophilus species based on phylogenomic principles
Cited by: 39
Author(s): Sara Burgess, Steve Flint, D. Lindsay, Murray P. Cox, Patrick J. Biggs
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0037933

Prenatal Famine and Genetic Variation Are Independently and Additively Associated with DNA Methylation at Regulatory Loci within IGF2/H19
Cited by: 131
Author(s): Elmar W. Tobi, P. Eline Slagboom, Jenny van Dongen, Dennis Kremer, Aryeh D. Stein, Hein Putter, Bastiaan T. Heijmans, L. H. Lumey
Software Mentions: 1
Published: over 14 years ago

10.3389/fpls.2018.00760

Metabolomics of Early Stage Plant Cell–Microbe Interaction Using Stable Isotope Labeling
Cited by: 30
Author(s): Qiuying Pang, Tong Zhang, Yan Wang, Wenwen Kong, Qijie Guan, Xiufeng Yan, Sixue Chen
Software Mentions: 1
Published: over 8 years ago

10.3389/fpls.2019.01450

Effects of In Vitro Polyploidization on Agronomic Characteristics and Fruit Carotenoid Content; Implications for Banana Genetic Improvement
Cited by: 8
Author(s): Delphine Amah, Angeline van Biljon, Busie Maziya‐Dixon, Maryke Labuschagne, Rony Swennen
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2017.01534

Independent Shifts of Abundant and Rare Bacterial Populations across East Antarctica Glacial Foreland
Cited by: 24
Author(s): Wenkai Yan, Hongmei Ma, Guitao Shi, Yuansheng Li, Bo Sun, Xiang Xiao, Yu Zhang
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms21010278

Changes in Proteome and Protein Phosphorylation Reveal the Protective Roles of Exogenous Nitrogen in Alleviating Cadmium Toxicity in Poplar Plants
Cited by: 29
Author(s): Jin-Liang Huang, Xiaolu Wu, Fengchun Tian, Qi Chen, Pengrui Luo, Fan Zhang, Xueqin Wan, Yu Zhong, Qinglin Liu, Tiantian Lin
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0189032

Route of infection alters virulence of neonatal septicemia Escherichia coli clinical isolates
Cited by: 12
Author(s): Bryan K. Cole, Edgar J. Scott, Marko Ilikj, David Bard, Darrin R. Akins, David W. Dyer, Susana Chávez-Bueno
Software Mentions: 1
Published: over 8 years ago

10.1186/s12866-021-02125-1

Dysbiosis of gut microbiota and its correlation with dysregulation of cytokines in psoriasis patients
Cited by: 32
Author(s): Xinyue Zhang, Lingfei Shi, Ting Sun, Kun Guo, Shuang Geng
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0171856

The influence of sexual activity on the vaginal microbiota and Gardnerella vaginalis clade diversity in young women
Cited by: 70
Author(s): Lenka A Vodstrcil, Jimmy Twin, Suzanne M. Garland, Christopher K. Fairley, Jane S Hocking, Matthew Law, Erica L Plummer, Katherine Fethers, Eric P F Chow, Sepehr N. Tabrizi, Catriona Bradshaw
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-020-72063-x

Rapid growth inhibitory activity of a YafQ-family endonuclease toxin of the Helicobacter pylori tfs4 integrative and conjugative element
Cited by: 2
Author(s): Kwadwo Boampong, Stephanie L Smith, Robin M Delahay
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2021.559925

Immunological Hallmarks of Inflammatory Status in Vaso-Occlusive Crisis of Sickle Cell Anemia Patients
Cited by: 10
Author(s): Alexander Leonardo Silva-Junior, Nadja Pinto Garcia, Evilázio Cunha Cardoso, S Dias, Andréa Monteiro Tarragô, Nelson Abrahim Fraiji, Marcos Antônio Silvestre Gomes, Laurence Rodrigues do Amaral, Andréa Teixeira-Carvalho, Olindo Assis Martins‐Filho, Erich Vinícius De Paula, Allyson Guimarães Costa, Adriana Malheiro
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-11-332

