Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: gplots

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/gplots

Various R Programming Tools for Plotting Data
35 versions
Latest release: over 2 years ago
156 dependent packages
97,747 downloads last month

Papers Mentioning gplots 2,122

10.1038/s41598-020-62886-z
Transcriptome analysis reveals differentially expressed genes associated with high rates of egg production in chicken hypothalamic-pituitary-ovarian axis
Cited by: 35
Author(s): Suchismita Mishra, Binlong Chen, Qing Zhu, Zhongxian Xu, Chunyou Ning, Huadong Yin, Yan Wang, Xiaoling Zhao, Xiaolan Fan, Mingyao Yang, Deying Yang, Qingyong Ni, Yan Li, Mingwang Zhang, Diyan Li
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-63579-3
Hepatocyte-specific deletion of Pparα promotes NAFLD in the context of obesity
Cited by: 69
Author(s): Marion Régnier, Arnaud Polizzi, Sarra Smati, Céline Lukowicz, Anne Fougerat, Yannick Lippi, Edwin Fouché, Frédèric Lasserre, Claire Naylies, Colette Bétoulières, Valentin Barquissau, Etienne Mouisel, Justine Bertrand‐Michel, Aurélie Batut, Talal Al Saati, Cécile Canlet, Marie Tremblay-Franco, Sandrine Ellero‐Simatos, Dominique Langin, Catherine Postic, Walter Wahli, Nicolas Loiseau, Hervé Guillou, Alexandra Montagner
Software Mentions: 2
Published: over 4 years ago
10.1186/s12915-014-0086-0
A comprehensive evaluation of rodent malaria parasite genomes and gene expression
Cited by: 226
Author(s): Thomas D. Otto, Ulrike Böhme, Andrew P. Jackson, Martin Hunt, Blandine Franke-Fayard, Wieteke A. M. Hoeijmakers, Agnieszka A. Religa, Lauren Robertson, Mandy Sanders, Solabomi A. Ogun, Deirdre Cunningham, Annette Erhart, Oliver Billker, Shahid M. Khan, Hendrik G. Stunnenberg, Jean Langhorne, Anthony A. Holder, Andrew P. Waters, Chris Newbold, Arnab Pain, Matthew Berriman, Chris J. Janse
Software Mentions: 2
Published: about 10 years ago
10.1186/s12859-016-1404-z
ConEVA: a toolbox for comprehensive assessment of protein contacts
Cited by: 23
Author(s): Badri Adhikari, Jackson Nowotny, Debswapna Bhattacharya, Jie Hou, Jianlin Cheng
Software Mentions: 2
Published: almost 8 years ago
10.1038/s41598-020-66093-8
Aquaponics using a fish farm effluent shifts bacterial communities profile in halophytes rhizosphere and endosphere
Cited by: 7
Author(s): Vanessa Oliveira, Patrícia Martins, Bruna Marques, Daniel F. R. Cleary, Ana I. Lillebø, Ricardo Calado
Software Mentions: 2
Published: over 4 years ago
10.1186/s12859-015-0656-3
groHMM: a computational tool for identifying unannotated and cell type-specific transcription units from global run-on sequencing data
Cited by: 56
Author(s): Minho Chae, Charles G. Danko, W. Lee Kraus
Software Mentions: 2
Published: over 9 years ago
10.1186/s12859-017-1945-9
Explorative visual analytics on interval-based genomic data and their metadata
Cited by: 4
Author(s): Vahid Jalili, Matteo Matteucci, Marco Masseroli, Stefano Ceri
Software Mentions: 2
Published: almost 7 years ago
10.1186/s12859-017-1637-5
Drug repositioning for enzyme modulator based on human metabolite-likeness
Cited by: 10
Author(s): Yoon Hyeok Lee, Hojae Choi, Seongyong Park, Boah Lee, Gwan‐Su Yi
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-020-69418-9
iPSC-derived progenitor stromal cells provide new insights into aberrant musculoskeletal development and resistance to cancer in down syndrome
Cited by: 4
Author(s): Yekaterina Galat, Mariana Perepitchka, Irina Elcheva, Stephen Iannaccone, Philip M. Iannaccone, Vasiliy Galat
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-71822-0
Effects of time and temperature during melanging on the volatile profile of dark chocolate
Cited by: 4
Author(s): Caitlin Clark, Harmonie M. Bettenhausen, Adam L. Heuberger, Jeffrey P. Miller, Linxing Yao, Margaret E. Stone
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-71672-w
A carotenoid-deficient mutant of the plant-associated microbe Pantoea sp. YR343 displays an altered membrane proteome
Cited by: 6
Author(s): Sushmitha Vijaya Kumar, Paul E. Abraham, Gregory B. Hurst, Karuna Chourey, Amber N. Bible, Robert L. Hettich, Mitchel J. Doktycz, Jennifer L. Morrell‐Falvey
Software Mentions: 2
Published: about 4 years ago
10.7554/eLife.42989
Haplotypes spanning centromeric regions reveal persistence of large blocks of archaic DNA
