cran: gplots | Projects | Ecosyste.ms: Papers

10.1155/2017/5932706

Isolation and Molecular Characterization of Amniotic Fluid-Derived Mesenchymal Stem Cells Obtained from Caesarean Sections
Cited by: 54
Author(s): Lucas‐Sebastian Spitzhorn, Shaifur Rahman, Laura Schwindt, Huyen-Tran Ho, Wasco Wruck, Martina Bohndorf, Silke Wehrmeyer, Audrey Ncube, Ines Beyer, Carsten Hagenbeck, Percy Balan, Tanja Fehm, James Adjaye
Software Mentions: 1
Published: over 9 years ago

10.1002/sctm.16-0427

Selective Expansion of Skeletal Muscle Stem Cells from Bulk Muscle Cells in Soft Three-Dimensional Fibrin Gel
Cited by: 7
Author(s): Pei‐Wen Zhu, Yalu Zhou, Furen Wu, Yuanfan Hong, Xin Wang, Gajendra S. Shekhawat, Jeffrey Mosenson, Wen Shu Wu
Software Mentions: 1
Published: over 9 years ago

10.1002/sctm.20-0199

Human induced pluripotent stem cell-derived lung organoids in an ex vivo model of the congenital diaphragmatic hernia fetal lung
Cited by: 21
Author(s): Shaun M. Kunisaki, Guihua Jiang, Juan Carlos Biancotti, Kenneth K. Y. Ho, Briana R. Dye, Allen Liu, Jason R. Spence
Software Mentions: 1
Published: almost 6 years ago

10.1111/jvh.12310

Elevated interferon-stimulated gene transcription in peripheral blood mononuclear cells occurs in patients infected with genotype 1 but not genotype 3 hepatitis C virus
Cited by: 6
Author(s): Mark W. Robinson, Rachael Swann, Alex Sigruener, Stephen T. Barclay, Peter R. Mills, John McLauchlan, Arvind H. Patel
Software Mentions: 1
Published: almost 12 years ago

10.7150/thno.41000

The Effect of Cardiogenic Factors on Cardiac Mesenchymal Cell Anti-Fibrogenic Paracrine Signaling and Therapeutic Performance
Cited by: 6
Author(s): Justin S. Heidel, Annalara G. Fischer, Xian Liang Tang, Ghazal Sadri, Wen Jian Wu, Claudiu R. Moisa, Heather Stowers, Neel Sandella, Marcin Wysoczynski, Shizuka Uchida, Joseph B. Moore
Software Mentions: 1
Published: over 6 years ago

10.3390/nu12113252

Bilberry Anthocyanins Ameliorate NAFLD by Improving Dyslipidemia and Gut Microbiome Dysbiosis
Cited by: 33
Author(s): Hironobu Nakano, Shusong Wu, Kozue Sakao, Taichi Hara, Jianhua He, Santos García, Kalidas Shetty, De‐Xing Hou
Software Mentions: 1
Published: almost 6 years ago

10.7150/thno.42347

Homozygous MESP1 knock-in reporter hESCs facilitated cardiovascular cell differentiation and myocardial infarction repair
Cited by: 11
Author(s): Lin Wang, Fengzhi Zhang, Fuyu Duan, Rujin Huang, Xi Chen, Ming Jia, Jie Na
Software Mentions: 1
Published: over 6 years ago

10.1111/1759-7714.13626

Multivariate gene expression‐based survival predictor model in esophageal adenocarcinoma
Cited by: 7
Author(s): Maoyuan Zhao, Jingsong Wang, Meng Yuan, Zeliang Ma, Yi Bao, Zhouguang Hui
Software Mentions: 1
Published: about 6 years ago

10.1128/mBio.01089-18

Parallel Evolution of Genome Streamlining and Cellular Bioenergetics across the Marine Radiation of a Bacterial Phylum
Cited by: 26
Author(s): Eric W. Getz, Saima Sultana Tithi, Liqing Zhang, Frank O. Aylward
Software Mentions: 1
Published: almost 8 years ago

10.1128/mBio.00161-20

Genetic and Chemical-Genetic Interactions Map Biogenesis and Permeability Determinants of the Outer Membrane of Escherichia coli
Cited by: 19
Author(s): Kristina Klobucar, Shawn French, Jean-Philippe Côté, James R. Howes, Eric D. Brown
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.02086-20

Na + -NQR Confers Aminoglycoside Resistance via the Regulation of <scp>l-</scp> Alanine Metabolism
Cited by: 31
Author(s): Ming Jiang, Su-fang Kuang, Shi‐shi Lai, Song Zhang, Jun Yang, Bo Peng, Xuan‐xian Peng, Zhuang‐Gui Chen, Hui Li
Software Mentions: 1
Published: over 5 years ago

10.1128/mSphere.00086-18

Food Starch Structure Impacts Gut Microbiome Composition
Cited by: 99
Author(s): Frederick J. Warren, Naoki Fukuma, Deirdre Mikkelsen, Bernadine M. Flanagan, Barbara A. Williams, Allan Lisle, Páraic Ó Cuív, Mark Morrison, Michael J. Gidley
Software Mentions: 1
Published: about 8 years ago

