cran: gplots | Projects | Ecosyste.ms: Papers

10.1155/2020/5849323

Proteomic Analysis of Human Esophageal Cancer Using Tandem Mass Tag Quantifications
Cited by: 6
Author(s): Suofeng Sun, Huijuan Zhang, Yu Wang, Jing Gao, Shen Zhou, Yuan Li, Sun‐Young Han, Xiuling Li, Jian Li
Software Mentions: 1
Published: about 6 years ago

10.1186/s13293-015-0044-8

Large-scale transcriptome sequencing reveals novel expression patterns for key sex-related genes in a sex-changing fish
Cited by: 74
Author(s): Hui Liu, Melissa S. Lamm, Kim Rutherford, Michael A. Black, John Godwin, Neil J. Gemmell
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12967-015-0605-y

Altered microRNAs expression profiling in cumulus cells from patients with polycystic ovary syndrome
Cited by: 48
Author(s): Suying Liu, Xuan Zhang, Changgen Shi, Jimin Lin, Guowu Chen, Bin Wu, Ligang Wu, Huijuan Shi, Yuan Yao, Weijin Zhou, Zilong Sun, Xi Dong, Jian Wang
Software Mentions: 1
Published: about 11 years ago

10.1242/bio.20148193

Autocrine Activation of the Wnt/β-Catenin Pathway by CUX1 and GLIS1 in Breast Cancers
Cited by: 34
Author(s): Charles Vadnais, Peiman Shooshtarizadeh, Charles V. Rajadurai, Robert Lesurf, Laura Hulea, Sayeh Davoudi, C. Linn Cadieux, Michael Hallett, Morag Park, Alain Nepveu
Software Mentions: 1
Published: about 12 years ago

10.3897/BDJ.9.e60980

Patterns of richness, diversity and abundance of an odonate assemblage from a tropical dry forest in the Santiago Dominguillo Region, Oaxaca, México (Insecta: Odonata)
Cited by: 0
Author(s): Enrique González-Soriano, Felipe A. Noguera, Cisteil X. Pérez-Hernández, Santiago Zaragoza‐Caballero, Leonardo González-Valencia
Software Mentions: 1
Published: over 5 years ago

10.1186/s12917-017-1157-6

OmpA protein sequence-based typing and virulence-associated gene profiles of Pasteurella multocida isolates associated with bovine haemorrhagic septicaemia and porcine pneumonic pasteurellosis in Thailand
Cited by: 5
Author(s): Teerasak E-kobon, Ratiporn Leeanan, Saengtian Pannoi, Pornchai Anuntasomboon, Pacharee Thongkamkoon, Arinthip Thamchaipenet
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms18040751

Exploring the Genetic Resistance to Gastrointestinal Nematodes Infection in Goat Using RNA-Sequencing
Cited by: 20
Author(s): Ali Akbar Bhuiyan, Jingjin Li, Zhenyang Wu, Peihong Ni, Adeyinka Abiola Adetula, Haiyan Wang, Cheng Zhang, Xiaohui Tang, Anjuman Ara Bhuyan, Zhao Song, Xiaoyong Du
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.23406

Menopause and adipose tissue: miR-19a-3p is sensitive to hormonal replacement
Cited by: 22
Author(s): Reeta Kangas, Cristina Morsiani, G Pizza, Catia Lanzarini, Pauliina Aukee, Jaakko Kaprio, Sarianna Sipilä, Claudio Franceschi, Vuokko Kovanen, Eija K. Laakkonen, Miriam Capri
Software Mentions: 1
Published: over 8 years ago

10.3389/fpls.2015.00661

RNA-Seq analysis identifies key genes associated with haustorial development in the root hemiparasite Santalum album
Cited by: 38
Author(s): Xinhua Zhang, Oliver Berkowitz, Jaime A. Teixeira da Silva, Muhan Zhang, Guohua Ma, James Whelan, Jun Duan
Software Mentions: 1
Published: about 11 years ago

10.1128/AEM.01993-19

Comparative Genomics of Rumen Butyrivibrio spp. Uncovers a Continuum of Polysaccharide-Degrading Capabilities
Cited by: 54
Author(s): Nikola Palevich, William J. Kelly, Sinead C. Leahy, Stuart E. Denman, Eric Altermann, Jasna Rakonjac, Graeme T. Attwood
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2017.00946

Genome-Wide Identification of AP2/ERF Transcription Factors in Cauliflower and Expression Profiling of the ERF Family under Salt and Drought Stresses
Cited by: 57
Author(s): Hui Li, Yu Wang, Mei Wu, Lihong Li, Cong Liu, Zhanpin Han, Jiye Yuan, Chengbin Chen, Wenqin Song, Chunguo Wang
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2020.563240

Different Age-Induced Changes in Rhizosphere Microbial Composition and Function of Panax ginseng in Transplantation Mode
Cited by: 14
Author(s): Qiuxia Wang, Huifeng Sun, Meijia Li, Chenglu Xu, Yayu Zhang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpls.2017.00404

Small RNA Sequencing Reveals Differential miRNA Expression in the Early Development of Broccoli (Brassica oleracea var. italica) Pollen
Cited by: 8
Author(s): Hui Li, Yu Wang, Mei Wu, Lihong Li, Chuan Jin, Qingli Zhang, Chengbin Chen, Wenqin Song, Chunguo Wang
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2021.641678

