10.1038/s41598-020-62045-4

Teriparatide relieves ovariectomy-induced hyperalgesia in rats, suggesting the involvement of functional regulation in primary sensory neurons by PTH-mediated signaling
Cited by: 8
Author(s): Tomoya Tanaka, Ryoko Takao-Kawabata, Aya Takakura, Yukari Shimazu, Momoko Nakatsugawa, Akitoshi Ito, Ji-Won Lee, Koh Kawasaki, Tadahiro Iimura
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-62175-9

HLA-A, -B, -C, -DRB1, -DQA1, and -DQB1 allele and haplotype frequencies defined by next generation sequencing in a population of East Croatia blood donors
Cited by: 6
Author(s): Stana Tokić, Veronika Žižková, Mario Štefanić, Ljubica Glavaš‐Obrovac, Saška Marczi, Marina Samardžija, Kateřina Sikorová, Martin Petřek
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-62886-z

Transcriptome analysis reveals differentially expressed genes associated with high rates of egg production in chicken hypothalamic-pituitary-ovarian axis
Cited by: 35
Author(s): Suchismita Mishra, Binlong Chen, Qing Zhu, Zhongxian Xu, Chunyou Ning, Huadong Yin, Yan Wang, Xiaoling Zhao, Xiaolan Fan, Mingyao Yang, Deying Yang, Qingyong Ni, Yan Li, Mingwang Zhang, Diyan Li
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-63579-3

Hepatocyte-specific deletion of Pparα promotes NAFLD in the context of obesity
Cited by: 69
Author(s): Marion Régnier, Arnaud Polizzi, Sarra Smati, Céline Lukowicz, Anne Fougerat, Yannick Lippi, Edwin Fouché, Frédèric Lasserre, Claire Naylies, Colette Bétoulières, Valentin Barquissau, Etienne Mouisel, Justine Bertrand‐Michel, Aurélie Batut, Talal Al Saati, Cécile Canlet, Marie Tremblay-Franco, Sandrine Ellero‐Simatos, Dominique Langin, Catherine Postic, Walter Wahli, Nicolas Loiseau, Hervé Guillou, Alexandra Montagner
Software Mentions: 2
Published: over 6 years ago

10.1186/s12915-014-0086-0

A comprehensive evaluation of rodent malaria parasite genomes and gene expression
Cited by: 226
Author(s): Thomas D. Otto, Ulrike Böhme, Andrew P. Jackson, Martin Hunt, Blandine Franke-Fayard, Wieteke A. M. Hoeijmakers, Agnieszka A. Religa, Lauren Robertson, Mandy Sanders, Solabomi A. Ogun, Deirdre Cunningham, Annette Erhart, Oliver Billker, Shahid M. Khan, Hendrik G. Stunnenberg, Jean Langhorne, Anthony A. Holder, Andrew P. Waters, Chris Newbold, Arnab Pain, Matthew Berriman, Chris J. Janse
Software Mentions: 2
Published: almost 12 years ago

10.1186/s12859-016-1404-z

ConEVA: a toolbox for comprehensive assessment of protein contacts
Cited by: 23
Author(s): Badri Adhikari, Jackson Nowotny, Debswapna Bhattacharya, Jie Hou, Jianlin Cheng
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-020-66093-8

Aquaponics using a fish farm effluent shifts bacterial communities profile in halophytes rhizosphere and endosphere
Cited by: 7
Author(s): Vanessa Oliveira, Patrícia Martins, Bruna Marques, Daniel F. R. Cleary, Ana I. Lillebø, Ricardo Calado
Software Mentions: 2
Published: about 6 years ago

10.1186/s12859-015-0656-3

groHMM: a computational tool for identifying unannotated and cell type-specific transcription units from global run-on sequencing data
Cited by: 56
Author(s): Minho Chae, Charles G. Danko, W. Lee Kraus
Software Mentions: 2
Published: about 11 years ago

10.1186/s12859-017-1945-9

Explorative visual analytics on interval-based genomic data and their metadata
Cited by: 4
Author(s): Vahid Jalili, Matteo Matteucci, Marco Masseroli, Stefano Ceri
Software Mentions: 2
Published: over 8 years ago

10.1186/s12859-017-1637-5

Drug repositioning for enzyme modulator based on human metabolite-likeness
Cited by: 10
Author(s): Yoon Hyeok Lee, Hojae Choi, Seongyong Park, Boah Lee, Gwan‐Su Yi
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-020-69418-9

iPSC-derived progenitor stromal cells provide new insights into aberrant musculoskeletal development and resistance to cancer in down syndrome
Cited by: 4
Author(s): Yekaterina Galat, Mariana Perepitchka, Irina Elcheva, Stephen Iannaccone, Philip M. Iannaccone, Vasiliy Galat
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-71822-0

Effects of time and temperature during melanging on the volatile profile of dark chocolate
Cited by: 4
Author(s): Caitlin Clark, Harmonie M. Bettenhausen, Adam L. Heuberger, Jeffrey P. Miller, Linxing Yao, Margaret E. Stone
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-71672-w

