cran: gplots | Projects | Ecosyste.ms: Papers

10.1371/journal.ppat.1007420

Differential induction of interferon stimulated genes between type I and type III interferons is independent of interferon receptor abundance
Cited by: 89
Author(s): Kalliopi Pervolaraki, Soheil Rastgou Talemi, Dorothee Albrecht, Felix Bormann, Connor Bamford, Juan L. Mendoza, K. Christopher García, John McLauchlan, Thomas Höfer, Megan L. Stanifer, Steeve Boulant
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.ppat.1007990

Caspase-11-dependent IL-1α release boosts Th17 immunity against Paracoccidioides brasiliensis
Cited by: 18
Author(s): Natália Ketelut-Carneiro, Camila Oliveira Silva Souza, Luciana Benevides, Luiz Gustavo Gardinassi, Maria Cláudia Silva, Lucas Tavares, Dario S. Zamboni, João Silva
Software Mentions: 2
Published: about 7 years ago

10.1007/s00394-012-0391-8

Characterization of microbial metabolism of Syrah grape products in an in vitro colon model using targeted and non-targeted analytical approaches
Cited by: 58
Author(s): Anna‐Marja Aura, Ismo Mattila, Tuulia Hyötyläinen, Peddinti Gopalacharyulu, Véronique Cheynier, Jean‐Marc Souquet, Magali Bes, Carine Le Bourvellec, Sylvain Guyot, Matej Orešič
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.ppat.1009149

Predicting the animal hosts of coronaviruses from compositional biases of spike protein and whole genome sequences through machine learning
Cited by: 14
Author(s): Liam Brierley, Anna Fowler
Software Mentions: 2
Published: over 5 years ago

10.3390/diagnostics10070453

COVID-19 Serological Tests: How Well Do They Actually Perform?
Cited by: 104
Author(s): Abdi Ghaffari, Robyn Meurant, Ali Ardakani
Software Mentions: 2
Published: over 6 years ago

10.1098/rspb.2018.2929

Genomic signatures of G-protein-coupled receptor expansions reveal functional transitions in the evolution of cephalopod signal transduction
Cited by: 9
Author(s): Elena A. Ritschard, Robert R. Fitak, Oleg Simakov, Sönke Johnsen
Software Mentions: 2
Published: over 7 years ago

10.3389/fimmu.2018.02870

Theiler's Virus-Mediated Immunopathology in the CNS and Heart: Roles of Organ-Specific Cytokine and Lymphatic Responses
Cited by: 15
Author(s): Seiichi Omura, Eiichiro Kawai, Fumitaka Sato, Nicholas E. Martinez, Alireza Minagar, Mahmoud Al‐Kofahi, J. Winny Yun, Urška Cvek, Marjan Trutschl, J. Steven Alexander, Ikuo Tsunoda
Software Mentions: 2
Published: almost 8 years ago

10.1007/s13238-018-0572-1

Dgcr8 deletion in the primitive heart uncovered novel microRNA regulating the balance of cardiac-vascular gene program
Cited by: 10
Author(s): Xi Chen, Lin Wang, Rujin Huang, Hui Qiu, Peizhe Wang, Da‐Ren Wu, Yonglin Zhu, Ming Jia, Yangming Wang, Jianbin Wang, Jie Na
Software Mentions: 2
Published: about 8 years ago

10.3390/proteomes4030021

Understanding the Remodelling of Cell Walls during Brachypodium distachyon Grain Development through a Sub-Cellular Quantitative Proteomic Approach
Cited by: 15
Author(s): Mathilde Francin-Allami, Virginie Lollier, Marija Pavlović, Hélène San Clemente, Hélène Rogniaux, Élisabeth Jamet, Fabienne Guillon, Colette Larré
Software Mentions: 2
Published: over 10 years ago

10.1186/s13072-018-0194-0

Guidelines for whole genome bisulphite sequencing of intact and FFPET DNA on the Illumina HiSeq X Ten
Cited by: 34
Author(s): Shalima S. Nair, Phuc-Loi Luu, Wenjia Qu, Madhavi P. Maddugoda, Lily I. Huschtscha, Roger R. Reddel, Georgia Chenevix-Trench, Martina Toso, James G. Kench, Lisa G. Horvath, Vanessa M. Hayes, Phillip D. Stricker, Timothy P. Hughes, Deborah L. White, John E.J. Rasko, Justin Wong, Susan J. Clark
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.23203

Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells
Cited by: 171
Author(s): Sebastian Pott
Software Mentions: 2
Published: over 9 years ago

10.3389/fimmu.2020.02112

Urinary Proteomics Identifying Novel Biomarkers for the Diagnosis of Adult-Onset Still’s Disease
Cited by: 14
Author(s): Yue Sun, Fan Wang, Zhuochao Zhou, Jialin Teng, Yutong Su, Huihui Chi, Zhihong Wang, Qiongyi Hu, Jieshuang Jia, Tingting Liu, Honglei Liu, Xiaobing Cheng, Hui Shi, Yun Long Tan, Chengde Yang, Junna Ye
Software Mentions: 2
Published: about 6 years ago

10.1089/rej.2018.2077

The Plasma NAD+Metabolome Is Dysregulated in “Normal” Aging
Cited by: 114
Author(s): James P. Clement, Matthew Wai Kin Wong, Anne Poljak, Perminder S. Sachdev, Nady Braidy
Software Mentions: 2
Published: over 7 years ago