Understanding the evolutionary relationships and major traits of Bacillus through comparative genomics
Cited by: 142
Author(s): Luis David Alcaraz, Gabriel Moreno‐Hagelsieb, Luis E. Eguiarte, Valeria Souza, Luis Herrera-Estrella, Gabriela Olmedo
Software Mentions: 1
Published: over 16 years ago

10.18632/oncotarget.22839

Polycomb protein RING1A limits hematopoietic differentiation in myelodysplastic syndromes
Cited by: 5
Author(s): Anna M. Palau, Anne-Kathrin Garz, Jeannine Diesch, Anabel Zwick, Roberto Malinverni, Vanesa Valero, Katrina M. Lappin, Raquel Casquero, Andreas Lennartsson, Johannes Zuber, Tomàs Navarro, Ken Mills, Katharina Götze, Marcus Buschbeck
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0198943

Evaluation of phenotypic and functional stability of RAW 264.7 cell line through serial passages
Cited by: 177
Author(s): Bartłomiej Taciak, Maciej Białasek, Agata Braniewska, Zuzanna Sas, Paulina Sawicka, Łukasz Kiraga, Tomasz P. Rygiel, Magdalena Król
Software Mentions: 1
Published: about 8 years ago

10.3389/fimmu.2020.590121

Maturation of Monocyte-Derived DCs Leads to Increased Cellular Stiffness, Higher Membrane Fluidity, and Changed Lipid Composition
Cited by: 21
Author(s): Jennifer J. Lühr, Nils Alex, Lukas Amon, Martin Kräter, Markéta Kubánková, Erdinç Sezgin, Christian Lehmann, Lukas Heger, Gordon F. Heidkamp, Ana‐Sunčana Smith, Vasily Zaburdaev, Rainer A. Böckmann, Ilya Levental, Michael L. Dustin, Christian Eggeling, Jochen Guck, Diana Dudziak
Software Mentions: 1
Published: almost 6 years ago

10.1534/g3.115.022137

MicroRNA Maturation and MicroRNA Target Gene Expression Regulation Are Severely Disrupted in Soybeandicer-like1Double Mutants
Cited by: 20
Author(s): Shaun J. Curtin, Jean Michel Michno, Ben Campbell, Javier Gil-Humanes, Sandra M. Mathioni, Reza Hammond, Juan J. Gutiérrez-González, Ryan C. Donohue, Michael B. Kantar, Andrew L. Eamens, Blake C. Meyers, Daniel F. Voytas, Robert M. Stupar
Software Mentions: 1
Published: over 10 years ago

10.1002/brb3.1086

Estriol-mediated neuroprotection in multiple sclerosis localized by voxel-based morphometry
Cited by: 21
Author(s): Allan MacKenzie-Graham, Jenny Brook, Florian Kurth, Yuichiro Itoh, Cassandra Meyer, Michael Montag, He-Jing Wang, Robert M. Elashoff, Rhonda R. Voskuhl
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-020-76836-2

Similarities and differences between the ‘cytokine storms’ in acute dengue and COVID-19
Cited by: 23
Author(s): Shashika Dayarathna, Chandima Jeewandara, Laksiri Gomes, Gayasha Somathilaka, Deshni Jayathilaka, Vimalahan Vimalachandran, Ananda Wijewickrama, Eranga Narangoda, Damayanthi Idampitiya, Graham S. Ogg, Gathsaurie Neelika Malavige
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21062131

Influence of Salt Stress on Growth of Spermosphere Bacterial Communities in Different Peanut (Arachis hypogaea L.) Cultivars
Cited by: 9
Author(s): Yang Xu, Dai Zhang, Lei Dai, Hong Ding, Dunwei Ci, Feifei Qin, Guanchu Zhang, Zhimeng Zhang
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0160924

Kinase Gene Expression Profiling of Metastatic Clear Cell Renal Cell Carcinoma Tissue Identifies Potential New Therapeutic Targets
Cited by: 17
Author(s): Pooja Ghatalia, Eddy S. Yang, Brittany N. Lasseigne, Ryne C. Ramaker, Sara J. Cooper, Dongquan Chen, Sunil Sudarshan, Wei Shi, Arjun S. Guru, Amy Zhao, Tiffiny S. Cooper, Deborah L. Della Manna, Gurudatta Naik, R Myers, Guru Sonpavde
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-020-78484-y