10.1128/mSphere.00152-18

Air-Liquid Interface Method To Study Epstein-Barr Virus Pathogenesis in Nasopharyngeal Epithelial Cells
Cited by: 18
Author(s): Elizabeth A. Caves, Sarah A. Cook, Nara Lee, Donna Stoltz, Simon C. Watkins, Kathy H.Y. Shair
Software Mentions: 1
Published: about 8 years ago

10.1186/s12864-016-2874-0

Transcriptomic changes in relation to early-life events in the gilthead sea bream (Sparus aurata)
Cited by: 13
Author(s): Elena Sarropoulou, A. Tsalafouta, Arvind Sundaram, Gregor D. Gilfillan, Georgios Kotoulas, Nikos Papandroulakis, M. Pavlidis
Software Mentions: 1
Published: about 10 years ago

10.18632/oncotarget.17564

Overexpression of a novel candidate oncogene KIF14 correlates with tumor progression and poor prognosis in prostate cancer
Cited by: 38
Author(s): Yixiang Zhang, Yeqing Yuan, Peidong Liang, Zhaoxia Zhang, Xiaojing Guo, Ligang Xia, Yingying Zhao, Xing-sheng Shu, Song Sun, Ying Ying, Yingduan Cheng
Software Mentions: 1
Published: over 9 years ago

10.1128/mSystems.00123-18

Multiplatform Physiologic and Metabolic Phenotyping Reveals Microbial Toxicity
Cited by: 4
Author(s): Jingwei Cai, Robert G. Nichols, Imhoi Koo, Zachary A. Kalikow, Limin Zhang, Yuan Tian, Jingtao Zhang, Philip B. Smith, Andrew D. Patterson
Software Mentions: 1
Published: almost 8 years ago

10.1128/mSystems.00329-18

Genome and Functional Characterization of Colonization Factor Antigen I- and CS6-Encoding Heat-Stable Enterotoxin-Only Enterotoxigenic Escherichia coli Reveals Lineage and Geographic Variation
Cited by: 25
Author(s): Tracy H. Hazen, Sushma Nagaraj, Sudipta Sen, Jasnehta Permala-Booth, Felipe Del Canto, Roberto Vidal, Eileen M. Barry, Jacob P. Bitoun, Wilbur H. Chen, Sharon M. Tennant, David A. Rasko
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.18664

miR-331-3p and Aurora Kinase inhibitor II co-treatment suppresses prostate cancer tumorigenesis and progression
Cited by: 19
Author(s): Michael R. Epis, Keith M. Giles, Dianne J. Beveridge, Kirsty Richardson, Patrick A. Candy, Lisa M. Stuart, Jacqueline M. Bentel, Ronald J. Cohen, Peter J. Leedman
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2164-15-962

Genome-wide patterns of copy number variation in the diversified chicken genomes using next-generation sequencing
Cited by: 67
Author(s): Guoqiang Yi, Lujiang Qu, J. Liu, Yong-Bin Yan, Guiyun Xu, Ning Yang
Software Mentions: 1
Published: almost 12 years ago

10.1093/hmg/ddaa146

Pre-natal manifestation of systemic developmental abnormalities in spinal muscular atrophy
Cited by: 20
Author(s): Anna A. L. Motyl, Kiterie M E Faller, Ewout J N Groen, Ronald A. Kline, Samantha L. Eaton, Leire M. Ledahawsky, Helena Chaytow, Douglas J. Lamont, Thomas M. Wishart, Yu-Ting Huang, Thomas H. Gillingwater
Software Mentions: 1
Published: about 6 years ago

10.1186/s12864-015-2231-8

Differential expression of small RNAs under chemical stress and fed-batch fermentation in E. coli
Cited by: 22
Author(s): Martin Holm Rau, Klara Bojanovič, Alex Toftgaard Nielsen, Katherine S. Long
Software Mentions: 1
Published: almost 11 years ago

10.1186/s13046-020-01773-x

Histone tail analysis reveals H3K36me2 and H4K16ac as epigenetic signatures of diffuse intrinsic pontine glioma
Cited by: 16
Author(s): Shejuan An, Jeannie M. Camarillo, Tai‐Chung Huang, Daphne Li, Juliette A. Morris, Madeline Zoltek, Jin Qi, Mandana Behbahani, Madhuri Kambhampati, Neil L. Kelleher, Javad Nazarian, Paul M. Thomas, Amanda Saratsis
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13046-021-01946-2

Integrin alpha-V is an important driver in pancreatic adenocarcinoma progression
Cited by: 10
Author(s): Marius Kemper, Alina Schiecke, Hanna Maar, С. В. Никулин, Andrey Poloznikov, Vladimir Galatenko, Michael Tachezy, Florian Gebauer, Tobias Lange, Kristoffer Riecken, Alexander G. Tonevitsky, Achim Aigner, Jakob R. Izbicki, Udo Schumacher, Daniel Wicklein
Software Mentions: 1
Published: about 5 years ago

10.1084/jem.20170771

B1a B cells require autophagy for metabolic homeostasis and self-renewal
Cited by: 90
Author(s): Adam J. Clarke, Thomas Riffelmacher, Daniel Braas, Richard J. Cornall, Anna Katharina Simon
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-019-6119-x