Specificity and Plasticity of the Functional Ionome of Brassica napus and Triticum aestivum Exposed to Micronutrient or Beneficial Nutrient Deprivation and Predictive Sensitivity of the Ionomic Signatures
Cited by: 9
Author(s): Aurélien D’Oria, Galatéa Courbet, Aurélia Lornac, Sylvain Pluchon, Mustapha Arkoun, Anne Maillard, Philippe Étienne, Sylvain Diquélou, Alain Ourry
Software Mentions: 1
Published: over 5 years ago

10.3389/fphys.2015.00253

Vaginal biogenic amines: biomarkers of bacterial vaginosis or precursors to vaginal dysbiosis?
Cited by: 99
Author(s): Tiffanie M. Nelson, Joanna-Lynn C. Borgogna, Rebecca M. Brotman, Jacques Ravel, Seth T. Walk, Carl J. Yeoman
Software Mentions: 1
Published: almost 11 years ago

10.3389/fphys.2021.683651

ETS1, ELK1, and ETV4 Transcription Factors Regulate Angiopoietin-1 Signaling and the Angiogenic Response in Endothelial Cells
Cited by: 5
Author(s): Sharon Harel, Verónica Sánchez, Alaa Moamer, Javier E. Sanchez-Galán, Mohammad N Abid Hussein, Dominique Mayaki, Mathieu Blanchette, Sabah N. A. Hussain
Software Mentions: 1
Published: about 5 years ago

10.3389/fphys.2021.690185

Comparative Genomics Provide Insights Into Function and Evolution of Odorant Binding Proteins in Cydia pomonella
Cited by: 3
Author(s): Cong Huang, Xue Zhang, Dalin He, Qiang Wu, Rui Tang, Longsheng Xing, Wan‐Xue Liu, Wenkai Wang, Bo Liu, Yu X, Yang Ni, Fanghao Wan, Wanqiang Qian
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2017.01062

The C4 Model Grass Setaria Is a Short Day Plant with Secondary Long Day Genetic Regulation
Cited by: 16
Author(s): Andrew N. Doust, Margarita Mauro-Herrera, John G. Hodge, Jessica Stromski
Software Mentions: 1
Published: about 9 years ago

10.3389/fpls.2020.01264

Rootstock–Scion Interaction Affects Cadmium Accumulation and Tolerance of Malus
Cited by: 19
Author(s): Jun He, Jiangtao Zhou, Huixue Wan, Xiaolei Zhuang, Huifeng Li, Sijun Qin, Deguo Lyu
Software Mentions: 1
Published: about 6 years ago

10.3389/fphys.2018.01399

Proteomic Responses Under Cold Stress Reveal Unique Cold Tolerance Mechanisms in the Pacific White Shrimp (Litopenaeus vannamei)
Cited by: 15
Author(s): J. Peng, Pingping He, Pinyuan Wei, Bin Zhang, Yang Zhao, Qiangyong Li, Xiuli Chen, Min Peng, Dingyuan Zeng, Chunling Yang
Software Mentions: 1
Published: almost 8 years ago

10.3389/fpls.2019.00509

Pinus Susceptibility to Pitch Canker Triggers Specific Physiological Responses in Symptomatic Plants: An Integrated Approach
Cited by: 16
Author(s): Joana Amaral, Bárbara Correia, Carla António, Ana Margarida Rodrigues, Aurelio Gómez-Cádenas, Luís Valledor, Robert D. Hancock, Artur Alves, Glória Pinto
Software Mentions: 1
Published: over 7 years ago

10.3389/fonc.2019.00930

Phospho-Protein Arrays as Effective Tools for Screening Possible Targets for Kinase Inhibitors and Their Use in Precision Pediatric Oncology
Cited by: 7
Author(s): Jakub Neradil, Michal Kýr, Kristýna Polášková, Leoš Křen, Petra Macigova, J. Škoda, Jaroslav Štěrba, Renata Veselská
Software Mentions: 1
Published: almost 7 years ago

10.3389/fonc.2020.562253

Long Noncoding RNA LOC400043 (LINC02381) Inhibits Gastric Cancer Progression Through Regulating Wnt Signaling Pathway
Cited by: 28
Author(s): Meisam Jafarzadeh, Bahram Mohammad Soltani
Software Mentions: 1
Published: almost 6 years ago

10.3389/fonc.2021.691500

A Newly Identified lncBCAS1-4_1 Associated With Vitamin D Signaling and EMT in Ovarian Cancer Cells
Cited by: 3
Author(s): Yi Xue, Ping Wang, Fei Jiang, Jie Yu, Hongmei Ding, Zengli Zhang, Hailong Pei, Bingyan Li
Software Mentions: 1
Published: about 5 years ago

10.3389/fonc.2019.01054

Identification of Candidate Biomarkers and Analysis of Prognostic Values in Oral Squamous Cell Carcinoma
Cited by: 48
Author(s): Guangzhao Huang, Qimeng Wu, Zenan Zheng, Ting-ru Shao, Xiaoyang Lv
Software Mentions: 1
Published: almost 7 years ago

10.3389/fnins.2019.01365

Tryptophan Metabolism by Gut Microbiome and Gut-Brain-Axis: An in silico Analysis
Cited by: 164
Author(s): Harrisham Kaur, Chandrani Bose, Sharmila S. Mande
Software Mentions: 1
Published: over 6 years ago