Metabolomics analysis of plasma and adipose tissue samples from mice orally administered with polydextrose and correlations with cecal microbiota
Cited by: 7
Author(s): Markku Saarinen, Olli Kärkkäinen, Kati Hanhineva, Kirsti Tiihonen, Ashley A. Hibberd, Kari Mäkelä, Ghulam Shere Raza, Karl‐Heinz Herzig, Heli Anglenius
Software Mentions: 1
Published: over 5 years ago

10.1186/s12866-015-0610-6

Liver and blood cytokine microenvironment in HCV patients is associated to liver fibrosis score: a proinflammatory cytokine ensemble orchestrated by TNF and tuned by IL-10
Cited by: 32
Author(s): Soriane de Souza-Cruz, Marilú Barbieri Victória, Andréa Monteiro Tarragô, Allyson Guimarães Costa, João Paulo Diniz Pimentel, Ericka Florêncio Pires, Lorene de Paula Araújo, Jordana Grazziela Alves Coelho-dos-Reis, Matheus de Souza Gomes, Laurence Rodrigues do Amaral, Andréa Teixeira-Carvalho, Olindo Assis Martins‐Filho, Flamir da Silva Victória, Adriana Malheiro
Software Mentions: 1
Published: over 10 years ago

10.1534/g3.119.400348

Correlating Genotype and Phenotype in the Asexual Yeast Candida orthopsilosis Implicates ZCF29 in Sensitivity to Caffeine
Cited by: 7
Author(s): Kontxi Martinez de San Vicente, Markus S. Schröder, Lisa Lombardi, Elise Iracane, Geraldine Butler
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0206400

A multi-gene expression profile panel for predicting liver metastasis: An algorithmic approach
Cited by: 4
Author(s): Kanisha Shah, Shanaya Patel, Sheefa Mirza, Rakesh Rawal
Software Mentions: 1
Published: almost 8 years ago

10.1534/g3.120.401735

Gene Copy Number Variation Does Not Reflect Structure or Environmental Selection in Two Recently Diverged California Populations of Suillus brevipes
Cited by: 1
Author(s): Anna Bazzicalupo, Mallory Thomas, Robert M. Mason, Munro-Ehrlich, Sara Branco
Software Mentions: 1
Published: almost 6 years ago

10.18632/oncotarget.9076

Abundant PD-L1 expression in Epstein-Barr Virus-infected gastric cancers
Cited by: 228
Author(s): Sarah Derks, Xiaoyun Liao, Anna Maria Chiaravalli, Xiayu Xu, M. Constanza Camargo, Enrico Solcia, Fausto Sessa, Tania Fleitas, Gordon J. Freeman, Scott J. Rodig, Charles S. Rabkin, Adam J. Bass
Software Mentions: 1
Published: over 10 years ago

10.1186/s12866-016-0762-z

Consensus computational network analysis for identifying candidate outer membrane proteins from Borrelia spirochetes
Cited by: 18
Author(s): Melisha R. Kenedy, Edgar J. Scott, Binu Shrestha, Asha Anand, Henna Iqbal, Justin D. Radolf, David W. Dyer, Darrin R. Akins
Software Mentions: 1
Published: about 10 years ago

10.3390/genes10060444

Methylome-Wide Association Study in Peripheral White Blood Cells Focusing on Central Obesity and Inflammation
Cited by: 13
Author(s): Ana Arpón, Fermı́n I. Milagro, Omar Ramos-López, María L. Mansego, José Ignacio Riezu-Boj, J. Alfredo Martínéz
Software Mentions: 1
Published: about 7 years ago

10.1038/s41419-021-03755-z

Loss of CEP70 function affects acrosome biogenesis and flagella formation during spermiogenesis
Cited by: 8
Author(s): Qiang Liu, Qingping Guo, Wei Guo, Shuangshuang Song, Nan Wang, Xi Chen, Andi Sun, Liying Yan, Jie Qiao
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0224211