Cited by: 46
Author(s): Sasha A. Langley, Karen H. Miga, Gary H. Karpen, Charles H. Langley
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-020-72078-4
Esterified carotenoids are synthesized in petals of carnation (Dianthus caryophyllus) and accumulate in differentiated chromoplasts
Cited by: 10
Author(s): Luna Iijima, Sanae Kishimoto, Akemi Ohmiya, Masafumi Yagi, Emi Okamoto, Taira Miyahara, Takashi Tsujimoto, Yoshihiro Ozeki, Nahoko Uchiyama, Takashi Hakamatsuka, Takanobu Kouno, Emilio Cano, Mitsuru Shimizu, Masahiro Nishihara
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-72172-7
Hepatic lipocalin 2 promotes liver fibrosis and portal hypertension
Cited by: 25
Author(s): Jiegen Chen, Josepmaria Argemí, Gemma Òdena, Mingjiang Xu, Yan Cai, Veronica Massey, Austin Parrish, Rajanikanth Vadigepalli, José Altamirano, Joaquín Cabezas, Pere Ginès, Juan Caballería, Natasha T. Snider, Pau Sancho‐Bru, Shizuo Akira, Ivan Rusyn, Bin Gao, R. Bataller
Software Mentions: 2
Published: about 4 years ago
10.5713/ajas.19.0221
Effects of the dietary digestible fiber-to-starch ratio on pellet quality, growth and cecal microbiota of Angora rabbits
Cited by: 3
Author(s): Yang Gao, Fei Zhao, Ting He, Jiantao Li, Dan Guo
Software Mentions: 2
Published: over 4 years ago
10.1186/s13075-017-1474-y
VISTA deficiency attenuates antibody-induced arthritis and alters macrophage gene expression in response to simulated immune complexes
Cited by: 31
Author(s): Sabrina Ceeraz, Susan K. Eszterhas, Petra Sergent, David A. Armstrong, Alix Ashare, Thomas Broughton, Li Wang, Dov A. Pechenick, Christopher M. Burns, Randolph J. Noelle, Matthew P. Vincenti, Roy A. Fava
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-020-73823-5
Circadian regulation of diel vertical migration (DVM) and metabolism in Antarctic krill Euphausia superba
Cited by: 5
Author(s): Fabio Piccolin, Lisa Pitzschler, Alberto Biscontin, So Kawaguchi, Bettina Meyer
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-75518-3
Establishment and characterisation of testicular cancer patient-derived xenograft models for preclinical evaluation of novel therapeutic strategies
Cited by: 3
Author(s): Gerda de Vries, Ximena Rosas-Plaza, Gert Jan Meersma, Vincent Christiaan Leeuwenburgh, Klaas Kok, Albert Suurmeijer, Marcel A.T.M. van Vugt, Jourik A. Gietema, Steven de Jong
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-78452-6
The potential role of Arhgef33 RhoGEF in foveal development in the zebra finch retina
Cited by: 7
Author(s): T Sugiyama, Haruka Yamamoto, Tetsuo Kon, Taro Chaya, Yoshihiro Omori, Yutaka Suzuki, Kentaro Abe, Dai Watanabe, Takahisa Furukawa
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-020-78351-w
Multi-omic approach provides insights into osmoregulation and osmoconformation of the crab Scylla paramamosain
Cited by: 18
Author(s): Jun Niu, Xue Lei Hu, Jack Chi-Ho Ip, Ka Yan, Yueh‐Bih Tang, Yaqin Wang, Jing Qin, Jian‐Wen Qiu, Ting‐Fung Chan, Ka Hou Chu
Software Mentions: 2
Published: almost 4 years ago
10.1186/ar4369
Proteomic profiling and functional characterization of early and late shoulder osteoarthritis
Cited by: 32
Author(s): John Paul Wanner, Roopashree Subbaiah, Yelenna Skomorovska-Prokvolit, Yousef Shishani, Éric Boilard, Sujatha Mohan, Robert J. Gillespie, Masaru Miyagi, Reuben Gobezie
Software Mentions: 2
Published: almost 12 years ago
10.1038/s41598-021-82538-0
Alterations in the gut bacterial microbiome in people with type 2 diabetes mellitus and diabetic retinopathy
Cited by: 83
Author(s): Taraprasad Das, Rajagopalaboopathi Jayasudha, SamaKalyana Chakravarthy, Gumpili Sai Prashanthi, Archana Bhargava, Mudit Tyagi, Padmaja Kumari Rani, Rajeev Reddy Pappuru, Savitri Sharma, Sisinthy Shivaji
Software Mentions: 2
Published: almost 4 years ago
10.1007/s00204-021-03008-0
Integration of transcriptome analysis with pathophysiological endpoints to evaluate cigarette smoke toxicity in an in vitro human airway tissue model
Cited by: 8
Author(s): Rui Xiong, Yue Wu, Qiangen Wu, Levan Muskhelishvili, Kelly J. Davis, Priya Tripathi, Ying Chen, Tao Chen, Matthew Bryant, Hans Rosenfeldt, Sheila M. Healy, Xuefei Cao
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-021-82801-4
Drosophila oocyte proteome composition covaries with female mating status