10.3389/fnins.2018.00220

Transcriptional Profiling of Ligand Expression in Cell Specific Populations of the Adult Mouse Forebrain That Regulates Neurogenesis
Cited by: 11
Author(s): Kasum Azim, Rainer Akkermann, Martina Cantone, Julio Vera, Janusz Jadasz, Patrick Küry
Software Mentions: 1
Published: over 8 years ago

10.3389/fpls.2018.00760

Metabolomics of Early Stage Plant Cell–Microbe Interaction Using Stable Isotope Labeling
Cited by: 30
Author(s): Qiuying Pang, Tong Zhang, Yan Wang, Wenwen Kong, Qijie Guan, Xiufeng Yan, Sixue Chen
Software Mentions: 1
Published: over 8 years ago

10.3389/fpls.2019.01450

Effects of In Vitro Polyploidization on Agronomic Characteristics and Fruit Carotenoid Content; Implications for Banana Genetic Improvement
Cited by: 8
Author(s): Delphine Amah, Angeline van Biljon, Busie Maziya‐Dixon, Maryke Labuschagne, Rony Swennen
Software Mentions: 1
Published: almost 7 years ago

10.1093/aobpla/plw051

Reproductive traits affect the rescue of valuable and endangered multipurpose tropical trees
Cited by: 4
Author(s): Viviane C.O. Sinébou, Muriel Quinet, B. C. Ahohuendo, Anne‐Laure Jacquemart
Software Mentions: 1
Published: about 11 years ago

10.3389/fnmol.2021.665931

Transcriptome Analysis Reveals the Role of Cellular Calcium Disorder in Varicella Zoster Virus-Induced Post-Herpetic Neuralgia
Cited by: 13
Author(s): Songbin Wu, Shaomin Yang, Mingxi Ou, Jiamin Chen, Jinbo Huang, Dehua Xiong, Wuping Sun, Lizu Xiao
Software Mentions: 1
Published: over 5 years ago

10.3389/fnmol.2013.00049

Genome-wide assessment of post-transcriptional control in the fly brain
Cited by: 8
Author(s): Shaul Mezan, Reut Ashwal-Fluss, Rom Shenhav, Manuel Garber, Sebastián Kadener
Software Mentions: 1
Published: over 13 years ago

10.3389/fmicb.2021.619711

Soil Disturbance Affects Plant Productivity via Soil Microbial Community Shifts
Cited by: 7
Author(s): Taylor J. Seitz, Ursel M. E. Schütte, Devin M. Drown
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2017.01459

Comparative Sequence Analysis of Multidrug-Resistant IncA/C Plasmids from Salmonella enterica
Cited by: 27
Author(s): Maria Hoffmann, James B. Pettengill, Narjol González-Escalona, John N. Miller, Sherry Ayers, Shaohua Zhao, Marc W. Allard, Patrick F. McDermott, Eric W. Brown, Steven R. Monday
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2017.01535

Insights on the Effects of Heat Pretreatment, pH, and Calcium Salts on Isolation of Rare Actinobacteria from Karstic Caves
Cited by: 48
Author(s): Bao‐Zhu Fang, Nimaichand Salam, Ming-Xian Han, Jian‐Yu Jiao, Juan Cheng, Du Wei, Min Xiao, Wenjun Li
Software Mentions: 1
Published: about 9 years ago

10.3390/antiox8050120

Cell-Type Specific Analysis of Selenium-Related Genes in Brain
Cited by: 14
Author(s): Alexandru R. Sasuclark, Vedbar S. Khadka, Michael R. Pitts
Software Mentions: 1
Published: over 7 years ago

10.1186/s13104-021-05746-x

Distinctive prokaryotic microbiomes in sympatric plant roots from a Yucatan cenote
Cited by: 0
Author(s): Alejandra Escobar‐Zepeda, Patricia Rosas-Escobar, Laura Márquez-Valdelamar, Patricia De La Torre, Laila P. Partida‐Martínez, Ruben Remegaldo, Alejandro Sánchez-Flores, Fredd Vergara
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2017.00615

Gene Expression Profiling of Transcription Factors of Helicobacter pylori under Different Environmental Conditions
Cited by: 30
Author(s): Miguel A. De la Cruz, Miguel A. Ares, Kristine von Bargen, Leonardo G. Panunzi, Jessica Martínez-Cruz, Hilda‐Alicia Valdez‐Salazar, César Jiménez-Galicia, Javier Torres
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2018.02639

Transcriptome and Proteome of Fish-Pathogenic Streptococcus agalactiae Are Modulated by Temperature
Cited by: 21
Author(s): Guilherme Campos Tavares, Alex F. Carvalho, Felipe Luiz Pereira, Cristiana Perdigão Rezende, Vasco Azevedo, Carlos Augusto Gomes Leal, Henrique César Pereira Figueiredo
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12890-020-01232-5

Combined signaling of NF-kappaB and IL-17 contributes to Mesenchymal stem cells-mediated protection for Paraquat-induced acute lung injury
Cited by: 8
Author(s): Lichun Zhang, Yu Wang, Haitao Shen, Min Zhao
Software Mentions: 1
Published: about 6 years ago