10.3389/fimmu.2019.02230

Antibody Responses Against Plasmodium vivax TRAP Recombinant and Synthetic Antigens in Naturally Exposed Individuals From the Brazilian Amazon
Cited by: 6
Author(s): Ada da Silva Matos, Rodrigo Nunes Rodrigues-da-Silva, Isabela Ferreira Soares, Bárbara de Oliveira Baptista, Rodrigo Medeiros de Souza, Lana Bitencourt-Chaves, Paulo Renato Rivas Totino, Juan Camilo Sánchez‐Arcila, Cláudio Tadeu Daniel-Ribeiro, César López-Camacho, Arturo Reyes-Sandoval, Lilian Rose Pratt-Riccio, Josué da Costa Lima-Junior
Software Mentions: 2
Published: about 7 years ago

10.3389/fimmu.2020.01709

Toxoplasma gondii Dense Granule Proteins 7, 14, and 15 Are Involved in Modification and Control of the Immune Response Mediated via NF-κB Pathway
Cited by: 21
Author(s): Fumie Ihara, Ragab M. Fereig, Yuu Himori, Kyohko Kameyama, Kosuke Umeda, Sadao Tanaka, Rina Ikeda, Masahiro Yamamoto, Yoshifumi Nishikawa
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.42989

Haplotypes spanning centromeric regions reveal persistence of large blocks of archaic DNA
Cited by: 46
Author(s): Sasha A. Langley, Karen H. Miga, Gary H. Karpen, Charles H. Langley
Software Mentions: 2
Published: over 7 years ago

10.1186/s12931-018-0861-5

Transforming growth factor beta1 targets estrogen receptor signaling in bronchial epithelial cells
Cited by: 29
Author(s): L. Cody Smith, Santiago Moreno, Lauren Robertson, Sarah Robinson, Kristal Gant, Andrew J. Bryant, Tara Sabo‐Attwood
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-021-86316-w

MiRNA expression profiling and emergence of new prognostic signature for oral squamous cell carcinoma
Cited by: 24
Author(s): Christo Rajan, Vikas Roshan, Imran Khan, V. G. Manasa, Iris Himal, K Jayasree, Shaji Thomas, Paturu Kondaiah, S. Kannan
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-86454-1

Longitudinal study of the scalp microbiome suggests coconut oil to enrich healthy scalp commensals
Cited by: 9
Author(s): Rituja Saxena, Parul Mittal, Cécile Clavaud, Darshan B. Dhakan, Nita Roy, Lionel Breton, Namita Misra, Vineet K. Sharma
Software Mentions: 2
Published: over 5 years ago

10.1080/15592294.2019.1649527

Non-alcoholic fatty liver disease (NAFLD) is associated with dynamic changes in DNA hydroxymethylation
Cited by: 29
Author(s): Marcus J. Lyall, John P. Thomson, Jessy Cartier, Raffaele Ottaviano, Timothy J. Kendall, Richard R. Meehan, Amanda J. Drake
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-021-88904-2

A new approach to radon temporal correction factor based on active environmental monitoring devices
Cited by: 6
Author(s): Tiberius Dicu, Bety-Denissa Burghele, Marius Lucian Botoș, Alexandra Cucoş, Gabriel Dobrei, Ştefan Florică, Ș Grecu, Alexandru Lupulescu, Istvan Pap, Kinga Szacsvai, Ancuta Radu Tenter, Carlos Sàinz
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2019.01965

Systemic Inflammation and the Increased Risk of Inflamm-Aging and Age-Associated Diseases in People Living With HIV on Long Term Suppressive Antiretroviral Therapy
Cited by: 65
Author(s): Hemalatha Babu, Anoop T. Ambikan, Erin E. Gabriel, Sara Svensson Akusjärvi, Alangudi Natarajan Palaniappan, Vijila Sundaraj, Naveen Reddy Mupanni, Maike Sperk, Narayanaiah Cheedarla, Sridhar Ramaswamy, Srikanth Tripathy, Piotr Nowak, Luke Elizabeth Hanna, Ujjwal Neogi
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-021-92205-z

Influence of prokaryotic microorganisms on initial soil formation along a glacier forefield on King George Island, maritime Antarctica
Cited by: 9
Author(s): Patryk Krauze, Dirk Wagner, Shuai Yang, Diogo Spinola, Peter Kühn
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2020.00045

Identification of Core Gene Expression Signature and Key Pathways in Colorectal Cancer
Cited by: 45
Author(s): Xiang Ding, Houyu Duan, Haitao Luo
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-021-93246-0

Exosomal hsa_circRNA_104484 and hsa_circRNA_104670 may serve as potential novel biomarkers and therapeutic targets for sepsis
Cited by: 21
Author(s): Chang Tian, Jiaying Liu, Xin Di, Shan Cong, Min Zhao, Ke Wang
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2020.612256

Regulatory Dynamics of Cell Differentiation Revealed by True Time Series From Multinucleate Single Cells
Cited by: 2
Author(s): Anna Pretschner, Sophie Pabel, Markus Haas, Monika Heiner, Wolfgang Marwan
Software Mentions: 2
Published: almost 6 years ago

10.3389/fgene.2021.690990

Identification and Validation of Potential Candidate Genes of Colorectal Cancer in Response to Fusobacterium nucleatum Infection
Cited by: 0
Author(s): Jiangguo Zhang, Zhimo Wang, Hong Liu, Guojun Li
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2019.01292