A carotenoid-deficient mutant of the plant-associated microbe Pantoea sp. YR343 displays an altered membrane proteome
Cited by: 6
Author(s): Sushmitha Vijaya Kumar, Paul E. Abraham, Gregory B. Hurst, Karuna Chourey, Amber N. Bible, Robert L. Hettich, Mitchel J. Doktycz, Jennifer L. Morrell‐Falvey
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.42989

Haplotypes spanning centromeric regions reveal persistence of large blocks of archaic DNA
Cited by: 46
Author(s): Sasha A. Langley, Karen H. Miga, Gary H. Karpen, Charles H. Langley
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-020-72078-4

Esterified carotenoids are synthesized in petals of carnation (Dianthus caryophyllus) and accumulate in differentiated chromoplasts
Cited by: 10
Author(s): Luna Iijima, Sanae Kishimoto, Akemi Ohmiya, Masafumi Yagi, Emi Okamoto, Taira Miyahara, Takashi Tsujimoto, Yoshihiro Ozeki, Nahoko Uchiyama, Takashi Hakamatsuka, Takanobu Kouno, Emilio Cano, Mitsuru Shimizu, Masahiro Nishihara
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-72172-7

Hepatic lipocalin 2 promotes liver fibrosis and portal hypertension
Cited by: 25
Author(s): Jiegen Chen, Josepmaria Argemí, Gemma Òdena, Mingjiang Xu, Yan Cai, Veronica Massey, Austin Parrish, Rajanikanth Vadigepalli, José Altamirano, Joaquín Cabezas, Pere Ginès, Juan Caballería, Natasha T. Snider, Pau Sancho‐Bru, Shizuo Akira, Ivan Rusyn, Bin Gao, R. Bataller
Software Mentions: 2
Published: almost 6 years ago

10.5713/ajas.19.0221

Effects of the dietary digestible fiber-to-starch ratio on pellet quality, growth and cecal microbiota of Angora rabbits
Cited by: 3
Author(s): Yang Gao, Fei Zhao, Ting He, Jiantao Li, Dan Guo
Software Mentions: 2
Published: over 6 years ago

10.1186/s13075-017-1474-y

VISTA deficiency attenuates antibody-induced arthritis and alters macrophage gene expression in response to simulated immune complexes
Cited by: 31
Author(s): Sabrina Ceeraz, Susan K. Eszterhas, Petra Sergent, David A. Armstrong, Alix Ashare, Thomas Broughton, Li Wang, Dov A. Pechenick, Christopher M. Burns, Randolph J. Noelle, Matthew P. Vincenti, Roy A. Fava
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-020-73823-5

Circadian regulation of diel vertical migration (DVM) and metabolism in Antarctic krill Euphausia superba
Cited by: 5
Author(s): Fabio Piccolin, Lisa Pitzschler, Alberto Biscontin, So Kawaguchi, Bettina Meyer
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-75518-3

Establishment and characterisation of testicular cancer patient-derived xenograft models for preclinical evaluation of novel therapeutic strategies
Cited by: 3
Author(s): Gerda de Vries, Ximena Rosas-Plaza, Gert Jan Meersma, Vincent Christiaan Leeuwenburgh, Klaas Kok, Albert Suurmeijer, Marcel A.T.M. van Vugt, Jourik A. Gietema, Steven de Jong
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-78452-6

The potential role of Arhgef33 RhoGEF in foveal development in the zebra finch retina
Cited by: 7
Author(s): T Sugiyama, Haruka Yamamoto, Tetsuo Kon, Taro Chaya, Yoshihiro Omori, Yutaka Suzuki, Kentaro Abe, Dai Watanabe, Takahisa Furukawa
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-78351-w

Multi-omic approach provides insights into osmoregulation and osmoconformation of the crab Scylla paramamosain
Cited by: 18
Author(s): Jun Niu, Xue Lei Hu, Jack Chi-Ho Ip, Ka Yan, Yueh‐Bih Tang, Yaqin Wang, Jing Qin, Jian‐Wen Qiu, Ting‐Fung Chan, Ka Hou Chu
Software Mentions: 2
Published: over 5 years ago

10.1186/ar4369

Proteomic profiling and functional characterization of early and late shoulder osteoarthritis
Cited by: 32
Author(s): John Paul Wanner, Roopashree Subbaiah, Yelenna Skomorovska-Prokvolit, Yousef Shishani, Éric Boilard, Sujatha Mohan, Robert J. Gillespie, Masaru Miyagi, Reuben Gobezie
Software Mentions: 2
Published: over 13 years ago

10.1038/s41598-021-82538-0

Alterations in the gut bacterial microbiome in people with type 2 diabetes mellitus and diabetic retinopathy
Cited by: 83
Author(s): Taraprasad Das, Rajagopalaboopathi Jayasudha, SamaKalyana Chakravarthy, Gumpili Sai Prashanthi, Archana Bhargava, Mudit Tyagi, Padmaja Kumari Rani, Rajeev Reddy Pappuru, Savitri Sharma, Sisinthy Shivaji
Software Mentions: 2
Published: over 5 years ago