Skewed T cell responses to Epstein-Barr virus in long-term asymptomatic kidney transplant recipients
Cited by: 4
Author(s): Cecilia Nakid-Cordero, Nadia Arzouk, Nicolas Gauthier, Nadine Tarantino, Martin Larsen, Sylvain Choquet, Sonia Burrel, Brigitte Autran, Vincent Vieillard, Amélie Guihot
Software Mentions: 1
Published: almost 7 years ago

10.3390/genes11070813

Sensing, Signaling, and Secretion: A Review and Analysis of Systems for Regulating Host Interaction in Wolbachia
Cited by: 19
Author(s): Amelia R.I. Lindsey
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21144819

Transcriptome and Hormone Analyses Revealed Insights into Hormonal and Vesicle Trafficking Regulation among Olea europaea Fruit Tissues in Late Development
Cited by: 7
Author(s): B. Briegas, Jorge Corbacho, M.C. Parra-Lobato, Miguel A. Paredes, Juana Labrador, Mercedes Gallardo, M.C. Gómez-Jiménez
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0137354

Comparative “-omics” in Mycoplasma pneumoniae Clinical Isolates Reveals Key Virulence Factors
Cited by: 44
Author(s): María Lluch‐Senar, Luca Cozzuto, Jaime Cano, Javier Delgado, Verónica Lloréns‐Rico, Sabine Pereyre, Cécile Bébéar, Luís Serrano
Software Mentions: 1
Published: about 11 years ago

10.1038/s41598-020-80937-3

The impact of smoking different tobacco types on the subgingival microbiome and periodontal health: a pilot study
Cited by: 12
Author(s): Sausan Al Kawas, Farah Al-Marzooq, Betul Rahman, Jenni A. Shearston, Hiba Saad, Dalenda Benzina, Michael Weitzman
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.23406

Menopause and adipose tissue: miR-19a-3p is sensitive to hormonal replacement
Cited by: 22
Author(s): Reeta Kangas, Cristina Morsiani, G Pizza, Catia Lanzarini, Pauliina Aukee, Jaakko Kaprio, Sarianna Sipilä, Claudio Franceschi, Vuokko Kovanen, Eija K. Laakkonen, Miriam Capri
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-021-81540-w

Photoperiodic regulation of dopamine signaling regulates seasonal changes in retinal photosensitivity in mice
Cited by: 7
Author(s): Kousuke Okimura, Yusuke Nakane, Taeko Nishiwaki‐Ohkawa, Takashi Yoshimura
Software Mentions: 1
Published: over 5 years ago

10.1002/biot.201500550

Quantitative definition and monitoring of the host cell protein proteome using iTRAQ - a study of an industrial mAb producing CHO-S cell line
Cited by: 25
Author(s): Lesley M. Chiverton, Caroline Evans, Jagroop Pandhal, Andrew Landels, Byron Rees, Peter R. Levison, Phillip C. Wright, C. Mark Smales
Software Mentions: 1
Published: about 10 years ago

10.3389/fmicb.2018.02639

Transcriptome and Proteome of Fish-Pathogenic Streptococcus agalactiae Are Modulated by Temperature
Cited by: 21
Author(s): Guilherme Campos Tavares, Alex F. Carvalho, Felipe Luiz Pereira, Cristiana Perdigão Rezende, Vasco Azevedo, Carlos Augusto Gomes Leal, Henrique César Pereira Figueiredo
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0182868

Contaminants of emerging concern in tributaries to the Laurentian Great Lakes: I. Patterns of occurrence
Cited by: 79
Author(s): Sarah Elliott, Mark E. Brigham, Kathy E. Lee, Jo A. Banda, Steven J. Choy, Daniel J. Gefell, Thomas Minarik, Joseph Moore, Zachary G. Jorgenson
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13068-019-1516-6

Amelioration of biomass and lipid in marine alga by an endophytic fungus Piriformospora indica
Cited by: 18
Author(s): Vipul Swarup Bhatnagar, Prasun Bandyopadhyay, Girish H. Rajacharya, Sudipta Sarkar, Krishna Mohan Poluri, Shashi Kumar
Software Mentions: 1
Published: about 7 years ago