10.1534/g3.115.022137

MicroRNA Maturation and MicroRNA Target Gene Expression Regulation Are Severely Disrupted in Soybeandicer-like1Double Mutants
Cited by: 20
Author(s): Shaun J. Curtin, Jean Michel Michno, Ben Campbell, Javier Gil-Humanes, Sandra M. Mathioni, Reza Hammond, Juan J. Gutiérrez-González, Ryan C. Donohue, Michael B. Kantar, Andrew L. Eamens, Blake C. Meyers, Daniel F. Voytas, Robert M. Stupar
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2021.654783

Reactive Oxygen Species-Related Ceftazidime Resistance Is Caused by the Pyruvate Cycle Perturbation and Reverted by Fe3 + in Edwardsiella tarda
Cited by: 8
Author(s): Jingzhou Ye, Yubin Su, Xuan‐xian Peng, Hui Li
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms19113438

Identification of Soybean Genes Whose Expression is Affected by the Ensifer fredii HH103 Effector Protein NopP
Cited by: 15
Author(s): Jinhui Wang, Jieqi Wang, Chunyan Liu, Chao Ma, Changyu Li, Yongqian Zhang, Zhaoming Qi, Rong Zhu, Yan Shi, Jianan Zou, Qingying Li, Junjie Zhu, Yan Wen, Zhijun Sun, Hanxi Liu, Hongwei Jiang, Zhan Yin, Zhenbang Hu, Qingshan Chen, Xiaoxia Wu, Dawei Xin
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2017.02300

Bacterial Community Dynamics in Dichloromethane-Contaminated Groundwater Undergoing Natural Attenuation
Cited by: 22
Author(s): Justin Wright, Veronica Kirchner, W. Bernard, Nikea Ulrich, Christopher J. McLimans, Maria Fernanda Campa, Terry C. Hazen, Tamzen W. Macbeth, David Marabello, Jacob McDermott, Rachel Mackelprang, Kimberly A. Roth, Regina Lamendella
Software Mentions: 1
Published: almost 9 years ago

10.3389/fmicb.2018.01244

Comparative Genomics of Lactobacillus acidipiscis ACA-DC 1533 Isolated From Traditional Greek Kopanisti Cheese Against Species Within the Lactobacillus salivarius Clade
Cited by: 17
Author(s): Μαρία Κάζου, Voula Alexandraki, Jochen Blom, Bruno Pot, Effie Tsakalidou, Konstantinos Papadimitriou
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2017.01534

Independent Shifts of Abundant and Rare Bacterial Populations across East Antarctica Glacial Foreland
Cited by: 24
Author(s): Wenkai Yan, Hongmei Ma, Guitao Shi, Yuansheng Li, Bo Sun, Xiang Xiao, Yu Zhang
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2020.585614

Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in the Phytopathogenic Fungus Botrytis cinerea
Cited by: 9
Author(s): Yang Xu, Xiaoxia Li, Wenxing Liang, Mengjie Liu
Software Mentions: 1
Published: almost 6 years ago

10.1534/g3.119.400348

Correlating Genotype and Phenotype in the Asexual Yeast Candida orthopsilosis Implicates ZCF29 in Sensitivity to Caffeine
Cited by: 7
Author(s): Kontxi Martinez de San Vicente, Markus S. Schröder, Lisa Lombardi, Elise Iracane, Geraldine Butler
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2017.00659

The Anti-Adhesive Effect of Curcumin on Candida albicans Biofilms on Denture Materials
Cited by: 56
Author(s): Hasanain K. A. Alalwan, Ranjith Rajendran, David F. Lappin, Emilie Combet, Muhammad Shahzad, Douglas Robertson, Christopher J. Nile, Craig Williams, Gordon Ramage
Software Mentions: 1
Published: over 9 years ago

10.1534/g3.120.401735

Gene Copy Number Variation Does Not Reflect Structure or Environmental Selection in Two Recently Diverged California Populations of Suillus brevipes
Cited by: 1
Author(s): Anna Bazzicalupo, Mallory Thomas, Robert M. Mason, Munro-Ehrlich, Sara Branco
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2018.01970

Metabolic Reprogramming of Clostridioides difficile During the Stationary Phase With the Induction of Toxin Production
Cited by: 60
Author(s): Julia Hofmann, Andreas Otto, Mareike Berges, Rebekka Biedendieck, Annika-Marisa Michel, Dörte Becher, Dieter Jahn, Meina Neumann‐Schaal
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2018.02056

1-Methyltryptophan Modifies Apoplast Content in Tomato Plants Improving Resistance Against Pseudomonas syringae
Cited by: 6
Author(s): Loredana Scalschi, Eugenio Llorens, Ana Isabel González-Hernández, M. Valcárcel, Jordi Gamir, Pilar García‐Agustín, Begonya Vicedo, Gemma Camañes
Software Mentions: 1
Published: about 8 years ago

10.3390/genes10060444

Methylome-Wide Association Study in Peripheral White Blood Cells Focusing on Central Obesity and Inflammation
Cited by: 13
Author(s): Ana Arpón, Fermı́n I. Milagro, Omar Ramos-López, María L. Mansego, José Ignacio Riezu-Boj, J. Alfredo Martínéz
Software Mentions: 1
Published: over 7 years ago