10.1007/s00204-021-03008-0

Integration of transcriptome analysis with pathophysiological endpoints to evaluate cigarette smoke toxicity in an in vitro human airway tissue model
Cited by: 8
Author(s): Rui Xiong, Yue Wu, Qiangen Wu, Levan Muskhelishvili, Kelly J. Davis, Priya Tripathi, Ying Chen, Tao Chen, Matthew Bryant, Hans Rosenfeldt, Sheila M. Healy, Xuefei Cao
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-82801-4

Drosophila oocyte proteome composition covaries with female mating status
Cited by: 9
Author(s): Caitlin E. McDonough-Goldstein, Scott Pitnick, Steve Dorus
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-82640-3

The distribution of antibiotic resistance genes in chicken gut microbiota commensals
Cited by: 26
Author(s): Helena Juřicová, Jitka Matiasovicova, Tereza Kubasová, Darina Čejková, Ivan Rychlı́k
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-83380-0

The acute transcriptional responses to dietary methionine restriction are triggered by inhibition of ternary complex formation and linked to Erk1/2, mTOR, and ATF4
Cited by: 15
Author(s): Kirsten P. Stone, Sujoy Ghosh, Jean Paul Kovalik, Manda Orgeron, Desiree Wanders, Landon C. Sims, Thomas W. Gettys
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-83913-7

CIBERSORT analysis of TCGA and METABRIC identifies subgroups with better outcomes in triple negative breast cancer
Cited by: 47
Author(s): Kelly E. Craven, Yesim Gökmen‐Polar, Sunil Badve
Software Mentions: 2
Published: over 5 years ago

10.1128/AEM.00515-17

Microbiota in Exhaled Breath Condensate and the Lung
Cited by: 14
Author(s): Laura Glendinning, Steven H. Wright, Peter Tennant, Andrew C. Gill, David Collie, Gerry McLachlan
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-021-85230-5

Modeling preeclampsia using human induced pluripotent stem cells
Cited by: 25
Author(s): Mariko Horii, Robert Morey, Tony Bui, Ojeni Touma, Katelyn N. Nelson, Hee-Young Cho, Hannah Rishik, Louise C. Laurent, Mana M. Parast
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-86316-w

MiRNA expression profiling and emergence of new prognostic signature for oral squamous cell carcinoma
Cited by: 24
Author(s): Christo Rajan, Vikas Roshan, Imran Khan, V. G. Manasa, Iris Himal, K Jayasree, Shaji Thomas, Paturu Kondaiah, S. Kannan
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-86454-1

Longitudinal study of the scalp microbiome suggests coconut oil to enrich healthy scalp commensals
Cited by: 9
Author(s): Rituja Saxena, Parul Mittal, Cécile Clavaud, Darshan B. Dhakan, Nita Roy, Lionel Breton, Namita Misra, Vineet K. Sharma
Software Mentions: 2
Published: over 5 years ago

10.18632/aging.103783

Gene expression profiles during postnatal development of the liver and pancreas in giant pandas
Cited by: 3
Author(s): Jinnan Ma, Fang Shen, Lei Chen, Honglin Wu, Yan Huang, Zhenxin Fan, Rong Hou, Bisong Yue, Xiuyue Zhang
Software Mentions: 2
Published: about 6 years ago

10.1186/s13071-019-3506-8

Anopheles aquasalis transcriptome reveals autophagic responses to Plasmodium vivax midgut invasion
Cited by: 7
Author(s): Rosa Amélia Gonçalves Santana, Maurício Oliveira, Iria Cabral, Rubens Celso Andrade Silva, Débora Raysa Teixeira de Sousa, L. S. Ferreira, Marcus Vinícius Guimarães Lacerda, Wuelton Marcelo Monteiro, Patrícia Abrantes, Maria das Graças Vale Barbosa Guerra, Henrique Silveira
Software Mentions: 2
Published: over 7 years ago

10.3897/zookeys.540.9649

Characterisation of the chemical profiles of Brazilian and Andean morphotypes belonging to the Anastrepha fraterculus complex (Diptera, Tephritidae)
Cited by: 13
Author(s): Lucie Vaníčková, Radka Břízová, Antonio Pompeiano, Luana Lima Ferreira, Nathaly Costa de Aquino, Raphael de Farias Tavares, Laura D. Rodriguez, Adriana de Lima Mendonça, Nelson A. Canal, Ruth R. Do Nascimento
Software Mentions: 2
Published: almost 11 years ago

10.1186/s13071-018-3007-1

Hints on T cell responses in a fish-parasite model: Enteromyxum leei induces differential expression of T cell signature molecules depending on the organ and the infection status
Cited by: 24
Author(s): M. Carla Piazzon, Itziar Estensoro, Josep Àlvar Calduch-Giner, R. del Pozo, Amparo Picard‐Sánchez, Jaume Pérez‐Sánchez, Ariadna Sitjà‐Bobadilla
Software Mentions: 2
Published: about 8 years ago

10.1186/s13071-016-1642-y

CAP protein superfamily members in Toxocara canis
Cited by: 6
Author(s): Andreas J. Stroehlein, Neil D. Young, Ross S. Hall, Pasi K. Korhonen, Andreas Hofmann, Paul W. Sternberg, Abdul Jabbar, Robin B. Gasser
Software Mentions: 2
Published: about 10 years ago