A high-resolution genomic composition-based method with the ability to distinguish similar bacterial organisms
Cited by: 4
Author(s): Yizhuang Zhou, Wenting Zhang, Huixian Wu, Kai Huang, Junfei Jin
Software Mentions: 1
Published: almost 7 years ago

10.1155/2020/8816824

Clinicopathological and Molecular Characteristics of Pleomorphic Invasive Lobular Carcinoma
Cited by: 3
Author(s): Jennifer Segar, Ritu Pandey, Kiah Farr, Raymond B. Nagle, Lauren LeBeau, Victor Gonzalez, Pavani Chalasani
Software Mentions: 1
Published: almost 6 years ago

10.3390/jof7090764

Variations in the Community Structure of Fungal Microbiota Associated with Apple Fruit Shaped by Fruit Bagging-Based Practice
Cited by: 1
Author(s): Punda Khwantongyim, Somying Wansee, Xi Lu, Wei Zhang, Guangyu Sun
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12864-021-07429-0

Borrelia burgdorferi infection modifies protein content in saliva of Ixodes scapularis nymphs
Cited by: 9
Author(s): Tae Kwon Kim, Lucas Tirloni, Emily Bencosme-Cuevas, Jolene K. Diedrich, John R. Yates, Albert Mulenga
Software Mentions: 1
Published: over 5 years ago

10.1155/2016/8740901

Genome-Wide Characterization and Expression Profiles of the Superoxide Dismutase Gene Family inGossypium
Cited by: 14
Author(s): Jingbo Zhang, Bo Li, Yang Yang, Weiping Hu, Fangyuan Chen, Lixia Xie, Liancheng Fan
Software Mentions: 1
Published: over 10 years ago

10.1128/JVI.00066-20

Characterization and Genomic Analysis of ValSw3-3, a New Siphoviridae Bacteriophage Infecting Vibrio alginolyticus
Cited by: 24
Author(s): Ling Chen, Quan Liu, Fan Jia, Tingwei Yan, Haoran Zhang, Jian Yang, Deng Deng, Chaolan Liu, Ting Wei, Yingfei Ma
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-14-28

An R2R3 MYB transcription factor determines red petal colour in an Actinidia (kiwifruit) hybrid population
Cited by: 72
Author(s): Lena G. Fraser, Alan Seal, Mirco Montefiori, Tony K. McGhie, G.K. Tsang, Paul M. Datson, Elena Hilario, Herbert W. Marsh, J K Dunn, Roger P. Hellens, Kevin Davies, M.A. McNeilage, H Nihal De Silva, Andrew C. Allan
Software Mentions: 1
Published: over 13 years ago

10.1155/2015/874361

Genome-Wide Comparative Analysis of Flowering-Related Genes in Arabidopsis, Wheat, and Barley.
Cited by: 27
Author(s): Fred Y. Peng, Zhiqiu Hu, Rong‐Cai Yang
Software Mentions: 1
Published: over 11 years ago

10.18632/oncotarget.10479

Synthetic lethal genetic interactions between Rad54 and PARP-1 in mouse development and oncogenesis
Cited by: 2
Author(s): Mirella Tanori, Arianna Casciati, Francesco Berardinelli, Simona Leonardi, Emanuela Pasquali, Francesca Antonelli, Barbara Tanno, Paola Giardullo, Alessandro Pannicelli, Gabriele Babini, Ilaria De Stefano, Antonella Sgura, Mariateresa Mancuso, Anna Saran, Simonetta Pazzaglia
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2164-15-318

Pseudomonas aeruginosa clinical and environmental isolates constitute a single population with high phenotypic diversity
Cited by: 77
Author(s): María-Victoria Grosso-Becerra, Christian Santos‐Medellín, Abigail González‐Valdez, José-Luis Méndez, Gabriela Delgado, Rosario Morales-Espinosa, Luis Servı́n‐González, Luis David Alcaraz, Gloria Soberón‐Chávez
Software Mentions: 1
Published: over 12 years ago

10.1038/oncsis.2015.29

MiR expression profiles of paired primary colorectal cancer and metastases by next-generation sequencing
Cited by: 57
Author(s): Maarten Neerincx, Daoud Sie, Mark A. van de Wiel, Nicole C.T. van Grieken, J. D. Burggraaf, Henk Dekker, Paul P. Eijk, Bauke Ylstra, Cornelis Verhoef, Gerrit A. Meijer, Tineke E. Buffart, Henk M.W. Verheul
Software Mentions: 1
Published: almost 11 years ago

10.1002/jia2.25655

Subtype‐specific differences in transmission cluster dynamics of HIV‐1 B and CRF01_AE in New South Wales, Australia
Cited by: 4
Author(s): Francesca Di Giallonardo, Angie N Pinto, Phillip Keen, Ansari Shaik, Alex Carrera, Hanan Salem, Christine Selvey, Steven J. Nigro, Neil Fraser, Karen Price, Jo Holden, Frederick J. Lee, Dominic E. Dwyer, Benjamin R. Bavinton, Jemma L. Geoghegan, Andrew E. Grulich, Anthony D. Kelleher, Nsw Hiv Prevention Partnership
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-10-S1-S4