Data-Mining Approach on Transcriptomics and Methylomics Placental Analysis Highlights Genes in Fetal Growth Restriction
Cited by: 13
Author(s): Floris Chabrun, Noémie Huetz, Xavier Dieu, Guillaume Rousseau, Guillaume Bouzillé, Juan Manuel Chao de la Barca, Vincent Procaccio, Guy Lenaers, Odile Blanchet, Guillaume Legendre, Delphine Mirebeau‐Prunier, Marc Cuggia, Philippe Guardiola, Pascal Reynier, Géraldine Gascoin
Software Mentions: 2
Published: almost 7 years ago

10.3389/fendo.2018.00535

Differential Expression of Keratinocyte-Derived Extracellular Vesicle Mirnas Discriminate Exosomes From Apoptotic Bodies and Microvesicles
Cited by: 28
Author(s): Uyen Thi Trang Than, Dominic Guanzon, James A. Broadbent, David I. Leavesley, Carlos Salomón, Tony J. Parker
Software Mentions: 2
Published: about 8 years ago

10.3389/fendo.2019.00821

TMT Based Proteomic Analysis of Human Follicular Fluid From Overweight/Obese and Normal-Weight Patients With Polycystic Ovary Syndrome
Cited by: 23
Author(s): Xinyi Zhang, Xiaoyan Xu, Pingping Li, Feifei Zhou, Lin Kong, Jiahui Qiu, Zhengwei Yuan, Jichun Tan
Software Mentions: 2
Published: almost 7 years ago

10.1186/s13287-018-0864-7

The presence of human mesenchymal stem cells of renal origin in amniotic fluid increases with gestational time
Cited by: 18
Author(s): Shaifur Rahman, Lucas‐Sebastian Spitzhorn, Wasco Wruck, Carsten Hagenbeck, Percy Balan, Nina Graffmann, Martina Bohndorf, Audrey Ncube, Pascale V. Guillot, Tanja Fehm, James Adjaye
Software Mentions: 2
Published: over 8 years ago

10.1186/s13287-020-01706-7

Mass spectrometric analysis of the in vitro secretome from equine bone marrow-derived mesenchymal stromal cells to assess the effect of chondrogenic differentiation on response to interleukin-1β treatment
Cited by: 19
Author(s): Louise Bundgaard, Allan Stensballe, Kirstine Juul Elbæk, Lise C. Berg
Software Mentions: 2
Published: over 6 years ago

10.1155/2016/2480298

Long-Term Oocyte-Like Cell Development in Cultures Derived from Neonatal Marmoset Monkey Ovary
Cited by: 9
Author(s): Bentolhoda Fereydouni, Gabriela Salinas-Riester, Michael Heistermann, Ralf Dressel, Lucia Lewerich, Charis Drummer, Rüdiger Behr
Software Mentions: 2
Published: almost 11 years ago

10.1002/ece3.5838

Egg laying rather than host quality or host feeding experience drives habitat estimation in the parasitic waspNasonia vitripennis
Cited by: 2
Author(s): Mareike Koppik, Andra Thiel, Thomas S. Hoffmeister
Software Mentions: 2
Published: almost 7 years ago

10.7150/thno.32982

Noninvasive application of mesenchymal stem cell spheres derived from hESC accelerates wound healing in a CXCL12-CXCR4 axis-dependent manner
Cited by: 31
Author(s): Xiaoyan Wang, Bin Jiang, Huiyan Sun, Dejin Zheng, Zhenwu Zhang, Yan Li, Enqin Li, Yaojiong Wu, Ren‐He Xu
Software Mentions: 2
Published: almost 8 years ago

10.7150/thno.43895

Proteomic analysis reveals ginsenoside Rb1 attenuates myocardial ischemia/reperfusion injury through inhibiting ROS production from mitochondrial complex I
Cited by: 71
Author(s): Lujing Jiang, Yin X, Yahui Chen, Yan Chen, Wei Jiang, Hao Zheng, Feng-Qing Huang, Baolin Liu, Wei Zhou, Lian‐Wen Qi, Jia Li
Software Mentions: 2
Published: almost 6 years ago

10.1038/tp.2016.65

Physical activity delays hippocampal neurodegeneration and rescues memory deficits in an Alzheimer disease mouse model
Cited by: 53
Author(s): Melanie Hüttenrauch, Andreas Brauß, Anastasiia Kurdakova, Henning Borgers, Florian Klinker, David Liebetanz, Gabriela Salinas-Riester, Jens Wiltfang, Hans-Wolfgang Klafki, Oliver Wirths
Software Mentions: 2
Published: over 10 years ago

10.1128/mBio.01307-18

An Introduced Crop Plant Is Driving Diversification of the Virulent Bacterial Pathogen Erwinia tracheiphila
Cited by: 25
Author(s): Lori R. Shapiro, Joseph N. Paulson, Brian J. Arnold, Erin D. Scully, Olga Zhaxybayeva, Naomi E. Pierce, Jorge Rocha, Vanja Klepac‐Ceraj, Kristina M. Holton, Roberto Kolter
Software Mentions: 2
Published: about 8 years ago

10.3389/fncel.2020.00056

Experience-Dependent Changes in Myelin Basic Protein Expression in Adult Visual and Somatosensory Cortex
Cited by: 6
Author(s): Kathryn Murphy, Steven J. Mancini, Katherine Clayworth, Keon Arbabi, Simon Beshara
Software Mentions: 2
Published: over 6 years ago