Cited by: 9
Author(s): Caitlin E. McDonough-Goldstein, Scott Pitnick, Steve Dorus
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-021-82640-3
The distribution of antibiotic resistance genes in chicken gut microbiota commensals
Cited by: 26
Author(s): Helena Juřicová, Jitka Matiasovicova, Tereza Kubasová, Darina Čejková, Ivan Rychlı́k
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-021-83380-0
The acute transcriptional responses to dietary methionine restriction are triggered by inhibition of ternary complex formation and linked to Erk1/2, mTOR, and ATF4
Cited by: 15
Author(s): Kirsten P. Stone, Sujoy Ghosh, Jean Paul Kovalik, Manda Orgeron, Desiree Wanders, Landon C. Sims, Thomas W. Gettys
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-021-83913-7
CIBERSORT analysis of TCGA and METABRIC identifies subgroups with better outcomes in triple negative breast cancer
Cited by: 47
Author(s): Kelly E. Craven, Yesim Gökmen‐Polar, Sunil Badve
Software Mentions: 2
Published: over 3 years ago
10.1128/AEM.00515-17
Microbiota in Exhaled Breath Condensate and the Lung
Cited by: 14
Author(s): Laura Glendinning, Steven H. Wright, Peter Tennant, Andrew C. Gill, David Collie, Gerry McLachlan
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-021-85230-5
Modeling preeclampsia using human induced pluripotent stem cells
Cited by: 25
Author(s): Mariko Horii, Robert Morey, Tony Bui, Ojeni Touma, Katelyn N. Nelson, Hee-Young Cho, Hannah Rishik, Louise C. Laurent, Mana M. Parast
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-021-86316-w
MiRNA expression profiling and emergence of new prognostic signature for oral squamous cell carcinoma
Cited by: 24
Author(s): Christo Rajan, Vikas Roshan, Imran Khan, V. G. Manasa, Iris Himal, K Jayasree, Shaji Thomas, Paturu Kondaiah, S. Kannan
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-021-86454-1
Longitudinal study of the scalp microbiome suggests coconut oil to enrich healthy scalp commensals
Cited by: 9
Author(s): Rituja Saxena, Parul Mittal, Cécile Clavaud, Darshan B. Dhakan, Nita Roy, Lionel Breton, Namita Misra, Vineet K. Sharma
Software Mentions: 2
Published: over 3 years ago
10.12688/wellcomeopenres.15452.1
Untargeted metabolomics to understand the basis of phenotypic differences in amphotericin B-resistant Leishmania parasites
Cited by: 10
Author(s): Andrew W. Pountain, Michael P. Barrett
Software Mentions: 2
Published: about 5 years ago
10.18632/aging.103783
Gene expression profiles during postnatal development of the liver and pancreas in giant pandas
Cited by: 3
Author(s): Jinnan Ma, Fang Shen, Lei Chen, Honglin Wu, Yan Huang, Zhenxin Fan, Rong Hou, Bisong Yue, Xiuyue Zhang
Software Mentions: 2
Published: over 4 years ago
10.3897/zookeys.540.9649
Characterisation of the chemical profiles of Brazilian and Andean morphotypes belonging to the Anastrepha fraterculus complex (Diptera, Tephritidae)
Cited by: 13
Author(s): Lucie Vaníčková, Radka Břízová, Antonio Pompeiano, Luana Lima Ferreira, Nathaly Costa de Aquino, Raphael de Farias Tavares, Laura D. Rodriguez, Adriana de Lima Mendonça, Nelson A. Canal, Ruth R. Do Nascimento
Software Mentions: 2
Published: almost 9 years ago
10.1186/s13071-019-3506-8
Anopheles aquasalis transcriptome reveals autophagic responses to Plasmodium vivax midgut invasion
Cited by: 7
Author(s): Rosa Amélia Gonçalves Santana, Maurício Oliveira, Iria Cabral, Rubens Celso Andrade Silva, Débora Raysa Teixeira de Sousa, L. S. Ferreira, Marcus Vinícius Guimarães Lacerda, Wuelton Marcelo Monteiro, Patrícia Abrantes, Maria das Graças Vale Barbosa Guerra, Henrique Silveira
Software Mentions: 2
Published: over 5 years ago
10.1186/s13071-018-3007-1
Hints on T cell responses in a fish-parasite model: Enteromyxum leei induces differential expression of T cell signature molecules depending on the organ and the infection status
Cited by: 24
Author(s): M. Carla Piazzon, Itziar Estensoro, Josep Àlvar Calduch-Giner, R. del Pozo, Amparo Picard‐Sánchez, Jaume Pérez‐Sánchez, Ariadna Sitjà‐Bobadilla
Software Mentions: 2
Published: over 6 years ago
10.1186/s13071-016-1642-y
CAP protein superfamily members in Toxocara canis
Cited by: 6
Author(s): Andreas J. Stroehlein, Neil D. Young, Ross S. Hall, Pasi K. Korhonen, Andreas Hofmann, Paul W. Sternberg, Abdul Jabbar, Robin B. Gasser