10.1186/s13071-019-3405-z

Interpreting mosquito feeding patterns in Australia through an ecological lens: an analysis of blood meal studies
Cited by: 18
Author(s): Eloise Stephenson, Amanda K. Murphy, Cassie C. Jansen, Alison J. Peel, Hamish McCallum
Software Mentions: 2
Published: over 7 years ago

10.12688/wellcomeopenres.15452.1

Untargeted metabolomics to understand the basis of phenotypic differences in amphotericin B-resistant Leishmania parasites
Cited by: 10
Author(s): Andrew W. Pountain, Michael P. Barrett
Software Mentions: 2
Published: almost 7 years ago

10.3390/pathogens6040045

The Use of Hyperimmune Chicken Reference Sera Is Not Appropriate for the Validation of Influenza Pseudotype Neutralization Assays
Cited by: 0
Author(s): Francesca Ferrara, Eleonora Molesti, Simon D. Scott, Giovanni Cattoli, Nigel Temperton
Software Mentions: 2
Published: almost 9 years ago

10.7717/peerj.10053

Silicon flow from root to shoot in pepper: a comprehensive in silico analysis reveals a potential linkage between gene expression and hormone signaling that stimulates plant growth and metabolism
Cited by: 9
Author(s): Fernando Carlos Gómez-Meriño, Libia Iris Trejo-Téllez, Atonaltzin García-Jiménez, Hugo Fernando Escobar-Sepúlveda, Sara Monzerrat Ramírez-Olvera
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-88904-2

A new approach to radon temporal correction factor based on active environmental monitoring devices
Cited by: 6
Author(s): Tiberius Dicu, Bety-Denissa Burghele, Marius Lucian Botoș, Alexandra Cucoş, Gabriel Dobrei, Ştefan Florică, Ș Grecu, Alexandru Lupulescu, Istvan Pap, Kinga Szacsvai, Ancuta Radu Tenter, Carlos Sàinz
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.9054

Intra-lake response of Arcellinida (testate lobose amoebae) to gold mining-derived arsenic contamination in northern Canada: Implications for environmental monitoring
Cited by: 5
Author(s): Nawaf A. Nasser, R. Timothy Patterson, Jennifer M. Galloway, Hendrik Falck
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.1597

Comparative morphology of the mouthparts of the megadiverse South African monkey beetles (Scarabaeidae: Hopliini): feeding adaptations and guild structure
Cited by: 20
Author(s): Florian Karolyi, Teresa Hansal, Harald W. Krenn, Jonathan F. Colville
Software Mentions: 2
Published: over 10 years ago

10.7717/peerj.8101

Co-expression analysis and ceRNA network reveal eight novel potential lncRNA biomarkers in hepatocellular carcinoma
Cited by: 6
Author(s): Renchao Zou, Zhitian Shi, Shufeng Xiao, Ke Yang, Haoran Tang, Taihu Wu, Zhitang Guo, Ni Fan, Sanqi An, Lin Wang
Software Mentions: 2
Published: over 6 years ago

10.3390/v11090847

Rice Dwarf Virus Small RNA Profiles in Rice and Leafhopper Reveal Distinct Patterns in Cross-Kingdom Hosts
Cited by: 1
Author(s): Yu Wang, Rui Qiao, Chunhong Wei, Yang Li
Software Mentions: 2
Published: almost 7 years ago

10.7717/peerj.8176

Systematic evaluation of the gut microbiome of swamp eel (<i>Monopterus albus</i>) by 16S rRNA gene sequencing
Cited by: 6
Author(s): Xuan Chen, Shouguo Fang, Lili Wei, Qiuyan Zhong
Software Mentions: 2
Published: over 6 years ago

10.1080/21505594.2020.1750123

Malate enhances survival of zebrafish against <i>Vibrio alginolyticus</i> infection in the same manner as taurine
Cited by: 35
Author(s): Meisongzhu Yang, Di Xu, Dai-xiao Yang, Lü Li, Xuan‐xian Peng, Zhuang‐Gui Chen, Hui Li
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.6526

TarSynFlow, a workflow for bacterial genome comparisons that revealed genes putatively involved in the probiotic character of<i>Shewanella putrefaciens</i>strain Pdp11
Cited by: 3
Author(s): Pedro Seoane, Silvana Tapia‐Paniagua, Rocí­o Bautista, Elena Alcaide, Consuelo Esteve, Eduardo Martínez‐Manzanares, M.C. Balebona, M. Gonzalo Claros, Miguel A. Moriñigo
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.3698

Genomic and functional analysis of<i>Romboutsia ilealis</i>CRIB^Treveals adaptation to the small intestine
Cited by: 74
Author(s): J. Gerritsen, Bastian Hornung, Bernadet Renckens, Sacha A. F. T. van Hijum, Vítor A. P. Martins dos Santos, Ger T. Rijkers, Peter J. Schaap, Willem M. de Vos, Hauke Smidt
Software Mentions: 2
Published: almost 9 years ago