10.1186/s12870-021-03019-0

Comparative transcriptome analysis reveals distinct gene expression profiles in Brachypodium distachyon infected by two fungal pathogens
Cited by: 4
Author(s): Guijie Zhu, Chengyu Gao, Chenyu Wu, Mu Li, Jin‐Rong Xu, Huiquan Liu, Qinhu Wang
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2018.00099

iTRAQ-Based Comparative Proteomic Analysis of Adult Schistosoma japonicum from Water Buffalo and Yellow Cattle
Cited by: 13
Author(s): Qixiao Zhai, Zhiqiang Fu, Yang Hong, Xianjun Yu, Qian Han, Lu Ke, Hao Li, Xuefeng Dou, Chuangang Zhu, Jinming Liu, Jiaojiao Lin, Guoqing Li
Software Mentions: 1
Published: over 8 years ago

10.3390/genes11070813

Sensing, Signaling, and Secretion: A Review and Analysis of Systems for Regulating Host Interaction in Wolbachia
Cited by: 19
Author(s): Amelia R.I. Lindsey
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2016.00551

Diel Variation in Gene Expression of the CO2-Concentrating Mechanism during a Harmful Cyanobacterial Bloom
Cited by: 26
Author(s): Giovanni Sandrini, Robert P. Tann, J. Merijn Schuurmans, S.A.M. van Beusekom, H.C.P. Matthijs, Jef Huisman
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2020.01458

The Microbiome of Posidonia oceanica Seagrass Leaves Can Be Dominated by Planctomycetes
Cited by: 37
Author(s): Timo Kohn, Patrick Rast, Nicolai Kallscheuer, Sandra Wiegand, Christian Boedeker, Mike S. M. Jetten, Olga Jeske, John Vollmers, Anne‐Kristin Kaster, Manfred Rohde, Mareike Jogler, Christian Jogler
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2017.00369

Genotypes Associated with Listeria monocytogenes Isolates Displaying Impaired or Enhanced Tolerances to Cold, Salt, Acid, or Desiccation Stress
Cited by: 108
Author(s): Patricia Hingston, Jessica Chen, Bhavjinder K. Dhillon, Chad R. Laing, Claire Bertelli, Victor P. J. Gannon, Taurai Tasara, Kevin Allen, Fiona S. L. Brinkman, Lisbeth Truelstrup Hansen, Siyun Wang
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms20040997

Transcriptomic Analysis for Indica and Japonica Rice Varieties under Aluminum Toxicity
Cited by: 10
Author(s): Peng Zhang, Zhuoran Ding, Zhengzheng Zhong, Hanhua Tong
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2018.03138

Dynamics of Gut Microbiome in Giant Panda Cubs Reveal Transitional Microbes and Pathways in Early Life
Cited by: 25
Author(s): Min Guo, Jianwei Chen, Qiongfang Li, Ying Fu, Guangyi Fan, Jinmin Ma, Ling Peng, Liyun Zeng, Jing Chen, Yayu Wang, Simon Ming‐Yuen Lee
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2229-11-10

Field transcriptome revealed critical developmental and physiological transitions involved in the expression of growth potential in japonicarice
Cited by: 108
Author(s): Yutaka Satō, Baltazar A. Antonio, Nobukazu Namiki, Ritsuko Motoyama, Kazuhiko Sugimoto, Hinako Takehisa, Hiroshi Minami, Kaori Kamatsuki, Makoto Kusaba, Hirohiko Hirochika, Yoshiaki Nagamura
Software Mentions: 1
Published: over 15 years ago

10.3390/ijms20071691

Dynamic TMT-Based Quantitative Proteomics Analysis of Critical Initiation Process of Totipotency during Cotton Somatic Embryogenesis Transdifferentiation
Cited by: 12
Author(s): Haixia Guo, Huihui Guo, Li Zhang, Yijie Fan, Yuhang Fan, Zhengmin Tang, Fanchang Zeng
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2018.00568

Comparative Microbiome Analysis of a Fusarium Wilt Suppressive Soil and a Fusarium Wilt Conducive Soil From the Châteaurenard Region
Cited by: 93
Author(s): Katarzyna Siegel-Hertz, Véronique Edel-Hermann, Emilie Chapelle, Sébastien Terrat, Jos M. Raaijmakers, Christian Steinberg
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2016.01892

Waste Conversion into n-Caprylate and n-Caproate: Resource Recovery from Wine Lees Using Anaerobic Reactor Microbiomes and In-line Extraction
Cited by: 96
Author(s): Leo A. Kucek, Jiajie Xu, Mytien Nguyen, Largus T. Angenent
Software Mentions: 1
Published: almost 10 years ago

10.3389/fimmu.2020.01474

Nicotine Changes the microRNA Profile to Regulate the FOXO Memory Program of CD8+ T Cells in Rheumatoid Arthritis
Cited by: 9
Author(s): Caroline Wasén, Caroline Ospelt, Alessandro Camponeschi, Malin C. Erlandsson, Karin Andersson, Sofia Töyrä Silfverswärd, Maria Bokarewa
Software Mentions: 1
Published: about 6 years ago