Software Mentions: 2
Published: over 8 years ago
10.1186/s13071-019-3405-z
Interpreting mosquito feeding patterns in Australia through an ecological lens: an analysis of blood meal studies
Cited by: 18
Author(s): Eloise Stephenson, Amanda K. Murphy, Cassie C. Jansen, Alison J. Peel, Hamish McCallum
Software Mentions: 2
Published: over 5 years ago
10.3390/pathogens6040045
The Use of Hyperimmune Chicken Reference Sera Is Not Appropriate for the Validation of Influenza Pseudotype Neutralization Assays
Cited by: 0
Author(s): Francesca Ferrara, Eleonora Molesti, Simon D. Scott, Giovanni Cattoli, Nigel Temperton
Software Mentions: 2
Published: about 7 years ago
10.3390/v11090847
Rice Dwarf Virus Small RNA Profiles in Rice and Leafhopper Reveal Distinct Patterns in Cross-Kingdom Hosts
Cited by: 1
Author(s): Yu Wang, Rui Qiao, Chunhong Wei, Yang Li
Software Mentions: 2
Published: about 5 years ago
10.7717/peerj.10053
Silicon flow from root to shoot in pepper: a comprehensive in silico analysis reveals a potential linkage between gene expression and hormone signaling that stimulates plant growth and metabolism
Cited by: 9
Author(s): Fernando Carlos Gómez-Meriño, Libia Iris Trejo-Téllez, Atonaltzin García-Jiménez, Hugo Fernando Escobar-Sepúlveda, Sara Monzerrat Ramírez-Olvera
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-021-88904-2
A new approach to radon temporal correction factor based on active environmental monitoring devices
Cited by: 6
Author(s): Tiberius Dicu, Bety-Denissa Burghele, Marius Lucian Botoș, Alexandra Cucoş, Gabriel Dobrei, Ştefan Florică, Ș Grecu, Alexandru Lupulescu, Istvan Pap, Kinga Szacsvai, Ancuta Radu Tenter, Carlos Sàinz
Software Mentions: 2
Published: over 3 years ago
10.7717/peerj.9054
Intra-lake response of Arcellinida (testate lobose amoebae) to gold mining-derived arsenic contamination in northern Canada: Implications for environmental monitoring
Cited by: 5
Author(s): Nawaf A. Nasser, R. Timothy Patterson, Jennifer M. Galloway, Hendrik Falck
Software Mentions: 2
Published: over 4 years ago
10.7717/peerj.1597
Comparative morphology of the mouthparts of the megadiverse South African monkey beetles (Scarabaeidae: Hopliini): feeding adaptations and guild structure
Cited by: 20
Author(s): Florian Karolyi, Teresa Hansal, Harald W. Krenn, Jonathan F. Colville
Software Mentions: 2
Published: almost 9 years ago
10.7717/peerj.8101
Co-expression analysis and ceRNA network reveal eight novel potential lncRNA biomarkers in hepatocellular carcinoma
Cited by: 6
Author(s): Renchao Zou, Zhitian Shi, Shufeng Xiao, Ke Yang, Haoran Tang, Taihu Wu, Zhitang Guo, Ni Fan, Sanqi An, Lin Wang
Software Mentions: 2
Published: almost 5 years ago
10.1080/21505594.2020.1750123
Malate enhances survival of zebrafish against <i>Vibrio alginolyticus</i> infection in the same manner as taurine
Cited by: 35
Author(s): Meisongzhu Yang, Di Xu, Dai-xiao Yang, Lü Li, Xuan‐xian Peng, Zhuang‐Gui Chen, Hui Li
Software Mentions: 2
Published: over 4 years ago
10.3390/vetsci6010004
Heat Stress Modulates Brain Monoamines and Their Metabolites Production in Broiler Chickens Co-Infected with Clostridium perfringens Type A and Eimeria spp.
Cited by: 9
Author(s): Atílio Sersun Calefi, Juliana Garcia da Silva Fonseca, Catarina Augusta de Queiroz Nunes, Ana Paula Nascimento de Lima, W.M. Quinteiro-Filho, Jorge Camilo Flório, Adriano Zager, Antônio José Piantino Ferreira, João Palermo-Neto
Software Mentions: 2
Published: almost 6 years ago
10.7717/peerj.8176
Systematic evaluation of the gut microbiome of swamp eel (<i>Monopterus albus</i>) by 16S rRNA gene sequencing
Cited by: 6
Author(s): Xuan Chen, Shouguo Fang, Lili Wei, Qiuyan Zhong
Software Mentions: 2
Published: almost 5 years ago
10.7717/peerj.6526
TarSynFlow, a workflow for bacterial genome comparisons that revealed genes putatively involved in the probiotic character of<i>Shewanella putrefaciens</i>strain Pdp11
Cited by: 3
Author(s): Pedro Seoane, Silvana Tapia‐Paniagua, Rocí­o Bautista, Elena Alcaide, Consuelo Esteve, Eduardo Martínez‐Manzanares, M.C. Balebona, M. Gonzalo Claros, Miguel A. Moriñigo
Software Mentions: 2
Published: over 5 years ago
10.7717/peerj.3698
Genomic and functional analysis of<i>Romboutsia ilealis</i>CRIB<sup>T</sup>reveals adaptation to the small intestine