10.3390/vetsci6010004

Heat Stress Modulates Brain Monoamines and Their Metabolites Production in Broiler Chickens Co-Infected with Clostridium perfringens Type A and Eimeria spp.
Cited by: 9
Author(s): Atílio Sersun Calefi, Juliana Garcia da Silva Fonseca, Catarina Augusta de Queiroz Nunes, Ana Paula Nascimento de Lima, W.M. Quinteiro-Filho, Jorge Camilo Flório, Adriano Zager, Antônio José Piantino Ferreira, João Palermo-Neto
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.10678

TET2 mutations in acute myeloid leukemia: a comprehensive study in patients of Sindh, Pakistan
Cited by: 4
Author(s): Abdul Rehman Shaikh, Ikram Uddin Ujjan, Muhammad Irfan, Arshi Naz, Tahir Shamsi, Muhammad Tariq Masood Khan, Muhammad Shakeel
Software Mentions: 2
Published: over 5 years ago

10.15252/msb.20167381

Diverse mechanisms of metaeffector activity in an intracellular bacterial pathogen, <i>Legionella pneumophila</i>
Cited by: 98
Author(s): Malene L. Urbanus, Andrew T. Quaile, P.J. Stogios, Mariya Morar, Chitong Rao, Rosa Di Leo, E. Evdokimova, Mandy Hiu Yi Lam, Christina Oatway, M.E. Cuff, J. Osipiuk, K. Michalska, B. Nocek, Mikko Taipale, Alexei Savchenko, Alexander W. Ensminger
Software Mentions: 2
Published: over 9 years ago

10.7717/peerj.7380

Construction and integrated analysis of crosstalking ceRNAs networks in laryngeal squamous cell carcinoma
Cited by: 18
Author(s): Yuehui Liu, Fan Ye
Software Mentions: 2
Published: about 7 years ago

10.7717/peerj.11386

Prokaryotic communities from a lava tube cave in La Palma Island (Spain) are involved in the biogeochemical cycle of major elements
Cited by: 18
Author(s): Jose Luis Gonzalez-Pimentel, Tamara Martin-Pozas, Valme Jurado, Ana Z. Miller, Ana Teresa Caldeira, Octavio Fernandez-Lorenzo, Sergio Sánchez‐Moral, Cesáreo Sáiz‐Jiménez
Software Mentions: 2
Published: over 5 years ago

10.14814/phy2.14171

The mitochondrial‐derived peptide MOTS‐c is a regulator of plasma metabolites and enhances insulin sensitivity
Cited by: 33
Author(s): Su-Jeong Kim, Brendan Miller, Hemal H. Mehta, Jialin Xiao, Junxiang Wan, Thalida Em Arpawong, Kelvin Yen, Pinchas Cohen
Software Mentions: 2
Published: about 7 years ago

10.1111/tpj.13601

Live‐cell <scp>CRISPR</scp> imaging in plants reveals dynamic telomere movements
Cited by: 101
Author(s): Steven Dreißig, Simon Schiml, Patrick Schindele, Oda Weiss, Twan Rutten, Veit Schubert, Evgeny Gladilin, Michael Florian Mette, Holger Puchta, Andreas Houben
Software Mentions: 2
Published: about 9 years ago

10.3390/plants10081720

Comparison of Drought and Heat Resistance Strategies among Six Populations of Solanum chilense and Two Cultivars of Solanum lycopersicum
Cited by: 9
Author(s): Rémi Blanchard-Gros, Servane Bigot, Juan-Pablo Martínez, Stanley Lutts, Gea Guerriero, Muriel Quinet
Software Mentions: 2
Published: about 5 years ago

10.3390/plants8120589

Secoiridoids Metabolism Response to Wounding in Common Centaury (Centaurium erythraea Rafn) Leaves
Cited by: 5
Author(s): Jelena Božunović, Marijana Škorić, Dragana Matekalo, Suzana Živković, Milan Dragićević, Neda Aničić, Biljana Filipović, Tijana Banjanac, Branislav Šiler, Danijela Mišić
Software Mentions: 2
Published: over 6 years ago

10.3390/plants9101370

Comparative Physiological and Proteomic Analysis Reveals Different Involvement of Proteins during Artificial Aging of Siberian Wildrye Seeds
Cited by: 5
Author(s): Lei Xiong, Wenhui Liu, Junlong Zhao, Minghong You, Chaohui Xiong, Yi Xiong, Yanli Xiong, Qingqing Yu, Shiqie Bai, Xiao Ma
Software Mentions: 2
Published: almost 6 years ago

10.3390/plants9030405

De novo Sequencing and Analysis of Salvia hispanica Tissue-Specific Transcriptome and Identification of Genes Involved in Terpenoid Biosynthesis
Cited by: 9
Author(s): James Wimberley, Joseph Cahill, Hagop S. Atamian
Software Mentions: 2
Published: over 6 years ago

10.3390/molecules23123151

Alteration of Intestinal Flora Stimulates Pulmonary microRNAs to Interfere with Host Antiviral Immunity in Influenza
Cited by: 15
Author(s): Ping Peng, Bin Yu, Yucong Shi, Li Deng, Huachong Xu, Sizhi Wu
Software Mentions: 2
Published: over 7 years ago