10.3389/fncel.2015.00294

Fetal microglial phenotype in vitro carries memory of prior in vivo exposure to inflammation
Cited by: 43
Author(s): Mingju Cao, Marina Farrel Cortês, Craig S. Moore, Soo-Yuen Leong, Lucien Daniel Durosier, Patrick Burns, Gilles Fecteau, André Desrochers, Roland N. Auer, Luis B. Barreiro, Jack P. Antel, Martin G. Frasch
Software Mentions: 2
Published: over 11 years ago

10.7554/eLife.47678

Androgen-regulated transcription of ESRP2 drives alternative splicing patterns in prostate cancer
Cited by: 42
Author(s): Jennifer Munkley, Ling Li, Subha Krishnan, Gerald Hysenaj, Emma Scott, Caroline Dalgliesh, Htoo Zarni Oo, Teresa Maia, Kathleen Cheung, Ingrid Ehrmann, Karen E. Livermore, Hanna Zielińska, Oliver Thompson, Bridget Knight, Paul McCullagh, John McGrath, Malcolm Crundwell, Lorna W. Harries, Mads Daugaard, Simon Cockell, Nuno L. Barbosa‐Morais, Sebastian Oltean, David Elliott
Software Mentions: 2
Published: about 7 years ago

10.3389/fcimb.2017.00076

Different Phenotypes of Mature Biofilm in Flavobacterium psychrophilum Share a Potential for Virulence That Differs from Planktonic State
Cited by: 30
Author(s): Héctor A. Levipan, Rubén Avendaño‐Herrera
Software Mentions: 2
Published: over 9 years ago

10.1128/mSphere.00761-19

Dominance of Gas-Eating, Biofilm-Forming Methylobacterium Species in the Evaporator Cores of Automobile Air-Conditioning Systems
Cited by: 2
Author(s): Chulwoo Park, Hye Su Jung, Tae Sun Park, Che Ok Jeon, Woojun Park
Software Mentions: 2
Published: over 6 years ago

10.1128/mSystems.00052-16

Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir
Cited by: 186
Author(s): Aaron M. Walsh, Fiona Crispie, Kieran N. Kilcawley, Órla O’Sullivan, Maurice G. O’Sullivan, Marcus J. Claesson, Paul D. Cotter
Software Mentions: 2
Published: about 10 years ago

10.1128/mSystems.00741-19

Long-Term Phytoremediation of Coastal Saline Soil Reveals Plant Species-Specific Patterns of Microbial Community Recruitment
Cited by: 45
Author(s): Xiaogai Wang, Run‐Cang Sun, Yinping Tian, Kai Guo, Hang Sun, Xiaojing Liu, Haiyan Chu, Binbin Liu
Software Mentions: 2
Published: over 6 years ago

10.1101/2020.07.30.20165241

Temporal and Spatial Heterogeneity of Host Response to SARS-CoV-2 Pulmonary Infection
Cited by: 16
Author(s): Niyati Desai, Azfar Neyaz, Annamária Szabolcs, Angela R. Shih, Jonathan Chen, Vishal Thapar, Linda T. Nieman, Alexander Solovyov, Arnav Mehta, David Lieb, Anupriya S. Kulkarni, Christopher Jaicks, Christopher J. Pinto, Dejan Juric, Ivan Chebib, Robert B. Colvin, Arthur Y. Kim, R. J. Monroe, Sarah Warren, Patrick Danaher, Jason Reeves, Junsong Gong, Erroll H. Rueckert, Benjamin Greenbaum, Nir Hacohen, Stephen M. Lagana, Miguel N. Rivera, Lynette M. Sholl, James R. Stone, David T. Ting
Software Mentions: 2
Published: over 6 years ago

10.15252/emmm.201809571

Cobalt protoporphyrin <scp>IX</scp> increases endogenous G‐ <scp>CSF</scp> and mobilizes <scp>HSC</scp> and granulocytes to the blood
Cited by: 12
Author(s): Agata Szade, Krzysztof Szade, Witold Nowak, Karolina Bukowska-Strakovà, Lucie Muchová, Monika Gońka, Monika Żukowska, Maciej Cieśla, Neli Kachamakova‐Trojanowska, Marzena Rams-Baron, A. Ratuszna, Józef Dulak, Alicja Józkowicz
Software Mentions: 2
Published: about 7 years ago

10.3389/fcell.2020.624985

Integrative Proteomic and Phosphoproteomic Analyses of Granulosa Cells During Follicular Atresia in Porcine
Cited by: 4
Author(s): Feng Yang, Qiang Liu, Yanhong Chen, Huizhen Ye, Han Wang, Shenming Zeng
Software Mentions: 2
Published: almost 6 years ago

10.3389/fnbeh.2021.706079

Sex-Specific Social Behavior and Amygdala Proteomic Deficits in Foxp2+/− Mutant Mice
Cited by: 5
Author(s): María Jesús Presentación Herrero, Li Wang, David Hernandez‐Pineda, Payal Banerjee, Heidi Y. Matos, Meredith Goodrich, Aswini K. Panigrahi, Nathan A. Smith, Joshua G. Corbin
Software Mentions: 2
Published: over 5 years ago

10.1084/jem.20180801

Ezh2 inhibition in Kras-driven lung cancer amplifies inflammation and associated vulnerabilities
Cited by: 27
Author(s): Michela Serresi, Bjørn Siteur, Danielle Hulsman, Matthias Jürgen Schmitt, Cor Lieftink, Ben Morris, Matteo Cesaroni, Natalie Proost, Roderick L. Beijersbergen, Maarten van Lohuizen, Gaetano Gargiulo
Software Mentions: 2
Published: almost 8 years ago