10.3389/fimmu.2019.01229

Differential Proinflammatory Signature in Vestibular Migraine and Meniere Disease
Cited by: 50
Author(s): Marisa Flook, Lidia Frejo, Alvaro Gallego‐Martinez, Eduardo Martín-Sanz, Marcos Rossi-Izquierdo, Juan Carlos Amor-Dorado, Andrés Soto-Varela, Sofía Santos-Pérez, Ángel Batuecas‐Caletrío, Juan Manuel Espinosa-Sánchez, Patricia Pérez-Carpena, Marta Martínez-Martínez, Ismael Arán, José A. Lopez-Escamez
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2019.02866

Clostridioides difficile Colonization Is Differentially Associated With Gut Microbiome Profiles by Infant Feeding Modality at 3–4 Months of Age
Cited by: 20
Author(s): Kelsea M. Drall, Hein Min Tun, Nadia Morales-Lizcano, Theodore Konya, David S. Guttman, Catherine J. Field, Rupasri Mandal, David S. Wishart, Allan B. Becker, Meghan B. Azad, Diana L. Lefebvre, Piush J. Mandhane, Theo J. Moraes, Malcolm R. Sears, Stuart E. Turvey, Padmaja Subbarao, James A. Scott, Anita L. Kozyrskyj
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12870-015-0414-8

Histone chaperones in Arabidopsis and rice: genome-wide identification, phylogeny, architecture and transcriptional regulation
Cited by: 41
Author(s): Amit Kumar Tripathi, Kundan Singh, Ashwani Pareek, Sneh L. Singla‐Pareek
Software Mentions: 1
Published: over 11 years ago

10.1128/AAC.01640-17

Discovery of New Inhibitors of Toxoplasma gondii via the Pathogen Box
Cited by: 49
Author(s): Jérémy Spalenka, Sandie Escotte-Binet, Ali Bakiri, Jane Hubert, Jean‐Hugues Renault, Frédéric Velard, Simon Duchateau, Dominique Aubert, A Huguenin, Isabelle Villena
Software Mentions: 1
Published: over 8 years ago

10.1038/srep10932

Phenotypic diversity within a Pseudomonas aeruginosa population infecting an adult with cystic fibrosis
Cited by: 79
Author(s): Shawn T. Clark, Julio Diaz Caballero, Mary Cheang, Bryan Coburn, Pauline W. Wang, Sylva L. Donaldson, Yu Zhang, Mingyao Liu, Shaf Keshavjee, Yvonne Yau, Valerie Waters, D. Elizabeth Tullis, David S. Guttman, David Hwang
Software Mentions: 1
Published: over 11 years ago

10.3389/fimmu.2021.559925

Immunological Hallmarks of Inflammatory Status in Vaso-Occlusive Crisis of Sickle Cell Anemia Patients
Cited by: 10
Author(s): Alexander Leonardo Silva-Junior, Nadja Pinto Garcia, Evilázio Cunha Cardoso, S Dias, Andréa Monteiro Tarragô, Nelson Abrahim Fraiji, Marcos Antônio Silvestre Gomes, Laurence Rodrigues do Amaral, Andréa Teixeira-Carvalho, Olindo Assis Martins‐Filho, Erich Vinícius De Paula, Allyson Guimarães Costa, Adriana Malheiro
Software Mentions: 1
Published: over 5 years ago

10.1128/AAC.00829-17

Identification and Mode of Action of a Plant Natural Product Targeting Human Fungal Pathogens
Cited by: 32
Author(s): Stéphane Dorsaz, Tiia Snäkä, Quentin Favre-Godal, Pierre Marc Xavier Maudens, Nathalie Boulens, Pascal Furrer, Samad Nejad Ebrahimi, Matthias Hamburger, Éric Allémann, Katia Gindro, Emerson Ferreira Queiroz, Howard Riezman, Jean‐Luc Wolfender, Dominique Sanglard
Software Mentions: 1
Published: about 9 years ago

10.3389/fimmu.2020.590121

Maturation of Monocyte-Derived DCs Leads to Increased Cellular Stiffness, Higher Membrane Fluidity, and Changed Lipid Composition
Cited by: 21
Author(s): Jennifer J. Lühr, Nils Alex, Lukas Amon, Martin Kräter, Markéta Kubánková, Erdinç Sezgin, Christian Lehmann, Lukas Heger, Gordon F. Heidkamp, Ana‐Sunčana Smith, Vasily Zaburdaev, Rainer A. Böckmann, Ilya Levental, Michael L. Dustin, Christian Eggeling, Jochen Guck, Diana Dudziak
Software Mentions: 1
Published: almost 6 years ago

10.1038/srep15930

Chemogenomic profiling of Plasmodium falciparum as a tool to aid antimalarial drug discovery
Cited by: 35
Author(s): Anupam Pradhan, Geoffrey H. Siwo, Naresh Singh, Brian Martens, Bharath Balu, Katrina A. Button-Simons, Aiping Tan, Min Zhang, Kenneth O. Udenze, Rays H. Y. Jiang, Michael T. Ferdig, John Adams, Dennis E. Kyle
Software Mentions: 1
Published: almost 11 years ago