10.3390/molecules26092664

Microbiological Study in Petrol-Spiked Soil
Cited by: 9
Author(s): Agata Borowik, Jadwiga Wyszkowska, J. Kucharski
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pbio.1000494

Chromosomal Redistribution of Male-Biased Genes in Mammalian Evolution with Two Bursts of Gene Gain on the X Chromosome
Cited by: 175
Author(s): Yong E. Zhang, Maria D. Vibranovski, Patrick Landback, Gabriel Marais, Manyuan Long
Software Mentions: 2
Published: almost 16 years ago

10.1371/journal.pbio.2006519

Copper-dependent amino oxidase 3 governs selection of metabolic fuels in adipocytes
Cited by: 41
Author(s): Haojun Yang, Martina Ralle, Michael J. Wolfgang, Neha Dhawan, Jason L. Burkhead, Susana Rodriguez, Jack H. Kaplan, G. William Wong, Norman J. Haughey, Svetlana Lutsenko
Software Mentions: 2
Published: almost 8 years ago

10.7554/eLife.47678

Androgen-regulated transcription of ESRP2 drives alternative splicing patterns in prostate cancer
Cited by: 42
Author(s): Jennifer Munkley, Ling Li, Subha Krishnan, Gerald Hysenaj, Emma Scott, Caroline Dalgliesh, Htoo Zarni Oo, Teresa Maia, Kathleen Cheung, Ingrid Ehrmann, Karen E. Livermore, Hanna Zielińska, Oliver Thompson, Bridget Knight, Paul McCullagh, John McGrath, Malcolm Crundwell, Lorna W. Harries, Mads Daugaard, Simon Cockell, Nuno L. Barbosa‐Morais, Sebastian Oltean, David Elliott
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pbio.1001430

The Nuclear Effector of Wnt-Signaling, Tcf1, Functions as a T-Cell–Specific Tumor Suppressor for Development of Lymphomas
Cited by: 66
Author(s): Machteld M. Tiemessen, M.R.M. Baert, Tom Schonewille, Martijn H. Brugman, Farbod Famili, Daniela Salvatori, Jules P.P. Meijerink, Uğur Özbek, Hans Clevers, Jacques J. M. van Dongen, Frank J. T. Staal
Software Mentions: 2
Published: almost 14 years ago

10.1186/s13100-018-0109-4

Phylogeographic diversity and mosaicism of the Helicobacter pylori tfs integrative and conjugative elements
Cited by: 18
Author(s): Robin M. Delahay, Nicola Croxall, Amberley D. Stephens
Software Mentions: 2
Published: over 8 years ago

10.3390/microorganisms9020205

Taxonomic and Functional Diversity of Heterotrophic Protists (Cercozoa and Endomyxa) from Biological Soil Crusts
Cited by: 15
Author(s): Samira Khanipour Roshan, Kenneth Dumack, Michael Bonkowski, Peter Leinweber, Ulf Karsten, Karin Glaser
Software Mentions: 2
Published: over 5 years ago

10.3390/microorganisms9081546

Experimental Selection of Paromomycin Resistance in Leishmania donovani Amastigotes Induces Variable Genomic Polymorphisms
Cited by: 6
Author(s): Sarah Hendrickx, João Luís Reis-Cunha, Sarah Forrester, Daniel C. Jeffares, Guy Caljon
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-92205-z

Influence of prokaryotic microorganisms on initial soil formation along a glacier forefield on King George Island, maritime Antarctica
Cited by: 9
Author(s): Patryk Krauze, Dirk Wagner, Shuai Yang, Diogo Spinola, Peter Kühn
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pcbi.1004107

Protein Complexes in Bacteria
Cited by: 17
Author(s): J. Harry Caufield, Marco A Abreu, Christopher Wimble, Peter Uetz
Software Mentions: 2
Published: over 11 years ago

10.3390/microorganisms9071494

Analysis of Bacterial Communities on North Sea Macroalgae and Characterization of the Isolated Planctomycetes Adhaeretor mobilis gen. nov., sp. nov., Roseimaritima multifibrata sp. nov., Rosistilla ulvae sp. nov. and Rubripirellula lacrimiformis sp. nov.
Cited by: 34
Author(s): Sandra Wiegand, Patrick Rast, Nicolai Kallscheuer, Mareike Jogler, Anja Heuer, Christian Boedeker, Olga Jeske, Timo Kohn, John Vollmers, Anne‐Kristin Kaster, Christian Quast, Frank Oliver Glöckner, Manfred Rohde, Christian Jogler
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pgen.1004868

Genome-Wide Analysis of DNA Methylation Dynamics during Early Human Development
Cited by: 202
Author(s): Hiroaki Okae, Hayato Chiba, Hitoshi Hiura, Hirofumi Hamada, Akiko Satô, Takafumi Utsunomiya, Hiroyuki Kikuchi, Hiroaki Yoshida, Atsushi Tanaka, Mikita Suyama, Takahiro Arima
Software Mentions: 2
Published: over 11 years ago