10.3390/jof7010011

Botrytis cinerea Transcriptome during the Infection Process of the Bryophyte Physcomitrium patens and Angiosperms
Cited by: 11
Author(s): Guillermo Reboledo, Astrid Agorio, Lucía Vignale, Ramón Alberto Batista-García, Inés Ponce de León
Software Mentions: 2
Published: almost 6 years ago

10.3390/jof7030210

The Abundance and Diversity of Fungi in a Hypersaline Microbial Mat from Guerrero Negro, Baja California, México
Cited by: 9
Author(s): Paula Maza-Márquez, Michael D. Lee, Brad M. Bebout
Software Mentions: 2
Published: over 5 years ago

10.3390/jof7090724

Molecular Insights into Defense Responses of Vietnamese Maize Varieties to Fusarium verticillioides Isolates
Cited by: 9
Author(s): Trang Minh Tran, Maarten Ameye, Sofie Landschoot, Frank Devlieghere, Sarah De Saeger, Mia Eeckhout, Kris Audenaert
Software Mentions: 2
Published: about 5 years ago

10.1155/2016/2895303

Differential Gene Expression during Larval Metamorphic Development in the Pearl Oyster,Pinctada fucata, Based on Transcriptome Analysis
Cited by: 8
Author(s): Haimei Li, Bo Zhang, Guiju Huang, Bao-Suo Liu, Sigang Fan, Dongling Zhang, Dahui Yu
Software Mentions: 2
Published: almost 11 years ago

10.1155/2019/9520642

DREB Genes from Common Bean (Phaseolus vulgaris L.) Show Broad to Specific Abiotic Stress Responses and Distinct Levels of Nucleotide Diversity
Cited by: 16
Author(s): Enéas Ricardo Konzen, Gustavo Henrique Recchia, Fernanda Cassieri, Danielle Gregório Gomes Caldas, Jorge C. Berny Mier y Teran, Paul Gepts, Siu Mui Tsai
Software Mentions: 2
Published: over 7 years ago

10.15252/emmm.201404430

Comprehensive establishment and characterization of orthoxenograft mouse models of malignant peripheral nerve sheath tumors for personalized medicine
Cited by: 36
Author(s): Joan Castellsagué, Bernat Gel, Juana Fernández‐Rodríguez, Roger Llatjós, Ignacio Blanco, Yolanda Benavente, Diana Pérez-Sidelnikova, Javier García-del Muro, J. Viñals, August Vidal, Rafael Valdés-Mas, Ernest Terribas, Adriana López-Dóriga, Miguel Ángel Pujana, Gabriel Capellá, Xosé S. Puente, Eduard Serra, Alberto Villanueva, Conxi Lázaro
Software Mentions: 2
Published: over 11 years ago

10.7150/ijms.35984

Protein chip and bioinformatic analyses of differentially expressed proteins involved in the effect of hydrogen-rich water on myocardial ischemia-reperfusion injury
Cited by: 6
Author(s): Liangtong Li, Tongtong Liu, Xiangzi Li, Xuanchen Liu, Li Liu, Shaochun Li, Zhilin Li, Yujuan Zhou, Fulin Liu
Software Mentions: 2
Published: almost 8 years ago

10.15252/emmm.201505495

Therapeutic potential of targeting micro <scp>RNA</scp> ‐10b in established intracranial glioblastoma: first steps toward the clinic
Cited by: 113
Author(s): Nadiya M. Teplyuk, Erik J. Uhlmann, Galina Gabriely, Natalia Volfovsky, Yan Wang, Jian Teng, Priya Karmali, Eric G. Marcusson, Merlene Peter, Athul Mohan, Yevgenya Kraytsberg, Ron Cialic, E. Antonio Chiocca, Jakub Godlewski, Bakhos A. Tannous, Anna M. Krichevsky
Software Mentions: 2
Published: almost 11 years ago

10.7554/eLife.38883

Hair follicle epidermal stem cells define a niche for tactile sensation
Cited by: 34
Author(s): Chun‐Chia Cheng, Ko Tsutsui, Toru Taguchi, Noriko Sanzen, Asako Nakagawa, Kisa Kakiguchi, Shigenobu Yonemura, Chiharu Tanegashima, Sean D. Keeley, Hiroshi Kanazawa, Yasuhide Furuta, Yasuko Tomono, Fiona M. Watt, Hironobu Fujiwara
Software Mentions: 2
Published: about 8 years ago

10.1093/femsec/fiy217

Evidence for diversifying selection of genetic regions of encoding putative collagen-like host-adhesive fibers inPasteuria penetrans
Cited by: 6
Author(s): Arohi Srivastava, Sharad Mohan, Tim H. Mauchline, Keith Davies
Software Mentions: 2
Published: about 8 years ago

10.3390/insects11090593

Bacteria Belonging to Pseudomonas typographi sp. nov. from the Bark Beetle Ips typographus Have Genomic Potential to Aid in the Host Ecology
Cited by: 23
Author(s): Ezequiel Peral-Aranega, Zaki Saati‐Santamaría, Miroslav Kolařík, Raúl Rivas, Paula García‐Fraile
Software Mentions: 2
Published: about 6 years ago

10.1002/hbm.24964

Impact of b‐value on estimates of apparent fibre density
Cited by: 58
Author(s): Sila Genc, Chantal M. W. Tax, Erika P. Raven, Maxime Chamberland, Greg D. Parker, Derek K. Jones
Software Mentions: 2
Published: over 6 years ago