10.1007/s00125-021-05491-7

Polygenic risk scores predict diabetes complications and their response to intensive blood pressure and glucose control
Cited by: 18
Author(s): Johanne Tremblay, Mounsif Haloui, Redha Attaoua, Ramzan Tahir, Camil Hishmih, François Harvey, François-Christophe Marois-Blanchet, Carole Long, Paul Simon, Lara Santucci, Candan Hızel, John Chalmers, Michel Marre, Stephen Harrap, Renata Cífková, Alena Krajčoviechová, David R. Matthews, Bryan Williams, Neil Poulter, Sophia Zoungas, Stephen Colagiuri, Giuseppe Mancia, Diederick E. Grobbee, Anthony Rodgers, Liusheng Liu, Mawussé Agbessi, Vanessa Bruat, Marie-Julie Favé, Michelle P Harwood, Philip Awadalla, Mark Woodward, Julie Hussin, Pavel Hamet
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2018.01244

Comparative Genomics of Lactobacillus acidipiscis ACA-DC 1533 Isolated From Traditional Greek Kopanisti Cheese Against Species Within the Lactobacillus salivarius Clade
Cited by: 17
Author(s): Μαρία Κάζου, Voula Alexandraki, Jochen Blom, Bruno Pot, Effie Tsakalidou, Konstantinos Papadimitriou
Software Mentions: 1
Published: about 8 years ago

10.18632/oncotarget.12909

Hedgehog pathway dysregulation contributes to the pathogenesis of human gastrointestinal stromal tumors via GLI-mediated activation of KIT expression
Cited by: 26
Author(s): Chih Min Tang, Tracy E. Lee, Sabriya A. Syed, Adam M. Burgoyne, Samantha Leonard, Fei Gao, Jonathan C.H. Chan, Eileen Shi, Juliann Chmielecki, Deborah Morosini, Kai Wang, Jeffrey S. Ross, Michael L. Kendrick, Michael R. Bardsley, Martina De Siena, Junhao Mao, Olivier Harismendy, Tamás Ördög, Jason K. Sicklick
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41419-020-03252-9

A cross-talk between epithelium and endothelium mediates human alveolar–capillary injury during SARS-CoV-2 infection
Cited by: 73
Author(s): Peng Wang, Rong-Hua Luo, Min Zhang, Yaqing Wang, Tian-Zhang Song, Tingting Tao, Zhongyu Li, Lin Jin, Hong-Yi Zheng, Wenwen Chen, Mengqian Zhao, Yong‐Tang Zheng, Jianhua Qin
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0028175

Differentiation of Mesenchymal Stem Cells Derived from Pancreatic Islets and Bone Marrow into Islet-Like Cell Phenotype
Cited by: 57
Author(s): Cristina Zanini, Stefania Bruno, Giorgia Mandili, Denisa Baci, Francesco Cerutti, Giovanna Cenacchi, L Izzi, Giovanni Camussi, Marco Forni
Software Mentions: 1
Published: over 14 years ago

10.1016/j.dib.2020.105636

Data on miRNome changes in human cells exposed to nano- or ionic- forms of Cadmium
Cited by: 3
Author(s): Laura Paesano, Marta Marmiroli, Massimiliano G. Bianchi, Jason C. White, Ovidio Bussolati, A. Zappettini, Marco Villani, Nelson Marmiroli
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-33691-6

Investigating the potential use of an Antarctic variant of Janthinobacterium lividum for tackling antimicrobial resistance in a One Health approach
Cited by: 19
Author(s): Andreea Baricz, Adela Teban, Cecilia Chiriac, Edina Szekeres, Anca Farkas, Maria Nica, Amalia Dascălu, C Oprişan, Paris Lavín, Cristian Coman
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13068-019-1556-y

Myceliophthora thermophila Xyr1 is predominantly involved in xylan degradation and xylose catabolism
Cited by: 10
Author(s): Ana Carolina dos Santos Gomes, Daniel Luciano Falkoski, Evy Battaglia, Mao Peng, Maíra Nicolau de Almeida, Nancy Linares, Jean-Paul Meijnen, Jaap Visser, Ronald P. de Vries
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-32969-z