Genome-wide prediction of cis-acting RNA elements regulating tissue-specific pre-mRNA alternative splicing
Cited by: 29
Author(s): Xin Wang, Kejun Wang, Milan Radovich, Yue Wang, Guohua Wang, Weixing Feng, Jeremy R. Sanford, Yunlong Liu
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pone.0171856

The influence of sexual activity on the vaginal microbiota and Gardnerella vaginalis clade diversity in young women
Cited by: 70
Author(s): Lenka A Vodstrcil, Jimmy Twin, Suzanne M. Garland, Christopher K. Fairley, Jane S Hocking, Matthew Law, Erica L Plummer, Katherine Fethers, Eric P F Chow, Sepehr N. Tabrizi, Catriona Bradshaw
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0198943

Evaluation of phenotypic and functional stability of RAW 264.7 cell line through serial passages
Cited by: 177
Author(s): Bartłomiej Taciak, Maciej Białasek, Agata Braniewska, Zuzanna Sas, Paulina Sawicka, Łukasz Kiraga, Tomasz P. Rygiel, Magdalena Król
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0189032

Route of infection alters virulence of neonatal septicemia Escherichia coli clinical isolates
Cited by: 12
Author(s): Bryan K. Cole, Edgar J. Scott, Marko Ilikj, David Bard, Darrin R. Akins, David W. Dyer, Susana Chávez-Bueno
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0037933

Prenatal Famine and Genetic Variation Are Independently and Additively Associated with DNA Methylation at Regulatory Loci within IGF2/H19
Cited by: 131
Author(s): Elmar W. Tobi, P. Eline Slagboom, Jenny van Dongen, Dennis Kremer, Aryeh D. Stein, Hein Putter, Bastiaan T. Heijmans, L. H. Lumey
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0063059

Analysis of Nitrification Efficiency and Microbial Community in a Membrane Bioreactor Fed with Low COD/N-Ratio Wastewater
Cited by: 21
Author(s): Jinxing Ma, Zhiwei Wang, Chaowei Zhu, Shumeng Liu, Qiaoying Wang, Zhichao Wu
Software Mentions: 1
Published: over 13 years ago

10.1186/s12864-018-5320-7

Analysis of the distribution of assimilation products and the characteristics of transcriptomes in rice by submergence during the ripening stage
Cited by: 5
Author(s): Hyeon Seok Lee, Woon Ha Hwang, Jae Hyeok Jeong, Seung Hyeon Ahn, Jeong Seon Baek, Han Yong Jeong, Hong Kyu Park, Bon Il Ku, Jong Tak Yun, Geon Hwi Lee, Kyung San Choi
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0160924

Kinase Gene Expression Profiling of Metastatic Clear Cell Renal Cell Carcinoma Tissue Identifies Potential New Therapeutic Targets
Cited by: 17
Author(s): Pooja Ghatalia, Eddy S. Yang, Brittany N. Lasseigne, Ryne C. Ramaker, Sara J. Cooper, Dongquan Chen, Sunil Sudarshan, Wei Shi, Arjun S. Guru, Amy Zhao, Tiffiny S. Cooper, Deborah L. Della Manna, Gurudatta Naik, R Myers, Guru Sonpavde
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0206400

A multi-gene expression profile panel for predicting liver metastasis: An algorithmic approach
Cited by: 4
Author(s): Kanisha Shah, Shanaya Patel, Sheefa Mirza, Rakesh Rawal
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0224211

Skewed T cell responses to Epstein-Barr virus in long-term asymptomatic kidney transplant recipients
Cited by: 4
Author(s): Cecilia Nakid-Cordero, Nadia Arzouk, Nicolas Gauthier, Nadine Tarantino, Martin Larsen, Sylvain Choquet, Sonia Burrel, Brigitte Autran, Vincent Vieillard, Amélie Guihot
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0137354

Comparative “-omics” in Mycoplasma pneumoniae Clinical Isolates Reveals Key Virulence Factors
Cited by: 44
Author(s): María Lluch‐Senar, Luca Cozzuto, Jaime Cano, Javier Delgado, Verónica Lloréns‐Rico, Sabine Pereyre, Cécile Bébéar, Luís Serrano
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0182868

Contaminants of emerging concern in tributaries to the Laurentian Great Lakes: I. Patterns of occurrence
Cited by: 79
Author(s): Sarah Elliott, Mark E. Brigham, Kathy E. Lee, Jo A. Banda, Steven J. Choy, Daniel J. Gefell, Thomas Minarik, Joseph Moore, Zachary G. Jorgenson
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0028175

Differentiation of Mesenchymal Stem Cells Derived from Pancreatic Islets and Bone Marrow into Islet-Like Cell Phenotype
Cited by: 57
Author(s): Cristina Zanini, Stefania Bruno, Giorgia Mandili, Denisa Baci, Francesco Cerutti, Giovanna Cenacchi, L Izzi, Giovanni Camussi, Marco Forni
Software Mentions: 1
Published: over 14 years ago

10.1186/s12864-015-2153-5

Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential
Cited by: 514
Author(s): Chandan Pal, Johan Bengtsson‐Palme, Erik Kristiansson, D. G. Joakim Larsson
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12864-015-1298-6