10.1111/tan.14127

The <scp>HLA</scp> diversity of the Anthony Nolan register
Cited by: 10
Author(s): Gayle Leen, Jeremy E. Stein, James T. Robinson, H. Maldonado Torres, S. G. E. Marsh
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.48788

Lmx1b is required at multiple stages to build expansive serotonergic axon architectures
Cited by: 30
Author(s): Lauren J. Donovan, W. Clay Spencer, Meagan M. Kitt, Brent A Eastman, Katherine J Lobur, Kexin Jiao, Jerry Silver, Evan S. Deneris
Software Mentions: 2
Published: over 7 years ago

10.1186/s13073-017-0418-0

Genetic pleiotropy between age-related macular degeneration and 16 complex diseases and traits
Cited by: 50
Author(s): Felix Graßmann, Christina Kiel, Martina E. Zimmermann, Florian Kronenberg, Veronika Grassmann, Klaus Stark, Iris M. Heid, Bernhard H. F. Weber
Software Mentions: 2
Published: over 9 years ago

10.1186/s40104-020-00511-9

Time-restricted feeding downregulates cholesterol biosynthesis program via RORγ-mediated chromatin modification in porcine liver organoids
Cited by: 10
Author(s): Kexin Zhang, Hao Li, Zimeng Xin, Yanwei Li, Xiaolong Wang, Yun Hu, Haoyu Liu, Demin Cai
Software Mentions: 2
Published: about 6 years ago

10.1186/s13073-015-0169-8

A bioinformatic framework for immune repertoire diversity profiling enables detection of immunological status
Cited by: 146
Author(s): Victor Greiff, Pooja Bhat, Skylar C. Cook, Ulrike Menzel, Wenjing Kang, Sai T. Reddy
Software Mentions: 2
Published: over 11 years ago

10.3390/ijerph16101805

The Effects of Pavement Types on Soil Bacterial Communities across Different Depths
Cited by: 8
Author(s): Weiwei Yu, Yinhong Hu, Bowen Cui, Yuanyuan Chen, Xiaoke Wang
Software Mentions: 2
Published: over 7 years ago

10.1016/j.exer.2019.107901

Features of ectopic lymphoid-like structures in human uveitis
Cited by: 9
Author(s): Simon Epps, Natalie Coplin, Philip J Luthert, Andrew D. Dick, Sarah E. Coupland, Lindsay B. Nicholson
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijerph17197137

Markers Specific to Bacteroides fragilis Group Bacteria as Indicators of Anthropogenic Pollution of Surface Waters
Cited by: 6
Author(s): Sebastian Niestępski, Monika Harnisz, Ewa Korzeniewska, Adriana Osińska
Software Mentions: 2
Published: about 6 years ago

10.3390/ijerph17197081

Assessing the Beneficial Effects of the Immunomodulatory Glycan LNFPIII on Gut Microbiota and Health in a Mouse Model of Gulf War Illness
Cited by: 11
Author(s): Ryan S. Mote, Jessica M. Carpenter, Rachel L. Dockman, Andrew J. Steinberger, Garret Suen, Thomas Norberg, Donald A. Harn, John J. Wagner, Nikolay M. Filipov
Software Mentions: 2
Published: about 6 years ago

10.3390/jcdd8040045

Transcriptome Analysis Reveals Differential Gene Expression between the Closing Ductus Arteriosus and the Patent Ductus Arteriosus in Humans
Cited by: 5
Author(s): Junichi Saito, Tomoyuki Kojima, Shota Tanifuji, Yuko Kato, Shuntaro Oka, Yukio Ichikawa, Etsuko Miyagi, Tsuyoshi Tachibana, Toshihide Asou, Utako Yokoyama
Software Mentions: 2
Published: over 5 years ago

10.3390/ijerph18020563

The Prevalence of Virulent and Multidrug-Resistant Enterococci in River Water and in Treated and Untreated Municipal and Hospital Wastewater
Cited by: 17
Author(s): Anna Gotkowska-Płachta
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13059-016-1032-y

Full-length autonomous transposable elements are preferentially targeted by expression-dependent forms of RNA-directed DNA methylation
Cited by: 108
Author(s): Kaushik Panda, Lexiang Ji, Drexel A. Neumann, Josquin Daron, Robert J. Schmitz, R. Keith Slotkin
Software Mentions: 2
Published: over 10 years ago

10.1242/jcs.245043

Automated 3D light-sheet screening with high spatiotemporal resolution reveals mitotic phenotypes
Cited by: 20
Author(s): Björn Eismann, Teresa G Krieger, Jürgen Beneke, Ruben Bulkescher, Lukas Adam, Holger Erfle, Carl Herrmann, Roland Eils, Christian Conrad
Software Mentions: 2
Published: almost 7 years ago

10.1155/2020/4832189

Linking Complement C3 and B Cells in Nasal Polyposis
Cited by: 3
Author(s): Ulrike Werner, Axel Künstner, Maren Drenckhan, Ralph Pries, Karl‐Ludwig Bruchhage, Hauke Busch, Claus Bachert, Barbara Wollenberg
Software Mentions: 2
Published: over 6 years ago

10.3390/jcm8122029

A Novel Saliva-Based miRNA Signature for Colorectal Cancer Diagnosis
Cited by: 45
Author(s): Óscar Rapado‐González, Blanca Majem, Ana Álvarez-Castro, Roberto Díaz‐Peña, Alicia Abalo, Leticia Suárez‐Cabrera, Antonio Gil‐Moreno, Anna Santamaría, Rafael López‐López, Laura Muinelo‐Romay, María Mercedes Suárez‐Cunqueiro
Software Mentions: 2
Published: almost 7 years ago