Cited by: 74
Author(s): J. Gerritsen, Bastian Hornung, Bernadet Renckens, Sacha A. F. T. van Hijum, Vítor A. P. Martins dos Santos, Ger T. Rijkers, Peter J. Schaap, Willem M. de Vos, Hauke Smidt
Software Mentions: 2
Published: about 7 years ago
10.7717/peerj.10678
TET2 mutations in acute myeloid leukemia: a comprehensive study in patients of Sindh, Pakistan
Cited by: 4
Author(s): Abdul Rehman Shaikh, Ikram Uddin Ujjan, Muhammad Irfan, Arshi Naz, Tahir Shamsi, Muhammad Tariq Masood Khan, Muhammad Shakeel
Software Mentions: 2
Published: almost 4 years ago
10.15252/msb.20167381
Diverse mechanisms of metaeffector activity in an intracellular bacterial pathogen, <i>Legionella pneumophila</i>
Cited by: 98
Author(s): Malene L. Urbanus, Andrew T. Quaile, P.J. Stogios, Mariya Morar, Chitong Rao, Rosa Di Leo, E. Evdokimova, Mandy Hiu Yi Lam, Christina Oatway, M.E. Cuff, J. Osipiuk, K. Michalska, B. Nocek, Mikko Taipale, Alexei Savchenko, Alexander W. Ensminger
Software Mentions: 2
Published: almost 8 years ago
10.7717/peerj.7380
Construction and integrated analysis of crosstalking ceRNAs networks in laryngeal squamous cell carcinoma
Cited by: 18
Author(s): Yuehui Liu, Fan Ye
Software Mentions: 2
Published: over 5 years ago
10.7717/peerj.11386
Prokaryotic communities from a lava tube cave in La Palma Island (Spain) are involved in the biogeochemical cycle of major elements
Cited by: 18
Author(s): Jose Luis Gonzalez-Pimentel, Tamara Martin-Pozas, Valme Jurado, Ana Z. Miller, Ana Teresa Caldeira, Octavio Fernandez-Lorenzo, Sergio Sánchez‐Moral, Cesáreo Sáiz‐Jiménez
Software Mentions: 2
Published: over 3 years ago
10.14814/phy2.14171
The mitochondrial‐derived peptide MOTS‐c is a regulator of plasma metabolites and enhances insulin sensitivity
Cited by: 33
Author(s): Su-Jeong Kim, Brendan Miller, Hemal H. Mehta, Jialin Xiao, Junxiang Wan, Thalida Em Arpawong, Kelvin Yen, Pinchas Cohen
Software Mentions: 2
Published: over 5 years ago
10.3390/molecules23123151
Alteration of Intestinal Flora Stimulates Pulmonary microRNAs to Interfere with Host Antiviral Immunity in Influenza
Cited by: 15
Author(s): Ping Peng, Bin Yu, Yucong Shi, Li Deng, Huachong Xu, Sizhi Wu
Software Mentions: 2
Published: almost 6 years ago
10.1111/tpj.13601
Live‐cell <scp>CRISPR</scp> imaging in plants reveals dynamic telomere movements
Cited by: 101
Author(s): Steven Dreißig, Simon Schiml, Patrick Schindele, Oda Weiss, Twan Rutten, Veit Schubert, Evgeny Gladilin, Michael Florian Mette, Holger Puchta, Andreas Houben
Software Mentions: 2
Published: over 7 years ago
10.3390/plants10081720
Comparison of Drought and Heat Resistance Strategies among Six Populations of Solanum chilense and Two Cultivars of Solanum lycopersicum
Cited by: 9
Author(s): Rémi Blanchard-Gros, Servane Bigot, Juan-Pablo Martínez, Stanley Lutts, Gea Guerriero, Muriel Quinet
Software Mentions: 2
Published: over 3 years ago
10.3390/plants8120589
Secoiridoids Metabolism Response to Wounding in Common Centaury (Centaurium erythraea Rafn) Leaves
Cited by: 5
Author(s): Jelena Božunović, Marijana Škorić, Dragana Matekalo, Suzana Živković, Milan Dragićević, Neda Aničić, Biljana Filipović, Tijana Banjanac, Branislav Šiler, Danijela Mišić
Software Mentions: 2
Published: almost 5 years ago
10.3390/molecules26092664
Microbiological Study in Petrol-Spiked Soil
Cited by: 9
Author(s): Agata Borowik, Jadwiga Wyszkowska, J. Kucharski
Software Mentions: 2
Published: over 3 years ago
10.3390/plants9101370
Comparative Physiological and Proteomic Analysis Reveals Different Involvement of Proteins during Artificial Aging of Siberian Wildrye Seeds
Cited by: 5
Author(s): Lei Xiong, Wenhui Liu, Junlong Zhao, Minghong You, Chaohui Xiong, Yi Xiong, Yanli Xiong, Qingqing Yu, Shiqie Bai, Xiao Ma
Software Mentions: 2
Published: about 4 years ago
10.3390/plants9030405
De novo Sequencing and Analysis of Salvia hispanica Tissue-Specific Transcriptome and Identification of Genes Involved in Terpenoid Biosynthesis
Cited by: 9
Author(s): James Wimberley, Joseph Cahill, Hagop S. Atamian
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pbio.1000494
Chromosomal Redistribution of Male-Biased Genes in Mammalian Evolution with Two Bursts of Gene Gain on the X Chromosome
Cited by: 175