10.1007/s00125-021-05491-7

Polygenic risk scores predict diabetes complications and their response to intensive blood pressure and glucose control
Cited by: 18
Author(s): Johanne Tremblay, Mounsif Haloui, Redha Attaoua, Ramzan Tahir, Camil Hishmih, François Harvey, François-Christophe Marois-Blanchet, Carole Long, Paul Simon, Lara Santucci, Candan Hızel, John Chalmers, Michel Marre, Stephen Harrap, Renata Cífková, Alena Krajčoviechová, David R. Matthews, Bryan Williams, Neil Poulter, Sophia Zoungas, Stephen Colagiuri, Giuseppe Mancia, Diederick E. Grobbee, Anthony Rodgers, Liusheng Liu, Mawussé Agbessi, Vanessa Bruat, Marie-Julie Favé, Michelle P Harwood, Philip Awadalla, Mark Woodward, Julie Hussin, Pavel Hamet
Software Mentions: 1
Published: about 5 years ago

10.1016/j.dib.2020.105636

Data on miRNome changes in human cells exposed to nano- or ionic- forms of Cadmium
Cited by: 3
Author(s): Laura Paesano, Marta Marmiroli, Massimiliano G. Bianchi, Jason C. White, Ovidio Bussolati, A. Zappettini, Marco Villani, Nelson Marmiroli
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms20246160

Quantitative Proteomic Analysis Uncovers the Mediation of Endoplasmic Reticulum Stress-Induced Autophagy in DHAV-1-Infected DEF Cells
Cited by: 11
Author(s): Jingjing Lan, Ruihua Zhang, Honglei Yu, Jingyu Wang, Wenxiang Xue, Junhao Chen, Shaoli Lin, Yu Wang, Zhixun Xie, Shijin Jiang
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.dib.2018.11.090

Transcriptomic data for analyzing global gene expression patterns in Methicillin-resistance Staphylococcus aureus in response to spermine and oxacillin stress
Cited by: 2
Author(s): Shrikant Pawar, Xiangyu Yao, Chao Lu
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.dib.2017.06.032

Fatty acid and lipidomic data in normal and tumor colon tissues of rats fed diets with and without fish oil
Cited by: 2
Author(s): Zora Djurić, Muhammad N. Aslam, B Simon, Ananda Sen, Yan Jiang, Jianwei Ren, Rena Chan, Tanu Soni, Thekkelnaycke M. Rajendiran, William L. Smith, Dean E. Brenner
Software Mentions: 1
Published: about 9 years ago

10.1002/acn3.50931

Intrathecal cytokine profile in neuropathy with anti‐neurofascin 155 antibody
Cited by: 11
Author(s): Hidenori Ogata, Zhihui Xu, Ryo Yamasaki, Takayuki Fujii, Akira Machida, Nobutoshi Morimoto, Kenichi Kaida, Teruaki Masuda, Yukio Ando, Motoi Kuwahara, Susumu Kusunoki, Yuri Nakamura, Takuya Matsushita, Noriko Isobe, Jun Ichi Kira
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12014-020-09279-6

Effects of cryopreservation and long-term culture on biological characteristics and proteomic profiles of human umbilical cord-derived mesenchymal stem cells
Cited by: 19
Author(s): Xufeng Fu, Bo Xu, Jiang Jiang, Xing Du, Xiaoli Yu, Yaping Yan, Shanshan Li, Briauna Marie Inglis, Huiming Ma, Hongyan Wang, Xiuying Pei, Wei Si
Software Mentions: 1
Published: over 6 years ago

10.1186/s12014-018-9214-0

Differential analysis of quantitative proteome and acetyl-proteome profiling between premenopausal and postmenopausal ovarian tissues
Cited by: 1
Author(s): Jun Yi, Huatianshu Hu, Peipei Shi, Shuangshuang Song, Jing Zhao, Lan Xu, Weining Yang, Bin Li, Zhu Jin, Shien Zou
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep21084

Serum microRNA microarray analysis identifies miR-4429 and miR-4689 are potential diagnostic biomarkers for biliary atresia
Cited by: 38
Author(s): Rui Dong, Zhen Shen, Chengchao Zheng, Gong Chen, Shan Zheng
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms21010278

Changes in Proteome and Protein Phosphorylation Reveal the Protective Roles of Exogenous Nitrogen in Alleviating Cadmium Toxicity in Poplar Plants
Cited by: 29
Author(s): Jin-Liang Huang, Xiaolu Wu, Fengchun Tian, Qi Chen, Pengrui Luo, Fan Zhang, Xueqin Wan, Yu Zhong, Qinglin Liu, Tiantian Lin
Software Mentions: 1
Published: over 6 years ago

10.1038/srep21618

Correlations of Fecal Metabonomic and Microbiomic Changes Induced by High-fat Diet in the Pre-Obesity State
Cited by: 109
Author(s): Hong Lin, Yanpeng An, Fuhua Hao, Yulan Wang, Huiru Tang
Software Mentions: 1
Published: over 10 years ago

10.1186/s12870-018-1569-x

Genome-wide identification and localization of chalcone synthase family in soybean (Glycine max [L]Merr)
Cited by: 34
Author(s): Arun Kumaran Anguraj Vadivel, Kevin Krysiak, Gang Tian, Sangeeta Dhaubhadel
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12014-021-09314-0

Quantitative proteomics analysis of lysine 2-hydroxyisobutyrylation in IgA nephropathy
Cited by: 5
Author(s): Shaoying Huang, Fengping Zheng, Lin Hua, Xianqing Zhou, Huixuan Xu, Cantong Zhang, Weier Dai, Berthold Hocher, Xinzhou Zhang, Donge Tang, Yong Dai
Software Mentions: 1
Published: over 5 years ago