Integrated evidence reveals a new species in the ancient blue coral genus Heliopora (Octocorallia)
Cited by: 27
Author(s): Zoe T. Richards, Nina Yasuda, Taisei Kikuchi, Taryn Foster, Chika Mitsuyuki, Michael Stat, Yoshihisa Suyama, Nerida G. Wilson
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.dib.2018.11.090

Transcriptomic data for analyzing global gene expression patterns in Methicillin-resistance Staphylococcus aureus in response to spermine and oxacillin stress
Cited by: 2
Author(s): Shrikant Pawar, Xiangyu Yao, Chao Lu
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-34862-1

Arabidopsis molybdenum cofactor sulfurase ABA3 contributes to anthocyanin accumulation and oxidative stress tolerance in ABA-dependent and independent ways
Cited by: 35
Author(s): S. Watanabe, Muneo Sato, Yuji Sawada, Maho Tanaka, Atsushi Matsui, Yuka Kanno, Masami Yokota Hirai, Motoaki Seki, Atsushi Sakamoto, Mitsunori Seo
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0099509

Genomics of Post-Prandial Lipidomic Phenotypes in the Genetics of Lipid Lowering Drugs and Diet Network (GOLDN) Study
Cited by: 21
Author(s): Marguerite R. Irvin, Degui Zhi, Stella Aslibekyan, Steven A. Claas, Devin Absher, José M. Ordovás, Hemant K. Tiwari, Simon Watkins, Donna K. Arnett
Software Mentions: 1
Published: over 12 years ago

10.1016/j.dib.2017.06.032

Fatty acid and lipidomic data in normal and tumor colon tissues of rats fed diets with and without fish oil
Cited by: 2
Author(s): Zora Djurić, Muhammad N. Aslam, B Simon, Ananda Sen, Yan Jiang, Jianwei Ren, Rena Chan, Tanu Soni, Thekkelnaycke M. Rajendiran, William L. Smith, Dean E. Brenner
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-018-36414-z

The bile salt glycocholate induces global changes in gene and protein expression and activates virulence in enterotoxigenic Escherichia coli
Cited by: 15
Author(s): Enrique Joffré, Matilda Nicklasson, Sandra Álvarez-Carretero, Xue Xiao, Lei Sun, Intawat Nookaew, Baoli Zhu, Åsa Sjöling
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20040997

Transcriptomic Analysis for Indica and Japonica Rice Varieties under Aluminum Toxicity
Cited by: 10
Author(s): Peng Zhang, Zhuoran Ding, Zhengzheng Zhong, Hanhua Tong
Software Mentions: 1
Published: over 7 years ago

10.3390/biom10091353

MiRNA Profiles of Extracellular Vesicles Secreted by Mesenchymal Stromal Cells—Can They Predict Potential Off-Target Effects?
Cited by: 13
Author(s): Timo Z. Nazari-Shafti, Sebastian Neuber, Ana G. Duran, Vasileios Exarchos, Christien Madlen Beez, Heike Meýborg, Katrin Krüger, Petra Wolint, Johanna Buschmann, R Böni, Martina Seifert, Volkmar Falk, Maximilian Y. Emmert
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-37491-w

DRUGPATH – a novel bioinformatic approach identifies DNA-damage pathway as a regulator of size maintenance in human ESCs and iPSCs
Cited by: 5
Author(s): Boris Kovacic, Margit Rosner, Karin Schlangen, Nina Kramer, Markus Hengstschläger
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-38980-2

Epigenome-wide association study in peripheral white blood cells involving insulin resistance
Cited by: 36
Author(s): Ana Arpón, Fermı́n I. Milagro, Omar Ramos-López, María Luisa Mansego, José Luís Santos, José Ignacio Riezu-Boj, J. Alfredo Martínéz
Software Mentions: 1
Published: over 7 years ago

10.1038/s41421-018-0056-8

Four putative SWI2/SNF2 chromatin remodelers have dual roles in regulating DNA methylation in Arabidopsis
Cited by: 18
Author(s): Donglei Yang, Guiping Zhang, Lili Wang, Jingwen Li, Dachao Xu, Cuiru Di, Kai Tang, Lan Yang, Liang Zeng, Daisuke Miki, Cheng‐Guo Duan, Huiming Zhang, Jian‐Kang Zhu
Software Mentions: 1
Published: almost 8 years ago