Author(s): Yong E. Zhang, Maria D. Vibranovski, Patrick Landback, Gabriel Marais, Manyuan Long
Software Mentions: 2
Published: about 14 years ago
10.1371/journal.pbio.2006519
Copper-dependent amino oxidase 3 governs selection of metabolic fuels in adipocytes
Cited by: 41
Author(s): Haojun Yang, Martina Ralle, Michael J. Wolfgang, Neha Dhawan, Jason L. Burkhead, Susana Rodriguez, Jack H. Kaplan, G. William Wong, Norman J. Haughey, Svetlana Lutsenko
Software Mentions: 2
Published: about 6 years ago
10.7554/eLife.47678
Androgen-regulated transcription of ESRP2 drives alternative splicing patterns in prostate cancer
Cited by: 42
Author(s): Jennifer Munkley, Ling Li, Subha Krishnan, Gerald Hysenaj, Emma Scott, Caroline Dalgliesh, Htoo Zarni Oo, Teresa Maia, Kathleen Cheung, Ingrid Ehrmann, Karen E. Livermore, Hanna Zielińska, Oliver Thompson, Bridget Knight, Paul McCullagh, John McGrath, Malcolm Crundwell, Lorna W. Harries, Mads Daugaard, Simon Cockell, Nuno L. Barbosa‐Morais, Sebastian Oltean, David Elliott
Software Mentions: 2
Published: about 5 years ago
10.1186/s13100-018-0109-4
Phylogeographic diversity and mosaicism of the Helicobacter pylori tfs integrative and conjugative elements
Cited by: 18
Author(s): Robin M. Delahay, Nicola Croxall, Amberley D. Stephens
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pbio.1001430
The Nuclear Effector of Wnt-Signaling, Tcf1, Functions as a T-Cell–Specific Tumor Suppressor for Development of Lymphomas
Cited by: 66
Author(s): Machteld M. Tiemessen, M.R.M. Baert, Tom Schonewille, Martijn H. Brugman, Farbod Famili, Daniela Salvatori, Jules P.P. Meijerink, Uğur Özbek, Hans Clevers, Jacques J. M. van Dongen, Frank J. T. Staal
Software Mentions: 2
Published: about 12 years ago
10.3390/microorganisms9020205
Taxonomic and Functional Diversity of Heterotrophic Protists (Cercozoa and Endomyxa) from Biological Soil Crusts
Cited by: 15
Author(s): Samira Khanipour Roshan, Kenneth Dumack, Michael Bonkowski, Peter Leinweber, Ulf Karsten, Karin Glaser
Software Mentions: 2
Published: almost 4 years ago
10.3390/microorganisms9081546
Experimental Selection of Paromomycin Resistance in Leishmania donovani Amastigotes Induces Variable Genomic Polymorphisms
Cited by: 6
Author(s): Sarah Hendrickx, João Luís Reis-Cunha, Sarah Forrester, Daniel C. Jeffares, Guy Caljon
Software Mentions: 2
Published: over 3 years ago
10.3390/microorganisms9071494
Analysis of Bacterial Communities on North Sea Macroalgae and Characterization of the Isolated Planctomycetes Adhaeretor mobilis gen. nov., sp. nov., Roseimaritima multifibrata sp. nov., Rosistilla ulvae sp. nov. and Rubripirellula lacrimiformis sp. nov.
Cited by: 34
Author(s): Sandra Wiegand, Patrick Rast, Nicolai Kallscheuer, Mareike Jogler, Anja Heuer, Christian Boedeker, Olga Jeske, Timo Kohn, John Vollmers, Anne‐Kristin Kaster, Christian Quast, Frank Oliver Glöckner, Manfred Rohde, Christian Jogler
Software Mentions: 2
Published: over 3 years ago
10.3390/microorganisms8030318
Pesticides Decrease Bacterial Diversity and Abundance of Irrigated Rice Fields
Cited by: 17
Author(s): Michael Onwona-Kwakye, Kimberly Plants-Paris, K Kéita, Jessica Lee, Paul J. Van den Brink, Jonathan N. Hogarh, Charles Darkoh
Software Mentions: 2
Published: over 4 years ago
10.3390/microorganisms9061123
Pan-Genome Analysis Reveals Host-Specific Functional Divergences in Burkholderia gladioli
Cited by: 9
Author(s): Hyun‐Hee Lee, Jung–Wook Park, Hyejung Jung, Young-Su Seo
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-021-92205-z
Influence of prokaryotic microorganisms on initial soil formation along a glacier forefield on King George Island, maritime Antarctica
Cited by: 9
Author(s): Patryk Krauze, Dirk Wagner, Shuai Yang, Diogo Spinola, Peter Kühn
Software Mentions: 2
Published: over 3 years ago
10.3390/microorganisms8121880
Reconstructing Genomes of Carbon Monoxide Oxidisers in Volcanic Deposits Including Members of the Class Ktedonobacteria
Cited by: 8
Author(s): Marcela Hernández, Blanca Vera-Gargallo, Marcela Calabi-Floody, Gary M. King, Ralf Conrad, Christoph C. Tebbe
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pcbi.1004107
Protein Complexes in Bacteria
Cited by: 17
Author(s): J. Harry Caufield, Marco A Abreu, Christopher Wimble, Peter Uetz