RNA Seq analysis of the Eimeria tenella gametocyte transcriptome reveals clues about the molecular basis for sexual reproduction and oocyst biogenesis
Cited by: 77
Author(s): Robert B. Walker, Philippa A Sharman, Catherine M. Miller, Christoph Lippuner, Michał Okoniewski, Ramon M. Eichenberger, Chandra Ramakrishnan, Fabien Brossier, Peter Deplazes, Adrian B. Hehl, Nicholas C. Smith
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0052481

Primed Pluripotent Cell Lines Derived from Various Embryonic Origins and Somatic Cells in Pig
Cited by: 60
Author(s): Jin Kyu Park, Hye Sun Kim, Kyungjun Uh, Kwang‐Hwan Choi, Hyeong Min Kim, Taeheon Lee, Byung Chul Yang, Hyun Jong Kim, Hak Hyun Ka, Heebal Kim, Chang Kyu Lee
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0116915

SHBG Gene Polymorphism (rs1799941) Associates with Metabolic Syndrome in Children and Adolescents
Cited by: 7
Author(s): Marquitta J. White, Fatih Eren, Deniz Ağırbaşlı, Scott M. Williams, Mehmet Ağırbaşlı
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0102949

Differences in Gene Expression between Mouse and Human for Dynamically Regulated Genes in Early Embryo
Cited by: 25
Author(s): Elo Madissoon, Virpi Töhönen, Liselotte Vesterlund, Shintaro Katayama, Per Unneberg, José Inzunza, Outi Hovatta, Juha Kere
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0099509

Genomics of Post-Prandial Lipidomic Phenotypes in the Genetics of Lipid Lowering Drugs and Diet Network (GOLDN) Study
Cited by: 21
Author(s): Marguerite R. Irvin, Degui Zhi, Stella Aslibekyan, Steven A. Claas, Devin Absher, José M. Ordovás, Hemant K. Tiwari, Simon Watkins, Donna K. Arnett
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0226425

Genome-wide comparisons of gene expression in adult versus elderly burn patients
Cited by: 5
Author(s): Stephanie Dreckmann, Saeid Amini-Nik, Ronald G. Tompkins, Miliana Vojvodic, Marc G. Jeschke
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0110076

Characterization of Egg Laying Hen and Broiler Fecal Microbiota in Poultry Farms in Croatia, Czech Republic, Hungary and Slovenia
Cited by: 63
Author(s): Petra Vídeňská, Masudur Rahman, Marcela Faldynová, Vladimír Babák, Marta Matulová, Estella Prukner‐Radovčić, Ivan Križek, Sonja Smole-Možina, Jasna Kovač, Ama Szmolka, Béla Nagy, Karel Sedlář, Darina Čejková, Ivan Rychlı́k
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0111267

Differential Expressions of the Alternatively Spliced Variant mRNAs of the µ Opioid Receptor Gene, OPRM1, in Brain Regions of Four Inbred Mouse Strains
Cited by: 32
Author(s): Jin Xu, Zhigang Lu, Mingming Xu, Grace C. Rossi, Benjamin Kest, Amanda R. Waxman, Gavril W. Pasternak, Ying–Xian Pan
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0227575

The interoceptive hippocampus: Mouse brain endocrine receptor expression highlights a dentate gyrus (DG)–cornu ammonis (CA) challenge–sufficiency axis
Cited by: 12
Author(s): Richard Lathe, Sheena Singadia, Crispin Y. Jordan, Gernot Riedel
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers13143432

Characterization of Novel Progression Factors in Castration-Resistant Prostate Cancer Based on Global Comparative Proteome Analysis
Cited by: 4
Author(s): Ann-Yae Na, Sie−Young Choi, Eun‐Ju Yang, Kwang-Hyeon Liu, Sunghwan Kim, Hyun Jin Jung, Youngshik Choe, Yun‐Sok Ha, Tae Gyun Kwon, Jun Nyung Lee, Sangkyu Lee
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0234605

Understanding marine larval dispersal in a broadcast-spawning invertebrate: A dispersal modelling approach for optimising spat collection of the Fijian black-lip pearl oyster Pinctada margaritifera
Cited by: 6
Author(s): Monal M. Lal, Cyprien Bosserelle, Pranesh Kishore, Paul C. Southgate
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.43963

The ion channel ppk301 controls freshwater egg-laying in the mosquito Aedes aegypti
Cited by: 71
Author(s): Benjamin J. Matthews, Meg A Younger, Leslie B. Vosshall
Software Mentions: 1
Published: over 7 years ago

10.3390/cancers12102730

Transcriptomics-Based Drug Repurposing Approach Identifies Novel Drugs against Sorafenib-Resistant Hepatocellular Carcinoma
Cited by: 20
Author(s): Kelly Regan-Fendt, Ding Li, Ryan Reyes, Lianbo Yu, Nissar Ahmad Wani, Peng Hu, Samson T. Jacob, Kalpana Ghoshal, Philip R. O. Payne, Tasneem Motiwala
Software Mentions: 1
Published: almost 6 years ago

10.3390/cancers12030541

Molecular Profiling of Keratinocyte Skin Tumors Links Staphylococcus aureus Overabundance and Increased Human β-Defensin-2 Expression to Growth Promotion of Squamous Cell Carcinoma
Cited by: 31
Author(s): Nandhitha Madhusudhan, Manuela R. Păuşan, Bettina Halwachs, Marija Durdević, Markus Windisch, Jan Kehrmann, V. Patra, Peter Wolf, Petra Boukamp, Christine Moissl-Eichinger, Lorenzo Cerroni, Jürgen C. Becker, Gregor Gorkiewicz
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers13061290