10.1111/cei.13403

Expression profiling of single cells and patient cohorts identifies multiple immunosuppressive pathways and an altered NK cell phenotype in glioblastoma
Cited by: 48
Author(s): Helen J. Close, Lucy F. Stead, Jérémie Nsengimana, Katrina A. Reilly, Alastair P. Droop, Heiko Wurdak, Ryan Mathew, Robert Corns, Julia Newton‐Bishop, Alan Melcher, Susan Short, Graham P. Cook, Erica Wilson
Software Mentions: 1
Published: over 6 years ago

10.1038/srep24967

Model-based genotype-phenotype mapping used to investigate gene signatures of immune sensitivity and resistance in melanoma micrometastasis
Cited by: 17
Author(s): Guido Santos, Светослав Николов, Xin Lai, Martin Eberhardt, Florian S. Dreyer, Sushmita Paul, Gerold Schuler, Julio Vera
Software Mentions: 1
Published: over 10 years ago

10.1186/s13148-018-0541-9

Epigenome-wide DNA methylation regulates cardinal pathological features of psoriasis
Cited by: 66
Author(s): Aditi Chandra, Swapan Senapati, Sudipta Roy, Gobinda Chatterjee, Raghunath Chatterjee
Software Mentions: 1
Published: about 8 years ago

10.3390/cells9020513

Helicobacter Pylori Targets the EPHA2 Receptor Tyrosine Kinase in Gastric Cells Modulating Key Cellular Functions
Cited by: 18
Author(s): Marina Concli Leite, Miguel Sardinha Marques, Joana Melo, M. Pinto, Bruno Cavadas, Miguel Aroso, María Gómez-Lázaro, Raquel Seruca, Céu Figueiredo
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21062131

Influence of Salt Stress on Growth of Spermosphere Bacterial Communities in Different Peanut (Arachis hypogaea L.) Cultivars
Cited by: 9
Author(s): Yang Xu, Dai Zhang, Lei Dai, Hong Ding, Dunwei Ci, Feifei Qin, Guanchu Zhang, Zhimeng Zhang
Software Mentions: 1
Published: over 6 years ago

10.1038/srep28327

Metatranscriptomics reveals the molecular mechanism of large granule formation in granular anammox reactor
Cited by: 35
Author(s): Samik Bagchi, Regina Lamendella, Steven Strutt, Mark C.M. van Loosdrecht, Pascal E. Saikaly
Software Mentions: 1
Published: about 10 years ago

10.1186/s12870-017-1183-3

Transcriptomic analysis of wound xylem formation in Pinus canariensis
Cited by: 17
Author(s): Víctor Chano, Carmen Collada, Álvaro Soto
Software Mentions: 1
Published: almost 9 years ago

10.3390/cells10061495

Phenotypic Characterization by Single-Cell Mass Cytometry of Human Intrahepatic and Peripheral NK Cells in Patients with Hepatocellular Carcinoma
Cited by: 6
Author(s): Yuichi Yoshida, Sachiyo Yoshio, Taiji Yamazoe, Taizo Mori, Yuriko Tsustui, Hironari Kawai, Shiori Yoshikawa, Takasuke Fukuhara, Tomoyoshi Okamoto, Yoshihiro Ono, Yu Takahashi, Ryuki Hashida, Takumi Kawaguchi, Akinobu Taketomi, Tatsuya Kanto
Software Mentions: 1
Published: about 5 years ago

10.1186/s12866-017-1047-x

Insights into the Geobacillus stearothermophilus species based on phylogenomic principles
Cited by: 39
Author(s): Sara Burgess, Steve Flint, D. Lindsay, Murray P. Cox, Patrick J. Biggs
Software Mentions: 1
Published: about 9 years ago

10.1038/srep31745

Fine needle aspirate flow cytometric phenotyping characterizes immunosuppressive nature of the mesothelioma microenvironment
Cited by: 23
Author(s): Patrick H. Lizotte, Robert E. Jones, Lauren Keogh, Elena Ivanova, Hongye Liu, Mark M. Awad, Peter S. Hammerman, Ritu R. Gill, William G. Richards, David A. Barbie, Adam J. Bass, Raphael Bueno, Jessie M. English, Mark Bittinger, Kwok-Kin Wong
Software Mentions: 1
Published: about 10 years ago

10.3390/cells9041003

Sofosbuvir Activates EGFR-Dependent Pathways in Hepatoma Cells with Implications for Liver-Related Pathological Processes
Cited by: 9
Author(s): Denisa Bojkova, Sandra Westhaus, Rui Costa, Lejla Timmer, Nora Funkenberg, Marek Korencak, Hendrik Streeck, Florian W. R. Vondran, Ruth Broering, Stefan Heinrichs, Karl S. Lang, Sandra Ciesek
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21113755

Identification and Expression Profiling of Toll-Like Receptors of Brown Trout (Salmo trutta) during Proliferative Kidney Disease
Cited by: 13
Author(s): Arun Sudhagar, Mansour El-Matbouli, Gokhlesh Kumar
Software Mentions: 1
Published: over 6 years ago

Projects: cran: gplots

Enhanced Analysis

Science Score: 85/100

Bonuses:

Penalties:

Papers Mentioning gplots 2,122