10.1155/2013/878956

Characteristics of Clinical Shiga Toxin-ProducingEscherichia coliIsolated from British Columbia
Cited by: 8
Author(s): Kevin Allen, Chad R. Laing, Ana Cancarevic, Yongxiang Zhang, Lili Rosana Mesak, Hai Xu, Ana Paccagnella, Victor P. J. Gannon, Linda Hoang
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0234605

Understanding marine larval dispersal in a broadcast-spawning invertebrate: A dispersal modelling approach for optimising spat collection of the Fijian black-lip pearl oyster Pinctada margaritifera
Cited by: 6
Author(s): Monal M. Lal, Cyprien Bosserelle, Pranesh Kishore, Paul C. Southgate
Software Mentions: 1
Published: about 6 years ago

10.1098/rsob.130097

Ubiquitination site preferences in anaphase promoting complex/cyclosome (APC/C) substrates
Cited by: 38
Author(s): Mingwei Min, Ugo Mayor, Catherine Lindon
Software Mentions: 1
Published: about 13 years ago

10.18632/oncotarget.14894

Inhibition of CDK8 mediator kinase suppresses estrogen dependent transcription and the growth of estrogen receptor positive breast cancer
Cited by: 91
Author(s): Martina S.J. McDermott, Alexander A. Chumanevich, Chang-Uk Lim, Jiaxin Liang, Mengqian Chen, Serena Altilia, David J. Oliver, James M. Rae, Michael Shtutman, Hippokratis Kiaris, Balázs Győrffy, Igor B. Roninson, Eugenia V. Broude
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-10-296

Genomic diversity of pathogenic Escherichia coli of the EHEC 2 clonal complex
Cited by: 24
Author(s): Galeb Abu-Ali, David W. Lacher, Lukas M. Wick, Weihong Qi, Thomas S. Whittam
Software Mentions: 1
Published: over 17 years ago

10.1155/2020/5849323

Proteomic Analysis of Human Esophageal Cancer Using Tandem Mass Tag Quantifications
Cited by: 6
Author(s): Suofeng Sun, Huijuan Zhang, Yu Wang, Jing Gao, Shen Zhou, Yuan Li, Sun‐Young Han, Xiuling Li, Jian Li
Software Mentions: 1
Published: about 6 years ago

10.1186/s12967-016-0855-3

Testing chemotherapy efficacy in HER2 negative breast cancer using patient-derived spheroids
Cited by: 37
Author(s): Kathrin Halfter, Oliver Hoffmann, Nina Ditsch, Mareike Ahne, Frank Arnold, Stefan Paepke, Dieter Grab, Ingo Bauerfeind, Barbara Mayer
Software Mentions: 1
Published: over 10 years ago

10.1186/s12014-020-09279-6

Effects of cryopreservation and long-term culture on biological characteristics and proteomic profiles of human umbilical cord-derived mesenchymal stem cells
Cited by: 19
Author(s): Xufeng Fu, Bo Xu, Jiang Jiang, Xing Du, Xiaoli Yu, Yaping Yan, Shanshan Li, Briauna Marie Inglis, Huiming Ma, Hongyan Wang, Xiuying Pei, Wei Si
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0240947

A comprehensive examination of the lysine acetylation targets in paper mulberry based on proteomics analyses
Cited by: 4
Author(s): Ping Li, Chao Chen, Yibo Dong
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.01458

The Microbiome of Posidonia oceanica Seagrass Leaves Can Be Dominated by Planctomycetes
Cited by: 37
Author(s): Timo Kohn, Patrick Rast, Nicolai Kallscheuer, Sandra Wiegand, Christian Boedeker, Mike S. M. Jetten, Olga Jeske, John Vollmers, Anne‐Kristin Kaster, Manfred Rohde, Mareike Jogler, Christian Jogler
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0071364

Metabolic Response of Candida albicans to Phenylethyl Alcohol under Hyphae-Inducing Conditions
Cited by: 21
Author(s): Ting-Li Han, Sergey Tumanov, Richard D. Cannon, Silas G. Villas‐Bôas
Software Mentions: 1
Published: about 13 years ago