Molecular Profiling of Docetaxel-Resistant Prostate Cancer Cells Identifies Multiple Mechanisms of Therapeutic Resistance
Cited by: 14
Author(s): Thiago Silva Lima, Diego Iglesias-Gato, Luciano D O Souza, Jan Stenvang, Diego Silva Lima, Martin Andreas Røder, Klaus Brasso, José M.A. Moreira
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-15-230

RNA-seq analysis identifies an intricate regulatory network controlling cluster root development in white lupin
Cited by: 41
Author(s): David Secco, Huixia Shou, James Whelan, Oliver Berkowitz
Software Mentions: 1
Published: over 12 years ago

10.1186/s12864-017-4425-8

Global identification, structural analysis and expression characterization of cytochrome P450 monooxygenase superfamily in rice
Cited by: 54
Author(s): Kaifa Wei, Huiqin Chen
Software Mentions: 1
Published: over 8 years ago

10.3390/cancers11101501

Salivary Gland Function, Antioxidant Defence and Oxidative Damage in the Saliva of Patients with Breast Cancer: Does the BRCA1 Mutation Disturb the Salivary Redox Profile?
Cited by: 32
Author(s): Beata Sawczuk, Mateusz Maciejczyk, Magdalena Sawczuk-Siemieniuk, Renata Posmyk, Halina Car
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0240947

A comprehensive examination of the lysine acetylation targets in paper mulberry based on proteomics analyses
Cited by: 4
Author(s): Ping Li, Chao Chen, Yibo Dong
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13092096

Immune Monitoring during Therapy Reveals Activitory and Regulatory Immune Responses in High-Risk Neuroblastoma
Cited by: 7
Author(s): Celina L. Szanto, Annelisa M. Cornel, Sara M. Tamminga, Eveline M. Delemarre, Coco de Koning, Denise A. M. H. van den Beemt, Ester Dünnebach, Michelle L. Tas, Miranda P. Dierselhuis, Godelieve A.M. Tytgat, Max M. van Noesel, Kathelijne C.J.M. Kraal, Jaap-Jan Boelens, Alwin D. R. Huitema, Stefan Nierkens
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13184531

Attenuated Chromosome Oscillation as a Cause of Chromosomal Instability in Cancer Cells
Cited by: 2
Author(s): Kenji Iemura, Yujiro Yoshizaki, Kinue Kuniyasu, Kozo Tanaka
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.cell.2018.01.004

NK Cells Stimulate Recruitment of cDC1 into the Tumor Microenvironment Promoting Cancer Immune Control
Cited by: 1,039
Author(s): Jan Böttcher, Eduardo Bonavita, Probir Chakravarty, Hanna Blees, Mar Cabeza-Cabrerizo, Stefano Sammicheli, Neil C. Rogers, Erik Sahai, Santiago Zelenay, Caetano Reis e Sousa
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0071364

Metabolic Response of Candida albicans to Phenylethyl Alcohol under Hyphae-Inducing Conditions
Cited by: 21
Author(s): Ting-Li Han, Sergey Tumanov, Richard D. Cannon, Silas G. Villas‐Bôas
Software Mentions: 1
Published: about 13 years ago

10.18632/oncotarget.22839

Polycomb protein RING1A limits hematopoietic differentiation in myelodysplastic syndromes
Cited by: 5
Author(s): Anna M. Palau, Anne-Kathrin Garz, Jeannine Diesch, Anabel Zwick, Roberto Malinverni, Vanesa Valero, Katrina M. Lappin, Raquel Casquero, Andreas Lennartsson, Johannes Zuber, Tomàs Navarro, Ken Mills, Katharina Götze, Marcus Buschbeck
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41419-019-1503-7

Direct reprogramming of epidermal cells toward sweat gland-like cells by defined factors
Cited by: 12
Author(s): Bin Yao, Jiangfan Xie, Nanbo Liu, Tian Hu, Wei Song, Sha Huang, Xiaobing Fu
Software Mentions: 1
Published: over 7 years ago

10.1038/s41419-021-04023-w

GRP78 determines glioblastoma sensitivity to UBA1 inhibition-induced UPR signaling and cell death
Cited by: 17
Author(s): Guanzheng Liu, Jiefeng Yu, Runqiu Wu, Lin Shi, Xu Zhang, Wanhong Zhang, Xiaorong Zhong, Yifeng Wang, Huan Li, Yang Shen, Changyong Wu, Rutong Yu, Mingshan Niu, Xuejiao Liu
Software Mentions: 1
Published: about 5 years ago

10.1038/cddis.2017.5

Nuclear Drosha enhances cell invasion via an EGFR-ERK1/2-MMP7 signaling pathway induced by dysregulated miRNA-622/197 and their targets LAMC2 and CD82 in gastric cancer
Cited by: 51
Author(s): Lixiang Xu, Yixuan Hou, Gang Tu, Yanlin Chen, Yan‐e Du, Hailong Zhang, Siyang Wen, Xi Tang, Jun Yin, Lang Lei, Kai Sun, Guanglun Yang, Xiaoli Tang, Manran Liu
Software Mentions: 1
Published: over 9 years ago