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pgen.1004868
Genome-Wide Analysis of DNA Methylation Dynamics during Early Human Development
Cited by: 202
Author(s): Hiroaki Okae, Hayato Chiba, Hitoshi Hiura, Hirofumi Hamada, Akiko Satô, Takafumi Utsunomiya, Hiroyuki Kikuchi, Hiroaki Yoshida, Atsushi Tanaka, Mikita Suyama, Takahiro Arima
Software Mentions: 2
Published: almost 10 years ago
10.3390/microorganisms8081105
Staphylococcus saccharolyticus: An Overlooked Human Skin Colonizer
Cited by: 14
Author(s): Charlotte Marie Ahle, Kristian Stødkilde, Mastaneh Afshar, Anja Poehlein, Lesley A. Ogilvie, Bo Söderquist, Jennifer Hüpeden, Holger Brüggemann
Software Mentions: 2
Published: over 4 years ago
10.3390/microorganisms9081593
Glucosidase Inhibitors Screening in Microalgae and Cyanobacteria Isolated from the Amazon and Proteomic Analysis of Inhibitor Producing Synechococcus sp. GFB01
Cited by: 6
Author(s): Diana Gomes Gradíssimo, Vivian Cássia Oliveira da Silva, Luciana Pereira Xavier, Sidney Vasconcelos do Nascimento, Rafael Borges da Silva Valadares, Sílvia Maria Mathes Faustino, Maria Paula Cruz Schneider, Agenor Valadares Santos
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pgen.1007258
The long-range interaction map of ribosomal DNA arrays
Cited by: 32
Author(s): Shui Yu, Bernardo Lemos
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pgen.1005835
Type One Protein Phosphatase 1 and Its Regulatory Protein Inhibitor 2 Negatively Regulate ABA Signaling
Cited by: 55
Author(s): Yueh-Ju Hou, Yingfang Zhu, Pengcheng Wang, Yanping Zhao, Shaojun Xie, Giorgia Batelli, Bangshing Wang, Cheng‐Guo Duan, Xingang Wang, Xing Lü, Mingguang Lei, Jun Yan, Xiaohong Zhu, Jian‐Kang Zhu
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pgen.1003549
The Gene Desert Mammary Carcinoma Susceptibility Locus Mcs1a Regulates Nr2f1 Modifying Mammary Epithelial Cell Differentiation and Proliferation
Cited by: 23
Author(s): Bart M. G. Smits, Jill D. Haag, Anna I. Rissman, Deepak Sharma, Ann Tran, Alexi A. Schoenborn, Rachael Baird, Dan S. Peiffer, David Q. Leinweber, Matthew J. Muelbl, Amanda L. Meilahn, Mark R. Eichelberg, Ning Leng, Christina Kendziorski, Maliyakal E. John, Patricia A. Powers, Caroline M. Alexander, Michael N. Gould
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pgen.1005423
SLIRP Regulates the Rate of Mitochondrial Protein Synthesis and Protects LRPPRC from Degradation
Cited by: 74
Author(s): Marie Lagouge, Arnaud Mourier, Hyun Ju Lee, Henrik Spåhr, Timothy Wai, Christian Kukat, Eduardo Silva Ramos, Elisa Motori, Jakob D. Busch, Stefan J. Siira, Elisabeth Kremmer, Aleksandra Filipovska, Nils‐Göran Larsson
Software Mentions: 2
Published: over 9 years ago
10.1038/s41598-021-93246-0
Exosomal hsa_circRNA_104484 and hsa_circRNA_104670 may serve as potential novel biomarkers and therapeutic targets for sepsis
Cited by: 21
Author(s): Chang Tian, Jiaying Liu, Xin Di, Shan Cong, Min Zhao, Ke Wang
Software Mentions: 2
Published: over 3 years ago
10.1186/s40168-018-0475-7
Amniotic fluid from healthy term pregnancies does not harbor a detectable microbial community
Cited by: 110
Author(s): Efrem S. Lim, Cynthia Rodríguez, Lori R. Holtz
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pntd.0003446
Conservation and Immunogenicity of Novel Antigens in Diverse Isolates of Enterotoxigenic Escherichia coli
Cited by: 60
Author(s): Qingwei Luo, Firdausi Qadri, Rita G. Kansal, David A. Rasko, Alaullah Sheikh, James M. Fleckenstein
Software Mentions: 2
Published: almost 10 years ago
10.1371/journal.pntd.0004180
Changes in the Proteome of Langat-Infected Ixodes scapularis ISE6 Cells: Metabolic Pathways Associated with Flavivirus Infection
Cited by: 40
Author(s): Jeffrey M. Grabowski, Rushika Perera, Ali M. Roumani, Victoria Hedrick, Halina D. Inerowicz, Catherine A. Hill, Richard Kühn
Software Mentions: 2
Published: almost 9 years ago
10.1186/s40168-017-0364-5
Comparing microbiotas in the upper aerodigestive and lower respiratory tracts of lambs
Cited by: 20
Author(s): Laura Glendinning, David Collie, Steven H. Wright, Kenny Rutherford, Gerry McLachlan
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-021-85356-6
Wnt5A modulates integrin expression in a receptor-dependent manner in ovarian cancer cells
Cited by: 6