10.3390/jcm10050931

SARS-CoV-2 Is a Culprit for Some, but Not All Acute Ischemic Strokes: A Report from the Multinational COVID-19 Stroke Study Group
Cited by: 16
Author(s): Shima Shahjouei, Michelle Anyaehie, Eric Koza, Georgios Tsivgoulis, Soheil Naderi, Ashkan Mowla, Venkatesh Avula, Alireza Vafaei Sadr, Durgesh Chaudhary, Ghasem Farahmand, Christoph J. Griessenauer, Mahmoud Reza Azarpazhooh, Debdipto Misra, Li Jiang, Vida Abedi, Ramin Zand
Software Mentions: 2
Published: over 5 years ago

10.1186/s13550-015-0137-8

Gene expression signature in mouse thyroid tissue after 131I and 211At exposure
Cited by: 13
Author(s): Nils Rudqvist, Johan Spetz, Emil Schüler, Britta Langen, Toshima Z. Parris, Khalil Helou, Eva Forssell-Aronsson
Software Mentions: 2
Published: about 11 years ago

10.1186/gb-2010-11-3-r35

Conserved developmental transcriptomes in evolutionarily divergent species
Cited by: 162
Author(s): Anup Parikh, Edward Roshan Miranda, Mariko Katoh-Kurasawa, Danny Fuller, Gregor Rot, Lan Žagar, Tomaž Curk, Richard Sucgang, Rui Chen, Blaž Zupan, William F. Loomis, Adam Kuspa, Gad Shaulsky
Software Mentions: 2
Published: almost 17 years ago

10.1038/onc.2016.164

MicroRNA-101 regulated transcriptional modulator SUB1 plays a role in prostate cancer
Cited by: 56
Author(s): Balabhadrapatruni V. S. K. Chakravarthi, Moloy T. Goswami, Satya S. Pathi, Alyncia D. Robinson, Marcin Cieślik, Darshan S. Chandrashekar, Sumit Agarwal, Javed Siddiqui, Stephanie Daignault, Shannon Carskadon, Xiaojun Jing, Arul M. Chinnaiyan, Lakshmi P. Kunju, Nallasivam Palanisamy, Sooryanarayana Varambally
Software Mentions: 2
Published: over 10 years ago

10.1093/jxb/erw179

Tissue-specific laser microdissection of theBrassica napusfuniculus improves gene discovery and spatial identification of biological processes
Cited by: 19
Author(s): Ainsley Chan, Deirdre Khan, Ian J. Girard, Michael G. Becker, Jenna L. Millar, David Sytnik, Mark F. Belmonte
Software Mentions: 2
Published: over 10 years ago

10.1093/jxb/eraa021

Moderate water stress in rice induces rhizosheath formation associated with abscisic acid and auxin responses
Cited by: 30
Author(s): Yingjiao Zhang, Huan Du, Yao Gui, Feiyun Xu, Jianping Liu, Jianhua Zhang, Weifeng Xu
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41388-021-01732-6

Proteasome 26S subunit, non-ATPases 1 (PSMD1) and 3 (PSMD3), play an oncogenic role in chronic myeloid leukemia by stabilizing nuclear factor-kappa B
Cited by: 20
Author(s): Alfonso E. Bencomo‐Alvarez, Andres J. Rubio, Idaly M. Olivas, Mayra A. Gonzalez, Rebecca Ellwood, Carme Ripoll Fiol, Christopher A. Eide, Joshua J. Lara, Christian Barreto‐Vargas, Luis F Jave-Suárez, Georgios Nteliopoulos, Alistair Reid, Dragana Milojković, Brian J. Druker, Jane F. Apperley, Jamshid S. Khorashad, Anna M. Eiring
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1004079

Exposure-Dependent Control of Malaria-Induced Inflammation in Children
Cited by: 135
Author(s): Sílvia Portugal, Jacqueline Moebius, Jeff Skinner, Safiatou Doumbo, Didier Doumtabé, Younoussou Koné, Seydou Dia, Kishore Kanakabandi, Daniel E. Sturdevant, Kimmo Virtaneva, Stephen F. Porcella, Shanping Li, Ogobara K. Doumbo, Kassoum Kayentao, Aissata Ongoïba, Boubacar Traoré, Peter D. Crompton
Software Mentions: 2
Published: over 12 years ago

10.1186/s12711-016-0200-6

Comparing the transcriptomes of embryos from domesticated and wild Atlantic salmon (Salmo salar L.) stocks and examining factors that influence heritability of gene expression
Cited by: 18
Author(s): Beatrix Bicskei, John B. Taggart, Kevin A. Glover, James E. Bron
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.ppat.1006576

Malaria-induced interferon-γ drives the expansion of Tbethi atypical memory B cells
Cited by: 122
Author(s): Nyamekye Obeng-Adjei, Sílvia Portugal, Prasida Holla, Shanping Li, Hyung Sun Sohn, Abhijit A. Ambegaonkar, Jeff Skinner, Georgina Bowyer, Ogobara K. Doumbo, Boubacar Traoré, Susan K. Pierce, Peter D. Crompton
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.ppat.1000767

Universal Features of Post-Transcriptional Gene Regulation Are Critical for Plasmodium Zygote Development
Cited by: 236
Author(s): Gunnar R. Mair, Edwin Lasonder, Lindsey S. Garver, Blandine Franke-Fayard, Céline Carret, J. Wiegant, Roeland W. Dirks, George Dimopoulos, Chris J. Janse, Andrew P. Waters
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.ppat.1001097