10.1038/s41419-021-03755-z

Loss of CEP70 function affects acrosome biogenesis and flagella formation during spermiogenesis
Cited by: 8
Author(s): Qiang Liu, Qingping Guo, Wei Guo, Shuangshuang Song, Nan Wang, Xi Chen, Andi Sun, Liying Yan, Jie Qiao
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-020-03252-9

A cross-talk between epithelium and endothelium mediates human alveolar–capillary injury during SARS-CoV-2 infection
Cited by: 73
Author(s): Peng Wang, Rong-Hua Luo, Min Zhang, Yaqing Wang, Tian-Zhang Song, Tingting Tao, Zhongyu Li, Lin Jin, Hong-Yi Zheng, Wenwen Chen, Mengqian Zhao, Yong‐Tang Zheng, Jianhua Qin
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-021-03439-8

Akt kinase LANCL2 functions as a key driver in EGFR-mutant lung adenocarcinoma tumorigenesis
Cited by: 12
Author(s): Yu‐Qing Lou, Jianlin Xu, Yanwei Zhang, Wei Zhang, Xueyan Zhang, Ping Gu, Hua Zhong, Huimin Wang, Jun Lü, Baohui Han
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-018-5423-1

Delineation of the pan-proteome of fish-pathogenic Streptococcus agalactiae strains using a label-free shotgun approach
Cited by: 8
Author(s): Guilherme Campos Tavares, Felipe Luiz Pereira, Gustavo Morais Barony, Cristiana Perdigão Rezende, Wanderson Marques da Silva, Gustavo H. M. F. Souza, Thiago Verano‐Braga, Vasco Azevedo, Carlos Augusto Gomes Leal, Henrique César Pereira Figueiredo
Software Mentions: 1
Published: over 7 years ago

10.1038/s41419-018-0605-y

MicroRNA-29b/142-5p contribute to the pathogenesis of biliary atresia by regulating the IFN-γ gene
Cited by: 22
Author(s): Yifan Yang, Jiang Zhu, Rui Dong, Chengchao Zheng, Yanlei Huang, Yijie Zheng, Zhen Shen, Gong Chen, Xiaoying Luo, Shan Zheng
Software Mentions: 1
Published: over 8 years ago

10.1038/s41421-018-0056-8

Four putative SWI2/SNF2 chromatin remodelers have dual roles in regulating DNA methylation in Arabidopsis
Cited by: 18
Author(s): Donglei Yang, Guiping Zhang, Lili Wang, Jingwen Li, Dachao Xu, Cuiru Di, Kai Tang, Lan Yang, Liang Zeng, Daisuke Miki, Cheng‐Guo Duan, Huiming Zhang, Jian‐Kang Zhu
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0138965

Metabolomic Profiling of 13 Diatom Cultures and Their Adaptation to Nitrate-Limited Growth Conditions
Cited by: 40
Author(s): Mariusz A. Bromke, Jamal S. M. Sabir, F. A. Al-Fassi, Nahid H. Hajarah, Saleh A. Kabli, Abdulrahman L. Al-Malki, Matt P. Ashworth, Michaël Méret, Robert K. Jansen, Lothar Willmitzer
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0168130

New Altered Non-Fibrillar Collagens in Human Dilated Cardiomyopathy: Role in the Remodeling Process
Cited by: 26
Author(s): Carolina Gil-Cayuela, Esther Roselló‐Lletí, Ana Ortega, Estefanía Tarazón, Juan Carlos Triviño, Luis Martínez‐Dolz, José Ramón González-Juanatey, Francisca Lago, Manuel Portolés, Miguel Rivera
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0137522

Integrated Analyses of Gene Expression Profiles Digs out Common Markers for Rheumatic Diseases
Cited by: 17
Author(s): Lan Wang, Long‐Fei Wu, Xin Lu, Xing‐Bo Mo, Zaixiang Tang, Shu‐Feng Lei, Fei‐Yan Deng
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12864-021-07993-5

Exploration of the lactation function of protein phosphorylation sites in goat mammary tissues by phosphoproteome analysis
Cited by: 2
Author(s): Chao Zhu, Junru Zhu, Qiangde Duan, Yue Jiang, Hao Yin, Yizhu He, Fu Li, Xiaopeng An
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0012103

Tumorigenic WAP-T Mouse Mammary Carcinoma Cells: A Model for a Self-Reproducing Homeostatic Cancer Cell System
Cited by: 22
Author(s): Florian Wegwitz, Mark-Andreas Kluth, Claudia Mänz, Benjamin Otto, Katharina Gruner, Christina Heinlein, Marion Kühl, Gabriele Warnecke, Udo Schumacher, Wolfgang Deppert, Genrich V. Tolstonog
Software Mentions: 1
Published: about 16 years ago

10.1186/1471-2164-10-544

Differentially expressed genes for aggressive pecking behaviour in laying hens
Cited by: 21
Author(s): Bart Buitenhuis, Jakob Hedegaard, Luc Janss, Peter Sørensen
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pntd.0007758