10.3390/microorganisms8030318

Pesticides Decrease Bacterial Diversity and Abundance of Irrigated Rice Fields
Cited by: 17
Author(s): Michael Onwona-Kwakye, Kimberly Plants-Paris, K Kéita, Jessica Lee, Paul J. Van den Brink, Jonathan N. Hogarh, Charles Darkoh
Software Mentions: 2
Published: over 6 years ago

10.3390/microorganisms9061123

Pan-Genome Analysis Reveals Host-Specific Functional Divergences in Burkholderia gladioli
Cited by: 9
Author(s): Hyun‐Hee Lee, Jung–Wook Park, Hyejung Jung, Young-Su Seo
Software Mentions: 2
Published: over 5 years ago

10.3390/microorganisms8121880

Reconstructing Genomes of Carbon Monoxide Oxidisers in Volcanic Deposits Including Members of the Class Ktedonobacteria
Cited by: 8
Author(s): Marcela Hernández, Blanca Vera-Gargallo, Marcela Calabi-Floody, Gary M. King, Ralf Conrad, Christoph C. Tebbe
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pgen.1007258

The long-range interaction map of ribosomal DNA arrays
Cited by: 32
Author(s): Shui Yu, Bernardo Lemos
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pgen.1005835

Type One Protein Phosphatase 1 and Its Regulatory Protein Inhibitor 2 Negatively Regulate ABA Signaling
Cited by: 55
Author(s): Yueh-Ju Hou, Yingfang Zhu, Pengcheng Wang, Yanping Zhao, Shaojun Xie, Giorgia Batelli, Bangshing Wang, Cheng‐Guo Duan, Xingang Wang, Xing Lü, Mingguang Lei, Jun Yan, Xiaohong Zhu, Jian‐Kang Zhu
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pgen.1003549

The Gene Desert Mammary Carcinoma Susceptibility Locus Mcs1a Regulates Nr2f1 Modifying Mammary Epithelial Cell Differentiation and Proliferation
Cited by: 23
Author(s): Bart M. G. Smits, Jill D. Haag, Anna I. Rissman, Deepak Sharma, Ann Tran, Alexi A. Schoenborn, Rachael Baird, Dan S. Peiffer, David Q. Leinweber, Matthew J. Muelbl, Amanda L. Meilahn, Mark R. Eichelberg, Ning Leng, Christina Kendziorski, Maliyakal E. John, Patricia A. Powers, Caroline M. Alexander, Michael N. Gould
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pgen.1005423

SLIRP Regulates the Rate of Mitochondrial Protein Synthesis and Protects LRPPRC from Degradation
Cited by: 74
Author(s): Marie Lagouge, Arnaud Mourier, Hyun Ju Lee, Henrik Spåhr, Timothy Wai, Christian Kukat, Eduardo Silva Ramos, Elisa Motori, Jakob D. Busch, Stefan J. Siira, Elisabeth Kremmer, Aleksandra Filipovska, Nils‐Göran Larsson
Software Mentions: 2
Published: about 11 years ago

10.1038/s41598-021-93246-0

Exosomal hsa_circRNA_104484 and hsa_circRNA_104670 may serve as potential novel biomarkers and therapeutic targets for sepsis
Cited by: 21
Author(s): Chang Tian, Jiaying Liu, Xin Di, Shan Cong, Min Zhao, Ke Wang
Software Mentions: 2
Published: about 5 years ago

10.3390/microorganisms8081105

Staphylococcus saccharolyticus: An Overlooked Human Skin Colonizer
Cited by: 14
Author(s): Charlotte Marie Ahle, Kristian Stødkilde, Mastaneh Afshar, Anja Poehlein, Lesley A. Ogilvie, Bo Söderquist, Jennifer Hüpeden, Holger Brüggemann
Software Mentions: 2
Published: about 6 years ago

10.3390/microorganisms9081593

Glucosidase Inhibitors Screening in Microalgae and Cyanobacteria Isolated from the Amazon and Proteomic Analysis of Inhibitor Producing Synechococcus sp. GFB01
Cited by: 6
Author(s): Diana Gomes Gradíssimo, Vivian Cássia Oliveira da Silva, Luciana Pereira Xavier, Sidney Vasconcelos do Nascimento, Rafael Borges da Silva Valadares, Sílvia Maria Mathes Faustino, Maria Paula Cruz Schneider, Agenor Valadares Santos
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pntd.0003446

Conservation and Immunogenicity of Novel Antigens in Diverse Isolates of Enterotoxigenic Escherichia coli
Cited by: 60
Author(s): Qingwei Luo, Firdausi Qadri, Rita G. Kansal, David A. Rasko, Alaullah Sheikh, James M. Fleckenstein
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pntd.0004180

Changes in the Proteome of Langat-Infected Ixodes scapularis ISE6 Cells: Metabolic Pathways Associated with Flavivirus Infection
Cited by: 40
Author(s): Jeffrey M. Grabowski, Rushika Perera, Ali M. Roumani, Victoria Hedrick, Halina D. Inerowicz, Catherine A. Hill, Richard Kühn
Software Mentions: 2
Published: over 10 years ago