Author(s): Vajihe Azimian-Zavareh, Zeinab Dehghani-Ghobadi, Marzieh Ebrahimi, Kian Mirzazadeh, Irina Nazarenko, Ghamartaj Hossein
Software Mentions: 1
Published: over 3 years ago
10.1186/1471-2164-15-230
RNA-seq analysis identifies an intricate regulatory network controlling cluster root development in white lupin
Cited by: 41
Author(s): David Secco, Huixia Shou, James Whelan, Oliver Berkowitz
Software Mentions: 1
Published: over 10 years ago
10.1016/j.cell.2018.01.004
NK Cells Stimulate Recruitment of cDC1 into the Tumor Microenvironment Promoting Cancer Immune Control
Cited by: 1,039
Author(s): Jan Böttcher, Eduardo Bonavita, Probir Chakravarty, Hanna Blees, Mar Cabeza-Cabrerizo, Stefano Sammicheli, Neil C. Rogers, Erik Sahai, Santiago Zelenay, Caetano Reis e Sousa
Software Mentions: 1
Published: almost 7 years ago
10.3390/cancers13184531
Attenuated Chromosome Oscillation as a Cause of Chromosomal Instability in Cancer Cells
Cited by: 2
Author(s): Kenji Iemura, Yujiro Yoshizaki, Kinue Kuniyasu, Kozo Tanaka
Software Mentions: 1
Published: about 3 years ago
10.1093/aobpla/plw051
Reproductive traits affect the rescue of valuable and endangered multipurpose tropical trees
Cited by: 4
Author(s): Viviane C.O. Sinébou, Muriel Quinet, B. C. Ahohuendo, Anne‐Laure Jacquemart
Software Mentions: 1
Published: over 9 years ago
10.1111/jcmm.12819
Micro <scp>RNA</scp> expression profile of human periodontal ligament cells under the influence of <i>Porphyromonas gingivalis</i> <scp>LPS</scp>
Cited by: 37
Author(s): Anqing Du, Sen Zhao, Lingyun Wan, TianTao Liu, Zaoxia Peng, Ziyu Zhou, Zhengyu Liao, Huan Fang
Software Mentions: 1
Published: over 8 years ago
10.3390/cancers13092096
Immune Monitoring during Therapy Reveals Activitory and Regulatory Immune Responses in High-Risk Neuroblastoma
Cited by: 7
Author(s): Celina L. Szanto, Annelisa M. Cornel, Sara M. Tamminga, Eveline M. Delemarre, Coco de Koning, Denise A. M. H. van den Beemt, Ester Dünnebach, Michelle L. Tas, Miranda P. Dierselhuis, Godelieve A.M. Tytgat, Max M. van Noesel, Kathelijne C.J.M. Kraal, Jaap-Jan Boelens, Alwin D. R. Huitema, Stefan Nierkens
Software Mentions: 1
Published: over 3 years ago
10.1186/s12864-017-4425-8
Global identification, structural analysis and expression characterization of cytochrome P450 monooxygenase superfamily in rice
Cited by: 54
Author(s): Kaifa Wei, Huiqin Chen
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0206400
A multi-gene expression profile panel for predicting liver metastasis: An algorithmic approach
Cited by: 4
Author(s): Kanisha Shah, Shanaya Patel, Sheefa Mirza, Rakesh Rawal
Software Mentions: 1
Published: about 6 years ago
10.1186/s13068-019-1556-y
Myceliophthora thermophila Xyr1 is predominantly involved in xylan degradation and xylose catabolism
Cited by: 10
Author(s): Ana Carolina dos Santos Gomes, Daniel Luciano Falkoski, Evy Battaglia, Mao Peng, Maíra Nicolau de Almeida, Nancy Linares, Jean-Paul Meijnen, Jaap Visser, Ronald P. de Vries
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-021-86593-5
Exercise rapidly alters proteomes in mice following spinal cord demyelination
Cited by: 14
Author(s): Brian Lozinski, Luiz G. N. de Almeida, Claudia Silva, Yifei Dong, Dennis Brown, Sameeksha Chopra, V. Wee Yong, Antoine Dufour
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pntd.0005365
Plasmodium vivax gametocytes in the bone marrow of an acute malaria patient and changes in the erythroid miRNA profile
Cited by: 63
Author(s): Bàrbara Baró, Katrien Deroost, Tainá Raiol, Marcelo Augusto Mota Brito, Anne Cristine Gomes de Almeida, Armando de Menezes-Neto, Erick Frota Gomes Figueiredo, Aline Alencar, Rodrigo de Souza Leitão, Fernando Val, Wuelton Marcelo Monteiro, Anna Oliveira, Maria del Pilar Armengol, Carmen Fernández-Becerra, Marcus Vinícius Guimarães Lacerda, Hernando A. del Portillo
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-021-86548-w
Systemic alterations play a dominant role in epigenetic predisposition to breast cancer in offspring of obese fathers and is transmitted to a second generation
Cited by: 1
Author(s): Camile Castilho Fontelles, Raquel Santana da Cruz, Alexandra K. Gonsiewski, Ersilia Barin, Volkan Tekmen, Lü Jin, M. Idalia Cruz, Olivier Loudig, Anni Wärri, Sônia de Assis
Software Mentions: 1
Published: over 3 years ago