10.1038/s41598-019-47282-6

Metabolomics reveals a link between homocysteine and lipid metabolism and leukocyte telomere length: the ENGAGE consortium
Cited by: 12
Author(s): Ashley van der Spek, Linda Broer, Harmen H.M. Draisma, René Pool, Eva Albrecht, Marian Beekman, Massimo Mangino, Mait Raag, Dale R. Nyholt, Harish Dharuri, Veryan Codd, Najaf Amin, Eco J. C. de Geus, Joris Deelen, Ayşe Demirkan, İdil Yet, Krista Fischer, Toomas Haller, Anjali K. Henders, Aaron Isaacs, Sarah E. Medland, Grant W. Montgomery, Simon P. Mooijaart, Konstantin Strauch, H. Eka D. Suchiman, Anika A. M. Vaarhorst, Diana van Heemst, Rui Wang-Sattler, John B. Whitfield, Gonneke Willemsen, Margaret J. Wright, Nicholas G. Martin, Nilesh J. Samani, Andres Metspalu, P. Eline Slagboom, Tim D. Spector, Dorret I. Boomsma, Cornelia M. van Duijn, Christian Gieger
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2017.00615

Gene Expression Profiling of Transcription Factors of Helicobacter pylori under Different Environmental Conditions
Cited by: 30
Author(s): Miguel A. De la Cruz, Miguel A. Ares, Kristine von Bargen, Leonardo G. Panunzi, Jessica Martínez-Cruz, Hilda‐Alicia Valdez‐Salazar, César Jiménez-Galicia, Javier Torres
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2017.02300

Bacterial Community Dynamics in Dichloromethane-Contaminated Groundwater Undergoing Natural Attenuation
Cited by: 22
Author(s): Justin Wright, Veronica Kirchner, W. Bernard, Nikea Ulrich, Christopher J. McLimans, Maria Fernanda Campa, Terry C. Hazen, Tamzen W. Macbeth, David Marabello, Jacob McDermott, Rachel Mackelprang, Kimberly A. Roth, Regina Lamendella
Software Mentions: 1
Published: almost 9 years ago

10.18632/oncotarget.16320

Targeting the PIM protein kinases for the treatment of a T-cell acute lymphoblastic leukemia subset
Cited by: 32
Author(s): Megha Padi, Libia A. Luevano, Ningfei An, Ritu Pandey, Neha Singh, Jin H. Song, Jon C. Aster, Xue-Zhong Yu, Shikhar Mehrotra, Andrew S. Kraft
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms20071691

Dynamic TMT-Based Quantitative Proteomics Analysis of Critical Initiation Process of Totipotency during Cotton Somatic Embryogenesis Transdifferentiation
Cited by: 12
Author(s): Haixia Guo, Huihui Guo, Li Zhang, Yijie Fan, Yuhang Fan, Zhengmin Tang, Fanchang Zeng
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-48822-w

Cigarette smoke preparations, not moist snuff, impair expression of genes involved in immune signaling and cytolytic functions
Cited by: 7
Author(s): Gang Liu, Subhashini Arimilli, Evan Savage, G.L. Prasad
Software Mentions: 1
Published: almost 7 years ago

10.3390/cells9020513

Helicobacter Pylori Targets the EPHA2 Receptor Tyrosine Kinase in Gastric Cells Modulating Key Cellular Functions
Cited by: 18
Author(s): Marina Concli Leite, Miguel Sardinha Marques, Joana Melo, M. Pinto, Bruno Cavadas, Miguel Aroso, María Gómez-Lázaro, Raquel Seruca, Céu Figueiredo
Software Mentions: 1
Published: over 6 years ago

10.1111/jvh.12310

Elevated interferon-stimulated gene transcription in peripheral blood mononuclear cells occurs in patients infected with genotype 1 but not genotype 3 hepatitis C virus
Cited by: 6
Author(s): Mark W. Robinson, Rachael Swann, Alex Sigruener, Stephen T. Barclay, Peter R. Mills, John McLauchlan, Arvind H. Patel
Software Mentions: 1
Published: almost 12 years ago

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