Time-resolved proteomic profile of Amblyomma americanum tick saliva during feeding
Cited by: 35
Author(s): Tae Kwon Kim, Lucas Tirloni, Antônio Frederico Michel Pinto, Jolene K. Diedrich, James J. Moresco, John R. Yates, Itabajara da Silva Vaz, Albert Mulenga
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pntd.0004323

Ixodes scapularis Tick Saliva Proteins Sequentially Secreted Every 24 h during Blood Feeding
Cited by: 103
Author(s): Tae Kwon Kim, Lucas Tirloni, Antônio Frederico Michel Pinto, James J. Moresco, John R. Yates, Itabajara da Silva Vaz, Albert Mulenga
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pntd.0007828

Comparative genomic analysis and molecular examination of the diversity of enterotoxigenic Escherichia coli isolates from Chile
Cited by: 14
Author(s): David A. Rasko, Felipe Del Canto, Qingwei Luo, James M. Fleckenstein, Roberto Vidal, Tracy H. Hazen
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pntd.0001514

Molecular Mechanisms of Drug Resistance in Natural Leishmania Populations Vary with Genetic Background
Cited by: 76
Author(s): Saskia Decuypere, Manu Vanaerschot, Kirstyn Brunker, Hideo Imamura, Sylke Müller, Basudha Khanal, Suman Rijal, Jean‐Claude Dujardin, Graham H. Coombs
Software Mentions: 1
Published: over 14 years ago

10.3390/cells9041003

Sofosbuvir Activates EGFR-Dependent Pathways in Hepatoma Cells with Implications for Liver-Related Pathological Processes
Cited by: 9
Author(s): Denisa Bojkova, Sandra Westhaus, Rui Costa, Lejla Timmer, Nora Funkenberg, Marek Korencak, Hendrik Streeck, Florian W. R. Vondran, Ruth Broering, Stefan Heinrichs, Karl S. Lang, Sandra Ciesek
Software Mentions: 1
Published: over 6 years ago

10.3390/cells10061495

Phenotypic Characterization by Single-Cell Mass Cytometry of Human Intrahepatic and Peripheral NK Cells in Patients with Hepatocellular Carcinoma
Cited by: 6
Author(s): Yuichi Yoshida, Sachiyo Yoshio, Taiji Yamazoe, Taizo Mori, Yuriko Tsustui, Hironari Kawai, Shiori Yoshikawa, Takasuke Fukuhara, Tomoyoshi Okamoto, Yoshihiro Ono, Yu Takahashi, Ryuki Hashida, Takumi Kawaguchi, Akinobu Taketomi, Tatsuya Kanto
Software Mentions: 1
Published: about 5 years ago

10.3390/cells9020513

Helicobacter Pylori Targets the EPHA2 Receptor Tyrosine Kinase in Gastric Cells Modulating Key Cellular Functions
Cited by: 18
Author(s): Marina Concli Leite, Miguel Sardinha Marques, Joana Melo, M. Pinto, Bruno Cavadas, Miguel Aroso, María Gómez-Lázaro, Raquel Seruca, Céu Figueiredo
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pntd.0004302

Phenotypic Features of Circulating Leukocytes from Non-human Primates Naturally Infected with Trypanosoma cruzi Resemble the Major Immunological Findings Observed in Human Chagas Disease
Cited by: 12
Author(s): Renato Sathler-Avelar, Danielle Marquete Vitelli-Avelar, Armanda Moreira Mattoso-Barbosa, Marcelo Perdigão-de-Oliveira, Ronaldo Peres Costa, Silvana Maria Elói-Santos, Matheus de Souza Gomes, Laurence Rodrigues do Amaral, Andréa Teixeira-Carvalho, Olindo Assis Martins‐Filho, Edward J. Dick, Gene B. Hubbard, Jane F. VandeBerg, John L. VandeBerg
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.23406

Menopause and adipose tissue: miR-19a-3p is sensitive to hormonal replacement
Cited by: 22
Author(s): Reeta Kangas, Cristina Morsiani, G Pizza, Catia Lanzarini, Pauliina Aukee, Jaakko Kaprio, Sarianna Sipilä, Claudio Franceschi, Vuokko Kovanen, Eija K. Laakkonen, Miriam Capri
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2156-16-S1-S1

Candidate genes in quantitative trait loci associated with absolute and relative kidney weight in rats with Inherited Stress Induced Arterial Hypertension
Cited by: 5
Author(s): Olga E. Redina, S. É. Smolenskaya, Л. О. Климов, A. L. Markel
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pntd.0005365

Plasmodium vivax gametocytes in the bone marrow of an acute malaria patient and changes in the erythroid miRNA profile
Cited by: 63
Author(s): Bàrbara Baró, Katrien Deroost, Tainá Raiol, Marcelo Augusto Mota Brito, Anne Cristine Gomes de Almeida, Armando de Menezes-Neto, Erick Frota Gomes Figueiredo, Aline Alencar, Rodrigo de Souza Leitão, Fernando Val, Wuelton Marcelo Monteiro, Anna Oliveira, Maria del Pilar Armengol, Carmen Fernández-Becerra, Marcus Vinícius Guimarães Lacerda, Hernando A. del Portillo
Software Mentions: 1
Published: over 9 years ago

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