10.1172/jci.insight.150114

Lipin 1 modulates mRNA splicing during fasting adaptation in liver
Cited by: 4
Author(s): Huan Wang, Tracey W. Chan, Ajay A. Vashisht, Brian G. Drew, Anna C. Calkin, Thurl E. Harris, James A. Wohlschlegel, Xinshu Xiao, Karen Reue
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41419-021-03439-8

Akt kinase LANCL2 functions as a key driver in EGFR-mutant lung adenocarcinoma tumorigenesis
Cited by: 12
Author(s): Yu‐Qing Lou, Jianlin Xu, Yanwei Zhang, Wei Zhang, Xueyan Zhang, Ping Gu, Hua Zhong, Huimin Wang, Jun Lü, Baohui Han
Software Mentions: 1
Published: over 5 years ago

10.1093/aobpla/plw051

Reproductive traits affect the rescue of valuable and endangered multipurpose tropical trees
Cited by: 4
Author(s): Viviane C.O. Sinébou, Muriel Quinet, B. C. Ahohuendo, Anne‐Laure Jacquemart
Software Mentions: 1
Published: about 11 years ago

10.1074/jbc.M114.562389

The Nuclear Localization of γ-Tubulin Is Regulated by SadB-mediated Phosphorylation
Cited by: 23
Author(s): Greta Eklund, Stefan Lang, Johan Glindre, Åsa Ehlén, María Alvarado-Kristensson
Software Mentions: 1
Published: about 12 years ago

10.1038/s41419-020-03252-9

A cross-talk between epithelium and endothelium mediates human alveolar–capillary injury during SARS-CoV-2 infection
Cited by: 73
Author(s): Peng Wang, Rong-Hua Luo, Min Zhang, Yaqing Wang, Tian-Zhang Song, Tingting Tao, Zhongyu Li, Lin Jin, Hong-Yi Zheng, Wenwen Chen, Mengqian Zhao, Yong‐Tang Zheng, Jianhua Qin
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-015-1298-6

RNA Seq analysis of the Eimeria tenella gametocyte transcriptome reveals clues about the molecular basis for sexual reproduction and oocyst biogenesis
Cited by: 77
Author(s): Robert B. Walker, Philippa A Sharman, Catherine M. Miller, Christoph Lippuner, Michał Okoniewski, Ramon M. Eichenberger, Chandra Ramakrishnan, Fabien Brossier, Peter Deplazes, Adrian B. Hehl, Nicholas C. Smith
Software Mentions: 1
Published: over 11 years ago

10.1038/s41419-021-03755-z

Loss of CEP70 function affects acrosome biogenesis and flagella formation during spermiogenesis
Cited by: 8
Author(s): Qiang Liu, Qingping Guo, Wei Guo, Shuangshuang Song, Nan Wang, Xi Chen, Andi Sun, Liying Yan, Jie Qiao
Software Mentions: 1
Published: over 5 years ago

10.1038/cddis.2017.5

Nuclear Drosha enhances cell invasion via an EGFR-ERK1/2-MMP7 signaling pathway induced by dysregulated miRNA-622/197 and their targets LAMC2 and CD82 in gastric cancer
Cited by: 51
Author(s): Lixiang Xu, Yixuan Hou, Gang Tu, Yanlin Chen, Yan‐e Du, Hailong Zhang, Siyang Wen, Xi Tang, Jun Yin, Lang Lei, Kai Sun, Guanglun Yang, Xiaoli Tang, Manran Liu
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pbio.3000614

A G protein–coupled receptor mediates neuropeptide-induced oocyte maturation in the jellyfish Clytia
Cited by: 28
Author(s): Gonzalo Quiroga Artigas, Pascal Lapébie, Lucas Leclère, Philipp Bauknecht, Julie Uveira, Sandra Chevalier, Gáspár Jékely, Tsuyoshi Momose, Evelyn Houliston
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-15-230

RNA-seq analysis identifies an intricate regulatory network controlling cluster root development in white lupin
Cited by: 41
Author(s): David Secco, Huixia Shou, James Whelan, Oliver Berkowitz
Software Mentions: 1
Published: over 12 years ago

10.1038/s41419-021-04023-w

GRP78 determines glioblastoma sensitivity to UBA1 inhibition-induced UPR signaling and cell death
Cited by: 17
Author(s): Guanzheng Liu, Jiefeng Yu, Runqiu Wu, Lin Shi, Xu Zhang, Wanhong Zhang, Xiaorong Zhong, Yifeng Wang, Huan Li, Yang Shen, Changyong Wu, Rutong Yu, Mingshan Niu, Xuejiao Liu
Software Mentions: 1
Published: about 5 years ago

10.1038/s41419-019-1503-7

Direct reprogramming of epidermal cells toward sweat gland-like cells by defined factors
Cited by: 12
Author(s): Bin Yao, Jiangfan Xie, Nanbo Liu, Tian Hu, Wei Song, Sha Huang, Xiaobing Fu
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-021-86593-5

Exercise rapidly alters proteomes in mice following spinal cord demyelination
Cited by: 14
Author(s): Brian Lozinski, Luiz G. N. de Almeida, Claudia Silva, Yifei Dong, Dennis Brown, Sameeksha Chopra, V. Wee Yong, Antoine Dufour
Software Mentions: 1
Published: over 5 years ago