The Microbiota Mediates Pathogen Clearance from the Gut Lumen after Non-Typhoidal Salmonella Diarrhea
Cited by: 294
Author(s): Kathrin Endt, Baerbel Stecher, Samuel Chaffron, Emma Slack, Nicolas Tchitchek, Arndt Benecke, Laurye Van Maele, Jean‐Claude Sirard, A. Mueller, Mathias Heikenwälder, Andrew J. Macpherson, Richard A. Strugnell, Christian von Mering, Wolf‐Dietrich Hardt
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.ppat.1002584

Dengue Virus Infection Perturbs Lipid Homeostasis in Infected Mosquito Cells
Cited by: 264
Author(s): Rushika Perera, Catherine P. Riley, Giorgis Isaac, Amber S. Hopf-Jannasch, Ronald J. Moore, Karl Weitz, Ljiljana Paša‐Tolić, Thomas O. Metz, Jiřı́ Adamec, Richard Kühn
Software Mentions: 1
Published: over 14 years ago

10.1534/genetics.117.203521

Toward Universal Forward Genetics: Using a Draft Genome Sequence of the Nematode Oscheius tipulae To Identify Mutations Affecting Vulva Development
Cited by: 17
Author(s): Fabrice Besnard, Georgios Koutsovoulos, Sana Dieudonné, Mark Blaxter, Marie Anne Félix
Software Mentions: 1
Published: over 9 years ago

10.3389/fncel.2019.00181

Phagocytosis of Apoptotic Cells Is Specifically Upregulated in ApoE4 Expressing Microglia in vitro
Cited by: 22
Author(s): Christiane Muth, A. Hartmann, Diego Sepúlveda-Falla, Markus Glatzel, Susanne Krasemann
Software Mentions: 1
Published: over 7 years ago

10.1038/oncsis.2015.29

MiR expression profiles of paired primary colorectal cancer and metastases by next-generation sequencing
Cited by: 57
Author(s): Maarten Neerincx, Daoud Sie, Mark A. van de Wiel, Nicole C.T. van Grieken, J. D. Burggraaf, Henk Dekker, Paul P. Eijk, Bauke Ylstra, Cornelis Verhoef, Gerrit A. Meijer, Tineke E. Buffart, Henk M.W. Verheul
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.ppat.1005133

Mitochondrial Activity and Cyr1 Are Key Regulators of Ras1 Activation of C. albicans Virulence Pathways
Cited by: 88
Author(s): Nora Grahl, Elora G. Demers, Allia K. Lindsay, Colleen E. Harty, Sven D. Willger, Amy E. Piispanen, Deborah A. Hogan
Software Mentions: 1
Published: about 11 years ago

10.1002/jia2.25655

Subtype‐specific differences in transmission cluster dynamics of HIV‐1 B and CRF01_AE in New South Wales, Australia
Cited by: 4
Author(s): Francesca Di Giallonardo, Angie N Pinto, Phillip Keen, Ansari Shaik, Alex Carrera, Hanan Salem, Christine Selvey, Steven J. Nigro, Neil Fraser, Karen Price, Jo Holden, Frederick J. Lee, Dominic E. Dwyer, Benjamin R. Bavinton, Jemma L. Geoghegan, Andrew E. Grulich, Anthony D. Kelleher, Nsw Hiv Prevention Partnership
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.00161-20

Genetic and Chemical-Genetic Interactions Map Biogenesis and Permeability Determinants of the Outer Membrane of Escherichia coli
Cited by: 19
Author(s): Kristina Klobucar, Shawn French, Jean-Philippe Côté, James R. Howes, Eric D. Brown
Software Mentions: 1
Published: over 6 years ago

10.1186/s12711-016-0184-2

Genetic architecture of fatty acid composition in the longissimus dorsi muscle revealed by genome-wide association studies on diverse pig populations
Cited by: 44
Author(s): Wanchang Zhang, Junjie Zhang, Leilei Cui, Junwu Ma, Congying Chen, Huashui Ai, Xianhua Xie, Li Lin, Shijun Xiao, Lusheng Huang, Jun Ren, Bin Yang
Software Mentions: 1
Published: almost 11 years ago

10.1074/jbc.M114.562389

The Nuclear Localization of γ-Tubulin Is Regulated by SadB-mediated Phosphorylation
Cited by: 23
Author(s): Greta Eklund, Stefan Lang, Johan Glindre, Åsa Ehlén, María Alvarado-Kristensson
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.ppat.1006718

Tissue-specific transcriptome analyses provide new insights into GPCR signalling in adult Schistosoma mansoni
Cited by: 25
Author(s): Steffen Hahnel, Nic Wheeler, Zhigang Lu, Arporn Wangwiwatsin, Paul McVeigh, Aaron G. Maule, Matthew Berriman, Timothy A. Day, Paula Ribeiro, Christoph G. Grevelding
Software Mentions: 1
Published: almost 9 years ago

10.1128/mBio.02086-20

Na + -NQR Confers Aminoglycoside Resistance via the Regulation of <scp>l-</scp> Alanine Metabolism
Cited by: 31
Author(s): Ming Jiang, Su-fang Kuang, Shi‐shi Lai, Song Zhang, Jun Yang, Bo Peng, Xuan‐xian Peng, Zhuang‐Gui Chen, Hui Li
Software Mentions: 1
Published: almost 6 years ago

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